CM3_00005	SSF55979	DNA clamp
CM3_00010	SSF46565	Chaperone J-domain
CM3_00015	SSF54211	Ribosomal protein S5 domain 2-like
CM3_00015	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CM3_00015	SSF56719	Type II DNA topoisomerase
CM3_00020	SSF101904	GyrA/ParC C-terminal domain-like
CM3_00020	SSF56719	Type II DNA topoisomerase
CM3_00025	SSF46589	tRNA-binding arm
CM3_00025	SSF55681	Class II aaRS and biotin synthetases
CM3_00030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00050	SSF51556	Metallo-dependent hydrolases
CM3_00075	SSF56059	Glutathione synthetase ATP-binding domain-like
CM3_00080	SSF51735	NAD(P)-binding Rossmann-fold domains
CM3_00080	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
CM3_00085	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00085	SSF90123	ABC transporter transmembrane region
CM3_00090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00090	SSF90123	ABC transporter transmembrane region
CM3_00095	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00100	SSF46565	Chaperone J-domain
CM3_00100	SSF49493	HSP40/DnaJ peptide-binding domain
CM3_00100	SSF57938	DnaJ/Hsp40 cysteine-rich domain
CM3_00105	SSF53474	alpha/beta-Hydrolases
CM3_00110	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_00110	SSF52374	Nucleotidylyl transferase
CM3_00120	SSF51569	Aldolase
CM3_00125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00125	SSF81271	TGS-like
CM3_00140	SSF50104	Translation proteins SH3-like domain
CM3_00140	SSF50249	Nucleic acid-binding proteins
CM3_00145	SSF48013	NusB-like
CM3_00155	SSF52317	Class I glutamine amidotransferase-like
CM3_00160	SSF53271	PRTase-like
CM3_00165	SSF160975	AF1531-like
CM3_00165	SSF53098	Ribonuclease H-like
CM3_00185	SSF81338	Aquaporin-like
CM3_00190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00190	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CM3_00195	SSF52954	Class II aaRS ABD-related
CM3_00195	SSF55681	Class II aaRS and biotin synthetases
CM3_00200	SSF50249	Nucleic acid-binding proteins
CM3_00200	SSF55261	GAD domain-like
CM3_00200	SSF55681	Class II aaRS and biotin synthetases
CM3_00215	SSF53067	Actin-like ATPase domain
CM3_00220	SSF51905	FAD/NAD(P)-binding domain
CM3_00230	SSF55594	HPr-like
CM3_00235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00255	SSF161098	MetI-like
CM3_00260	SSF53850	Periplasmic binding protein-like II
CM3_00265	SSF53067	Actin-like ATPase domain
CM3_00270	SSF55973	S-adenosylmethionine synthetase
CM3_00275	SSF47446	Signal peptide-binding domain
CM3_00275	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00280	SSF53167	Purine and uridine phosphorylases
CM3_00285	SSF51569	Aldolase
CM3_00290	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
CM3_00290	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
CM3_00290	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
CM3_00295	SSF53927	Cytidine deaminase-like
CM3_00300	SSF53738	Phosphoglucomutase, first 3 domains
CM3_00300	SSF55957	Phosphoglucomutase, C-terminal domain
CM3_00305	SSF82679	N-utilization substance G protein NusG, N-terminal domain
CM3_00315	SSF57829	Zn-binding ribosomal proteins
CM3_00325	SSF53790	Tetrapyrrole methylase
CM3_00330	SSF110455	Toprim domain
CM3_00335	SSF53271	PRTase-like
CM3_00340	SSF74982	Small protein B (SmpB)
CM3_00345	SSF53448	Nucleotide-diphospho-sugar transferases
CM3_00350	SSF103473	MFS general substrate transporter
CM3_00365	SSF53613	Ribokinase-like
CM3_00380	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00385	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CM3_00385	SSF52922	TK C-terminal domain-like
CM3_00390	SSF50494	Trypsin-like serine proteases
CM3_00395	SSF50494	Trypsin-like serine proteases
CM3_00430	SSF51261	Duplicated hybrid motif
CM3_00430	SSF55604	Glucose permease domain IIB
CM3_00435	SSF52313	Ribosomal protein S2
CM3_00460	SSF46600	C-terminal UvrC-binding domain of UvrB
