Msil_0006	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Msil_0006	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Msil_0016	PWY-4041	&gamma;-glutamyl cycle
Msil_0016	PWY-5826	hypoglycin biosynthesis
Msil_0081	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Msil_0082	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Msil_0082	PWY-5739	GDP-D-perosamine biosynthesis
Msil_0082	PWY-5740	GDP-L-colitose biosynthesis
Msil_0082	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Msil_0083	PWY-1281	sulfoacetaldehyde degradation I
Msil_0083	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_0083	PWY-5482	pyruvate fermentation to acetate II
Msil_0083	PWY-5485	pyruvate fermentation to acetate IV
Msil_0083	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_0083	PWY-6637	sulfolactate degradation II
Msil_0083	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_0098	PWY-6157	autoinducer AI-1 biosynthesis
Msil_0102	PWY-4202	arsenate detoxification I (glutaredoxin)
Msil_0102	PWY-4621	arsenate detoxification II (glutaredoxin)
Msil_0107	PWY-6654	phosphopantothenate biosynthesis III
Msil_0110	PWY-6698	oxalate degradation V
Msil_0118	PWY-181	photorespiration
Msil_0120	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_0120	PWY-5723	Rubisco shunt
Msil_0122	PWY-4081	glutathione redox reactions I
Msil_0124	PWY-6164	3-dehydroquinate biosynthesis I
Msil_0130	PWY-5129	sphingolipid biosynthesis (plants)
Msil_0131	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Msil_0137	PWY-5101	L-isoleucine biosynthesis II
Msil_0137	PWY-6871	3-methylbutanol biosynthesis
Msil_0141	PWY-5669	phosphatidylethanolamine biosynthesis I
Msil_0149	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Msil_0161	PWY-2723	trehalose degradation V
Msil_0161	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Msil_0161	PWY-5661	GDP-glucose biosynthesis
Msil_0161	PWY-7238	sucrose biosynthesis II
Msil_0161	PWY-7385	1,3-propanediol biosynthesis (engineered)
Msil_0162	PWY-5392	reductive TCA cycle II
Msil_0162	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_0162	PWY-5690	TCA cycle II (plants and fungi)
Msil_0162	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_0162	PWY-6728	methylaspartate cycle
Msil_0162	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_0162	PWY-7254	TCA cycle VII (acetate-producers)
Msil_0162	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_0167	PWY-4381	fatty acid biosynthesis initiation I
Msil_0167	PWY-5743	3-hydroxypropanoate cycle
Msil_0167	PWY-5744	glyoxylate assimilation
Msil_0167	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_0167	PWY-6679	jadomycin biosynthesis
Msil_0167	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_0178	PWY-6936	seleno-amino acid biosynthesis
Msil_0179	PWY-5344	L-homocysteine biosynthesis
Msil_0179	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Msil_0184	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Msil_0184	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0184	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Msil_0184	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Msil_0184	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0184	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0184	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0184	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Msil_0199	PWY-5386	methylglyoxal degradation I
Msil_0211	PWY-5941	glycogen degradation II (eukaryotic)
Msil_0211	PWY-6724	starch degradation II
Msil_0211	PWY-6737	starch degradation V
Msil_0211	PWY-7238	sucrose biosynthesis II
Msil_0212	PWY-6749	CMP-legionaminate biosynthesis I
Msil_0213	PWY-622	starch biosynthesis
Msil_0214	PWY-622	starch biosynthesis
Msil_0215	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Msil_0215	PWY-622	starch biosynthesis
Msil_0216	PWY-5941	glycogen degradation II (eukaryotic)
Msil_0216	PWY-622	starch biosynthesis
Msil_0216	PWY-6731	starch degradation III
Msil_0216	PWY-6737	starch degradation V
Msil_0216	PWY-7238	sucrose biosynthesis II
Msil_0272	PWY-6703	preQ<sub>0</sub> biosynthesis
Msil_0273	PWY-5381	pyridine nucleotide cycling (plants)
Msil_0283	PWY-5392	reductive TCA cycle II
Msil_0283	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_0283	PWY-5690	TCA cycle II (plants and fungi)
Msil_0283	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_0283	PWY-6728	methylaspartate cycle
Msil_0283	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_0283	PWY-7254	TCA cycle VII (acetate-producers)
Msil_0283	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_0295	PWY-5316	nicotine biosynthesis
Msil_0295	PWY-7342	superpathway of nicotine biosynthesis
Msil_0296	PWY-5316	nicotine biosynthesis
Msil_0296	PWY-7342	superpathway of nicotine biosynthesis
Msil_0297	PWY-5316	nicotine biosynthesis
Msil_0297	PWY-5381	pyridine nucleotide cycling (plants)
Msil_0297	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Msil_0297	PWY-7342	superpathway of nicotine biosynthesis
Msil_0313	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Msil_0313	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Msil_0313	PWY-6897	thiamin salvage II
Msil_0313	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Msil_0313	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Msil_0313	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Msil_0313	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Msil_0317	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Msil_0318	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Msil_0326	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Msil_0335	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Msil_0341	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0343	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0351	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_0351	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_0351	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_0351	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_0356	PWY-5663	tetrahydrobiopterin biosynthesis I
Msil_0356	PWY-5664	tetrahydrobiopterin biosynthesis II
Msil_0356	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Msil_0356	PWY-6703	preQ<sub>0</sub> biosynthesis
Msil_0356	PWY-6983	tetrahydrobiopterin biosynthesis III
Msil_0356	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Msil_0378	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0393	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Msil_0393	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Msil_0396	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_0396	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_0405	PWY-5767	Msil_0405|Msil_0405|YP_002360741.1|GeneID:7093564
Msil_0413	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_0413	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_0413	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_0413	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Msil_0420	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Msil_0420	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Msil_0421	PWY-4061	glutathione-mediated detoxification I
Msil_0421	PWY-6842	glutathione-mediated detoxification II
Msil_0421	PWY-7112	4-hydroxy-2-nonenal detoxification
Msil_0421	PWY-7533	gliotoxin biosynthesis
Msil_0426	PWY-381	nitrate reduction II (assimilatory)
Msil_0426	PWY-5675	nitrate reduction V (assimilatory)
Msil_0426	PWY-6549	L-glutamine biosynthesis III
Msil_0426	PWY-6963	ammonia assimilation cycle I
Msil_0426	PWY-6964	ammonia assimilation cycle II
Msil_0427	PWY-381	nitrate reduction II (assimilatory)
Msil_0427	PWY-5675	nitrate reduction V (assimilatory)
Msil_0427	PWY-6549	L-glutamine biosynthesis III
Msil_0427	PWY-6963	ammonia assimilation cycle I
Msil_0427	PWY-6964	ammonia assimilation cycle II
Msil_0430	PWY-5350	thiosulfate disproportionation III (rhodanese)
Msil_0461	PWY-5392	reductive TCA cycle II
Msil_0461	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_0461	PWY-5690	TCA cycle II (plants and fungi)
Msil_0461	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_0461	PWY-6728	methylaspartate cycle
Msil_0461	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_0461	PWY-7254	TCA cycle VII (acetate-producers)
Msil_0461	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_0474	PWY-6966	methanol oxidation to formaldehyde I
Msil_0488	PWY-6823	molybdenum cofactor biosynthesis
Msil_0488	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_0488	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_0488	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Msil_0501	PWY-6823	molybdenum cofactor biosynthesis
Msil_0505	PWY-5958	acridone alkaloid biosynthesis
Msil_0505	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Msil_0505	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Msil_0506	PWY-5958	acridone alkaloid biosynthesis
