   PAJ_p0008    8737 ..    8752 +    -9  -3.72576   TCTTCTCCGCTTTTG              TCAGCC TGTC GGCTGA               TTTCATCAACCGACG  76 10
   PAJ_p0010    9690 ..    9721 + -12.3  -4.82901   TCACGGAGGCCCCCC      CGCGGCGGA-AGAC AATTG GACTGTCCGCCGCG      TTTTTATCCAGCCAG 100 155
        baeR NONE
        baeS   12453 ..   12476 +  -8.8  -4.74801   GACCGGCAAAAGTGA          AGCCTGCGCGC CCT GCGC-CAGGCA          TTTTTGCTGACCTTG  93 41
        acrA NONE
        acrD   16889 ..   16907 + -10.3  -4.82901   TCGGGCAATAAAAAA             GCGCTGT CGTAC ACAGCGC             TTTTTGTCGCCAGCA 100 139
   PAJ_p0017   19325 ..   19335 +  -4.6  -3.92659   CTGCTTTATAGCGTG                 CCCG GCA TGGG                 TTTCGGTTTTGGCCA  58 56
        lumQ NONE
   PAJ_p0020   22019 ..   22039 +  -8.3   -2.8805   TTTTCTTTTAACCGG            CCTGATCCT GAC AGGATTGGG            TATCTGGCAAATACT  62 322
         aes   23448 ..   23465 +  -9.1  -3.60074   AGATTAATGCGCAAC             GGCAGCGG CTA CCGC-GCC             TTTCGCCCCTTTATC  72 79
   PAJ_p0023   25997 ..   26007 +  -6.8  -3.62275   GCGACTGCAGCAGCA                 GGGT ATT ACCC                 TTTAGCCTGCTGCCT  63 189
        dhaT   32529 ..   32569 +  -9.9  -3.15249   CTGTGGCGGCACTAA  CGGTGAGTTTTTTGTTCTT AAT GAGAAAGAGAAACTCACTG  TTACTGAAACCTGTG  71 185
        putP NONE
   PAJ_p0030 NONE
        yjgK NONE
        fabG   37111 ..   37128 +  -8.4  -5.75945   GCATACAAACGTAAA             CCAGCC TTCACC GGCTGG              TTTTTTTTGCGCCAT 100 49
        metQ   38738 ..   38756 +  -8.8  -3.03124   AGGCTGGCTGAAACA             GGCCGC ATCGTCA GCGGCC             TGTTCCACGCTAGAA  67 61
        ribH   40406 ..   40422 +  -5.1  -3.53761   CCAATGCTCAAGTGC              CGCTG AGTCTGC CAGCG              TTTCAGGAGACCTTA  56 76
   PAJ_p0037   40958 ..   40968 +  -5.4  -2.78384   ATTGCCATCGTGCCT                 CATG TGT CATG                 TGTCATCAAAAGCAC  50 73
        budR   46085 ..   46098 +  -6.7   -4.7373   CGTAAACTGATGCAA               TGCTG TTCG CAGCA                TTTTTCATCCGCTCA  80 31
        gdhA   47895 ..   47919 + -18.7  -4.17089   GTTAATGACTGAAAA          CACAACCCGCA CCG TGCGGGTTGTG          TTTTAGCGGTTTACC 100 36
   PAJ_p0044   50780 ..   50802 +  -3.3  -3.78775   GCTTCAGGGGCGCTA           CCGCCTGAG GTTGA CTGAGGCAG           TTTACTGGTGCGAAG  54 436
         hns   56528 ..   56549 +    -8   -5.4505   ATCTGACATAATTAA           GCGGTGTT GATGAG GACACCGC            TTTTTTATTGGAAAC  95 35
   PAJ_p0056 NONE
         map   60399 ..   60420 + -15.9  -3.16191   GCTATCTGATACTTA           TGCCGCCTC AGAG GAGGCGGCA            TTGATGACGGTCTGG 100 32
   PAJ_p0060   62917 ..   62934 +  -9.8  -3.77014   AAATAATGCCTGCCC             GCCCGG CCTGGA CCGGGC              TTTCCGTGATTTTCT  79 35
        ybiU NONE
        yciT   66566 ..   66613 + -15.1  -4.07568   CGATAGCCATTTCAT CATTGCTGGCGA-CG-ATAGCAC TAAA GGGCTGTCCGCTCGCCAGCAATG TTTTCACCGCCAGCA 100 294
        ascF NONE
        ascB   70591 ..   70604 +  -8.1  -4.13767   GCAAAACGCCCTGAA               GCAGG CAGT CCTGC                TTTTCAGGTGACAGC  76 85
   PAJ_p0068   73905 ..   73924 +  -3.4  -4.84311   GGGCGTTCCTGATCA            GGTCCCGT TTGA GCGCGGCC             TTTTCTTCTGTAGGC  74 481
