MA0006	PWY-3581	(<i>S</i>)-reticuline biosynthesis I
MA0006	PWY-5254	methanofuran biosynthesis
MA0006	PWY-5474	hydroxycinnamic acid tyramine amides biosynthesis
MA0006	PWY-6133	(S)-reticuline biosynthesis II
MA0006	PWY-6802	salidroside biosynthesis
MA0006	PWY-7297	octopamine biosynthesis
MA0040	PWY-7285	methylwyosine biosynthesis
MA0040	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MA0069	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MA0069	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MA0069	PWY-6896	thiamin salvage I
MA0069	PWY-6897	thiamin salvage II
MA0072	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA0072	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA0072	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA0075	PWY-2301	<i>myo</i>-inositol biosynthesis
MA0075	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
MA0075	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
MA0075	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
MA0075	PWY-6664	di-myo-inositol phosphate biosynthesis
MA0076	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MA0076	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MA0090	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
MA0104	PWY-5381	pyridine nucleotide cycling (plants)
MA0104	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
MA0104	PWY-6596	adenosine nucleotides degradation I
MA0104	PWY-6606	guanosine nucleotides degradation II
MA0104	PWY-6607	guanosine nucleotides degradation I
MA0104	PWY-6608	guanosine nucleotides degradation III
MA0104	PWY-7185	UTP and CTP dephosphorylation I
MA0105	PWY-6823	molybdenum cofactor biosynthesis
MA0115	PWY-5669	phosphatidylethanolamine biosynthesis I
MA0116	PWY-5669	phosphatidylethanolamine biosynthesis I
MA0117	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MA0117	PWY-6148	tetrahydromethanopterin biosynthesis
MA0117	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MA0117	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MA0121	PWY-6711	archaeosine biosynthesis
MA0130	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA0130	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA0130	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA0131	PWY-2941	L-lysine biosynthesis II
MA0131	PWY-2942	L-lysine biosynthesis III
MA0131	PWY-5097	L-lysine biosynthesis VI
MA0131	PWY-6559	spermidine biosynthesis II
MA0131	PWY-6562	norspermidine biosynthesis
MA0131	PWY-7153	grixazone biosynthesis
MA0132	PWY-1042	glycolysis IV (plant cytosol)
MA0132	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA0132	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA0132	PWY-5723	Rubisco shunt
MA0132	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA0132	PWY-6886	1-butanol autotrophic biosynthesis
MA0132	PWY-6901	superpathway of glucose and xylose degradation
MA0132	PWY-7003	glycerol degradation to butanol
MA0132	PWY-7124	ethylene biosynthesis V (engineered)
MA0132	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA0135	PWY-5199	factor 420 polyglutamylation
MA0136	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA0137	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA0144	PWY-5247	methanogenesis from methylamine
MA0146	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0146	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0154	PWY-5198	factor 420 biosynthesis
MA0154	PWY-6994	L-pyrrolysine biosynthesis
MA0206	PWY-7234	inosine-5'-phosphate biosynthesis III
MA0216	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MA0216	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MA0236	PWY-6823	molybdenum cofactor biosynthesis
MA0236	PWY-6891	thiazole biosynthesis II (Bacillus)
MA0236	PWY-6892	thiazole biosynthesis I (E. coli)
MA0236	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MA0241	PWY-6749	CMP-legionaminate biosynthesis I
MA0261	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
MA0307	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA0309	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA0316	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA0316	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MA0322	PWY-5381	pyridine nucleotide cycling (plants)
MA0339	PWY-6148	tetrahydromethanopterin biosynthesis
MA0379	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
MA0379	PWY-5532	adenosine nucleotides degradation IV
MA0379	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MA0430	PWY-2941	L-lysine biosynthesis II
MA0430	PWY-2942	L-lysine biosynthesis III
MA0430	PWY-5097	L-lysine biosynthesis VI
MA0430	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA0430	PWY-6559	spermidine biosynthesis II
MA0430	PWY-6562	norspermidine biosynthesis
MA0430	PWY-7153	grixazone biosynthesis
MA0430	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA0439	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
MA0440	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MA0440	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA0440	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA0440	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
MA0452	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MA0452	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MA0452	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MA0452	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MA0493	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MA0521	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA0528	PWY-5250	methanogenesis from trimethylamine
MA0532	PWY-5248	methanogenesis from dimethylamine
MA0534	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0547	PWY-6167	flavin biosynthesis II (archaea)
MA0548	PWY-6167	flavin biosynthesis II (archaea)
MA0548	PWY-6168	flavin biosynthesis III (fungi)
MA0550	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA0576	PWY-5194	siroheme biosynthesis
