Mcup_0012	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Mcup_0015	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0016	PWY-7234	inosine-5'-phosphate biosynthesis III
Mcup_0017	PWY-7234	inosine-5'-phosphate biosynthesis III
Mcup_0018	PWY-6123	inosine-5'-phosphate biosynthesis I
Mcup_0018	PWY-6124	inosine-5'-phosphate biosynthesis II
Mcup_0018	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0018	PWY-7234	inosine-5'-phosphate biosynthesis III
Mcup_0019	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Mcup_0019	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Mcup_0019	PWY-6896	thiamin salvage I
Mcup_0019	PWY-6897	thiamin salvage II
Mcup_0020	PWY-6823	molybdenum cofactor biosynthesis
Mcup_0021	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0021	PWY-6168	flavin biosynthesis III (fungi)
Mcup_0025	PWY-6556	pyrimidine ribonucleosides salvage II
Mcup_0025	PWY-7181	pyrimidine deoxyribonucleosides degradation
Mcup_0025	PWY-7193	pyrimidine ribonucleosides salvage I
Mcup_0025	PWY-7199	pyrimidine deoxyribonucleosides salvage
Mcup_0026	PWY-7183	pyrimidine nucleobases salvage I
Mcup_0029	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Mcup_0029	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Mcup_0029	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_0029	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_0029	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Mcup_0029	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Mcup_0029	PWY-7205	CMP phosphorylation
Mcup_0029	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Mcup_0029	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_0029	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0029	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_0029	PWY-7224	purine deoxyribonucleosides salvage
Mcup_0029	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_0029	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Mcup_0045	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0045	PWY-6168	flavin biosynthesis III (fungi)
Mcup_0046	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0046	PWY-6168	flavin biosynthesis III (fungi)
Mcup_0047	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0047	PWY-6168	flavin biosynthesis III (fungi)
Mcup_0048	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0060	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Mcup_0060	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Mcup_0060	PWY-6936	seleno-amino acid biosynthesis
Mcup_0060	PWY-702	L-methionine biosynthesis II
Mcup_0061	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Mcup_0061	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Mcup_0061	PWY-6936	seleno-amino acid biosynthesis
Mcup_0061	PWY-702	L-methionine biosynthesis II
Mcup_0064	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Mcup_0070	PWY-1042	glycolysis IV (plant cytosol)
Mcup_0070	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Mcup_0070	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0070	PWY-5723	Rubisco shunt
Mcup_0070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_0070	PWY-6886	1-butanol autotrophic biosynthesis
Mcup_0070	PWY-6901	superpathway of glucose and xylose degradation
Mcup_0070	PWY-7003	glycerol degradation to butanol
Mcup_0070	PWY-7124	ethylene biosynthesis V (engineered)
Mcup_0070	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Mcup_0077	PWY-6829	tRNA methylation (yeast)
Mcup_0082	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Mcup_0086	PWY-5532	adenosine nucleotides degradation IV
Mcup_0089	PWY-6689	tRNA splicing
Mcup_0094	PWY-40	putrescine biosynthesis I
Mcup_0094	PWY-6305	putrescine biosynthesis IV
Mcup_0117	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0124	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Mcup_0124	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Mcup_0124	PWY-6897	thiamin salvage II
Mcup_0124	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Mcup_0124	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Mcup_0124	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Mcup_0124	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Mcup_0140	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Mcup_0140	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Mcup_0140	PWY-6896	thiamin salvage I
Mcup_0140	PWY-6897	thiamin salvage II
Mcup_0152	PWY-6174	mevalonate pathway II (archaea)
Mcup_0152	PWY-7524	mevalonate pathway III (archaea)
Mcup_0153	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Mcup_0153	PWY-6174	mevalonate pathway II (archaea)
Mcup_0153	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Mcup_0153	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Mcup_0153	PWY-7102	bisabolene biosynthesis
Mcup_0153	PWY-7391	isoprene biosynthesis II (engineered)
Mcup_0153	PWY-7524	mevalonate pathway III (archaea)
Mcup_0153	PWY-7560	methylerythritol phosphate pathway II
Mcup_0153	PWY-922	mevalonate pathway I
Mcup_0155	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Mcup_0155	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Mcup_0155	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Mcup_0157	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_0158	PWY-181	photorespiration