Msil_0506	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Msil_0506	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Msil_0508	PWY-1042	glycolysis IV (plant cytosol)
Msil_0508	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_0508	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_0508	PWY-7003	glycerol degradation to butanol
Msil_0510	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Msil_0510	PWY-7177	UTP and CTP dephosphorylation II
Msil_0510	PWY-7185	UTP and CTP dephosphorylation I
Msil_0512	PWY-6700	queuosine biosynthesis
Msil_0515	PWY-1042	glycolysis IV (plant cytosol)
Msil_0515	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_0515	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Msil_0515	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_0515	PWY-5723	Rubisco shunt
Msil_0515	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_0515	PWY-6886	1-butanol autotrophic biosynthesis
Msil_0515	PWY-6901	superpathway of glucose and xylose degradation
Msil_0515	PWY-7003	glycerol degradation to butanol
Msil_0515	PWY-7124	ethylene biosynthesis V (engineered)
Msil_0515	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Msil_0522	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Msil_0522	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Msil_0523	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Msil_0523	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Msil_0523	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Msil_0526	PWY-7560	methylerythritol phosphate pathway II
Msil_0543	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Msil_0543	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0543	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0543	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Msil_0543	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Msil_0543	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Msil_0544	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Msil_0544	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Msil_0559	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0586	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Msil_0600	PWY-3841	folate transformations II
Msil_0600	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0600	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0600	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Msil_0600	PWY-7199	pyrimidine deoxyribonucleosides salvage
Msil_0600	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Msil_0603	PWY-3841	folate transformations II
Msil_0603	PWY-6614	tetrahydrofolate biosynthesis
Msil_0614	PWY-7205	CMP phosphorylation
Msil_0615	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_0652	PWY-4381	fatty acid biosynthesis initiation I
Msil_0658	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Msil_0658	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Msil_0658	PWY-6896	thiamin salvage I
Msil_0658	PWY-6897	thiamin salvage II
Msil_0660	PWY-6167	flavin biosynthesis II (archaea)
Msil_0660	PWY-6168	flavin biosynthesis III (fungi)
Msil_0672	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_0672	PWY-5686	UMP biosynthesis
Msil_0672	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_0679	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Msil_0682	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Msil_0682	PWY-6167	flavin biosynthesis II (archaea)
Msil_0682	PWY-6168	flavin biosynthesis III (fungi)
Msil_0683	PWY-6871	3-methylbutanol biosynthesis
Msil_0698	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Msil_0698	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Msil_0708	PWY-6749	CMP-legionaminate biosynthesis I
Msil_0709	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Msil_0716	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_0716	PWY-6549	L-glutamine biosynthesis III
Msil_0716	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_0716	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_0717	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_0717	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_0717	PWY-7560	methylerythritol phosphate pathway II
Msil_0722	PWY-6698	oxalate degradation V
Msil_0733	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_0733	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_0738	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Msil_0759	PWY-5669	phosphatidylethanolamine biosynthesis I
Msil_0777	PWY-6749	CMP-legionaminate biosynthesis I
Msil_0814	PWY-7560	methylerythritol phosphate pathway II
Msil_0822	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_0822	PWY-5723	Rubisco shunt
Msil_0831	PWY-4981	L-proline biosynthesis II (from arginine)
Msil_0831	PWY-4984	urea cycle
Msil_0831	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_0845	PWY-6167	flavin biosynthesis II (archaea)
Msil_0845	PWY-6168	flavin biosynthesis III (fungi)
Msil_0845	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Msil_0846	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_0848	PWY-2941	L-lysine biosynthesis II
Msil_0848	PWY-2942	L-lysine biosynthesis III
Msil_0848	PWY-5097	L-lysine biosynthesis VI
Msil_0879	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Msil_0895	PWY-5367	petroselinate biosynthesis
Msil_0895	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_0895	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_0895	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_0895	PWY-5994	palmitate biosynthesis I (animals and fungi)
Msil_0895	PWY-6113	superpathway of mycolate biosynthesis
Msil_0895	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_0895	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_0895	PWY-6951	Msil_0895|Msil_0895|YP_002361227.1|GeneID:7093329
Msil_0895	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Msil_0895	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_0895	PWYG-321	mycolate biosynthesis
Msil_0896	PWY-4381	fatty acid biosynthesis initiation I
Msil_0896	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Msil_0896	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_0925	PWY-5667	CDP-diacylglycerol biosynthesis I
Msil_0925	PWY-5981	CDP-diacylglycerol biosynthesis III
Msil_0931	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Msil_0962	PWY-5269	cardiolipin biosynthesis II
Msil_0962	PWY-5668	cardiolipin biosynthesis I
Msil_0963	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_0963	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_0963	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_0964	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_0964	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Msil_0968	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Msil_0968	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Msil_0968	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0968	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0968	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Msil_0968	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Msil_0968	PWY-7205	CMP phosphorylation
Msil_0968	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Msil_0968	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0968	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0968	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_0968	PWY-7224	purine deoxyribonucleosides salvage
Msil_0968	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_0968	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Msil_0976	PWY-6823	molybdenum cofactor biosynthesis
Msil_0988	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Msil_0993	PWY-6012	acyl carrier protein metabolism I
Msil_0993	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Msil_1003	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_1003	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_1003	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_1003	PWY-6113	superpathway of mycolate biosynthesis
Msil_1003	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_1003	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_1003	PWY-7096	triclosan resistance
Msil_1003	PWYG-321	mycolate biosynthesis
Msil_1007	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_1012	PWY-1361	benzoyl-CoA degradation I (aerobic)
Msil_1012	PWY-5109	2-methylbutanoate biosynthesis
Msil_1012	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Msil_1012	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Msil_1012	PWY-5177	glutaryl-CoA degradation
Msil_1012	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_1012	PWY-6435	4-hydroxybenzoate biosynthesis V
Msil_1012	PWY-6583	pyruvate fermentation to butanol I
Msil_1012	PWY-6863	pyruvate fermentation to hexanol
Msil_1012	PWY-6883	pyruvate fermentation to butanol II
Msil_1012	PWY-6944	androstenedione degradation
Msil_1012	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Msil_1012	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Msil_1012	PWY-7007	methyl ketone biosynthesis