        yddU   79032 ..   79053 +  -5.1  -3.14344   GAGAATCATAACCGC           GTTTGCTGC GCCA GCGGCAAAA            TTCATAAGGAACATC  50 399
        foxA NONE
        yadT   88335 ..   88365 +    -9  -5.03314   AGCCAATCCGGCTAT       CGTCGTTAAGCGTG CCT TACGCTTAGCGCTG       TTTTTTACCGATCCC 100 213
   PAJ_p0088   97846 ..   97884 +  -3.2  -3.16564   ATGCTTATATTTTAC   GCATTGTGTTAACTTTTA AGC TTAATTTTGGCACAATGC   TTGATAACATCCGCC  45 45
        ycgZ   98426 ..   98448 +  -4.1  -2.52516   AGCTGTCCCCCGTCA           TCGTAGCCG GAGCG TGGCTACAA           ATTCGTAATCAGAGA  44 150
   PAJ_p0090   98826 ..   98836 +    -4  -2.79023   AGTGTGTTATGCCTG                 GTAA CCC TTAC                 TACTTAATGACCTTG  46 93
        ymgB   99558 ..   99568 +  -2.6  -5.26119   ATATTATTGATTTAG                 TTAT ACA ATAA                 TTTTATTTTTCCACG  75 428
   PAJ_p0094 NONE
        yjgF  101579 ..  101594 +  -3.2  -3.65426   TTGCTGATTGAGATC              GACGCA ATCC TGGGTC               TTTGAACATTTATAA  49 5
   PAJ_p0096  105880 ..  105891 +  -5.8  -4.84918   CAAAGGACCAGAGAG                CCAC CGCT GTGG                 TTTTATCTTTCTCAG  83 333
        yneI  112544 ..  112565 + -14.5  -4.37211   ACAACAACAATAAAA           CAGGCGCAT GACA ATGCGCCTG            TTTCTTATCACTTTC 100 62
        nikA NONE
        nikB NONE
        dppC NONE
        yejF  119267 ..  119293 +  -5.1  -3.71284   CCGGCGAGCAACTTC         AGCCAGCGT CAGGCCGGC ACGCTGGCG         TTCTCTTACTAAACC  58 525
        azlC NONE
   PAJ_p0108  120616 ..  120626 +  -6.8  -4.08945   AGGCAGATACTTGCC                 GCAG AGT CTGC                 TTTTGCCGGGCTCAT  71 220
        thiO NONE
   PAJ_p0110 NONE
        thiG NONE
        thiF  123677 ..  123700 +  -4.6   -4.8048   CCAGGCATAGTCGGG          TTTGTTTACC GGCT GGTAGCCAAA           TTTTTGATATAACCA  74 105
        yybH  125664 ..  125696 + -15.7   -2.7386   CACTGCGTGATTTAG      GCCGTTAATCCGGAT AGC GTGCGGATTAACGGC      TGATTCAGATGACTT  90 51
        yddH NONE
        yjgB  128692 ..  128712 + -15.4  -4.74103   CGACTTCTGATCCCT            GGCGCGCC TTTCT GGCGCGCC            TTTTTCCCTTCCCGC 100 31
        crtZ  129718 ..  129730 +  -3.3  -3.32844   AAGGTCACAGGCGCG                GTCCA GCG TGGCC                TTATCCCGTACGCCC  49 417
        yiaE  139717 ..  139753 +  -6.4  -2.72144   GCGATGCTCATTTCA    CCGGGAATGACGGC AATGATACC GCCGCCAACCCCGG    ATTTGGCGGGCATGC  50 305
   PAJ_p0133 NONE
        clcA  142639 ..  142649 +  -2.4  -4.57073   AATATGGCAACCCAC                 GACG CTC CGGC                 TTTTTAAACCACGTG  63 461
   PAJ_p0135 NONE
   PAJ_p0136 NONE
   PAJ_p0137 NONE
   PAJ_p0138  147643 ..  147653 +  -6.8  -2.87564   TGGTCTGTGGCGATC                 TGCC GCT GGCA                 TGTATGCAGCAGTCA  56 263
   PAJ_p0139 NONE
   PAJ_p0140  149628 ..  149653 + -11.1   -5.1675   TACCGCGTAAGCCCG         ATGCGGACGGG GTTT CCTGTCCGCAG          TTTTTTGCTGAGTGC 100 31
        clpV NONE
   PAJ_p0142  154794 ..  154808 +  -5.7   -4.1021   TAAATTCAGCTTTTC               CTGAC AAGGA GTCAG               TTTATGATTATCAGC  66 22
   PAJ_p0143 NONE
   PAJ_p0144  157776 ..  157789 +  -3.1  -2.78996   TTAATTGCCGCTGTA               TACGC CTTG GTGTA                ATTTCAATGGGGGTA  42 50
   PAJ_p0145 NONE