Mcup_0186	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Mcup_0194	PWY-5101	L-isoleucine biosynthesis II
Mcup_0194	PWY-6871	3-methylbutanol biosynthesis
Mcup_0198	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Mcup_0227	PWY-2941	L-lysine biosynthesis II
Mcup_0227	PWY-2942	L-lysine biosynthesis III
Mcup_0227	PWY-5097	L-lysine biosynthesis VI
Mcup_0256	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_0256	PWY-4521	arsenite oxidation I (respiratory)
Mcup_0256	PWY-6692	Fe(II) oxidation
Mcup_0256	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_0263	PWY-6482	diphthamide biosynthesis (archaea)
Mcup_0263	PWY-7546	diphthamide biosynthesis (eukaryotes)
Mcup_0265	PWY-6823	molybdenum cofactor biosynthesis
Mcup_0277	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Mcup_0277	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Mcup_0293	PWY-1361	benzoyl-CoA degradation I (aerobic)
Mcup_0293	PWY-5109	2-methylbutanoate biosynthesis
Mcup_0293	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Mcup_0293	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Mcup_0293	PWY-5177	glutaryl-CoA degradation
Mcup_0293	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_0293	PWY-6435	4-hydroxybenzoate biosynthesis V
Mcup_0293	PWY-6583	pyruvate fermentation to butanol I
Mcup_0293	PWY-6863	pyruvate fermentation to hexanol
Mcup_0293	PWY-6883	pyruvate fermentation to butanol II
Mcup_0293	PWY-6944	androstenedione degradation
Mcup_0293	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Mcup_0293	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Mcup_0293	PWY-7007	methyl ketone biosynthesis
Mcup_0293	PWY-7046	4-coumarate degradation (anaerobic)
Mcup_0293	PWY-7094	fatty acid salvage
Mcup_0293	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Mcup_0293	PWY-735	jasmonic acid biosynthesis
Mcup_0293	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Mcup_0296	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_0296	PWY-5686	UMP biosynthesis
Mcup_0296	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0297	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_0297	PWY-5686	UMP biosynthesis
Mcup_0297	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0298	PWY-4983	L-citrulline-nitric oxide cycle
Mcup_0298	PWY-4984	urea cycle
Mcup_0298	PWY-5	canavanine biosynthesis
Mcup_0298	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_0298	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0299	PWY-4983	L-citrulline-nitric oxide cycle
Mcup_0299	PWY-4984	urea cycle
Mcup_0299	PWY-5	canavanine biosynthesis
Mcup_0299	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_0299	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0301	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0301	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0301	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0302	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0302	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0302	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0304	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0304	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0304	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0304	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Mcup_0305	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0305	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0305	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0306	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0306	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0306	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0307	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Mcup_0307	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Mcup_0307	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Mcup_0308	PWY-6123	inosine-5'-phosphate biosynthesis I
Mcup_0308	PWY-6124	inosine-5'-phosphate biosynthesis II
Mcup_0308	PWY-7234	inosine-5'-phosphate biosynthesis III
Mcup_0311	PWY-6703	preQ<sub>0</sub> biosynthesis
Mcup_0318	PWY-5686	UMP biosynthesis
Mcup_0319	PWY-5686	UMP biosynthesis
Mcup_0320	PWY-5686	UMP biosynthesis
Mcup_0323	PWY-5686	UMP biosynthesis
Mcup_0332	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Mcup_0345	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Mcup_0345	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Mcup_0345	PWY-6268	adenosylcobalamin salvage from cobalamin
Mcup_0345	PWY-6269	adenosylcobalamin salvage from cobinamide II
Mcup_0348	PWY-6834	spermidine biosynthesis III
Mcup_0351	PWY-6349	CDP-archaeol biosynthesis
Mcup_0355	PWY-5101	L-isoleucine biosynthesis II
Mcup_0355	PWY-5103	L-isoleucine biosynthesis III
Mcup_0355	PWY-5104	L-isoleucine biosynthesis IV
Mcup_0355	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Mcup_0355	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Mcup_0355	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Mcup_0355	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Mcup_0357	PWY-5101	L-isoleucine biosynthesis II
Mcup_0357	PWY-5103	L-isoleucine biosynthesis III