MA0576	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA0577	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0578	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0578	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MA0581	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0582	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0582	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MA0587	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA0602	PWY-3821	galactose degradation III
MA0602	PWY-6174	mevalonate pathway II (archaea)
MA0602	PWY-6317	galactose degradation I (Leloir pathway)
MA0602	PWY-6527	stachyose degradation
MA0602	PWY-7391	isoprene biosynthesis II (engineered)
MA0602	PWY-922	mevalonate pathway I
MA0603	PWY-6174	mevalonate pathway II (archaea)
MA0603	PWY-7524	mevalonate pathway III (archaea)
MA0604	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
MA0604	PWY-6174	mevalonate pathway II (archaea)
MA0604	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
MA0604	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
MA0604	PWY-7102	bisabolene biosynthesis
MA0604	PWY-7391	isoprene biosynthesis II (engineered)
MA0604	PWY-7524	mevalonate pathway III (archaea)
MA0604	PWY-7560	methylerythritol phosphate pathway II
MA0604	PWY-922	mevalonate pathway I
MA0608	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
MA0608	PWY-6549	L-glutamine biosynthesis III
MA0608	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MA0608	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MA0613	PWY-6829	tRNA methylation (yeast)
MA0613	PWY-7285	methylwyosine biosynthesis
MA0613	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MA0676	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
MA0676	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
MA0685	PWY-6683	sulfate reduction III (assimilatory)
MA0694	PWY-5796	malonate decarboxylase activation
MA0714	PWY-5198	factor 420 biosynthesis
MA0718	PWY-6482	diphthamide biosynthesis (archaea)
MA0718	PWY-7546	diphthamide biosynthesis (eukaryotes)
MA0722	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
MA0726	PWY-2941	L-lysine biosynthesis II
MA0726	PWY-2942	L-lysine biosynthesis III
MA0726	PWY-5097	L-lysine biosynthesis VI
MA0734	PWY-6825	phosphatidylcholine biosynthesis V
MA0739	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA0739	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA0779	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0779	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0792	PWY-4981	L-proline biosynthesis II (from arginine)
MA0808	PWY-6823	molybdenum cofactor biosynthesis
MA0808	PWY-6891	thiazole biosynthesis II (Bacillus)
MA0808	PWY-6892	thiazole biosynthesis I (E. coli)
MA0808	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MA0819	PWY-1622	formaldehyde assimilation I (serine pathway)
MA0819	PWY-5392	reductive TCA cycle II
MA0819	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MA0819	PWY-5690	TCA cycle II (plants and fungi)
MA0819	PWY-5913	TCA cycle VI (obligate autotrophs)
MA0819	PWY-6728	methylaspartate cycle
MA0819	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MA0819	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MA0819	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MA0821	PWY-3801	sucrose degradation II (sucrose synthase)
MA0821	PWY-5054	sorbitol biosynthesis I
MA0821	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
MA0821	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MA0821	PWY-5659	GDP-mannose biosynthesis
MA0821	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA0821	PWY-621	sucrose degradation III (sucrose invertase)
MA0821	PWY-622	starch biosynthesis
MA0821	PWY-6531	mannitol cycle
MA0821	PWY-6981	chitin biosynthesis
MA0821	PWY-7238	sucrose biosynthesis II
MA0821	PWY-7347	sucrose biosynthesis III
MA0821	PWY-7385	1,3-propanediol biosynthesis (engineered)
MA0832	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA0834	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA0847	PWY-5194	siroheme biosynthesis
MA0847	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0847	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0847	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA0855	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0855	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0859	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0859	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0872	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA0872	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA0892	PWY-5686	UMP biosynthesis
MA0905	PWY-5941	glycogen degradation II (eukaryotic)
MA0905	PWY-6724	starch degradation II
MA0905	PWY-6737	starch degradation V
MA0905	PWY-7238	sucrose biosynthesis II
MA0914	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MA0914	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MA0914	PWY-6896	thiamin salvage I
MA0914	PWY-6897	thiamin salvage II
MA0932	PWY-5250	methanogenesis from trimethylamine
MA0933	PWY-5248	methanogenesis from dimethylamine
MA0939	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
MA0939	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
MA0939	PWY-6269	adenosylcobalamin salvage from cobinamide II
MA0942	PWY-5443	aminopropanol phosphate biosynthesis I
MA0955	PWY-5316	nicotine biosynthesis
MA0955	PWY-5381	pyridine nucleotide cycling (plants)
MA0955	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
MA0955	PWY-7342	superpathway of nicotine biosynthesis
MA0959	PWY-5316	nicotine biosynthesis
MA0959	PWY-7342	superpathway of nicotine biosynthesis
MA0961	PWY-6349	CDP-archaeol biosynthesis
MA0962	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MA0962	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MA0969	PWY-5686	UMP biosynthesis
MA1000	PWY-6825	phosphatidylcholine biosynthesis V
MA1001	PWY-5392	reductive TCA cycle II
MA1001	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
MA1001	PWY-5690	TCA cycle II (plants and fungi)
MA1001	PWY-5913	TCA cycle VI (obligate autotrophs)
MA1001	PWY-6728	methylaspartate cycle
MA1001	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MA1001	PWY-7254	TCA cycle VII (acetate-producers)
MA1001	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MA1016	PWY-5372	carbon tetrachloride degradation II