Msil_1012	PWY-7046	4-coumarate degradation (anaerobic)
Msil_1012	PWY-7094	fatty acid salvage
Msil_1012	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Msil_1012	PWY-735	jasmonic acid biosynthesis
Msil_1012	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Msil_1014	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1017	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_1022	PWY-5155	&beta;-alanine biosynthesis III
Msil_1023	PWY-5344	L-homocysteine biosynthesis
Msil_1055	PWY-6823	molybdenum cofactor biosynthesis
Msil_1088	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Msil_1088	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Msil_1091	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1095	PWY-6123	inosine-5'-phosphate biosynthesis I
Msil_1095	PWY-6124	inosine-5'-phosphate biosynthesis II
Msil_1095	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_1095	PWY-7234	inosine-5'-phosphate biosynthesis III
Msil_1099	PWY-5686	UMP biosynthesis
Msil_1118	PWY-7560	methylerythritol phosphate pathway II
Msil_1123	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Msil_1123	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Msil_1123	PWY-7242	D-fructuronate degradation
Msil_1123	PWY-7310	D-glucosaminate degradation
Msil_1124	PWY-5101	L-isoleucine biosynthesis II
Msil_1124	PWY-5103	L-isoleucine biosynthesis III
Msil_1124	PWY-5104	L-isoleucine biosynthesis IV
Msil_1124	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_1125	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Msil_1126	PWY-5988	wound-induced proteolysis I
Msil_1126	PWY-6018	seed germination protein turnover
Msil_1138	PWY-3341	L-proline biosynthesis III
Msil_1138	PWY-4981	L-proline biosynthesis II (from arginine)
Msil_1138	PWY-6344	L-ornithine degradation II (Stickland reaction)
Msil_1149	PWY-6420	pyrroloquinoline quinone biosynthesis
Msil_1161	PWY-6167	flavin biosynthesis II (archaea)
Msil_1167	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Msil_1167	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
Msil_1179	PWY-6123	inosine-5'-phosphate biosynthesis I
Msil_1179	PWY-6124	inosine-5'-phosphate biosynthesis II
Msil_1179	PWY-7234	inosine-5'-phosphate biosynthesis III
Msil_1180	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_1180	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_1180	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_1181	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_1181	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_1181	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_1184	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_1184	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_1184	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_1188	PWY-4983	L-citrulline-nitric oxide cycle
Msil_1188	PWY-4984	urea cycle
Msil_1188	PWY-5	canavanine biosynthesis
Msil_1188	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1188	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_1191	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_1192	PWY-5723	Rubisco shunt
Msil_1193	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_1193	PWY-5723	Rubisco shunt
Msil_1193	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_1193	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_1193	PWY-6901	superpathway of glucose and xylose degradation
Msil_1193	PWY-7560	methylerythritol phosphate pathway II
Msil_1194	PWY-1042	glycolysis IV (plant cytosol)
Msil_1194	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_1194	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_1194	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_1194	PWY-7385	1,3-propanediol biosynthesis (engineered)
Msil_1195	PWY-5532	adenosine nucleotides degradation IV
Msil_1195	PWY-5723	Rubisco shunt
Msil_1196	PWY-5532	adenosine nucleotides degradation IV
Msil_1196	PWY-5723	Rubisco shunt
Msil_1198	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_1198	PWY-5723	Rubisco shunt
Msil_1203	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1203	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_1207	PWY-3461	L-tyrosine biosynthesis II
Msil_1207	PWY-3462	L-phenylalanine biosynthesis II
Msil_1207	PWY-6120	L-tyrosine biosynthesis III
Msil_1207	PWY-6627	salinosporamide A biosynthesis
Msil_1209	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Msil_1226	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Msil_1226	PWY-7118	chitin degradation to ethanol
Msil_1238	PWY-3781	aerobic respiration I (cytochrome c)
Msil_1238	PWY-4521	arsenite oxidation I (respiratory)
Msil_1238	PWY-6692	Fe(II) oxidation
Msil_1238	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_1244	PWY-5532	adenosine nucleotides degradation IV
Msil_1244	PWY-5723	Rubisco shunt
Msil_1259	PWY-702	L-methionine biosynthesis II
Msil_1265	PWY-1641	methane oxidation to methanol I
Msil_1317	PWY-5686	UMP biosynthesis
Msil_1318	PWY-723	alkylnitronates degradation
Msil_1325	PWY-6728	methylaspartate cycle
Msil_1325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_1325	PWY-7118	chitin degradation to ethanol
Msil_1325	PWY-7294	xylose degradation IV
Msil_1325	PWY-7295	L-arabinose degradation IV
Msil_1328	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Msil_1328	PWY-6596	adenosine nucleotides degradation I
Msil_1328	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Msil_1338	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_1338	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Msil_1338	PWY-6269	adenosylcobalamin salvage from cobinamide II
Msil_1340	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_1340	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Msil_1340	PWY-6269	adenosylcobalamin salvage from cobinamide II
Msil_1345	PWY-5381	pyridine nucleotide cycling (plants)
Msil_1345	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Msil_1345	PWY-6596	adenosine nucleotides degradation I
Msil_1345	PWY-6606	guanosine nucleotides degradation II
Msil_1345	PWY-6607	guanosine nucleotides degradation I
Msil_1345	PWY-6608	guanosine nucleotides degradation III
Msil_1345	PWY-7185	UTP and CTP dephosphorylation I
Msil_1360	PWY-5750	itaconate biosynthesis
Msil_1360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_1360	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Msil_1375	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_1375	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_1382	PWY-4983	L-citrulline-nitric oxide cycle
Msil_1382	PWY-4984	urea cycle
Msil_1382	PWY-5	canavanine biosynthesis
Msil_1382	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1382	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_1395	PWY-1361	benzoyl-CoA degradation I (aerobic)
Msil_1395	PWY-5109	2-methylbutanoate biosynthesis
Msil_1395	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Msil_1395	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Msil_1395	PWY-5177	glutaryl-CoA degradation
Msil_1395	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_1395	PWY-6435	4-hydroxybenzoate biosynthesis V
Msil_1395	PWY-6583	pyruvate fermentation to butanol I
Msil_1395	PWY-6863	pyruvate fermentation to hexanol
Msil_1395	PWY-6883	pyruvate fermentation to butanol II
Msil_1395	PWY-6944	androstenedione degradation
Msil_1395	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Msil_1395	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Msil_1395	PWY-7007	methyl ketone biosynthesis
Msil_1395	PWY-7046	4-coumarate degradation (anaerobic)
Msil_1395	PWY-7094	fatty acid salvage
Msil_1395	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Msil_1395	PWY-735	jasmonic acid biosynthesis
Msil_1395	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Msil_1403	PWY-4381	fatty acid biosynthesis initiation I
Msil_1403	PWY-5743	3-hydroxypropanoate cycle
Msil_1403	PWY-5744	glyoxylate assimilation
Msil_1403	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_1403	PWY-6679	jadomycin biosynthesis
Msil_1403	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_1404	PWY-2161	folate polyglutamylation
Msil_1410	PWY-6703	preQ<sub>0</sub> biosynthesis
Msil_1416	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_1416	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_1417	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Msil_1417	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Msil_1417	PWY-6897	thiamin salvage II
Msil_1417	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Msil_1417	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Msil_1417	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Msil_1417	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Msil_1429	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_1429	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_1435	PWY-5269	cardiolipin biosynthesis II