   PAJ_p0146  159001 ..  159013 +  -2.7  -3.79747   AACATTGAAATTGCT                TGAGA GTA TTTCA                TTTGATGGTGACTCG  52 137
   PAJ_p0147 NONE
   PAJ_p0148 NONE
   PAJ_p0149 NONE
   PAJ_p0150 NONE
   PAJ_p0151 NONE
   PAJ_p0152  167310 ..  167321 +  -2.2  -3.72049   GAGTGTTTTTTGTTT                GGTG ATAA CATC                 GTTTTTTCGTGGTTG  50 242
   PAJ_p0153  168075 ..  168092 +  -2.7   -3.9392   CTTTTCTATATCACG             CAGTG GACACCGG CACTG              TTGTTTGAAGTGAAA  54 48
   PAJ_p0154 NONE
   PAJ_p0155  170301 ..  170312 +  -2.2  -4.60949   GTAAAATCGGTGTCG                CTCT CACT AGGG                 TTTGTTTGTGCTCTA  63 342
   PAJ_p0156 NONE
   PAJ_p0157 NONE
   PAJ_p0158 NONE
   PAJ_p0159  174387 ..  174399 +  -4.1  -2.71791   TCACCGGGCGTCAGG                TCAGT CTC GCTGA                GTTTCGCCCGGGCGT  45 105
   PAJ_p0160  176513 ..  176525 +  -2.7  -4.67353   AAGACCAGCATGTGT                TGATA AAG TGTCA                TTTTTGCCTCAATAC  67 513
        ybcL  177454 ..  177471 + -11.3  -4.18018   GTACACATAAAAAAA             CACCCTG CGGA CAGGGTG              TTTTGGATGAAAACG  89 48
   PAJ_p0165  181649 ..  181660 +  -3.6  -3.85698   TAAAGACTCAACGGA                GGCG CGAT TGCC                 TTTATCCCAGCCGCG  56 307
   PAJ_p0169  184736 ..  184751 + -11.8  -2.72344   TAATCATGTCCTGGA              GCGCCC CGAC GGGCGC               TCATTACCGCTGCGC  76 38
   PAJ_p0170  185473 ..  185492 + -12.1  -5.36314   ACGATGATAAAAAAA            CGGCCCC TGTAAC GGGGCCG             TTTTTTCATGTTTTC 100 34
        yqiG  192207 ..  192234 + -14.9  -4.67982   CGCTAGTCGTCACCG        CCGGCATCTGC CCGCAT GCAGGTGCCGG         TTTTATTCCCTCCCA 100 35
        apbE  193466 ..  193486 +    -6  -4.55287   ACGTAATGTCTGCGG            CGTCAGCC CTTTT GGCAGGCG            TTTTGTCTCGCTGGC  75 259
        yfcI  196871 ..  196888 +  -9.9  -3.87994   CGCCTCATCCTGTTC             CGTGCAT GTTA ATGCACG              TTTGTCGCAGTAAAT  80 110
         mqo  198840 ..  198863 + -13.8  -6.23545   TCTGAACGAAACTAA          GCCCGCGCCA TCCG TGACGCGGGC           TTTTTTTTGTTTAGA 100 49
   PAJ_p0184  205224 ..  205234 +  -6.8  -4.18161   TTCGTGCTGCTGCAG                 CGGA TAG TCCG                 TTTTCAACGTTTCTA  70 170
   PAJ_p0186 NONE
   PAJ_p0187 NONE
   PAJ_p0188  210229 ..  210281 +  -4.8  -3.39353   CTGGCACCATCAGCC TGCTATCAGAGCCT-GCTGCCTGTAC TCT GAACAGGC-GCAAGGCGATGCTGGCG TTCCTGTCTTAATCT  54 121
        cph2  211965 ..  212000 +  -3.8  -4.09117   GTTGAGCCAGAGGGA    AAGACAT-CGCCCGGGC ATT GCCCGGACGGATGACGG    TTATTTGTCGCTACC  59 50
        rhtC  213957 ..  213967 +  -6.8   -3.5394   CGCTCGTTAACCAGT                 CTGG CTT CCAG                 TTTGAAACCGCATTT  60 290
         tsr  216505 ..  216527 + -13.4  -4.82128   CTGGCAGCTTTTAAA           CGCCTGATGC CCT GCAACAGGCG           TTTTATATTTGATAA 100 80
   PAJ_p0197 NONE
        malK  220033 ..  220049 +  -3.7  -2.72954   GCGGTTTAACGATCT              TTTTACC TAA GGGAAAA              TCATGTCTGCTATTC  43 32
        ugpB NONE
        yurN NONE
        araQ NONE
   PAJ_p0202  224361 ..  224377 +  -2.1  -4.77036   AGACAAACGCCAATC              GCGCCAG TAT CTGGCAA              TTTTTGCTGGTCAAA  68 400
   PAJ_p0204 NONE
   PAJ_p0205 NONE
   PAJ_p0206  226695 ..  226707 +  -4.8  -3.40309   GAACCTAGTATTAAC                GTGC AAGGG GCAC                TTATGCCTGCTTGTC  54 196