MA1016	PWY-6780	hydrogen production VI
MA1096	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA1104	PWY-7205	CMP phosphorylation
MA1152	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA1170	PWY-6938	NADH repair
MA1173	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
MA1173	PWY-5739	GDP-D-perosamine biosynthesis
MA1173	PWY-5740	GDP-L-colitose biosynthesis
MA1173	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
MA1174	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
MA1174	PWY-5739	GDP-D-perosamine biosynthesis
MA1174	PWY-5740	GDP-L-colitose biosynthesis
MA1174	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
MA1189	PWY-6785	hydrogen production VIII
MA1225	PWY-6871	3-methylbutanol biosynthesis
MA1241	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA1275	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
MA1279	PWY-6654	phosphopantothenate biosynthesis III
MA1309	PWY-5372	carbon tetrachloride degradation II
MA1309	PWY-6780	hydrogen production VI
MA1318	PWY-4983	L-citrulline-nitric oxide cycle
MA1318	PWY-4984	urea cycle
MA1318	PWY-5	canavanine biosynthesis
MA1318	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA1318	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA1370	PWY-6482	diphthamide biosynthesis (archaea)
MA1374	PWY-6482	diphthamide biosynthesis (archaea)
MA1374	PWY-7546	diphthamide biosynthesis (eukaryotes)
MA1376	PWY-6123	inosine-5'-phosphate biosynthesis I
MA1376	PWY-7234	inosine-5'-phosphate biosynthesis III
MA1377	PWY-3461	L-tyrosine biosynthesis II
MA1377	PWY-3462	L-phenylalanine biosynthesis II
MA1377	PWY-6120	L-tyrosine biosynthesis III
MA1377	PWY-6627	salinosporamide A biosynthesis
MA1378	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA1439	PWY-5381	pyridine nucleotide cycling (plants)
MA1455	PWY-6829	tRNA methylation (yeast)
MA1484	PWY-6349	CDP-archaeol biosynthesis
MA1488	PWY-5198	factor 420 biosynthesis
MA1489	PWY-5198	factor 420 biosynthesis
MA1490	PWY-5198	factor 420 biosynthesis
MA1491	PWY-5198	factor 420 biosynthesis
MA1507	PWY-5207	coenzyme B/coenzyme M regeneration
MA1509	PWY-5207	coenzyme B/coenzyme M regeneration
MA1524	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MA1524	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MA1524	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA1524	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA1524	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
MA1524	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MA1524	PWY-7205	CMP phosphorylation
MA1524	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA1524	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA1524	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MA1524	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA1524	PWY-7224	purine deoxyribonucleosides salvage
MA1524	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA1524	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MA1554	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA1554	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA1574	PWY-6854	ethylene biosynthesis III (microbes)
MA1615	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA1615	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA1640	PWY-5941	glycogen degradation II (eukaryotic)
MA1640	PWY-6724	starch degradation II
MA1640	PWY-6737	starch degradation V
MA1640	PWY-7238	sucrose biosynthesis II
MA1651	PWY-6829	tRNA methylation (yeast)
MA1651	PWY-7285	methylwyosine biosynthesis
MA1651	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MA1665	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MA1665	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA1665	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MA1665	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA1665	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA1665	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA1665	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA1665	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
MA1672	PWY-1042	glycolysis IV (plant cytosol)
MA1672	PWY-1622	formaldehyde assimilation I (serine pathway)
MA1672	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA1672	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA1672	PWY-5723	Rubisco shunt
MA1672	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA1672	PWY-6886	1-butanol autotrophic biosynthesis
MA1672	PWY-6901	superpathway of glucose and xylose degradation
MA1672	PWY-7003	glycerol degradation to butanol
MA1672	PWY-7124	ethylene biosynthesis V (engineered)
MA1672	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA1679	PWY-6424	MA1679|MA1679|NP_616606.1|GeneID:1473567
MA1683	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MA1683	PWY-5723	Rubisco shunt
MA1712	PWY-5097	L-lysine biosynthesis VI
MA1725	PWY-1341	phenylacetate degradation II (anaerobic)
MA1725	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
MA1790	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
MA1802	PWY-5101	L-isoleucine biosynthesis II
MA1802	PWY-5103	L-isoleucine biosynthesis III
MA1802	PWY-5104	L-isoleucine biosynthesis IV
MA1802	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MA1816	PWY-6832	2-aminoethylphosphonate degradation II
MA1817	PWY-6167	flavin biosynthesis II (archaea)
MA1817	PWY-6168	flavin biosynthesis III (fungi)
MA1818	PWY-6167	flavin biosynthesis II (archaea)
MA1818	PWY-6168	flavin biosynthesis III (fungi)
MA1820	PWY-6167	flavin biosynthesis II (archaea)
MA1820	PWY-6168	flavin biosynthesis III (fungi)
MA1874	PWY-5941	glycogen degradation II (eukaryotic)
MA1874	PWY-622	starch biosynthesis
MA1874	PWY-6731	starch degradation III
MA1874	PWY-6737	starch degradation V
MA1874	PWY-7238	sucrose biosynthesis II
MA1919	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA1949	PWY-4321	L-glutamate degradation IV