Msil_1435	PWY-5668	cardiolipin biosynthesis I
Msil_1437	PWY-6823	molybdenum cofactor biosynthesis
Msil_1474	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
Msil_1474	PWY-5641	2-nitrotoluene degradation
Msil_1478	PWY-5162	2-oxopentenoate degradation
Msil_1478	PWY-5436	L-threonine degradation IV
Msil_1478	PWY-5480	pyruvate fermentation to ethanol I
Msil_1478	PWY-6587	pyruvate fermentation to ethanol III
Msil_1478	PWY-7085	triethylamine degradation
Msil_1478	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Msil_1479	PWY-5162	2-oxopentenoate degradation
Msil_1502	PWY-5129	sphingolipid biosynthesis (plants)
Msil_1516	PWY-3781	aerobic respiration I (cytochrome c)
Msil_1516	PWY-4521	arsenite oxidation I (respiratory)
Msil_1516	PWY-6692	Fe(II) oxidation
Msil_1516	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_1519	PWY-6523	nitrite-dependent anaerobic methane oxidation
Msil_1519	PWY-6748	nitrate reduction VII (denitrification)
Msil_1519	PWY-7084	nitrifier denitrification
Msil_1561	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Msil_1561	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Msil_1561	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Msil_1561	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Msil_1561	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Msil_1561	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Msil_1561	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Msil_1561	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Msil_1561	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Msil_1561	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Msil_1562	PWY-2941	L-lysine biosynthesis II
Msil_1562	PWY-2942	L-lysine biosynthesis III
Msil_1562	PWY-5097	L-lysine biosynthesis VI
Msil_1562	PWY-6559	spermidine biosynthesis II
Msil_1562	PWY-6562	norspermidine biosynthesis
Msil_1562	PWY-7153	grixazone biosynthesis
Msil_1571	PWY-6123	inosine-5'-phosphate biosynthesis I
Msil_1571	PWY-6124	inosine-5'-phosphate biosynthesis II
Msil_1571	PWY-7234	inosine-5'-phosphate biosynthesis III
Msil_1580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Msil_1580	PWY-6148	tetrahydromethanopterin biosynthesis
Msil_1580	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Msil_1580	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Msil_1581	PWY-6614	tetrahydrofolate biosynthesis
Msil_1595	PWY-5659	GDP-mannose biosynthesis
Msil_1595	PWY-6073	alginate biosynthesis I (algal)
Msil_1595	PWY-6082	alginate biosynthesis II (bacterial)
Msil_1595	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Msil_1609	PWY-6823	molybdenum cofactor biosynthesis
Msil_1609	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_1609	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_1609	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Msil_1615	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_1615	PWY-6549	L-glutamine biosynthesis III
Msil_1615	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_1615	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_1622	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1622	PWY-5686	UMP biosynthesis
Msil_1622	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_1625	PWY-6654	phosphopantothenate biosynthesis III
Msil_1629	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_1629	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Msil_1639	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_1639	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_1639	PWY-7560	methylerythritol phosphate pathway II
Msil_1642	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Msil_1657	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_1659	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Msil_1659	PWY-6853	ethylene biosynthesis II (microbes)
Msil_1659	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Msil_1660	PWY-3341	L-proline biosynthesis III
Msil_1660	PWY-4981	L-proline biosynthesis II (from arginine)
Msil_1660	PWY-6344	L-ornithine degradation II (Stickland reaction)
Msil_1660	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Msil_1676	PWY-6854	ethylene biosynthesis III (microbes)
Msil_1680	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Msil_1695	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_1695	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_1707	PWY-6936	seleno-amino acid biosynthesis
Msil_1712	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Msil_1712	PWY-2161	folate polyglutamylation
Msil_1712	PWY-2201	folate transformations I
Msil_1712	PWY-3841	folate transformations II
Msil_1714	PWY-6832	2-aminoethylphosphonate degradation II
Msil_1716	PWY-5392	reductive TCA cycle II
Msil_1716	PWY-5537	pyruvate fermentation to acetate V
Msil_1716	PWY-5538	pyruvate fermentation to acetate VI
Msil_1716	PWY-5690	TCA cycle II (plants and fungi)
Msil_1716	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_1716	PWY-6728	methylaspartate cycle
Msil_1716	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_1716	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_1717	PWY-5392	reductive TCA cycle II
Msil_1717	PWY-5537	pyruvate fermentation to acetate V
Msil_1717	PWY-5538	pyruvate fermentation to acetate VI
Msil_1717	PWY-5690	TCA cycle II (plants and fungi)
Msil_1717	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_1717	PWY-6728	methylaspartate cycle
Msil_1717	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_1717	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_1718	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_1718	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_1718	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_1718	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_1718	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Msil_1718	PWY-6549	L-glutamine biosynthesis III
Msil_1718	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_1718	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_1718	PWY-7124	ethylene biosynthesis V (engineered)
Msil_1721	PWY-5839	menaquinol-7 biosynthesis
Msil_1721	PWY-5844	menaquinol-9 biosynthesis
Msil_1721	PWY-5849	menaquinol-6 biosynthesis
Msil_1721	PWY-5890	menaquinol-10 biosynthesis
Msil_1721	PWY-5891	menaquinol-11 biosynthesis
Msil_1721	PWY-5892	menaquinol-12 biosynthesis
Msil_1721	PWY-5895	menaquinol-13 biosynthesis
Msil_1724	PWY-3781	aerobic respiration I (cytochrome c)
Msil_1724	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Msil_1724	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_1724	PWY-5690	TCA cycle II (plants and fungi)
Msil_1724	PWY-6728	methylaspartate cycle
Msil_1724	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_1724	PWY-7254	TCA cycle VII (acetate-producers)
Msil_1724	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_1725	PWY-3781	aerobic respiration I (cytochrome c)
Msil_1725	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Msil_1725	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_1725	PWY-5690	TCA cycle II (plants and fungi)
Msil_1725	PWY-6728	methylaspartate cycle
Msil_1725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_1725	PWY-7254	TCA cycle VII (acetate-producers)
Msil_1725	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_1739	PWY-6420	pyrroloquinoline quinone biosynthesis
Msil_1742	PWY-1361	benzoyl-CoA degradation I (aerobic)
Msil_1742	PWY-5109	2-methylbutanoate biosynthesis
Msil_1742	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Msil_1742	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Msil_1742	PWY-5177	glutaryl-CoA degradation
Msil_1742	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_1742	PWY-6435	4-hydroxybenzoate biosynthesis V
Msil_1742	PWY-6583	pyruvate fermentation to butanol I
Msil_1742	PWY-6863	pyruvate fermentation to hexanol
Msil_1742	PWY-6883	pyruvate fermentation to butanol II
Msil_1742	PWY-6944	androstenedione degradation
Msil_1742	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Msil_1742	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Msil_1742	PWY-7007	methyl ketone biosynthesis
Msil_1742	PWY-7046	4-coumarate degradation (anaerobic)
Msil_1742	PWY-7094	fatty acid salvage
Msil_1742	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Msil_1742	PWY-735	jasmonic acid biosynthesis
Msil_1742	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Msil_1778	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_1778	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Msil_1778	PWY-6269	adenosylcobalamin salvage from cobinamide II
Msil_1779	PWY-5278	sulfite oxidation III
Msil_1779	PWY-5340	sulfate activation for sulfonation
Msil_1779	PWY-6683	sulfate reduction III (assimilatory)
Msil_1779	PWY-6932	selenate reduction
Msil_1780	PWY-5278	sulfite oxidation III
Msil_1780	PWY-5340	sulfate activation for sulfonation
Msil_1780	PWY-6683	sulfate reduction III (assimilatory)
Msil_1780	PWY-6932	selenate reduction