CM3_00460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00485	SSF161098	MetI-like
CM3_00490	SSF161098	MetI-like
CM3_00495	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00500	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00505	SSF46906	Ribosomal protein L11, C-terminal domain
CM3_00505	SSF54747	Ribosomal L11/L12e N-terminal domain
CM3_00520	SSF56808	Ribosomal protein L1
CM3_00525	SSF53178	Peptidyl-tRNA hydrolase-like
CM3_00530	SSF52402	Adenine nucleotide alpha hydrolases-like
CM3_00560	SSF47973	Ribosomal protein S7
CM3_00575	SSF54995	Ribosomal protein S6
CM3_00580	SSF50249	Nucleic acid-binding proteins
CM3_00585	SSF46911	Ribosomal protein S18
CM3_00590	SSF55653	Ribosomal protein L9 C-domain
CM3_00590	SSF55658	L9 N-domain-like
CM3_00595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00610	SSF52141	Uracil-DNA glycosylase-like
CM3_00615	SSF141000	Glu-tRNAGln amidotransferase C subunit
CM3_00620	SSF75304	Amidase signature (AS) enzymes
CM3_00625	SSF55931	Glutamine synthetase/guanido kinase
CM3_00625	SSF89095	GatB/YqeY motif
CM3_00630	SSF46785	"Winged helix" DNA-binding domain
CM3_00635	SSF51905	FAD/NAD(P)-binding domain
CM3_00640	SSF55608	Homing endonucleases
CM3_00650	SSF50249	Nucleic acid-binding proteins
CM3_00655	SSF143597	YojJ-like
CM3_00660	SSF56420	Peptide deformylase
CM3_00665	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00670	SSF81606	PP2C-like
CM3_00675	SSF56112	Protein kinase-like (PK-like)
CM3_00680	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00685	SSF53697	SIS domain
CM3_00690	SSF51366	Ribulose-phoshate binding barrel
CM3_00695	SSF50249	Nucleic acid-binding proteins
CM3_00695	SSF55681	Class II aaRS and biotin synthetases
CM3_00705	SSF142433	CinA-like
CM3_00720	SSF51735	NAD(P)-binding Rossmann-fold domains
CM3_00725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00755	SSF52833	Thioredoxin-like
CM3_00760	SSF56784	HAD-like
CM3_00765	SSF52374	Nucleotidylyl transferase
CM3_00770	SSF52833	Thioredoxin-like
CM3_00775	SSF111331	NAD kinase/diacylglycerol kinase-like
CM3_00780	SSF55604	Glucose permease domain IIB
CM3_00785	SSF109604	HD-domain/PDEase-like
CM3_00800	SSF54197	HIT-like
CM3_00810	SSF82607	YbaB-like
CM3_00820	SSF50249	Nucleic acid-binding proteins
CM3_00820	SSF55681	Class II aaRS and biotin synthetases
CM3_00825	SSF51905	FAD/NAD(P)-binding domain
CM3_00830	SSF50447	Translation proteins
CM3_00830	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00830	SSF54980	EF-G C-terminal domain-like
CM3_00835	SSF56281	Metallo-hydrolase/oxidoreductase
CM3_00880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00885	SSF50249	Nucleic acid-binding proteins
CM3_00885	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CM3_00885	SSF69705	Transcription factor NusA, N-terminal domain
CM3_00890	SSF64376	YlxR-like
CM3_00895	SSF50447	Translation proteins
CM3_00895	SSF52156	Initiation factor IF2/eIF5b, domain 3
CM3_00895	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_00900	SSF89919	Ribosome-binding factor A, RbfA
CM3_00910	SSF52374	Nucleotidylyl transferase
CM3_00910	SSF82114	Riboflavin kinase-like
CM3_00915	SSF54631	CBS-domain pair
CM3_00950	SSF54999	Ribosomal protein S10
CM3_00955	SSF50447	Translation proteins
CM3_00960	SSF52166	Ribosomal protein L4
CM3_00965	SSF54189	Ribosomal proteins S24e, L23 and L15e
CM3_00970	SSF50104	Translation proteins SH3-like domain
CM3_00970	SSF50249	Nucleic acid-binding proteins
CM3_00975	SSF54570	Ribosomal protein S19
CM3_00980	SSF54843	Ribosomal protein L22
CM3_00985	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CM3_00985	SSF54821	Ribosomal protein S3 C-terminal domain
CM3_00990	SSF54686	Ribosomal protein L16p/L10e
CM3_00995	SSF46561	Ribosomal protein L29 (L29p)
CM3_01000	SSF50249	Nucleic acid-binding proteins
CM3_01005	SSF50193	Ribosomal protein L14