MA1963	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA1963	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA1963	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA1964	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA1964	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA1964	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA1969	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MA1969	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MA1977	PWY-5964	guanylyl molybdenum cofactor biosynthesis
MA1978	PWY-6823	molybdenum cofactor biosynthesis
MA2064	PWY-6829	tRNA methylation (yeast)
MA2064	PWY-7285	methylwyosine biosynthesis
MA2064	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
MA2084	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
MA2084	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
MA2084	PWY-6268	adenosylcobalamin salvage from cobalamin
MA2084	PWY-6269	adenosylcobalamin salvage from cobinamide II
MA2142	PWY-4983	L-citrulline-nitric oxide cycle
MA2142	PWY-4984	urea cycle
MA2142	PWY-5	canavanine biosynthesis
MA2142	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA2142	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA2143	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA2143	PWY-5686	UMP biosynthesis
MA2143	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA2144	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA2144	PWY-5686	UMP biosynthesis
MA2144	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA2163	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA2163	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA2166	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA2166	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA2172	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
MA2172	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
MA2172	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
MA2172	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
MA2183	PWY-3221	dTDP-L-rhamnose biosynthesis II
MA2183	PWY-6808	dTDP-D-forosamine biosynthesis
MA2183	PWY-6942	dTDP-D-desosamine biosynthesis
MA2183	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MA2183	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MA2183	PWY-6974	dTDP-L-olivose biosynthesis
MA2183	PWY-6976	dTDP-L-mycarose biosynthesis
MA2183	PWY-7104	dTDP-L-megosamine biosynthesis
MA2183	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MA2183	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MA2183	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MA2183	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MA2183	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MA2183	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MA2183	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MA2183	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MA2186	PWY-3221	dTDP-L-rhamnose biosynthesis II
MA2186	PWY-6808	dTDP-D-forosamine biosynthesis
MA2186	PWY-6942	dTDP-D-desosamine biosynthesis
MA2186	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MA2186	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MA2186	PWY-6974	dTDP-L-olivose biosynthesis
MA2186	PWY-6976	dTDP-L-mycarose biosynthesis
MA2186	PWY-7104	dTDP-L-megosamine biosynthesis
MA2186	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MA2186	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MA2186	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MA2186	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MA2186	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MA2186	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MA2186	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MA2186	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MA2190	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA2190	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA2244	PWY-1341	phenylacetate degradation II (anaerobic)
MA2244	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
MA2253	PWY-2301	<i>myo</i>-inositol biosynthesis
MA2253	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
MA2253	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
MA2253	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
MA2253	PWY-6664	di-myo-inositol phosphate biosynthesis
MA2310	PWY-6610	adenine and adenosine salvage IV
MA2381	PWY-5659	GDP-mannose biosynthesis
MA2381	PWY-6073	alginate biosynthesis I (algal)
MA2381	PWY-6082	alginate biosynthesis II (bacterial)
MA2381	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
MA2400	PWY-1622	formaldehyde assimilation I (serine pathway)
MA2400	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA2422	PWY-6854	ethylene biosynthesis III (microbes)
MA2425	PWY-5248	methanogenesis from dimethylamine
MA2430	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MA2430	PWY-6148	tetrahydromethanopterin biosynthesis
MA2430	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MA2430	PWY-6898	thiamin salvage III
MA2430	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MA2430	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MA2430	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
MA2434	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA2441	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA2467	PWY-6825	phosphatidylcholine biosynthesis V
MA2533	PWY-5381	pyridine nucleotide cycling (plants)
MA2558	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA2558	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA2560	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA2560	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA2628	PWY-5941	glycogen degradation II (eukaryotic)
MA2628	PWY-6724	starch degradation II
MA2628	PWY-6737	starch degradation V
MA2628	PWY-7238	sucrose biosynthesis II
MA2665	PWY-6749	CMP-legionaminate biosynthesis I
MA2667	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA2669	PWY-1042	glycolysis IV (plant cytosol)
MA2669	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA2669	PWY-6886	1-butanol autotrophic biosynthesis
MA2669	PWY-6901	superpathway of glucose and xylose degradation
MA2669	PWY-7003	glycerol degradation to butanol
MA2671	PWY-1042	glycolysis IV (plant cytosol)
MA2671	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA2671	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA2671	PWY-5723	Rubisco shunt