         bcp  227282 ..  227297 +    -6  -3.35371   CCGTGAAAAAATACC              GCCAGG CCAA CCCGGC               TTAATTCCCGATCTG  56 6
        dsbD NONE
        ygeA  229783 ..  229806 +  -2.5  -5.05228   CCATGATTCCAGCGT          CTTGATTGA AGCGGG TTGATCAAG           TTTTTGTACTTTCAT  74 379
   PAJ_p0211  231175 ..  231185 +  -2.4  -3.88603   CAGCAAGGGCAACAG                 CAGC AGG GCGG                 TTAATTTTTCTCGCT  53 11
   PAJ_p0213  233750 ..  233767 +  -2.6  -3.30124   GACAGCTATCTTAAG             CTGGCC GCTGCG GGCAAG              TTGTAACCACTGACC  47 2
        tauC NONE
        cysA NONE
   PAJ_p0216 NONE
        ycgI  236842 ..  236855 +  -9.5  -3.74747   ACATGTCGACTTTCT               GCGGG ACGA CCCGC                TTTCCTGAGAGTTCC  79 104
   PAJ_p0218  240847 ..  240859 +  -3.3  -3.76125   CACATCATCTTTATG                CGTCA GTG TGCCG                TTTGCATTGACCTCA  51 392
   PAJ_p0220  243217 ..  243233 +  -3.7  -5.12172   ATTTATGTTAAATGA              TTGGTTT TAC AACCCAA              TTTTCTTTGTTGGTG  77 386
   PAJ_p0221 NONE
   PAJ_p0222  246886 ..  246903 +  -8.4  -4.18164   CGCTACGTAAAATCT             GCAGGG TTTCTC CCCTGC              TTCTTTTACAGAATT  76 370
         cre  248067 ..  248077 +  -2.6  -4.85782   TTCTATTTTACCGCT                 TATA CGT TATA                 TTTGTTTTTAACAGC  69 106
         tcp  253727 ..  253739 +  -4.1  -2.94099   CGCTGAGAGGTATGG                TGGAA ACG TTCCG                TGTCTGATGAAAACC  47 6
   PAJ_p0227  254169 ..  254195 + -12.3  -5.60993   CGTCGCCTCCGTGCT        GGCCCGTC-GCG TTCA TGCTGACGGGCC         TTTTTTTGTCCGACG 100 126
        artJ NONE
        puuR NONE
       sardH  259044 ..  259065 + -12.3  -2.54702   CAGACCACAGAGACA           GGCTATGCG AAAG CGCATGGCC            TGCATTGGCCTGTCT  78 83
        yciR  266049 ..  266074 +  -4.7  -3.98913   TCTGCACCTGGACTC         CGGAGC-GGC AGCCATC GTCAGCTCCG         TTCTTTCACTCTGCC  61 251
        ycdC  284439 ..  284454 +  -6.1  -2.87468   CGTGTCTGCGCGCTT              GCCAG CAATAT CTGGC               TGTGCTCTGGTGGCC  51 429
   PAJ_p0256 NONE
   PAJ_p0257  286969 ..  286986 +  -2.8  -5.12617   CGGAAGAATTTCAAA             TTGTTA TTACGT TAACAA              TTTTTTACCTCCTTA  75 516
        fliD  288570 ..  288582 +  -4.7  -3.98762   GGTACACCTTGCCAT                CAGCG CGC CGCCG                TTTGATGTTGTCCTT  61 78
        fliC  290150 ..  290177 +   -15  -3.30159   TAATCGACAATTTAA        GAACCACGCTTT TTGC AGAGCGTGGTTC         TTCTCAGAGGATTAA 100 38
        yoaF  291119 ..  291129 +  -2.4  -3.35679   GGCATCATCTTTAAG                 GGCG TAT CGCA                 TTATGCCTACCCCGG  45 52
   PAJ_p0262 NONE
   PAJ_p0263  292888 ..  292901 +  -5.3  -3.20573   CACCCCTTTCTTTTT               TTCCT CCAG AGGAA                TATTGCTGTCGATAA  52 401
         cga NONE
        pgnd NONE
        pzwf  301791 ..  301803 +  -2.6  -3.59262   ATGCCCCCCGGCGGC                TGGG TCGAT CCCG                TTTGAGCCTATGGAG  49 8
   PAJ_p0270  302525 ..  302536 +    -3  -3.05935   ATTAATTACTTGATT                TCAA CGCG TTGA                 TTCGATGGGAAATAT  43 28
   PAJ_p0271  303264 ..  303285 +  -4.3  -4.54727   AAAAGGGCTCGAGGG           CGACCCGGT CACC GCCGCGTTG            TTTTCCTTTACGGCC  67 134