Msil_1785	PWY-6683	sulfate reduction III (assimilatory)
Msil_1794	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Msil_1794	PWY-6855	chitin degradation I (archaea)
Msil_1794	PWY-6906	chitin derivatives degradation
Msil_1797	PWY-6556	pyrimidine ribonucleosides salvage II
Msil_1797	PWY-7181	pyrimidine deoxyribonucleosides degradation
Msil_1797	PWY-7193	pyrimidine ribonucleosides salvage I
Msil_1797	PWY-7199	pyrimidine deoxyribonucleosides salvage
Msil_1799	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
Msil_1799	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_1819	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_1819	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_1819	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_1819	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_1819	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Msil_1819	PWY-6549	L-glutamine biosynthesis III
Msil_1819	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_1819	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_1819	PWY-7124	ethylene biosynthesis V (engineered)
Msil_1833	PWY-6840	homoglutathione biosynthesis
Msil_1833	PWY-7255	ergothioneine biosynthesis I (bacteria)
Msil_1850	PWY-2941	L-lysine biosynthesis II
Msil_1850	PWY-5097	L-lysine biosynthesis VI
Msil_1859	PWY-3801	sucrose degradation II (sucrose synthase)
Msil_1859	PWY-5054	sorbitol biosynthesis I
Msil_1859	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Msil_1859	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Msil_1859	PWY-5659	GDP-mannose biosynthesis
Msil_1859	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_1859	PWY-621	sucrose degradation III (sucrose invertase)
Msil_1859	PWY-622	starch biosynthesis
Msil_1859	PWY-6531	mannitol cycle
Msil_1859	PWY-6981	chitin biosynthesis
Msil_1859	PWY-7238	sucrose biosynthesis II
Msil_1859	PWY-7347	sucrose biosynthesis III
Msil_1859	PWY-7385	1,3-propanediol biosynthesis (engineered)
Msil_1869	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_1869	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_1881	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Msil_1881	PWY-2201	folate transformations I
Msil_1881	PWY-3841	folate transformations II
Msil_1881	PWY-5030	L-histidine degradation III
Msil_1881	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_1881	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Msil_1898	PWY-5386	methylglyoxal degradation I
Msil_2011	PWY-5704	urea degradation II
Msil_2012	PWY-5704	urea degradation II
Msil_2013	PWY-5704	urea degradation II
Msil_2021	PWY-5874	heme degradation
Msil_2021	PWY-5915	phycoerythrobilin biosynthesis I
Msil_2021	PWY-5917	phycocyanobilin biosynthesis
Msil_2021	PWY-7170	phytochromobilin biosynthesis
Msil_2030	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Msil_2030	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
Msil_2038	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2038	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2039	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2039	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2040	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2040	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2041	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2041	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2042	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2042	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2052	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Msil_2053	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Msil_2053	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2053	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2054	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Msil_2054	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2054	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2058	PWY-101	photosynthesis light reactions
Msil_2058	PWY-6785	hydrogen production VIII
Msil_2059	PWY-101	photosynthesis light reactions
Msil_2059	PWY-6785	hydrogen production VIII
Msil_2065	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2065	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2068	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2068	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2091	PWY-5506	methanol oxidation to formaldehyde IV
Msil_2107	PWY-6167	flavin biosynthesis II (archaea)
Msil_2107	PWY-6168	flavin biosynthesis III (fungi)
Msil_2107	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_2110	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_2110	PWY-181	photorespiration
Msil_2110	PWY-2161	folate polyglutamylation
Msil_2110	PWY-2201	folate transformations I
Msil_2110	PWY-3661	glycine betaine degradation I
Msil_2110	PWY-3661-1	glycine betaine degradation II (mammalian)
Msil_2110	PWY-3841	folate transformations II
Msil_2110	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_2114	PWY-5451	acetone degradation I (to methylglyoxal)
Msil_2114	PWY-6588	pyruvate fermentation to acetone
Msil_2114	PWY-6876	isopropanol biosynthesis
Msil_2114	PWY-7466	acetone degradation III (to propane-1,2-diol)
Msil_2119	PWY-6454	vancomycin resistance I
Msil_2119	PWY-6455	vancomycin resistance II
Msil_2133	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Msil_2146	PWY-6605	adenine and adenosine salvage II
Msil_2146	PWY-6610	adenine and adenosine salvage IV
Msil_2152	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Msil_2163	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_2163	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_2183	PWY-6698	oxalate degradation V
Msil_2186	PWY-5451	acetone degradation I (to methylglyoxal)
Msil_2186	PWY-6588	pyruvate fermentation to acetone
Msil_2186	PWY-6876	isopropanol biosynthesis
Msil_2186	PWY-7466	acetone degradation III (to propane-1,2-diol)
Msil_2204	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_2204	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_2204	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_2204	PWY-6113	superpathway of mycolate biosynthesis
Msil_2204	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_2204	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_2204	PWY-7096	triclosan resistance
Msil_2204	PWYG-321	mycolate biosynthesis
Msil_2206	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_2206	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_2206	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_2206	PWY-5994	palmitate biosynthesis I (animals and fungi)
Msil_2206	PWY-6113	superpathway of mycolate biosynthesis
Msil_2206	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_2206	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_2206	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_2206	PWYG-321	mycolate biosynthesis
Msil_2221	PWY-5988	wound-induced proteolysis I
Msil_2221	PWY-6018	seed germination protein turnover
Msil_2229	PWY-6938	NADH repair
Msil_2240	PWY-5839	menaquinol-7 biosynthesis
Msil_2240	PWY-5844	menaquinol-9 biosynthesis
Msil_2240	PWY-5849	menaquinol-6 biosynthesis
Msil_2240	PWY-5890	menaquinol-10 biosynthesis
Msil_2240	PWY-5891	menaquinol-11 biosynthesis
Msil_2240	PWY-5892	menaquinol-12 biosynthesis
Msil_2240	PWY-5895	menaquinol-13 biosynthesis
Msil_2243	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Msil_2243	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Msil_2243	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Msil_2243	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Msil_2251	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Msil_2254	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Msil_2254	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Msil_2254	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Msil_2282	PWY-1042	glycolysis IV (plant cytosol)
Msil_2282	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_2282	PWY-6901	superpathway of glucose and xylose degradation
Msil_2282	PWY-7003	glycerol degradation to butanol
Msil_2283	PWY-1042	glycolysis IV (plant cytosol)
Msil_2283	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_2283	PWY-6886	1-butanol autotrophic biosynthesis
Msil_2283	PWY-6901	superpathway of glucose and xylose degradation
Msil_2283	PWY-7003	glycerol degradation to butanol
Msil_2289	PWY-6123	inosine-5'-phosphate biosynthesis I
Msil_2289	PWY-7234	inosine-5'-phosphate biosynthesis III
Msil_2299	PWY-5491	diethylphosphate degradation
Msil_2318	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_2318	PWY-6164	3-dehydroquinate biosynthesis I
Msil_2320	PWY-5941	glycogen degradation II (eukaryotic)
Msil_2320	PWY-6724	starch degradation II
Msil_2320	PWY-6737	starch degradation V
Msil_2320	PWY-7238	sucrose biosynthesis II
Msil_2329	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Msil_2384	PWY-6148	tetrahydromethanopterin biosynthesis
Msil_2389	PWY-5796	malonate decarboxylase activation