MA2671	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA2671	PWY-6886	1-butanol autotrophic biosynthesis
MA2671	PWY-6901	superpathway of glucose and xylose degradation
MA2671	PWY-7003	glycerol degradation to butanol
MA2671	PWY-7124	ethylene biosynthesis V (engineered)
MA2671	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA2690	PWY-1622	formaldehyde assimilation I (serine pathway)
MA2690	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
MA2690	PWY-5913	TCA cycle VI (obligate autotrophs)
MA2690	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA2690	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
MA2690	PWY-6549	L-glutamine biosynthesis III
MA2690	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
MA2690	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
MA2690	PWY-7124	ethylene biosynthesis V (engineered)
MA2714	PWY-5344	L-homocysteine biosynthesis
MA2715	PWY-5344	L-homocysteine biosynthesis
MA2715	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
MA2716	PWY-5316	nicotine biosynthesis
MA2716	PWY-7342	superpathway of nicotine biosynthesis
MA2718	PWY-6823	molybdenum cofactor biosynthesis
MA2718	PWY-6891	thiazole biosynthesis II (Bacillus)
MA2718	PWY-6892	thiazole biosynthesis I (E. coli)
MA2718	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MA2720	PWY-5667	CDP-diacylglycerol biosynthesis I
MA2720	PWY-5981	CDP-diacylglycerol biosynthesis III
MA2720	PWY-6936	seleno-amino acid biosynthesis
MA2721	PWY-6936	seleno-amino acid biosynthesis
MA2721	PWY-7274	D-cycloserine biosynthesis
MA2722	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MA2722	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MA2722	PWY-6897	thiamin salvage II
MA2722	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MA2722	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MA2722	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MA2722	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MA2723	PWY-6897	thiamin salvage II
MA2723	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MA2723	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MA2828	PWY-5663	tetrahydrobiopterin biosynthesis I
MA2828	PWY-5664	tetrahydrobiopterin biosynthesis II
MA2828	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MA2828	PWY-6703	preQ<sub>0</sub> biosynthesis
MA2828	PWY-6983	tetrahydrobiopterin biosynthesis III
MA2828	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MA2851	PWY-5532	adenosine nucleotides degradation IV
MA2878	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA2923	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MA2923	PWY-5957	L-nicotianamine biosynthesis
MA2972	PWY-5247	methanogenesis from methylamine
MA2986	PWY-5958	acridone alkaloid biosynthesis
MA2986	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MA2986	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MA2987	PWY-5958	acridone alkaloid biosynthesis
MA2987	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
MA2987	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
MA3006	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
MA3006	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MA3012	PWY-40	putrescine biosynthesis I
MA3012	PWY-43	putrescine biosynthesis II
MA3012	PWY-6305	putrescine biosynthesis IV
MA3012	PWY-6834	spermidine biosynthesis III
MA3022	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MA3023	PWY-6749	CMP-legionaminate biosynthesis I
MA3024	PWY-6749	CMP-legionaminate biosynthesis I
MA3025	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
MA3033	PWY-5194	siroheme biosynthesis
MA3033	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA3034	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
MA3034	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
MA3073	PWY-6174	mevalonate pathway II (archaea)
MA3073	PWY-7391	isoprene biosynthesis II (engineered)
MA3073	PWY-7524	mevalonate pathway III (archaea)
MA3073	PWY-922	mevalonate pathway I
MA3113	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA3113	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA3150	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
MA3165	PWY-6683	sulfate reduction III (assimilatory)
MA3167	PWY-6683	sulfate reduction III (assimilatory)
MA3168	PWY-5392	reductive TCA cycle II
MA3168	PWY-5537	pyruvate fermentation to acetate V
MA3168	PWY-5538	pyruvate fermentation to acetate VI
MA3168	PWY-5690	TCA cycle II (plants and fungi)
MA3168	PWY-5913	TCA cycle VI (obligate autotrophs)
MA3168	PWY-6728	methylaspartate cycle
MA3168	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
MA3168	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
MA3193	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA3193	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA3193	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA3193	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA3197	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
MA3197	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
MA3197	PWY-6897	thiamin salvage II
MA3197	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
MA3197	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
MA3197	PWY-6910	hydroxymethylpyrimidine salvage
MA3197	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
MA3197	PWY-7356	thiamin salvage IV (yeast)
MA3197	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
MA3237	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA3242	PWY-5532	adenosine nucleotides degradation IV
MA3264	PWY-6823	molybdenum cofactor biosynthesis
MA3264	PWY-6891	thiazole biosynthesis II (Bacillus)
MA3264	PWY-6892	thiazole biosynthesis I (E. coli)
MA3264	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
MA3279	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
MA3279	PWY-7177	UTP and CTP dephosphorylation II
MA3279	PWY-7185	UTP and CTP dephosphorylation I
MA3282	PWY-5372	carbon tetrachloride degradation II
MA3282	PWY-6780	hydrogen production VI
MA3297	PWY-6643	coenzyme M biosynthesis II
MA3298	PWY-6637	sulfolactate degradation II
MA3298	PWY-6643	coenzyme M biosynthesis II
MA3307	PWY-5686	UMP biosynthesis