   PAJ_p0272  304023 ..  304046 + -10.4  -3.74251   CTTAGTGTTTATAAG          GTCCGCTTCTG GCA CA-AAGCGGAC          TTTGCTCAAGCTGTG  83 406
   PAJ_p0273 NONE
   PAJ_p0274  305970 ..  305980 +  -2.4  -3.72893   GACGGTGCCAAACTG                 CCGG AAG CCAG                 TTTACTCAGGAGGTC  50 239
   PAJ_p0276  308336 ..  308349 +  -5.9  -3.31461   CTTATAAGCTAAATC               GGGGC CAGC GCCTC                TTGTCAAGCTGGCTG  56 176
   PAJ_p0280  321089 ..  321107 -  -8.8  -4.42062   TACCGCTGAAAGAAA             CGTTGAGC GTG GCTCAGCG             CATCTCTGAAGGCGA  86 20
        aroQ  318893 ..  318913 -    -9  -3.14132   TTGCCGGGTTACGAA            GCGTCAAC TTCCT GCTGACGC            TTCGGGGAGTTAAGG  68 155
        ndvB  309092 ..  309111 -  -2.8  -3.85522   AATTTAGCATAAGAA            TGC-GGTCA TGA TGACCTGCT            ACCCGCTAATCAACT  54 77
   PAJ_p0277  308295 ..  308321 -  -2.9  -5.08601   CTACGCTAACAAAAA        GCCCGGC-CTCA TAAG TGAGCGCAGTGC         TTATAAGCTAAATCG  72 258
   PAJ_p0275  305851 ..  305876 -  -6.9  -3.27476   ACGCTGAATTATCAA         TGTCTGCTTCTG GCA CAGA-GCGGACA         CGGCATCAATATTAC  59 85
   PAJ_p0266 NONE
   PAJ_p0265 NONE
   PAJ_p0264 NONE
        yieF  290150 ..  290177 - -12.8   -3.2496   TAATCGACAATTTAA        GAACCACGCTTT TTGC AGAGCGTGGTTC         TTCTCAGAGGATTAA  81 47
   PAJ_p0255  283844 ..  283864 -  -3.3  -3.72576   CGCGGCTGGATTAAA            GATGAGT TGATCGC ACCCATC            GATCCGATGCAGTTG  51 272
        ycdM NONE
        ycdL  281103 ..  281115 -  -6.2  -3.28712   TTGTCCTTTTCACAA                GCGG TCAGG CCGC                GTTTTGTTCAGTTTT  57 17
        ycdK NONE
        ycdJ NONE
        ycdI  279253 ..  279265 -  -6.2  -2.91695   GTGATGCTTAAAGCA                CGCG ACAGG CGCG                GTCAAAGTCCAGGCG  54 5
        ycdH NONE
        ycdG  277207 ..  277240 -  -6.7  -4.58685   AAAGGCGGTGAAAAA     TGCCTGGTTAGTGTT GTGA AACGATCACCAGGCA      CCCTTAACACCCACT  78 65
   PAJ_p0246 NONE
        ycjG NONE
        yliA  273130 ..  273140 -  -3.2  -2.70932   CTGGTCGTTGAATTA                 TCGC AAT GCAA                 TGCCGTCAGCGACCC  41 12
        yliB  271497 ..  271516 -  -2.8  -2.64274   ATTCCTTGAAATGCA            CTGTGACGG GTG CCCTCAC-G            TCCTTTTGCCCTGCG  41 71
        yliC NONE
        yliD NONE
   PAJ_p0240 NONE
        dppA  267638 ..  267654 -    -3  -3.83323   CGGACATAATTGAAA             CG-CTGT CCGG ACAGGCG              TTCGCCCCATCGTGG  52 169
        lysR  266129 ..  266142 -  -8.1  -3.54129   CAGAGGGCGTGGAAA               CGCCT GCAC AGGCG                GAGTGGCTAAAGACG  69 289
        galS  262710 ..  262722 -  -4.8  -2.69601   TTTACATCAAATGCA                GGCT GCGCA AGCC                TTCGGCAGAAGCCGG  47 47
        mocC NONE
        ydgJ NONE
        iolH  259042 ..  259067 - -13.3  -3.04269   TGCAGACCACAGAGA         CAGGCTATGCG AAAG CGCATGGCCTG          CATTGGCCTGTCTCG  82 381
        yckA NONE
        yqiZ  254577 ..  254590 -  -2.3  -4.58395   TTGAGGCGCTAAAAA               GTCTC AGGA GTGAC                AGAATTGCTCCCGTC  63 41
        fliC  250412 ..  250424 -  -6.2  -5.00923   AAACAGTAAAGAAAA                CGGC TTCGT GCCG                GGAGCCGATAATACG  83 250