Msil_2390	PWY-1723	formaldehyde oxidation V (H<sub>4</sub>MPT pathway)
Msil_2390	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Msil_2396	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Msil_2396	PWY-6148	tetrahydromethanopterin biosynthesis
Msil_2396	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Msil_2396	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Msil_2397	PWY-5958	acridone alkaloid biosynthesis
Msil_2397	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Msil_2397	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Msil_2398	PWY-5958	acridone alkaloid biosynthesis
Msil_2398	PWY-6543	4-aminobenzoate biosynthesis
Msil_2398	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Msil_2398	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Msil_2398	PWY-6722	candicidin biosynthesis
Msil_2403	PWY-5209	methyl-coenzyme M oxidation to CO<sub>2</sub>
Msil_2406	PWY-7158	L-phenylalanine degradation V
Msil_2426	PWY-6683	sulfate reduction III (assimilatory)
Msil_2427	PWY-6683	sulfate reduction III (assimilatory)
Msil_2439	PWY-3162	L-tryptophan degradation V (side chain pathway)
Msil_2439	PWY-5057	L-valine degradation II
Msil_2439	PWY-5076	L-leucine degradation III
Msil_2439	PWY-5078	L-isoleucine degradation II
Msil_2439	PWY-5079	L-phenylalanine degradation III
Msil_2439	PWY-5082	L-methionine degradation III
Msil_2439	PWY-5480	pyruvate fermentation to ethanol I
Msil_2439	PWY-5486	pyruvate fermentation to ethanol II
Msil_2439	PWY-5751	phenylethanol biosynthesis
Msil_2439	PWY-6028	acetoin degradation
Msil_2439	PWY-6313	serotonin degradation
Msil_2439	PWY-6333	acetaldehyde biosynthesis I
Msil_2439	PWY-6342	noradrenaline and adrenaline degradation
Msil_2439	PWY-6587	pyruvate fermentation to ethanol III
Msil_2439	PWY-6802	salidroside biosynthesis
Msil_2439	PWY-6871	3-methylbutanol biosynthesis
Msil_2439	PWY-7013	L-1,2-propanediol degradation
Msil_2439	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_2439	PWY-7118	chitin degradation to ethanol
Msil_2439	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Msil_2439	PWY-7557	dehydrodiconiferyl alcohol degradation
Msil_2465	PWY-5506	methanol oxidation to formaldehyde IV
Msil_2478	PWY-5344	L-homocysteine biosynthesis
Msil_2490	PWY-4381	fatty acid biosynthesis initiation I
Msil_2501	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_2501	PWY-5392	reductive TCA cycle II
Msil_2501	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_2501	PWY-5690	TCA cycle II (plants and fungi)
Msil_2501	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_2501	PWY-6728	methylaspartate cycle
Msil_2501	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_2501	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_2501	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Msil_2503	PWY-5392	reductive TCA cycle II
Msil_2503	PWY-5537	pyruvate fermentation to acetate V
Msil_2503	PWY-5538	pyruvate fermentation to acetate VI
Msil_2503	PWY-5690	TCA cycle II (plants and fungi)
Msil_2503	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_2503	PWY-6728	methylaspartate cycle
Msil_2503	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_2503	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_2504	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Msil_2505	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Msil_2506	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Msil_2506	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Msil_2509	PWY-5057	L-valine degradation II
Msil_2509	PWY-5076	L-leucine degradation III
Msil_2509	PWY-5078	L-isoleucine degradation II
Msil_2509	PWY-5101	L-isoleucine biosynthesis II
Msil_2509	PWY-5103	L-isoleucine biosynthesis III
Msil_2509	PWY-5104	L-isoleucine biosynthesis IV
Msil_2509	PWY-5108	L-isoleucine biosynthesis V
Msil_2520	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_2532	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Msil_2534	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_2534	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_2537	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_2541	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_2541	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_2547	PWY-3961	phosphopantothenate biosynthesis II
Msil_2557	PWY-2582	brassinosteroid biosynthesis II
Msil_2557	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Msil_2557	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Msil_2557	PWY-6948	sitosterol degradation to androstenedione
Msil_2557	PWY-699	brassinosteroid biosynthesis I
Msil_2557	PWY-7299	progesterone biosynthesis
Msil_2565	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Msil_2565	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Msil_2600	PWY-6654	phosphopantothenate biosynthesis III
Msil_2607	PWY-5169	cyanurate degradation
Msil_2607	PWY-5703	urea degradation I
Msil_2607	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Msil_2635	PWY-381	nitrate reduction II (assimilatory)
Msil_2635	PWY-5675	nitrate reduction V (assimilatory)
Msil_2635	PWY-6549	L-glutamine biosynthesis III
Msil_2635	PWY-6963	ammonia assimilation cycle I
Msil_2635	PWY-6964	ammonia assimilation cycle II
Msil_2636	PWY-3661	glycine betaine degradation I
Msil_2636	PWY-4722	creatinine degradation II
Msil_2637	PWY-3661	glycine betaine degradation I
Msil_2637	PWY-4722	creatinine degradation II
Msil_2638	PWY-3661	glycine betaine degradation I
Msil_2638	PWY-4722	creatinine degradation II
Msil_2639	PWY-3661	glycine betaine degradation I
Msil_2639	PWY-4722	creatinine degradation II
Msil_2640	PWY-3841	folate transformations II
Msil_2640	PWY-6614	tetrahydrofolate biosynthesis
Msil_2674	PWY-5331	taurine biosynthesis
Msil_2678	PWY-6698	oxalate degradation V
Msil_2688	PWY-6825	phosphatidylcholine biosynthesis V
Msil_2705	PWY-1281	sulfoacetaldehyde degradation I
Msil_2705	PWY-5482	pyruvate fermentation to acetate II
Msil_2705	PWY-5485	pyruvate fermentation to acetate IV
Msil_2705	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_2705	PWY-6637	sulfolactate degradation II
Msil_2706	PWY-5482	pyruvate fermentation to acetate II
Msil_2706	PWY-5485	pyruvate fermentation to acetate IV
Msil_2706	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_2709	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_2709	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_2709	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_2709	PWY-6113	superpathway of mycolate biosynthesis
Msil_2709	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_2709	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_2709	PWY-7096	triclosan resistance
Msil_2709	PWYG-321	mycolate biosynthesis
Msil_2711	PWY-3221	dTDP-L-rhamnose biosynthesis II
Msil_2711	PWY-6808	dTDP-D-forosamine biosynthesis
Msil_2711	PWY-6942	dTDP-D-desosamine biosynthesis
Msil_2711	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Msil_2711	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Msil_2711	PWY-6974	dTDP-L-olivose biosynthesis
Msil_2711	PWY-6976	dTDP-L-mycarose biosynthesis
Msil_2711	PWY-7104	dTDP-L-megosamine biosynthesis
Msil_2711	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Msil_2711	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Msil_2711	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Msil_2711	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Msil_2711	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Msil_2711	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Msil_2711	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Msil_2711	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Msil_2713	PWY-3221	dTDP-L-rhamnose biosynthesis II
Msil_2713	PWY-6808	dTDP-D-forosamine biosynthesis
Msil_2713	PWY-6942	dTDP-D-desosamine biosynthesis
Msil_2713	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Msil_2713	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Msil_2713	PWY-6974	dTDP-L-olivose biosynthesis
Msil_2713	PWY-6976	dTDP-L-mycarose biosynthesis
Msil_2713	PWY-7104	dTDP-L-megosamine biosynthesis
Msil_2713	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Msil_2713	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Msil_2713	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Msil_2713	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Msil_2713	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Msil_2713	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Msil_2713	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Msil_2713	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Msil_2750	PWY-5382	hydrogen oxidation II (aerobic, NAD)
Msil_2750	PWY-6758	hydrogen production II
Msil_2753	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_2753	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_2753	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_2753	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_2810	PWY-6749	CMP-legionaminate biosynthesis I