MA3309	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA3309	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA3309	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA3310	PWY-4981	L-proline biosynthesis II (from arginine)
MA3310	PWY-4984	urea cycle
MA3310	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA3342	PWY-6871	3-methylbutanol biosynthesis
MA3343	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
MA3343	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
MA3343	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
MA3373	PWY-5101	L-isoleucine biosynthesis II
MA3373	PWY-5103	L-isoleucine biosynthesis III
MA3373	PWY-5104	L-isoleucine biosynthesis IV
MA3373	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MA3382	PWY-381	nitrate reduction II (assimilatory)
MA3382	PWY-5675	nitrate reduction V (assimilatory)
MA3382	PWY-6549	L-glutamine biosynthesis III
MA3382	PWY-6963	ammonia assimilation cycle I
MA3382	PWY-6964	ammonia assimilation cycle II
MA3402	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MA3402	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA3402	PWY-7185	UTP and CTP dephosphorylation I
MA3402	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MA3402	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA3408	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA3439	PWY-6683	sulfate reduction III (assimilatory)
MA3464	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA3471	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA3496	PWY-40	putrescine biosynthesis I
MA3496	PWY-43	putrescine biosynthesis II
MA3496	PWY-6305	putrescine biosynthesis IV
MA3496	PWY-6834	spermidine biosynthesis III
MA3512	PWY-5199	factor 420 polyglutamylation
MA3514	PWY-2201	folate transformations I
MA3514	PWY-3841	folate transformations II
MA3516	PWY-6614	tetrahydrofolate biosynthesis
MA3519	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
MA3519	PWY-2201	folate transformations I
MA3519	PWY-3841	folate transformations II
MA3519	PWY-5030	L-histidine degradation III
MA3519	PWY-5497	purine nucleobases degradation II (anaerobic)
MA3519	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MA3520	PWY-1622	formaldehyde assimilation I (serine pathway)
MA3520	PWY-181	photorespiration
MA3520	PWY-2161	folate polyglutamylation
MA3520	PWY-2201	folate transformations I
MA3520	PWY-3661	glycine betaine degradation I
MA3520	PWY-3661-1	glycine betaine degradation II (mammalian)
MA3520	PWY-3841	folate transformations II
MA3520	PWY-5497	purine nucleobases degradation II (anaerobic)
MA3522	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA3522	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
MA3544	PWY-181	photorespiration
MA3563	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA3564	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA3566	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA3566	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA3592	PWY-1042	glycolysis IV (plant cytosol)
MA3592	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA3592	PWY-6886	1-butanol autotrophic biosynthesis
MA3592	PWY-6901	superpathway of glucose and xylose degradation
MA3592	PWY-7003	glycerol degradation to butanol
MA3606	PWY-5482	pyruvate fermentation to acetate II
MA3606	PWY-5485	pyruvate fermentation to acetate IV
MA3606	PWY-5497	purine nucleobases degradation II (anaerobic)
MA3607	PWY-1281	sulfoacetaldehyde degradation I
MA3607	PWY-5482	pyruvate fermentation to acetate II
MA3607	PWY-5485	pyruvate fermentation to acetate IV
MA3607	PWY-5497	purine nucleobases degradation II (anaerobic)
MA3607	PWY-6637	sulfolactate degradation II
MA3613	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA3613	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA3624	PWY-6689	tRNA splicing
MA3631	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA3652	PWY-4981	L-proline biosynthesis II (from arginine)
MA3655	PWY-5839	menaquinol-7 biosynthesis
MA3655	PWY-5844	menaquinol-9 biosynthesis
MA3655	PWY-5849	menaquinol-6 biosynthesis
MA3655	PWY-5890	menaquinol-10 biosynthesis
MA3655	PWY-5891	menaquinol-11 biosynthesis
MA3655	PWY-5892	menaquinol-12 biosynthesis
MA3655	PWY-5895	menaquinol-13 biosynthesis
MA3679	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
MA3680	PWY-6317	galactose degradation I (Leloir pathway)
MA3680	PWY-6527	stachyose degradation
MA3686	PWY-6349	CDP-archaeol biosynthesis
MA3689	PWY-7234	inosine-5'-phosphate biosynthesis III
MA3706	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
MA3709	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
MA3709	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
MA3719	PWY-6012	acyl carrier protein metabolism I
MA3719	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
MA3728	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA3728	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA3730	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA3739	PWY-5674	nitrate reduction IV (dissimilatory)
MA3744	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MA3746	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MA3747	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
MA3747	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
MA3766	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
MA3766	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
MA3777	PWY-3221	dTDP-L-rhamnose biosynthesis II
MA3777	PWY-6808	dTDP-D-forosamine biosynthesis
MA3777	PWY-6942	dTDP-D-desosamine biosynthesis
MA3777	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MA3777	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MA3777	PWY-6974	dTDP-L-olivose biosynthesis
MA3777	PWY-6976	dTDP-L-mycarose biosynthesis
MA3777	PWY-7104	dTDP-L-megosamine biosynthesis
MA3777	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MA3777	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MA3777	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MA3777	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MA3777	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MA3777	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MA3777	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MA3777	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MA3779	PWY-3221	dTDP-L-rhamnose biosynthesis II