CM3_01010	SSF50104	Translation proteins SH3-like domain
CM3_01015	SSF55282	RL5-like
CM3_01020	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CM3_01025	SSF56047	Ribosomal protein S8
CM3_01030	SSF56053	Ribosomal protein L6
CM3_01035	SSF53137	Translational machinery components
CM3_01040	SSF54211	Ribosomal protein S5 domain 2-like
CM3_01040	SSF54768	dsRNA-binding domain-like
CM3_01045	SSF52080	Ribosomal proteins L15p and L18e
CM3_01060	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01060	SSF57774	Microbial and mitochondrial ADK, insert "zinc finger" domain
CM3_01065	SSF55920	Creatinase/aminopeptidase
CM3_01070	SSF50249	Nucleic acid-binding proteins
CM3_01075	SSF57840	Ribosomal protein L36
CM3_01080	SSF46946	S13-like H2TH domain
CM3_01085	SSF53137	Translational machinery components
CM3_01090	SSF47789	C-terminal domain of RNA polymerase alpha subunit
CM3_01090	SSF55257	RBP11-like subunits of RNA polymerase
CM3_01090	SSF56553	Insert subdomain of RNA polymerase alpha subunit
CM3_01095	SSF64263	Prokaryotic ribosomal protein L17
CM3_01100	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01105	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01115	SSF55120	Pseudouridine synthase
CM3_01120	SSF55486	Metalloproteases ("zincins"), catalytic domain
CM3_01155	SSF50199	Staphylococcal nuclease
CM3_01160	SSF50331	MOP-like
CM3_01160	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01165	SSF161098	MetI-like
CM3_01170	SSF161098	MetI-like
CM3_01175	SSF64182	DHH phosphoesterases
CM3_01225	SSF55681	Class II aaRS and biotin synthetases
CM3_01230	SSF46955	Putative DNA-binding domain
CM3_01230	SSF50249	Nucleic acid-binding proteins
CM3_01230	SSF55681	Class II aaRS and biotin synthetases
CM3_01230	SSF56037	PheT/TilS domain
CM3_01235	SSF54364	Translation initiation factor IF3, N-terminal domain
CM3_01235	SSF55200	Translation initiation factor IF3, C-terminal domain
CM3_01240	SSF143034	L35p-like
CM3_01245	SSF74731	Ribosomal protein L20
CM3_01275	SSF51064	Head domain of nucleotide exchange factor GrpE
CM3_01275	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
CM3_01285	SSF54211	Ribosomal protein S5 domain 2-like
CM3_01285	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
CM3_01285	SSF56719	Type II DNA topoisomerase
CM3_01290	SSF101904	GyrA/ParC C-terminal domain-like
CM3_01290	SSF56719	Type II DNA topoisomerase
CM3_01295	SSF46785	"Winged helix" DNA-binding domain
CM3_01295	SSF55781	GAF domain-like
CM3_01300	SSF47781	RuvA domain 2-like
CM3_01300	SSF82771	GIY-YIG endonuclease
CM3_01305	SSF56300	Metallo-dependent phosphatases
CM3_01310	SSF53067	Actin-like ATPase domain
CM3_01315	SSF55120	Pseudouridine synthase
CM3_01315	SSF55174	Alpha-L RNA-binding motif
CM3_01335	SSF103657	BAR/IMD domain-like
CM3_01340	SSF56214	4'-phosphopantetheinyl transferase
CM3_01345	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
CM3_01355	SSF46785	"Winged helix" DNA-binding domain
CM3_01360	SSF53784	Phosphofructokinase
CM3_01365	SSF50800	PK beta-barrel domain-like
CM3_01365	SSF51621	Phosphoenolpyruvate/pyruvate domain
CM3_01365	SSF52935	PK C-terminal domain-like
CM3_01400	SSF89447	AbrB/MazE/MraZ-like
CM3_01405	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CM3_01405	SSF81799	Putative methyltransferase TM0872, insert domain
CM3_01415	SSF52490	Tubulin nucleotide-binding domain-like
CM3_01445	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
CM3_01450	SSF53597	Dihydrofolate reductase-like
CM3_01455	SSF47240	Ferritin-like
CM3_01460	SSF52218	Flavoproteins
CM3_01465	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
CM3_01465	SSF51998	PFL-like glycyl radical enzymes
CM3_01470	SSF141091	L21p-like
CM3_01475	SSF118010	TM1457-like
CM3_01480	SSF110324	Ribosomal L27 protein-like
CM3_01485	SSF51658	Xylose isomerase-like
CM3_01490	SSF46785	"Winged helix" DNA-binding domain
CM3_01495	SSF116965	Hypothetical protein MPN330