Mcup_0357	PWY-5104	L-isoleucine biosynthesis IV
Mcup_0357	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Mcup_0360	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Mcup_0361	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Mcup_0365	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0367	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0368	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0380	PWY-2301	<i>myo</i>-inositol biosynthesis
Mcup_0380	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Mcup_0380	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Mcup_0380	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Mcup_0380	PWY-6664	di-myo-inositol phosphate biosynthesis
Mcup_0390	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Mcup_0395	PWY-6854	ethylene biosynthesis III (microbes)
Mcup_0404	PWY-6891	thiazole biosynthesis II (Bacillus)
Mcup_0404	PWY-6892	thiazole biosynthesis I (E. coli)
Mcup_0404	PWY-7560	methylerythritol phosphate pathway II
Mcup_0406	PWY-3461	L-tyrosine biosynthesis II
Mcup_0406	PWY-3462	L-phenylalanine biosynthesis II
Mcup_0406	PWY-6120	L-tyrosine biosynthesis III
Mcup_0406	PWY-6627	salinosporamide A biosynthesis
Mcup_0407	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Mcup_0407	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Mcup_0407	PWY-6164	3-dehydroquinate biosynthesis I
Mcup_0408	PWY-6164	3-dehydroquinate biosynthesis I
Mcup_0410	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Mcup_0411	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Mcup_0412	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Mcup_0413	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Mcup_0413	PWY-6416	quinate degradation II
Mcup_0413	PWY-6707	gallate biosynthesis
Mcup_0419	PWY-6482	diphthamide biosynthesis (archaea)
Mcup_0419	PWY-7546	diphthamide biosynthesis (eukaryotes)
Mcup_0425	PWY-3801	sucrose degradation II (sucrose synthase)
Mcup_0425	PWY-3861	mannitol degradation II
Mcup_0425	PWY-3881	mannitol biosynthesis
Mcup_0425	PWY-5054	sorbitol biosynthesis I
Mcup_0425	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Mcup_0425	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Mcup_0425	PWY-5659	GDP-mannose biosynthesis
Mcup_0425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_0425	PWY-621	sucrose degradation III (sucrose invertase)
Mcup_0425	PWY-622	starch biosynthesis
Mcup_0425	PWY-6531	mannitol cycle
Mcup_0425	PWY-6981	chitin biosynthesis
Mcup_0425	PWY-7238	sucrose biosynthesis II
Mcup_0425	PWY-7347	sucrose biosynthesis III
Mcup_0425	PWY-7385	1,3-propanediol biosynthesis (engineered)
Mcup_0425	PWY-7456	mannan degradation
Mcup_0425	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Mcup_0456	PWY-5386	methylglyoxal degradation I
Mcup_0462	PWY-3081	L-lysine biosynthesis V
Mcup_0489	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Mcup_0490	PWY-7285	methylwyosine biosynthesis
Mcup_0490	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Mcup_0491	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0493	PWY-6482	diphthamide biosynthesis (archaea)
Mcup_0502	PWY-6829	tRNA methylation (yeast)
Mcup_0512	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Mcup_0512	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_0512	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Mcup_0512	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Mcup_0512	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_0512	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_0512	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_0512	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Mcup_0522	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Mcup_0522	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Mcup_0522	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Mcup_0524	PWY-4981	L-proline biosynthesis II (from arginine)
Mcup_0524	PWY-4984	urea cycle
Mcup_0524	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0527	PWY-2941	L-lysine biosynthesis II
Mcup_0527	PWY-2942	L-lysine biosynthesis III
Mcup_0527	PWY-5097	L-lysine biosynthesis VI
Mcup_0527	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_0527	PWY-6559	spermidine biosynthesis II
Mcup_0527	PWY-6562	norspermidine biosynthesis
Mcup_0527	PWY-7153	grixazone biosynthesis
Mcup_0527	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_0528	PWY-2941	L-lysine biosynthesis II
Mcup_0528	PWY-2942	L-lysine biosynthesis III
Mcup_0528	PWY-5097	L-lysine biosynthesis VI
Mcup_0528	PWY-6559	spermidine biosynthesis II
Mcup_0528	PWY-6562	norspermidine biosynthesis
Mcup_0528	PWY-7153	grixazone biosynthesis
Mcup_0533	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0534	PWY-2301	<i>myo</i>-inositol biosynthesis
Mcup_0534	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
Mcup_0534	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
Mcup_0534	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
Mcup_0534	PWY-6664	di-myo-inositol phosphate biosynthesis
Mcup_0541	PWY-5958	acridone alkaloid biosynthesis
Mcup_0541	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Mcup_0541	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Mcup_0542	PWY-5958	acridone alkaloid biosynthesis