         tse  248641 ..  248651 -  -2.4  -3.48772   AACTGGCGCACAGAA                 CCCC TGC GGGT                 TATACAGAATTCACG  47 77
        ykgB  240365 ..  240404 -  -4.2  -4.30978   TGGAATCCATGAAAA  TGGA-GATTCCGTTGCTGG CAC CCTGCGATGGGATCATCCA  GCAGGTTAACGTACA  66 270
   PAJ_p0212  231148 ..  231163 -  -2.4  -4.31608   AAGAAACAGAAAGAA              GCGGCC AGTC GACAGC               AAGGGCAACAGCAGC  60 174
   PAJ_p0210  229157 ..  229169 -  -4.9  -4.15044   GGCCGCCTGAATAAA                CAATT CTC AATTG                CTACCCTGGTACCAC  62 321
        dgdR  224141 ..  224159 -  -4.5  -3.31915   GCCGGACAAAAAGCA             GGGCGTT GTTTA AACGACC             ACAATCTGACAGCCC  51 133
   PAJ_p0196 NONE
        ywfM  216748 ..  216763 -  -4.6  -2.87931   GTTATCGTTGATACA              GGCGCC ACAG GACACC               TCTGCTCAGGTTCAG  46 173
   PAJ_p0194  216363 ..  216376 -  -5.2   -4.2679   TAATCGGGAGCAAAA               CCGC GCCGCA GCGG                TATCATCGCCGGTTT  69 28
        rimL  213690 ..  213708 -  -2.4  -3.77196   TCATCATTCACCAAA             TAAGCAGC CTG ACTGTTTA             CCCTGGGCGCGCTTA  50 204
        ycnD  211967 ..  211998 -   -13  -3.71873   TGAGCCAGAGGGAAA      GACAT-CGCCCGGGC ATT GCCCGGACGGATGAC      GGTTATTTGTCGCTA  95 28
        lplA  204771 ..  204805 -  -4.9  -4.57341   AACCGGCTTGAAAAA    GAGGTTAGCCTGGTCA CCGT TGCCCAGGC-ACCCGC     TCTGGCGAAACACTA  71 387
   PAJ_p0183  203224 ..  203236 -  -3.3  -2.73038   TAGACCCAAATTAAC                GGCCA GGG CAGCC                ACTTTTATCAAAACC  43 299
         dat NONE
         ddc  200140 ..  200174 - -11.4  -4.64676   GCATGGGGAATAAAA     GCGCCATGCCGGTGAC ACT GTCACCGGCATGATAA     AGCATTTAGCGTAAT  95 31
   PAJ_p0180  199366 ..  199378 -  -3.3  -3.48814   AACAAAACAGACGAA                GCGCA CCT TTCGC                CTTCCCCCGGTCACT  51 51
   PAJ_p0179  198840 ..  198863 -   -16  -3.61468   TCTGAACGAAACTAA          GCCCGCGCCA TCCG TGACGCGGGC           TTTTTTTTGTTTAGA 100 58
        dcuS NONE
        dcuR  192808 ..  192838 -  -2.5  -3.60792   GCGGCAACGTGCAAA      CGTTA-GGCGCACC TCGT GATGCGCCGCAGCA       GGGATGGGCAATCGG  47 413
        ygjE NONE
        fumA  185473 ..  185492 - -12.1  -5.67967   ACGATGATAAAAAAA            CGGCCCC TGTAAC GGGGCCG             TTTTTTCATGTTTTC 100 51
        yhcS NONE
   PAJ_p0167  182112 ..  182122 -  -8.2  -3.01924   CACGGGCTTTCAATA                 CCGG ATA CCGG                 AATCGTGGGAACCAG  63 9
         cdh NONE
         blt  179295 ..  179320 -  -8.3  -3.60419   AGGGGCAAACCAGAA         TCCGCCAGC GTGAGATT GCTGGCAGA          TTACCCTTAATTATG  69 36
        proP  177454 ..  177471 - -11.3  -5.76633   GTACACATAAAAAAA             CACCCTG CGGA CAGGGTG              TTTTGGATGAAAACG 100 173
        ydcX  176309 ..  176323 -  -5.6   -3.0644   ATTGAAGTGCGAAGA               CCGCCC AGC AGGCAG               CGATGTATCTGACCT  52 55
       glsA1  139321 ..  139352 -  -8.6  -4.07678   CTGGAAAAGATGAAA      CCCCAGGCGTTGCT GATT AACACCGCGCGGGG       CGGCCTAATTCACGA  77 278
   PAJ_p0130  138008 ..  138049 -  -5.1  -2.53449   ATATTTTCAGAATAC CGGGCTTTTCCTCCTGCGC CATG GCGTAAGAAGAAAAGATCA  CATCGAGGAAATAAA  47 23
   PAJ_p0129  137400 ..  137412 -  -2.6  -5.06816   ACGCGTTAATAAAAA                GCCA GAACG CGGC                TGTCTGACTTTGCGC  72 3