MA3779	PWY-6808	dTDP-D-forosamine biosynthesis
MA3779	PWY-6942	dTDP-D-desosamine biosynthesis
MA3779	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
MA3779	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
MA3779	PWY-6974	dTDP-L-olivose biosynthesis
MA3779	PWY-6976	dTDP-L-mycarose biosynthesis
MA3779	PWY-7104	dTDP-L-megosamine biosynthesis
MA3779	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
MA3779	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
MA3779	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
MA3779	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
MA3779	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
MA3779	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
MA3779	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
MA3779	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
MA3781	PWY-5659	GDP-mannose biosynthesis
MA3781	PWY-6073	alginate biosynthesis I (algal)
MA3781	PWY-6082	alginate biosynthesis II (bacterial)
MA3781	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
MA3783	PWY-4202	arsenate detoxification I (glutaredoxin)
MA3787	PWY-101	photosynthesis light reactions
MA3787	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
MA3790	PWY-5101	L-isoleucine biosynthesis II
MA3790	PWY-5103	L-isoleucine biosynthesis III
MA3790	PWY-5104	L-isoleucine biosynthesis IV
MA3790	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MA3791	PWY-5101	L-isoleucine biosynthesis II
MA3791	PWY-5103	L-isoleucine biosynthesis III
MA3791	PWY-5104	L-isoleucine biosynthesis IV
MA3791	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MA3791	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MA3791	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MA3791	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MA3792	PWY-5101	L-isoleucine biosynthesis II
MA3792	PWY-5103	L-isoleucine biosynthesis III
MA3792	PWY-5104	L-isoleucine biosynthesis IV
MA3792	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
MA3792	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
MA3792	PWY-6389	(<i>S</i>)-acetoin biosynthesis
MA3792	PWY-7111	pyruvate fermentation to isobutanol (engineered)
MA3793	PWY-5101	L-isoleucine biosynthesis II
MA3793	PWY-6871	3-methylbutanol biosynthesis
MA3853	PWY-1341	phenylacetate degradation II (anaerobic)
MA3853	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
MA3860	PWY-5372	carbon tetrachloride degradation II
MA3860	PWY-6780	hydrogen production VI
MA3887	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
MA3887	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
MA3887	PWY-6269	adenosylcobalamin salvage from cobinamide II
MA3890	PWY-1042	glycolysis IV (plant cytosol)
MA3890	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA3890	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA3890	PWY-5723	Rubisco shunt
MA3890	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA3890	PWY-6886	1-butanol autotrophic biosynthesis
MA3890	PWY-6901	superpathway of glucose and xylose degradation
MA3890	PWY-7003	glycerol degradation to butanol
MA3890	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA3890	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MA3969	PWY-6349	CDP-archaeol biosynthesis
MA3971	PWY-6123	inosine-5'-phosphate biosynthesis I
MA3971	PWY-6124	inosine-5'-phosphate biosynthesis II
MA3971	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA3971	PWY-7234	inosine-5'-phosphate biosynthesis III
MA3986	PWY-40	putrescine biosynthesis I
MA3986	PWY-6305	putrescine biosynthesis IV
MA4006	PWY-6148	tetrahydromethanopterin biosynthesis
MA4007	PWY-1042	glycolysis IV (plant cytosol)
MA4007	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA4007	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA4007	PWY-5723	Rubisco shunt
MA4007	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA4007	PWY-6886	1-butanol autotrophic biosynthesis
MA4007	PWY-6901	superpathway of glucose and xylose degradation
MA4007	PWY-7003	glycerol degradation to butanol
MA4007	PWY-7124	ethylene biosynthesis V (engineered)
MA4007	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA4012	PWY-6123	inosine-5'-phosphate biosynthesis I
MA4012	PWY-6124	inosine-5'-phosphate biosynthesis II
MA4012	PWY-7234	inosine-5'-phosphate biosynthesis III
MA4017	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MA4017	PWY-5957	L-nicotianamine biosynthesis
MA4018	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
MA4018	PWY-5957	L-nicotianamine biosynthesis
MA4041	PWY-4381	fatty acid biosynthesis initiation I
MA4048	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
MA4055	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
MA4055	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
MA4055	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
MA4063	PWY-6123	inosine-5'-phosphate biosynthesis I
MA4063	PWY-6124	inosine-5'-phosphate biosynthesis II
MA4063	PWY-7234	inosine-5'-phosphate biosynthesis III
MA4087	PWY-6823	molybdenum cofactor biosynthesis
MA4092	PWY-6167	flavin biosynthesis II (archaea)
MA4092	PWY-6168	flavin biosynthesis III (fungi)
MA4102	PWY-3341	L-proline biosynthesis III
MA4102	PWY-4981	L-proline biosynthesis II (from arginine)
MA4102	PWY-6344	L-ornithine degradation II (Stickland reaction)
MA4118	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA4158	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA4159	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
MA4165	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4165	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4176	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA4178	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
MA4191	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
MA4191	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
MA4195	PWY-6823	molybdenum cofactor biosynthesis
MA4197	PWY-6703	preQ<sub>0</sub> biosynthesis
MA4199	PWY-6703	preQ<sub>0</sub> biosynthesis
