PAJ_p0036	PWY-6167	flavin biosynthesis II (archaea)
PAJ_p0036	PWY-6168	flavin biosynthesis III (fungi)
PAJ_p0039	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PAJ_p0040	PWY-5101	L-isoleucine biosynthesis II
PAJ_p0040	PWY-5103	L-isoleucine biosynthesis III
PAJ_p0040	PWY-5104	L-isoleucine biosynthesis IV
PAJ_p0040	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PAJ_p0040	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PAJ_p0040	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PAJ_p0040	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PAJ_p0041	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PAJ_p0049	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PAJ_p0065	PWY-7310	D-glucosaminate degradation
PAJ_p0111	PWY-6891	thiazole biosynthesis II (Bacillus)
PAJ_p0111	PWY-6892	thiazole biosynthesis I (E. coli)
PAJ_p0171	PWY-5392	reductive TCA cycle II
PAJ_p0171	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PAJ_p0171	PWY-5690	TCA cycle II (plants and fungi)
PAJ_p0171	PWY-5913	TCA cycle VI (obligate autotrophs)
PAJ_p0171	PWY-6728	methylaspartate cycle
PAJ_p0171	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PAJ_p0171	PWY-7254	TCA cycle VII (acetate-producers)
PAJ_p0171	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PAJ_p0178	PWY-7254	TCA cycle VII (acetate-producers)
PAJ_p0182	PWY-6409	pyoverdine I biosynthesis
PAJ_p0182	PWY-6562	norspermidine biosynthesis
PAJ_p0182	PWY-761	rhizobactin 1021 biosynthesis
PAJ_p0185	PWY-6984	lipoate salvage II
PAJ_p0185	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PAJ_p0185	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
PAJ_p0209	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PAJ_p0209	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PAJ_p0210	PWY-5692	allantoin degradation to glyoxylate II
PAJ_p0210	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PAJ_p0218	PWY-5169	cyanurate degradation
PAJ_p0218	PWY-5703	urea degradation I
PAJ_p0240	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PAJ_p0267	PWY-5767	PAJ_p0267|cga|YP_005941232.1|GeneID:12531776
PAJ_p0269	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PAJ_p0279	PWY-3461	L-tyrosine biosynthesis II
PAJ_p0279	PWY-3462	L-phenylalanine biosynthesis II
PAJ_p0279	PWY-6120	L-tyrosine biosynthesis III
PAJ_p0279	PWY-6627	salinosporamide A biosynthesis