Mcup_0542	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Mcup_0542	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Mcup_0553	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Mcup_0554	PWY-6832	2-aminoethylphosphonate degradation II
Mcup_0560	PWY-1042	glycolysis IV (plant cytosol)
Mcup_0560	PWY-1622	formaldehyde assimilation I (serine pathway)
Mcup_0560	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Mcup_0560	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0560	PWY-5723	Rubisco shunt
Mcup_0560	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_0560	PWY-6886	1-butanol autotrophic biosynthesis
Mcup_0560	PWY-6901	superpathway of glucose and xylose degradation
Mcup_0560	PWY-7003	glycerol degradation to butanol
Mcup_0560	PWY-7124	ethylene biosynthesis V (engineered)
Mcup_0560	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Mcup_0576	PWY-1042	glycolysis IV (plant cytosol)
Mcup_0576	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0576	PWY-6886	1-butanol autotrophic biosynthesis
Mcup_0576	PWY-6901	superpathway of glucose and xylose degradation
Mcup_0576	PWY-7003	glycerol degradation to butanol
Mcup_0579	PWY-1622	formaldehyde assimilation I (serine pathway)
Mcup_0579	PWY-181	photorespiration
Mcup_0579	PWY-2161	folate polyglutamylation
Mcup_0579	PWY-2201	folate transformations I
Mcup_0579	PWY-3661	glycine betaine degradation I
Mcup_0579	PWY-3661-1	glycine betaine degradation II (mammalian)
Mcup_0579	PWY-3841	folate transformations II
Mcup_0579	PWY-5497	purine nucleobases degradation II (anaerobic)
Mcup_0580	PWY-6174	mevalonate pathway II (archaea)
Mcup_0580	PWY-7391	isoprene biosynthesis II (engineered)
Mcup_0580	PWY-7524	mevalonate pathway III (archaea)
Mcup_0580	PWY-922	mevalonate pathway I
Mcup_0583	PWY-4381	fatty acid biosynthesis initiation I
Mcup_0584	PWY-40	putrescine biosynthesis I
Mcup_0584	PWY-43	putrescine biosynthesis II
Mcup_0584	PWY-6305	putrescine biosynthesis IV
Mcup_0584	PWY-6834	spermidine biosynthesis III
Mcup_0606	PWY-5381	pyridine nucleotide cycling (plants)
Mcup_0611	PWY-6148	tetrahydromethanopterin biosynthesis
Mcup_0617	PWY-381	nitrate reduction II (assimilatory)
Mcup_0617	PWY-5675	nitrate reduction V (assimilatory)
Mcup_0617	PWY-6549	L-glutamine biosynthesis III
Mcup_0617	PWY-6963	ammonia assimilation cycle I
Mcup_0617	PWY-6964	ammonia assimilation cycle II
Mcup_0618	PWY-5663	tetrahydrobiopterin biosynthesis I
Mcup_0618	PWY-5664	tetrahydrobiopterin biosynthesis II
Mcup_0618	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Mcup_0618	PWY-6703	preQ<sub>0</sub> biosynthesis
Mcup_0618	PWY-6983	tetrahydrobiopterin biosynthesis III
Mcup_0618	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Mcup_0620	PWY-6823	molybdenum cofactor biosynthesis
Mcup_0627	PWY-6749	CMP-legionaminate biosynthesis I
Mcup_0628	PWY-3821	galactose degradation III
Mcup_0628	PWY-6174	mevalonate pathway II (archaea)
Mcup_0628	PWY-6317	galactose degradation I (Leloir pathway)
Mcup_0628	PWY-6527	stachyose degradation
Mcup_0628	PWY-7391	isoprene biosynthesis II (engineered)
Mcup_0628	PWY-922	mevalonate pathway I
Mcup_0635	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Mcup_0635	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Mcup_0635	PWY-6268	adenosylcobalamin salvage from cobalamin
Mcup_0635	PWY-6269	adenosylcobalamin salvage from cobinamide II
Mcup_0648	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Mcup_0648	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Mcup_0648	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Mcup_0648	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Mcup_0650	PWY-5392	reductive TCA cycle II
Mcup_0650	PWY-5537	pyruvate fermentation to acetate V
Mcup_0650	PWY-5538	pyruvate fermentation to acetate VI
Mcup_0650	PWY-5690	TCA cycle II (plants and fungi)
Mcup_0650	PWY-5913	TCA cycle VI (obligate autotrophs)
Mcup_0650	PWY-6728	methylaspartate cycle
Mcup_0650	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_0650	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_0651	PWY-5392	reductive TCA cycle II
Mcup_0651	PWY-5537	pyruvate fermentation to acetate V
Mcup_0651	PWY-5538	pyruvate fermentation to acetate VI
Mcup_0651	PWY-5690	TCA cycle II (plants and fungi)
Mcup_0651	PWY-5913	TCA cycle VI (obligate autotrophs)
Mcup_0651	PWY-6728	methylaspartate cycle
Mcup_0651	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_0651	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_0654	PWY-4202	arsenate detoxification I (glutaredoxin)
Mcup_0654	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Mcup_0654	PWY-6608	guanosine nucleotides degradation III
Mcup_0654	PWY-6609	adenine and adenosine salvage III
Mcup_0654	PWY-6611	adenine and adenosine salvage V
Mcup_0654	PWY-6620	guanine and guanosine salvage
Mcup_0654	PWY-6627	salinosporamide A biosynthesis
Mcup_0654	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Mcup_0654	PWY-7179	purine deoxyribonucleosides degradation I
Mcup_0654	PWY-7179-1	purine deoxyribonucleosides degradation
Mcup_0656	PWY-7391	isoprene biosynthesis II (engineered)
Mcup_0656	PWY-922	mevalonate pathway I