MA4216	PWY-381	nitrate reduction II (assimilatory)
MA4216	PWY-5675	nitrate reduction V (assimilatory)
MA4216	PWY-6549	L-glutamine biosynthesis III
MA4216	PWY-6963	ammonia assimilation cycle I
MA4216	PWY-6964	ammonia assimilation cycle II
MA4236	PWY-5207	coenzyme B/coenzyme M regeneration
MA4237	PWY-5207	coenzyme B/coenzyme M regeneration
MA4262	PWY-5194	siroheme biosynthesis
MA4262	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA4263	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
MA4264	PWY-6871	3-methylbutanol biosynthesis
MA4329	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
MA4347	PWY-5839	menaquinol-7 biosynthesis
MA4347	PWY-5844	menaquinol-9 biosynthesis
MA4347	PWY-5849	menaquinol-6 biosynthesis
MA4347	PWY-5890	menaquinol-10 biosynthesis
MA4347	PWY-5891	menaquinol-11 biosynthesis
MA4347	PWY-5892	menaquinol-12 biosynthesis
MA4347	PWY-5895	menaquinol-13 biosynthesis
MA4349	PWY-5057	L-valine degradation II
MA4349	PWY-5076	L-leucine degradation III
MA4349	PWY-5078	L-isoleucine degradation II
MA4349	PWY-5101	L-isoleucine biosynthesis II
MA4349	PWY-5103	L-isoleucine biosynthesis III
MA4349	PWY-5104	L-isoleucine biosynthesis IV
MA4349	PWY-5108	L-isoleucine biosynthesis V
MA4350	PWY-6823	molybdenum cofactor biosynthesis
MA4352	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MA4352	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MA4354	PWY-5491	diethylphosphate degradation
MA4355	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4355	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4379	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4379	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4384	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4384	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4399	PWY-5372	carbon tetrachloride degradation II
MA4399	PWY-6780	hydrogen production VI
MA4410	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MA4410	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MA4416	PWY-1042	glycolysis IV (plant cytosol)
MA4416	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
MA4416	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA4416	PWY-5723	Rubisco shunt
MA4416	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA4416	PWY-6886	1-butanol autotrophic biosynthesis
MA4416	PWY-6901	superpathway of glucose and xylose degradation
MA4416	PWY-7003	glycerol degradation to butanol
MA4416	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
MA4416	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
MA4419	PWY-6700	queuosine biosynthesis
MA4419	PWY-6711	archaeosine biosynthesis
MA4430	PWY-5198	factor 420 biosynthesis
MA4433	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
MA4433	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA4433	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA4433	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
MA4433	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MA4433	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA4457	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
MA4459	PWY-3801	sucrose degradation II (sucrose synthase)
MA4459	PWY-6527	stachyose degradation
MA4459	PWY-6981	chitin biosynthesis
MA4459	PWY-7238	sucrose biosynthesis II
MA4459	PWY-7343	UDP-glucose biosynthesis
MA4473	PWY-2941	L-lysine biosynthesis II
MA4473	PWY-2942	L-lysine biosynthesis III
MA4473	PWY-5097	L-lysine biosynthesis VI
MA4474	PWY-2941	L-lysine biosynthesis II
MA4474	PWY-2942	L-lysine biosynthesis III
MA4474	PWY-5097	L-lysine biosynthesis VI
MA4502	PWY-5686	UMP biosynthesis
MA4504	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MA4504	PWY-5686	UMP biosynthesis
MA4511	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MA4515	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
MA4515	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
MA4517	PWY-5663	tetrahydrobiopterin biosynthesis I
MA4517	PWY-5664	tetrahydrobiopterin biosynthesis II
MA4517	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
MA4517	PWY-6703	preQ<sub>0</sub> biosynthesis
MA4517	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
MA4517	PWY-6983	tetrahydrobiopterin biosynthesis III
MA4517	PWY-7442	drosopterin and aurodrosopterin biosynthesis
MA4523	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
MA4543	PWY-3841	folate transformations II
MA4543	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
MA4543	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
MA4543	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
MA4543	PWY-7199	pyrimidine deoxyribonucleosides salvage
MA4543	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
MA4544	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA4555	PWY-5532	adenosine nucleotides degradation IV
MA4555	PWY-5723	Rubisco shunt
MA4558	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4558	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4559	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
MA4559	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
MA4590	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
MA4591	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
MA4592	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
MA4593	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA4593	PWY-6416	quinate degradation II
MA4593	PWY-6707	gallate biosynthesis
MA4594	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
MA4595	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
MA4607	PWY-1042	glycolysis IV (plant cytosol)
MA4607	PWY-5484	glycolysis II (from fructose 6-phosphate)
MA4607	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
MA4607	PWY-7003	glycerol degradation to butanol
MA4608	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
MA4608	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
MA4608	PWY-5686	UMP biosynthesis
MA4615	PWY-6871	3-methylbutanol biosynthesis
MA4631	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
MA4631	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
MA4632	PWY-6700	queuosine biosynthesis
MA4632	PWY-6711	archaeosine biosynthesis