Msil_2871	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Msil_2871	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Msil_2871	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Msil_2887	PWY-6829	tRNA methylation (yeast)
Msil_2887	PWY-7285	methylwyosine biosynthesis
Msil_2887	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Msil_2930	PWY-3781	aerobic respiration I (cytochrome c)
Msil_2930	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Msil_2930	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Msil_2930	PWY-6692	Fe(II) oxidation
Msil_2932	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Msil_2932	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Msil_2934	PWY-5743	3-hydroxypropanoate cycle
Msil_2934	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_2934	PWY-6728	methylaspartate cycle
Msil_2934	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_2958	PWY-5686	UMP biosynthesis
Msil_2959	PWY-2941	L-lysine biosynthesis II
Msil_2959	PWY-2942	L-lysine biosynthesis III
Msil_2959	PWY-5097	L-lysine biosynthesis VI
Msil_2975	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_2975	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_2975	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_2975	PWY-6113	superpathway of mycolate biosynthesis
Msil_2975	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_2975	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_2975	PWY-7096	triclosan resistance
Msil_2975	PWYG-321	mycolate biosynthesis
Msil_2977	PWY-1281	sulfoacetaldehyde degradation I
Msil_2977	PWY-5482	pyruvate fermentation to acetate II
Msil_2977	PWY-5485	pyruvate fermentation to acetate IV
Msil_2977	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_2977	PWY-6637	sulfolactate degradation II
Msil_2978	PWY-5482	pyruvate fermentation to acetate II
Msil_2978	PWY-5485	pyruvate fermentation to acetate IV
Msil_2978	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_2997	PWY-5676	acetyl-CoA fermentation to butanoate II
Msil_2997	PWY-5741	ethylmalonyl-CoA pathway
Msil_2997	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Msil_2999	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Msil_3008	PWY-7425	2-chloroacrylate degradation I
Msil_3009	PWY-5101	L-isoleucine biosynthesis II
Msil_3009	PWY-5103	L-isoleucine biosynthesis III
Msil_3009	PWY-5104	L-isoleucine biosynthesis IV
Msil_3009	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Msil_3009	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Msil_3009	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Msil_3009	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_3010	PWY-5101	L-isoleucine biosynthesis II
Msil_3010	PWY-5103	L-isoleucine biosynthesis III
Msil_3010	PWY-5104	L-isoleucine biosynthesis IV
Msil_3010	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Msil_3010	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Msil_3010	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Msil_3010	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_3011	PWY-5101	L-isoleucine biosynthesis II
Msil_3011	PWY-5103	L-isoleucine biosynthesis III
Msil_3011	PWY-5104	L-isoleucine biosynthesis IV
Msil_3011	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_3018	PWY-6910	hydroxymethylpyrimidine salvage
Msil_3018	PWY-7356	thiamin salvage IV (yeast)
Msil_3018	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Msil_3024	PWY-5194	siroheme biosynthesis
Msil_3024	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Msil_3028	PWY-5530	sorbitol biosynthesis II
Msil_3028	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_3030	PWY-6123	inosine-5'-phosphate biosynthesis I
Msil_3030	PWY-6124	inosine-5'-phosphate biosynthesis II
Msil_3030	PWY-7234	inosine-5'-phosphate biosynthesis III
Msil_3035	PWY-5129	sphingolipid biosynthesis (plants)
Msil_3157	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_3176	PWY-6655	xanthan biosynthesis
Msil_3176	PWY-6658	acetan biosynthesis
Msil_3180	PWY-5506	methanol oxidation to formaldehyde IV
Msil_3187	PWY-5796	malonate decarboxylase activation
Msil_3188	PWY-5796	malonate decarboxylase activation
Msil_3189	PWY-6060	malonate degradation II (biotin-dependent)
Msil_3190	PWY-4381	fatty acid biosynthesis initiation I
Msil_3190	PWY-5743	3-hydroxypropanoate cycle
Msil_3190	PWY-5744	glyoxylate assimilation
Msil_3190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_3190	PWY-6060	malonate degradation II (biotin-dependent)
Msil_3190	PWY-6679	jadomycin biosynthesis
Msil_3190	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_3192	PWY-5794	malonate degradation I (biotin-independent)
Msil_3192	PWY-6060	malonate degradation II (biotin-dependent)
Msil_3216	PWY-6785	hydrogen production VIII
Msil_3224	PWY-2781	<i>cis</i>-zeatin biosynthesis
Msil_3225	PWY-7560	methylerythritol phosphate pathway II
Msil_3231	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Msil_3234	PWY-5101	L-isoleucine biosynthesis II
Msil_3234	PWY-5103	L-isoleucine biosynthesis III
Msil_3234	PWY-5104	L-isoleucine biosynthesis IV
Msil_3234	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Msil_3239	PWY-5152	leucodelphinidin biosynthesis
Msil_3243	PWY-6098	diploterol and cycloartenol biosynthesis
Msil_3243	PWY-7072	hopanoid biosynthesis (bacteria)
Msil_3256	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3256	PWY-4521	arsenite oxidation I (respiratory)
Msil_3256	PWY-6692	Fe(II) oxidation
Msil_3256	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3260	PWY-5194	siroheme biosynthesis
Msil_3260	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Msil_3262	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Msil_3265	PWY-5194	siroheme biosynthesis
Msil_3265	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Msil_3267	PWY-6683	sulfate reduction III (assimilatory)
Msil_3271	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_3271	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Msil_3271	PWY-6268	adenosylcobalamin salvage from cobalamin
Msil_3271	PWY-6269	adenosylcobalamin salvage from cobinamide II
Msil_3274	PWY-5443	aminopropanol phosphate biosynthesis I
Msil_3275	PWY-5381	pyridine nucleotide cycling (plants)
Msil_3275	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Msil_3277	PWY-4041	&gamma;-glutamyl cycle
Msil_3330	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Msil_3353	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Msil_3353	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Msil_3363	PWY-5839	menaquinol-7 biosynthesis
Msil_3363	PWY-5844	menaquinol-9 biosynthesis
Msil_3363	PWY-5849	menaquinol-6 biosynthesis
Msil_3363	PWY-5890	menaquinol-10 biosynthesis
Msil_3363	PWY-5891	menaquinol-11 biosynthesis
Msil_3363	PWY-5892	menaquinol-12 biosynthesis
Msil_3363	PWY-5895	menaquinol-13 biosynthesis
Msil_3372	PWY-4261	glycerol degradation I
Msil_3372	PWY-6118	glycerol-3-phosphate shuttle
Msil_3372	PWY-6952	glycerophosphodiester degradation
Msil_3378	PWY-2661	trehalose biosynthesis V
Msil_3380	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3380	PWY-4521	arsenite oxidation I (respiratory)
Msil_3380	PWY-6692	Fe(II) oxidation
Msil_3380	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3400	PWY-6832	2-aminoethylphosphonate degradation II
Msil_3402	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3402	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3403	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Msil_3410	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Msil_3433	PWY-4381	fatty acid biosynthesis initiation I
Msil_3433	PWY-5743	3-hydroxypropanoate cycle
Msil_3433	PWY-5744	glyoxylate assimilation
Msil_3433	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_3433	PWY-6679	jadomycin biosynthesis
Msil_3433	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_3442	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Msil_3442	PWY-6549	L-glutamine biosynthesis III
Msil_3442	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Msil_3442	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Msil_3459	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Msil_3459	PWY-581	indole-3-acetate biosynthesis II
Msil_3459	PWY-7308	acrylonitrile degradation I
Msil_3460	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Msil_3460	PWY-581	indole-3-acetate biosynthesis II
Msil_3460	PWY-7308	acrylonitrile degradation I
Msil_3461	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Msil_3461	PWY-581	indole-3-acetate biosynthesis II
Msil_3461	PWY-7308	acrylonitrile degradation I