CM3_01500	SSF102735	Trigger factor ribosome-binding domain
CM3_01500	SSF109998	Triger factor/SurA peptide-binding domain-like
CM3_01500	SSF54534	FKBP-like
CM3_01505	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01505	SSF54211	Ribosomal protein S5 domain 2-like
CM3_01505	SSF88697	PUA domain-like
CM3_01510	SSF109604	HD-domain/PDEase-like
CM3_01510	SSF52374	Nucleotidylyl transferase
CM3_01535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01540	SSF100950	NagB/RpiA/CoA transferase-like
CM3_01545	SSF56300	Metallo-dependent phosphatases
CM3_01565	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CM3_01565	SSF88946	Sigma2 domain of RNA polymerase sigma factors
CM3_01570	SSF56731	DNA primase core
CM3_01570	SSF57783	Zinc beta-ribbon
CM3_01575	SSF52954	Class II aaRS ABD-related
CM3_01575	SSF55681	Class II aaRS and biotin synthetases
CM3_01580	SSF75217	alpha/beta knot
CM3_01585	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_01585	SSF52374	Nucleotidylyl transferase
CM3_01590	SSF47781	RuvA domain 2-like
CM3_01590	SSF50249	Nucleic acid-binding proteins
CM3_01590	SSF52113	BRCT domain
CM3_01590	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
CM3_01605	SSF143800	L28p-like
CM3_01610	SSF75620	Release factor
CM3_01660	SSF89550	PHP domain-like
CM3_01665	SSF47807	5' to 3' exonuclease, C-terminal subdomain
CM3_01665	SSF88723	PIN domain-like
CM3_01670	SSF46946	S13-like H2TH domain
CM3_01670	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
CM3_01670	SSF81624	N-terminal domain of MutM-like DNA repair proteins
CM3_01675	SSF56784	HAD-like
CM3_01680	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01685	SSF56784	HAD-like
CM3_01690	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_01690	SSF50677	ValRS/IleRS/LeuRS editing domain
CM3_01690	SSF52374	Nucleotidylyl transferase
CM3_01700	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01715	SSF55681	Class II aaRS and biotin synthetases
CM3_01715	SSF82649	SufE/NifU
CM3_01730	SSF51230	Single hybrid motif
CM3_01730	SSF52777	CoA-dependent acyltransferases
CM3_01735	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CM3_01735	SSF52922	TK C-terminal domain-like
CM3_01740	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
CM3_01745	SSF51905	FAD/NAD(P)-binding domain
CM3_01745	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
CM3_01750	SSF53271	PRTase-like
CM3_01755	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
CM3_01760	SSF109604	HD-domain/PDEase-like
CM3_01760	SSF81301	Nucleotidyltransferase
CM3_01780	SSF46557	GreA transcript cleavage protein, N-terminal domain
CM3_01780	SSF54534	FKBP-like
CM3_01785	SSF52954	Class II aaRS ABD-related
CM3_01785	SSF55681	Class II aaRS and biotin synthetases
CM3_01785	SSF64586	C-terminal domain of ProRS
CM3_01805	SSF47336	ACP-like
CM3_01845	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01850	SSF161098	MetI-like
CM3_01855	SSF53098	Ribonuclease H-like
CM3_01860	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
CM3_01860	SSF50447	Translation proteins
CM3_01860	SSF55186	ThrRS/AlaRS common domain
CM3_01860	SSF55681	Class II aaRS and biotin synthetases
CM3_01865	SSF51695	PLC-like phosphodiesterases
CM3_01870	SSF103473	MFS general substrate transporter
CM3_01885	SSF158715	MG296-like
CM3_01890	SSF47364	Domain of the SRP/SRP receptor G-proteins
CM3_01890	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01895	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01895	SSF75553	Smc hinge domain
CM3_01900	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CM3_01905	SSF53748	Phosphoglycerate kinase
CM3_01910	SSF51735	NAD(P)-binding Rossmann-fold domains
CM3_01910	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
CM3_01920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01930	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