Mcup_0657	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Mcup_0664	PWY-6703	preQ<sub>0</sub> biosynthesis
Mcup_0671	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Mcup_0671	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Mcup_0731	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Mcup_0731	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Mcup_0741	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Mcup_0744	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Mcup_0744	PWY-7118	chitin degradation to ethanol
Mcup_0745	PWY-1881	formate oxidation to CO<sub>2</sub>
Mcup_0745	PWY-5497	purine nucleobases degradation II (anaerobic)
Mcup_0745	PWY-6696	oxalate degradation III
Mcup_0749	PWY-5392	reductive TCA cycle II
Mcup_0749	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Mcup_0749	PWY-5690	TCA cycle II (plants and fungi)
Mcup_0749	PWY-5913	TCA cycle VI (obligate autotrophs)
Mcup_0749	PWY-6728	methylaspartate cycle
Mcup_0749	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_0749	PWY-7254	TCA cycle VII (acetate-producers)
Mcup_0749	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_0750	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_0750	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_0756	PWY-6829	tRNA methylation (yeast)
Mcup_0756	PWY-7285	methylwyosine biosynthesis
Mcup_0756	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Mcup_0767	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Mcup_0767	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Mcup_0783	PWY-1042	glycolysis IV (plant cytosol)
Mcup_0783	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0783	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_0783	PWY-7003	glycerol degradation to butanol
Mcup_0786	PWY-6123	inosine-5'-phosphate biosynthesis I
Mcup_0786	PWY-7234	inosine-5'-phosphate biosynthesis III
Mcup_0812	PWY-1361	benzoyl-CoA degradation I (aerobic)
Mcup_0812	PWY-5109	2-methylbutanoate biosynthesis
Mcup_0812	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Mcup_0812	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Mcup_0812	PWY-5177	glutaryl-CoA degradation
Mcup_0812	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_0812	PWY-6435	4-hydroxybenzoate biosynthesis V
Mcup_0812	PWY-6583	pyruvate fermentation to butanol I
Mcup_0812	PWY-6863	pyruvate fermentation to hexanol
Mcup_0812	PWY-6883	pyruvate fermentation to butanol II
Mcup_0812	PWY-6944	androstenedione degradation
Mcup_0812	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Mcup_0812	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Mcup_0812	PWY-7007	methyl ketone biosynthesis
Mcup_0812	PWY-7046	4-coumarate degradation (anaerobic)
Mcup_0812	PWY-7094	fatty acid salvage
Mcup_0812	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Mcup_0812	PWY-735	jasmonic acid biosynthesis
Mcup_0812	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Mcup_0814	PWY-5941	glycogen degradation II (eukaryotic)
Mcup_0814	PWY-6724	starch degradation II
Mcup_0814	PWY-6737	starch degradation V
Mcup_0814	PWY-7238	sucrose biosynthesis II
Mcup_0818	PWY-622	starch biosynthesis
Mcup_0823	PWY-1042	glycolysis IV (plant cytosol)
Mcup_0823	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Mcup_0823	PWY-5484	glycolysis II (from fructose 6-phosphate)
Mcup_0823	PWY-5723	Rubisco shunt
Mcup_0823	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_0823	PWY-6886	1-butanol autotrophic biosynthesis
Mcup_0823	PWY-6901	superpathway of glucose and xylose degradation
Mcup_0823	PWY-7003	glycerol degradation to butanol
Mcup_0823	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Mcup_0823	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Mcup_0829	PWY-6167	flavin biosynthesis II (archaea)
Mcup_0836	PWY-5392	reductive TCA cycle II
Mcup_0836	PWY-5537	pyruvate fermentation to acetate V
Mcup_0836	PWY-5538	pyruvate fermentation to acetate VI
Mcup_0836	PWY-5690	TCA cycle II (plants and fungi)
Mcup_0836	PWY-5913	TCA cycle VI (obligate autotrophs)
Mcup_0836	PWY-6728	methylaspartate cycle
Mcup_0836	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_0836	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_0858	PWY-4381	fatty acid biosynthesis initiation I
Mcup_0858	PWY-5743	3-hydroxypropanoate cycle
Mcup_0858	PWY-5744	glyoxylate assimilation
Mcup_0858	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_0858	PWY-6679	jadomycin biosynthesis
Mcup_0858	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Mcup_0869	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_0880	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Mcup_0880	PWY-7118	chitin degradation to ethanol
Mcup_0881	PWY-6899	base-degraded thiamin salvage
Mcup_0881	PWY-7356	thiamin salvage IV (yeast)
Mcup_0891	PWY-1881	formate oxidation to CO<sub>2</sub>
Mcup_0891	PWY-5497	purine nucleobases degradation II (anaerobic)
Mcup_0891	PWY-6696	oxalate degradation III
Mcup_0895	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Mcup_0895	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Mcup_0901	PWY-6823	molybdenum cofactor biosynthesis
Mcup_0917	PWY-5704	urea degradation II
Mcup_0918	PWY-5704	urea degradation II