        ynaJ  136220 ..  136238 - -12.4  -3.76224   TTCTGATTCATCAAA             CGCCCGCA TAA TGCGGGCA             TTTTTATTACTTGCC  93 32
        ytfJ NONE
        crtE NONE
        crtX  132820 ..  132835 -  -4.6  -2.69433   GAATCAGATCATAAT              GCGGTT GCAT AGCCGC               TCCCACTTAAGACAG  45 3
        crtY NONE
        crtI NONE
        crtB NONE
   PAJ_p0118 NONE
   PAJ_p0117  125523 ..  125535 -  -4.8  -3.87373   GACAGTCCGTAGAAA                GCAC CCGCC GTGC                CACCTATGTATTTCG  58 191
   PAJ_p0115 NONE
        rhtC NONE
   PAJ_p0113  123162 ..  123175 -  -4.5  -3.07307   CAAAGCCTCAGGTAA               CTGCA ACAC CGCAG                GCGTGCTGGGACCGG  47 461
        ydcN  118773 ..  118788 - -10.4  -3.17075   CTGTGTTTAACCGAA              GGCAGG GAAA CCTGCC               TTCACACATGCTCCA  74 27
        yeiR  112544 ..  112565 - -14.5  -5.01823   ACAACAACAATAAAA           CAGGCGCAT GACA ATGCGCCTG            TTTCTTATCACTTTC 100 122
        repA  109741 ..  109753 -  -6.3  -4.10161   GATCAGTCTTCAAAA                TCGAT GTC ATCGA                GCGTATCGATTCCTT  69 0
        parA NONE
        parB  105696 ..  105716 -  -7.6   -5.4833   TGAGGGAATAAAAAA            CCAGACAA TCAGT TTGCCTGG            TTTGATATGTTTCAT 100 37
   PAJ_p0093   99758 ..   99793 -  -6.2  -3.14344   TATTCCTGCTAGTAA    TGGCGGCACC-TGAAAT AAA ATCTCACGAAACCGCCA    TTTATAAAAATCAAC  57 40
   PAJ_p0092   98779 ..   98789 -  -6.8   -3.1855   GCGTCTAAGATTTAA                 GCTG TGC CAGC                 GAGAGAAAAGATGGG  59 480
        yfeA NONE
        yfeB NONE
        yfeC NONE
        yfeD   93761 ..   93793 -  -9.9  -2.54098   TGCGTTAATTAACAC     GGCTGGTCGCCCTG TTCATT CAGG-CGACCAGCA      CAGTAATCAGCAGGA  67 32
        yagT NONE
        yagS NONE
        yagR   89778 ..   89788 -  -5.4  -3.70902   CTGCCCATATTTAAA                 GGAT TTT ATCC                 AGCGTGATGGGTAAA  61 10
        ygfJ NONE
        yagQ   88149 ..   88192 -    -9  -3.54919   AAGCATCGCCTTAAA GCGCGGT-CTGGCGGCA-GAC TGAAC ATCGCGCCGCCAGAACCG-GC TGGTATAATATCAGT  72 36
        rpiR   83418 ..   83441 -  -5.2  -4.11216   CCCGGAGCGCGAAAA          GCGTGCCCGGC GAG GCCAGG-ACGG          AGGCAATGTCGTCAA  64 100
       lip-1   81078 ..   81094 - -12.3  -3.66378   TATACCTTACCGAAA              CCCGCTT GCG AAGCGGG              ATCCGTCAAACTTTC  93 181
        rluF NONE
        yqkA NONE
   PAJ_p0072   78211 ..   78222 -  -5.8    -3.786   GGAGAAAATGCTAAA                GGCA GGGC TGCC                 GGTCTCACTGCTCAT  63 509
        ycgF   74949 ..   74964 -    -9  -2.64107   TAAACGTTCAGACTA              TGCCGT TATA ACGGCA               TGAGCATACTTACAT  64 35
        ygbI   73371 ..   73404 -  -3.9   -4.2558   CATCGGCGATGAAAA     TGCAGCCATGGTCTGG CAC CCAAAACATGG-TGAA     GACGGCGATACACGC  64 338
        yciR   70582 ..   70638 -  -5.9  -4.07568   GCGCTGCTGGCAAAA CGCCCTGAAGCAGGCAGTC-CTGC TTTTCAGGTG ACAGCGACTGTCGCCTTCAGGGCA TTTACTTCTGCAGCA  66 27
        ascG   66299 ..   66314 -    -9   -3.8647   ACTCAGCACAGTAAA              GGCATC AGGT GATGCC               GGTAATGGAATCACG  77 14
        supH   63183 ..   63196 -  -9.5  -4.21194   GCTCATGATTGAAAA               GCCGC CATT GCGGC                GTTAATCAAAAGGGA  87 27