Msil_3481	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3481	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3482	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Msil_3482	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Msil_3482	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Msil_3483	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3483	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3487	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Msil_3487	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Msil_3487	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Msil_3487	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Msil_3488	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3488	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3489	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3489	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3492	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Msil_3492	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Msil_3510	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Msil_3514	PWY-2941	L-lysine biosynthesis II
Msil_3514	PWY-2942	L-lysine biosynthesis III
Msil_3514	PWY-5097	L-lysine biosynthesis VI
Msil_3514	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Msil_3514	PWY-6559	spermidine biosynthesis II
Msil_3514	PWY-6562	norspermidine biosynthesis
Msil_3514	PWY-7153	grixazone biosynthesis
Msil_3514	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Msil_3530	PWY-5913	TCA cycle VI (obligate autotrophs)
Msil_3530	PWY-6549	L-glutamine biosynthesis III
Msil_3530	PWY-6728	methylaspartate cycle
Msil_3530	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_3530	PWY-7124	ethylene biosynthesis V (engineered)
Msil_3530	PWY-7254	TCA cycle VII (acetate-producers)
Msil_3530	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Msil_3537	PWY-6655	xanthan biosynthesis
Msil_3537	PWY-6658	acetan biosynthesis
Msil_3544	PWY-2201	folate transformations I
Msil_3544	PWY-3841	folate transformations II
Msil_3545	PWY-2201	folate transformations I
Msil_3545	PWY-3841	folate transformations II
Msil_3550	PWY-101	photosynthesis light reactions
Msil_3550	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Msil_3554	PWY-6700	queuosine biosynthesis
Msil_3555	PWY-6700	queuosine biosynthesis
Msil_3562	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3562	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Msil_3562	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_3562	PWY-5690	TCA cycle II (plants and fungi)
Msil_3562	PWY-6728	methylaspartate cycle
Msil_3562	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_3562	PWY-7254	TCA cycle VII (acetate-producers)
Msil_3562	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3563	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3563	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Msil_3563	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Msil_3563	PWY-5690	TCA cycle II (plants and fungi)
Msil_3563	PWY-6728	methylaspartate cycle
Msil_3563	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Msil_3563	PWY-7254	TCA cycle VII (acetate-producers)
Msil_3563	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3597	PWY-5506	methanol oxidation to formaldehyde IV
Msil_3618	PWY-6936	seleno-amino acid biosynthesis
Msil_3618	PWY-7274	D-cycloserine biosynthesis
Msil_3619	PWY-6871	3-methylbutanol biosynthesis
Msil_3620	PWY-6823	molybdenum cofactor biosynthesis
Msil_3620	PWY-6891	thiazole biosynthesis II (Bacillus)
Msil_3620	PWY-6892	thiazole biosynthesis I (E. coli)
Msil_3620	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Msil_3646	PWY-6823	molybdenum cofactor biosynthesis
Msil_3656	PWY-1881	formate oxidation to CO<sub>2</sub>
Msil_3656	PWY-5497	purine nucleobases degradation II (anaerobic)
Msil_3656	PWY-6696	oxalate degradation III
Msil_3659	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3659	PWY-4521	arsenite oxidation I (respiratory)
Msil_3659	PWY-6692	Fe(II) oxidation
Msil_3659	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3660	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3660	PWY-4521	arsenite oxidation I (respiratory)
Msil_3660	PWY-6692	Fe(II) oxidation
Msil_3660	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3696	PWY-3821	galactose degradation III
Msil_3696	PWY-6317	galactose degradation I (Leloir pathway)
Msil_3696	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Msil_3696	PWY-6527	stachyose degradation
Msil_3696	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Msil_3696	PWY-7344	UDP-D-galactose biosynthesis
Msil_3697	PWY-3801	sucrose degradation II (sucrose synthase)
Msil_3697	PWY-6527	stachyose degradation
Msil_3697	PWY-6981	chitin biosynthesis
Msil_3697	PWY-7238	sucrose biosynthesis II
Msil_3697	PWY-7343	UDP-glucose biosynthesis
Msil_3702	PWY-1042	glycolysis IV (plant cytosol)
Msil_3702	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Msil_3702	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_3702	PWY-5723	Rubisco shunt
Msil_3702	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Msil_3702	PWY-6886	1-butanol autotrophic biosynthesis
Msil_3702	PWY-6901	superpathway of glucose and xylose degradation
Msil_3702	PWY-7003	glycerol degradation to butanol
Msil_3702	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Msil_3702	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Msil_3711	PWY-2301	<i>myo</i>-inositol biosynthesis
Msil_3711	PWY-4702	phytate degradation I
Msil_3711	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Msil_3728	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Msil_3728	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Msil_3728	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Msil_3739	PWY-5663	tetrahydrobiopterin biosynthesis I
Msil_3739	PWY-5664	tetrahydrobiopterin biosynthesis II
Msil_3739	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Msil_3739	PWY-6703	preQ<sub>0</sub> biosynthesis
Msil_3739	PWY-6983	tetrahydrobiopterin biosynthesis III
Msil_3739	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Msil_3770	PWY-5194	siroheme biosynthesis
Msil_3770	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Msil_3774	PWY-6683	sulfate reduction III (assimilatory)
Msil_3784	PWY-5743	3-hydroxypropanoate cycle
Msil_3784	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_3784	PWY-6728	methylaspartate cycle
Msil_3784	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_3785	PWY-5743	3-hydroxypropanoate cycle
Msil_3785	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_3785	PWY-6728	methylaspartate cycle
Msil_3785	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Msil_3787	PWY-4381	fatty acid biosynthesis initiation I
Msil_3787	PWY-5743	3-hydroxypropanoate cycle
Msil_3787	PWY-5744	glyoxylate assimilation
Msil_3787	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Msil_3787	PWY-6679	jadomycin biosynthesis
Msil_3787	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_3798	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Msil_3801	PWY-3781	aerobic respiration I (cytochrome c)
Msil_3801	PWY-6692	Fe(II) oxidation
Msil_3801	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Msil_3801	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Msil_3804	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Msil_3804	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Msil_3806	PWY-6012	acyl carrier protein metabolism I
Msil_3806	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Msil_3807	PWY-5686	UMP biosynthesis
Msil_3809	PWY-1622	formaldehyde assimilation I (serine pathway)
Msil_3809	PWY-5484	glycolysis II (from fructose 6-phosphate)
Msil_3813	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Msil_3813	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Msil_3813	PWY-6268	adenosylcobalamin salvage from cobalamin
Msil_3813	PWY-6269	adenosylcobalamin salvage from cobinamide II
Msil_3816	PWY-2941	L-lysine biosynthesis II
Msil_3816	PWY-2942	L-lysine biosynthesis III
Msil_3816	PWY-5097	L-lysine biosynthesis VI
Msil_3835	PWY-7560	methylerythritol phosphate pathway II
Msil_3839	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Msil_3839	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Msil_3839	PWY-5989	stearate biosynthesis II (bacteria and plants)
Msil_3839	PWY-5994	palmitate biosynthesis I (animals and fungi)
Msil_3839	PWY-6113	superpathway of mycolate biosynthesis
Msil_3839	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Msil_3839	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Msil_3839	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Msil_3839	PWYG-321	mycolate biosynthesis
Msil_3848	PWY-5686	UMP biosynthesis
Msil_3849	PWY-5686	UMP biosynthesis
Msil_3860	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Msil_3860	PWY-6416	quinate degradation II
Msil_3860	PWY-6707	gallate biosynthesis
Msil_3897	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Msil_3897	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Msil_3897	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Msil_3897	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Msil_3912	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Msil_3921	PWY-2622	trehalose biosynthesis IV