Mcup_0925	PWY-3221	dTDP-L-rhamnose biosynthesis II
Mcup_0925	PWY-6808	dTDP-D-forosamine biosynthesis
Mcup_0925	PWY-6942	dTDP-D-desosamine biosynthesis
Mcup_0925	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Mcup_0925	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Mcup_0925	PWY-6974	dTDP-L-olivose biosynthesis
Mcup_0925	PWY-6976	dTDP-L-mycarose biosynthesis
Mcup_0925	PWY-7104	dTDP-L-megosamine biosynthesis
Mcup_0925	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Mcup_0925	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Mcup_0925	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Mcup_0925	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Mcup_0925	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Mcup_0925	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Mcup_0925	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Mcup_0925	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Mcup_0967	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_0967	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_0982	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Mcup_0982	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Mcup_0982	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Mcup_0985	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Mcup_0990	PWY-5839	menaquinol-7 biosynthesis
Mcup_0990	PWY-5844	menaquinol-9 biosynthesis
Mcup_0990	PWY-5849	menaquinol-6 biosynthesis
Mcup_0990	PWY-5890	menaquinol-10 biosynthesis
Mcup_0990	PWY-5891	menaquinol-11 biosynthesis
Mcup_0990	PWY-5892	menaquinol-12 biosynthesis
Mcup_0990	PWY-5895	menaquinol-13 biosynthesis
Mcup_1028	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Mcup_1028	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Mcup_1038	PWY-5943	&beta;-carotene biosynthesis
Mcup_1038	PWY-5947	lutein biosynthesis
Mcup_1172	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Mcup_1172	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Mcup_1191	PWY-5451	acetone degradation I (to methylglyoxal)
Mcup_1191	PWY-6588	pyruvate fermentation to acetone
Mcup_1191	PWY-6876	isopropanol biosynthesis
Mcup_1191	PWY-7466	acetone degradation III (to propane-1,2-diol)
Mcup_1198	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Mcup_1198	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_1198	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_1198	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Mcup_1198	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Mcup_1198	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Mcup_1199	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Mcup_1199	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Mcup_1199	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_1199	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Mcup_1199	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Mcup_1199	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Mcup_1201	PWY-3341	L-proline biosynthesis III
Mcup_1201	PWY-4981	L-proline biosynthesis II (from arginine)
Mcup_1201	PWY-6344	L-ornithine degradation II (Stickland reaction)
Mcup_1210	PWY-2661	trehalose biosynthesis V
Mcup_1212	PWY-2661	trehalose biosynthesis V
Mcup_1215	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Mcup_1244	PWY-6938	NADH repair
Mcup_1246	PWY-1622	formaldehyde assimilation I (serine pathway)
Mcup_1246	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Mcup_1246	PWY-5913	TCA cycle VI (obligate autotrophs)
Mcup_1246	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_1246	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Mcup_1246	PWY-6549	L-glutamine biosynthesis III
Mcup_1246	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Mcup_1246	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Mcup_1246	PWY-7124	ethylene biosynthesis V (engineered)
Mcup_1247	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Mcup_1265	PWY-5129	sphingolipid biosynthesis (plants)
Mcup_1305	PWY-6832	2-aminoethylphosphonate degradation II
Mcup_1354	PWY-6829	tRNA methylation (yeast)
Mcup_1354	PWY-7285	methylwyosine biosynthesis
Mcup_1354	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Mcup_1355	PWY-101	photosynthesis light reactions
Mcup_1355	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Mcup_1357	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Mcup_1357	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Mcup_1357	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Mcup_1363	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Mcup_1363	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Mcup_1363	PWY-6269	adenosylcobalamin salvage from cobinamide II
Mcup_1367	PWY-181	photorespiration
Mcup_1370	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_1370	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_1389	PWY-6823	molybdenum cofactor biosynthesis
Mcup_1390	PWY-702	L-methionine biosynthesis II
Mcup_1394	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1394	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Mcup_1394	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Mcup_1394	PWY-5690	TCA cycle II (plants and fungi)