   PAJ_p0059 NONE
        yaiC   60184 ..   60197 -  -6.7  -3.33696   CGCCGGGCGAAGGAA               TGCCT TTAC AGGCA                GGGATGATTTTTACC  58 319
   PAJ_p0055   58335 ..   58355 -    -4  -2.80816   GGCTTATTCATCACA            TCCCTCCT GAACG AAGAGGAA            TACGTTATCTCCCTG  46 116
   PAJ_p0054   58013 ..   58048 -    -9  -3.10464   GCAGCAAGCGCAACA    TGGCGTTGCCCCGTCA TCGC TGACGAGACAACGGGA     AACACGTTAATGACG  67 161
        intA   56528 ..   56549 -  -7.3  -3.49886   ATCTGACATAATTAA           GCGGTGT TGATGAGG ACACCGC            TTTTTTATTGGAAAC  63 56
        fhuE   53436 ..   53450 -  -2.7  -3.14587   TGTCATAAAATCAGA               CCCGC ATAAG GCGTG               ATGTTATTTTTTTCC  45 99
   PAJ_p0050   52692 ..   52709 - -10.5  -3.36557   AAGCAGGGGAAGCAA             GCGCCCC GGGT GAGGCGC              TCACTGGTGAAAGTC  77 48
   PAJ_p0049 NONE
   PAJ_p0048   51142 ..   51159 -  -4.7  -2.60763   TTCAGATTTTACAAC             GACGTGG TCAG CCCCGCC              CCGCGCATCACGCCA  47 33
        yebG   50667 ..   50701 - -16.7  -3.05561   AGACAGGAAACGAGA    GTGGTTATGCTGGAAG CAGG CTTCCAGCATAACC-C     GGTCAGGCGGCTTTG 100 28
         tcp   47888 ..   47925 - -19.5  -2.71144   TATCCGGGTTAATGA   CTGAAAACACAACCCGCA CCG TGCGGGTTGTGTTTT-AG   CGGTTTACCGCGCGT 100 40
        budA NONE
        budB NONE
        budC   41484 ..   41500 -  -7.9  -3.08032   CCGGTCGTAAAATCA              TCCGCTG CCG CAGCGGG              GGGATTGGCGGCGGG  61 330
   PAJ_p0038   41101 ..   41131 - -11.8  -2.73483   ACGCTATCTGAACGA       TCGCCAGGCAGTGA AAT TCACGACCTGGCGT       TAGCAGGACAGATTA  76 38
   PAJ_p0035   38736 ..   38758 -   -12   -3.5394   AAAGGCTGGCTGAAA           CAGGCCGC ATCGTCA GCGGCCTG           TTCCACGCTAGAAGT  86 45
   PAJ_p0033   37111 ..   37128 -  -8.4  -3.91402   GCATACAAACGTAAA             CCAGCC TTCACC GGCTGG              TTTTTTTTGCGCCAT  74 170
       pdxA2   29717 ..   29736 -  -9.3  -4.36914   GCCCGGTGGAGAAAA            GGCGATG TCTTGC CATCGCC             TGAGTGACCAGAAAG  83 61
         tpl   27634 ..   27648 - -12.8  -2.78278   ATAGGAGAGAAACAG               GGCCCC TGC GGGGCC               AGGGTTGTATTAAAT  79 35
        tutB   25785 ..   25798 -  -3.1  -2.74144   TTCTGATCTTGAAAC               CAGTC TGTT AACTG                AACGAGTAAAAATCA  41 479
        ydfI   23341 ..   23372 -  -5.8  -3.75332   ACGCGCGAACTCAAA      CCAGATACGGGCGTC GTT GCCGACCA-ATCTGG      CCGTCCAAACGATAA  61 89
        pagO   19228 ..   19244 - -12.3  -4.07568   GGTGGCCCTGGAAAA              CGGTGAC AGT GTCACCG              CATGGATATATCAAC  91 96
         tsr   16889 ..   16907 - -10.3   -5.4505   TCGGGCAATAAAAAA             GCGCTGT CGTAC ACAGCGC             TTTTTGTCGCCAGCA 100 74
        yiaT    9497 ..    9508 -  -2.2  -4.89233   GATCAACAGCAAAAA                GC-GC AAA GCAGC                CGCAAAGAAATCGCC  72 166
   PAJ_p0009    8693 ..    8713 -  -7.5  -4.66833   GTCGAATGTCAAAAA            GAGTTCCTG GTT CAGGACCCC            GACGGCTATCTTCTC  83 100
        arnB NONE
        arnC NONE
        arnA NONE
        yfbH NONE
        arnT NONE
        yfbW NONE
        yfbJ     467 ..     483 -  -2.1  -3.70902   TGGCTCAGAGCGAAA              CCGTGCT TTC AGCTCGT              TTTTCCTGGCTTGAC   0 17