CM3_01930	SSF53067	Actin-like ATPase domain
CM3_01950	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_01960	SSF53474	alpha/beta-Hydrolases
CM3_01965	SSF55174	Alpha-L RNA-binding motif
CM3_01995	SSF48019	post-AAA+ oligomerization domain-like
CM3_02025	SSF53850	Periplasmic binding protein-like II
CM3_02035	SSF116726	TrkA C-terminal domain-like
CM3_02035	SSF51735	NAD(P)-binding Rossmann-fold domains
CM3_02045	SSF53092	Creatinase/prolidase N-terminal domain
CM3_02045	SSF55920	Creatinase/aminopeptidase
CM3_02050	SSF57829	Zn-binding ribosomal proteins
CM3_02055	SSF82549	DAK1/DegV-like
CM3_02060	SSF53474	alpha/beta-Hydrolases
CM3_02070	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02075	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02085	SSF75625	YebC-like
CM3_02090	SSF52218	Flavoproteins
CM3_02095	SSF46589	tRNA-binding arm
CM3_02095	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_02095	SSF50677	ValRS/IleRS/LeuRS editing domain
CM3_02095	SSF52374	Nucleotidylyl transferase
CM3_02100	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02110	SSF53448	Nucleotide-diphospho-sugar transferases
CM3_02115	SSF53383	PLP-dependent transferases
CM3_02120	SSF82649	SufE/NifU
CM3_02135	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02135	SSF54752	RecA protein, C-terminal domain
CM3_02155	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
CM3_02160	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
CM3_02165	SSF52218	Flavoproteins
CM3_02175	SSF53474	alpha/beta-Hydrolases
CM3_02180	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_02180	SSF50677	ValRS/IleRS/LeuRS editing domain
CM3_02180	SSF52374	Nucleotidylyl transferase
CM3_02185	SSF75217	alpha/beta knot
CM3_02190	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CM3_02215	SSF50324	Inorganic pyrophosphatase
CM3_02220	SSF52980	Restriction endonuclease-like
CM3_02225	SSF47729	IHF-like DNA-binding proteins
CM3_02230	SSF110009	Hypothetical protein MG354
CM3_02245	SSF56112	Protein kinase-like (PK-like)
CM3_02270	SSF47781	RuvA domain 2-like
CM3_02275	SSF46785	"Winged helix" DNA-binding domain
CM3_02275	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02280	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
CM3_02280	SSF56672	DNA/RNA polymerases
CM3_02285	SSF160369	Ribosomal protein L10-like
CM3_02290	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
CM3_02290	SSF54736	ClpS-like
CM3_02295	SSF57829	Zn-binding ribosomal proteins
CM3_02300	SSF46992	Ribosomal protein S20
CM3_02310	SSF50486	FMT C-terminal domain-like
CM3_02310	SSF53328	Formyltransferase
CM3_02325	SSF69065	RNase III domain-like
CM3_02330	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
CM3_02335	SSF101473	DhaL-like
CM3_02340	SSF55120	Pseudouridine synthase
CM3_02345	SSF64182	DHH phosphoesterases
CM3_02350	SSF143437	THUMP domain-like
CM3_02350	SSF52402	Adenine nucleotide alpha hydrolases-like
CM3_02355	SSF52980	Restriction endonuclease-like
CM3_02360	SSF56784	HAD-like
CM3_02365	SSF52954	Class II aaRS ABD-related
CM3_02365	SSF55186	ThrRS/AlaRS common domain
CM3_02365	SSF55681	Class II aaRS and biotin synthetases
CM3_02375	SSF109998	Triger factor/SurA peptide-binding domain-like
CM3_02380	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
CM3_02380	SSF52374	Nucleotidylyl transferase
CM3_02395	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CM3_02415	SSF52402	Adenine nucleotide alpha hydrolases-like
CM3_02420	SSF102741	Obg GTP-binding protein C-terminal domain
CM3_02420	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02420	SSF82051	Obg GTP-binding protein N-terminal domain
CM3_02435	SSF51695	PLC-like phosphodiesterases
CM3_02445	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02445	SSF54814	Prokaryotic type KH domain (KH-domain type II)
CM3_02450	SSF55486	Metalloproteases ("zincins"), catalytic domain