Mcup_1394	PWY-6728	methylaspartate cycle
Mcup_1394	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_1394	PWY-7254	TCA cycle VII (acetate-producers)
Mcup_1394	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1395	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1395	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Mcup_1395	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Mcup_1395	PWY-5690	TCA cycle II (plants and fungi)
Mcup_1395	PWY-6728	methylaspartate cycle
Mcup_1395	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Mcup_1395	PWY-7254	TCA cycle VII (acetate-producers)
Mcup_1395	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1418	PWY-7158	L-phenylalanine degradation V
Mcup_1427	PWY-2941	L-lysine biosynthesis II
Mcup_1427	PWY-2942	L-lysine biosynthesis III
Mcup_1427	PWY-5097	L-lysine biosynthesis VI
Mcup_1427	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_1427	PWY-6559	spermidine biosynthesis II
Mcup_1427	PWY-6562	norspermidine biosynthesis
Mcup_1427	PWY-7153	grixazone biosynthesis
Mcup_1427	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_1429	PWY-5101	L-isoleucine biosynthesis II
Mcup_1429	PWY-5103	L-isoleucine biosynthesis III
Mcup_1429	PWY-5104	L-isoleucine biosynthesis IV
Mcup_1429	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Mcup_1446	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1446	PWY-4521	arsenite oxidation I (respiratory)
Mcup_1446	PWY-6692	Fe(II) oxidation
Mcup_1446	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1479	PWY-6898	thiamin salvage III
Mcup_1479	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Mcup_1479	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Mcup_1480	PWY-6871	3-methylbutanol biosynthesis
Mcup_1488	PWY-6654	phosphopantothenate biosynthesis III
Mcup_1490	PWY-6654	phosphopantothenate biosynthesis III
Mcup_1491	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_1491	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_1494	PWY-5194	siroheme biosynthesis
Mcup_1494	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Mcup_1499	PWY-6829	tRNA methylation (yeast)
Mcup_1499	PWY-7285	methylwyosine biosynthesis
Mcup_1499	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Mcup_1501	PWY-381	nitrate reduction II (assimilatory)
Mcup_1501	PWY-5675	nitrate reduction V (assimilatory)
Mcup_1501	PWY-6549	L-glutamine biosynthesis III
Mcup_1501	PWY-6963	ammonia assimilation cycle I
Mcup_1501	PWY-6964	ammonia assimilation cycle II
Mcup_1516	PWY-5743	3-hydroxypropanoate cycle
Mcup_1516	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_1516	PWY-6728	methylaspartate cycle
Mcup_1516	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_1517	PWY-5743	3-hydroxypropanoate cycle
Mcup_1517	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_1517	PWY-6728	methylaspartate cycle
Mcup_1517	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Mcup_1523	PWY-6823	molybdenum cofactor biosynthesis
Mcup_1524	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Mcup_1524	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Mcup_1524	PWY-6897	thiamin salvage II
Mcup_1524	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Mcup_1524	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Mcup_1524	PWY-6910	hydroxymethylpyrimidine salvage
Mcup_1524	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Mcup_1524	PWY-7356	thiamin salvage IV (yeast)
Mcup_1524	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Mcup_1531	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Mcup_1531	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Mcup_1531	PWY-6897	thiamin salvage II
Mcup_1531	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Mcup_1531	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Mcup_1531	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Mcup_1531	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Mcup_1537	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_1537	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_1538	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_1538	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_1548	PWY-6703	preQ<sub>0</sub> biosynthesis
Mcup_1581	PWY-6823	molybdenum cofactor biosynthesis
Mcup_1598	PWY-40	putrescine biosynthesis I
Mcup_1598	PWY-6305	putrescine biosynthesis IV
Mcup_1604	PWY-7429	arsenite oxidation II (respiratory)
Mcup_1609	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1609	PWY-4521	arsenite oxidation I (respiratory)
Mcup_1609	PWY-6692	Fe(II) oxidation
Mcup_1609	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1651	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Mcup_1651	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Mcup_1658	PWY-6785	hydrogen production VIII
Mcup_1680	PWY-1361	benzoyl-CoA degradation I (aerobic)
Mcup_1680	PWY-5109	2-methylbutanoate biosynthesis
Mcup_1680	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Mcup_1680	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Mcup_1680	PWY-5177	glutaryl-CoA degradation
Mcup_1680	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_1680	PWY-6435	4-hydroxybenzoate biosynthesis V
Mcup_1680	PWY-6583	pyruvate fermentation to butanol I