CM3_02460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02460	SSF90123	ABC transporter transmembrane region
CM3_02465	SSF53187	Zn-dependent exopeptidases
CM3_02470	SSF48592	GroEL equatorial domain-like
CM3_02470	SSF52029	GroEL apical domain-like
CM3_02470	SSF54849	GroEL-intermediate domain like
CM3_02475	SSF50129	GroES-like
CM3_02480	SSF53383	PLP-dependent transferases
CM3_02485	SSF50494	Trypsin-like serine proteases
CM3_02495	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
CM3_02505	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
CM3_02510	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
CM3_02510	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
CM3_02510	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02530	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
CM3_02530	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
CM3_02530	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02535	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
CM3_02540	SSF81573	F1F0 ATP synthase subunit B, membrane domain
CM3_02545	SSF81333	F1F0 ATP synthase subunit C
CM3_02550	SSF81336	F1F0 ATP synthase subunit A
CM3_02560	SSF51604	Enolase C-terminal domain-like
CM3_02560	SSF54826	Enolase N-terminal domain-like
CM3_02565	SSF55068	Peptide methionine sulfoxide reductase
CM3_02570	SSF109755	PhoU-like
CM3_02575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02580	SSF161098	MetI-like
CM3_02585	SSF53850	Periplasmic binding protein-like II
CM3_02600	SSF54211	Ribosomal protein S5 domain 2-like
CM3_02605	SSF52161	Ribosomal protein L13
CM3_02610	SSF48019	post-AAA+ oligomerization domain-like
CM3_02610	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02615	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02625	SSF56281	Metallo-hydrolase/oxidoreductase
CM3_02630	SSF47060	S15/NS1 RNA-binding domain
CM3_02640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02645	SSF143800	L28p-like
CM3_02650	SSF82784	OsmC-like
CM3_02655	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
CM3_02660	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
CM3_02660	SSF51621	Phosphoenolpyruvate/pyruvate domain
CM3_02660	SSF52009	Phosphohistidine domain
CM3_02665	SSF53649	Alkaline phosphatase-like
CM3_02665	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
CM3_02670	SSF51351	Triosephosphate isomerase (TIM)
CM3_02680	SSF46934	UBA-like
CM3_02680	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
CM3_02685	SSF53633	Carbamate kinase-like
CM3_02690	SSF55194	Ribosome recycling factor, RRF
CM3_02700	SSF116734	DNA methylase specificity domain
CM3_02720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02730	SSF50104	Translation proteins SH3-like domain
CM3_02735	SSF75217	alpha/beta knot
CM3_02740	SSF54565	Ribosomal protein S16
CM3_02755	SSF51316	Mss4-like
CM3_02770	SSF82549	DAK1/DegV-like
CM3_02775	SSF50447	Translation proteins
CM3_02775	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
CM3_02775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02785	SSF53448	Nucleotide-diphospho-sugar transferases
CM3_02790	SSF82784	OsmC-like
CM3_02815	SSF140990	FtsH protease domain-like
CM3_02815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02825	SSF53271	PRTase-like
CM3_02830	SSF69765	IpsF-like
CM3_02835	SSF51735	NAD(P)-binding Rossmann-fold domains
CM3_02835	SSF56327	LDH C-terminal domain-like
CM3_02840	SSF109604	HD-domain/PDEase-like
CM3_02845	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
CM3_02845	SSF52374	Nucleotidylyl transferase
CM3_02850	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
CM3_02860	SSF54211	Ribosomal protein S5 domain 2-like
CM3_02870	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02885	SSF48295	TrpR-like
CM3_02885	SSF52540	P-loop containing nucleoside triphosphate hydrolases
CM3_02895	SSF52540	P-loop containing nucleoside triphosphate hydrolases