Mcup_1680	PWY-6863	pyruvate fermentation to hexanol
Mcup_1680	PWY-6883	pyruvate fermentation to butanol II
Mcup_1680	PWY-6944	androstenedione degradation
Mcup_1680	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Mcup_1680	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Mcup_1680	PWY-7007	methyl ketone biosynthesis
Mcup_1680	PWY-7046	4-coumarate degradation (anaerobic)
Mcup_1680	PWY-7094	fatty acid salvage
Mcup_1680	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Mcup_1680	PWY-735	jasmonic acid biosynthesis
Mcup_1680	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Mcup_1687	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Mcup_1687	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Mcup_1687	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Mcup_1687	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Mcup_1688	PWY-1361	benzoyl-CoA degradation I (aerobic)
Mcup_1688	PWY-5109	2-methylbutanoate biosynthesis
Mcup_1688	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Mcup_1688	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Mcup_1688	PWY-5177	glutaryl-CoA degradation
Mcup_1688	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Mcup_1688	PWY-6435	4-hydroxybenzoate biosynthesis V
Mcup_1688	PWY-6583	pyruvate fermentation to butanol I
Mcup_1688	PWY-6863	pyruvate fermentation to hexanol
Mcup_1688	PWY-6883	pyruvate fermentation to butanol II
Mcup_1688	PWY-6944	androstenedione degradation
Mcup_1688	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Mcup_1688	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Mcup_1688	PWY-7007	methyl ketone biosynthesis
Mcup_1688	PWY-7046	4-coumarate degradation (anaerobic)
Mcup_1688	PWY-7094	fatty acid salvage
Mcup_1688	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Mcup_1688	PWY-735	jasmonic acid biosynthesis
Mcup_1688	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Mcup_1689	PWY-1341	phenylacetate degradation II (anaerobic)
Mcup_1689	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Mcup_1702	PWY-5303	thiosulfate oxidation II (via tetrathionate)
Mcup_1712	PWY-5303	thiosulfate oxidation II (via tetrathionate)
Mcup_1713	PWY-5303	thiosulfate oxidation II (via tetrathionate)
Mcup_1720	PWY-5350	thiosulfate disproportionation III (rhodanese)
Mcup_1747	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1747	PWY-4521	arsenite oxidation I (respiratory)
Mcup_1747	PWY-6692	Fe(II) oxidation
Mcup_1747	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1779	PWY-3781	aerobic respiration I (cytochrome c)
Mcup_1779	PWY-4521	arsenite oxidation I (respiratory)
Mcup_1779	PWY-6692	Fe(II) oxidation
Mcup_1779	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Mcup_1789	PWY-5747	2-methylcitrate cycle II
Mcup_1828	PWY-4041	&gamma;-glutamyl cycle
Mcup_1828	PWY-5826	hypoglycin biosynthesis
Mcup_1841	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Mcup_1841	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Mcup_1844	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Mcup_1844	PWY-7177	UTP and CTP dephosphorylation II
Mcup_1844	PWY-7185	UTP and CTP dephosphorylation I
Mcup_1845	PWY-5686	UMP biosynthesis
Mcup_1849	PWY-6749	CMP-legionaminate biosynthesis I
Mcup_1854	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_1854	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Mcup_1855	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_1855	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Mcup_1856	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_1857	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_1857	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Mcup_1858	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Mcup_1859	PWY-5194	siroheme biosynthesis
Mcup_1859	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Mcup_1873	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_1875	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Mcup_1875	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Mcup_1875	PWY-6269	adenosylcobalamin salvage from cobinamide II
Mcup_1889	PWY-6910	hydroxymethylpyrimidine salvage
Mcup_1889	PWY-7356	thiamin salvage IV (yeast)
Mcup_1889	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Mcup_1908	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_1908	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_1909	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Mcup_1909	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Mcup_1922	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Mcup_1932	PWY-5796	malonate decarboxylase activation
Mcup_1941	PWY-7205	CMP phosphorylation
Mcup_1943	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Mcup_1988	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Mcup_2002	PWY-6349	CDP-archaeol biosynthesis
Mcup_2004	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Mcup_2013	PWY-6689	tRNA splicing
Mcup_2018	PWY-6700	queuosine biosynthesis
Mcup_2018	PWY-6711	archaeosine biosynthesis
Mcup_2020	PWY-6711	archaeosine biosynthesis
Mcup_2030	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Mcup_2030	PWY-5723	Rubisco shunt
Mcup_2034	PWY-6349	CDP-archaeol biosynthesis
