Pden_2836	PWY-6610	adenine and adenosine salvage IV
Pden_2845	PWY-6840	homoglutathione biosynthesis
Pden_2845	PWY-7255	ergothioneine biosynthesis I (bacteria)
Pden_2852	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Pden_2852	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Pden_2856	PWY-1881	formate oxidation to CO<sub>2</sub>
Pden_2856	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_2856	PWY-6696	oxalate degradation III
Pden_2860	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_2860	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_2860	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_2861	PWY-6123	inosine-5'-phosphate biosynthesis I
Pden_2861	PWY-6124	inosine-5'-phosphate biosynthesis II
Pden_2861	PWY-7234	inosine-5'-phosphate biosynthesis III
Pden_2871	PWY-1361	benzoyl-CoA degradation I (aerobic)
Pden_2871	PWY-5109	2-methylbutanoate biosynthesis
Pden_2871	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Pden_2871	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Pden_2871	PWY-5177	glutaryl-CoA degradation
Pden_2871	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_2871	PWY-6435	4-hydroxybenzoate biosynthesis V
Pden_2871	PWY-6583	pyruvate fermentation to butanol I
Pden_2871	PWY-6863	pyruvate fermentation to hexanol
Pden_2871	PWY-6883	pyruvate fermentation to butanol II
Pden_2871	PWY-6944	androstenedione degradation
Pden_2871	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Pden_2871	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Pden_2871	PWY-7007	methyl ketone biosynthesis
Pden_2871	PWY-7046	4-coumarate degradation (anaerobic)
Pden_2871	PWY-7094	fatty acid salvage
Pden_2871	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Pden_2871	PWY-735	jasmonic acid biosynthesis
Pden_2871	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Pden_2884	PWY-5686	UMP biosynthesis
Pden_2885	PWY-6936	seleno-amino acid biosynthesis
Pden_2885	PWY-7274	D-cycloserine biosynthesis
Pden_2916	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Pden_2918	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Pden_2928	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_2928	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_2928	PWY-6454	vancomycin resistance I
Pden_2928	PWY-6901	superpathway of glucose and xylose degradation
Pden_2932	PWY-5530	sorbitol biosynthesis II
Pden_2932	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Pden_2933	PWY-5101	L-isoleucine biosynthesis II
Pden_2933	PWY-5103	L-isoleucine biosynthesis III
Pden_2933	PWY-5104	L-isoleucine biosynthesis IV
Pden_2933	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Pden_2944	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Pden_2956	PWY-6562	norspermidine biosynthesis
Pden_2961	PWY-5913	TCA cycle VI (obligate autotrophs)
Pden_2961	PWY-6549	L-glutamine biosynthesis III
Pden_2961	PWY-6728	methylaspartate cycle
Pden_2961	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Pden_2961	PWY-7124	ethylene biosynthesis V (engineered)
Pden_2961	PWY-7254	TCA cycle VII (acetate-producers)
Pden_2961	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Pden_2962	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_2962	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_2962	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_2989	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_2989	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_2989	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_2996	PWY-6966	methanol oxidation to formaldehyde I
Pden_3009	PWY-3461	L-tyrosine biosynthesis II
Pden_3009	PWY-3462	L-phenylalanine biosynthesis II
Pden_3009	PWY-6120	L-tyrosine biosynthesis III
Pden_3009	PWY-6627	salinosporamide A biosynthesis
Pden_3022	PWY-3781	aerobic respiration I (cytochrome c)
Pden_3022	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Pden_3022	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Pden_3022	PWY-5690	TCA cycle II (plants and fungi)
Pden_3022	PWY-6728	methylaspartate cycle
Pden_3022	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Pden_3022	PWY-7254	TCA cycle VII (acetate-producers)
Pden_3022	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Pden_3028	PWY-3781	aerobic respiration I (cytochrome c)
Pden_3028	PWY-4521	arsenite oxidation I (respiratory)
Pden_3028	PWY-6692	Fe(II) oxidation
Pden_3028	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Pden_3053	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Pden_3059	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Pden_3135	PWY-4202	arsenate detoxification I (glutaredoxin)
Pden_3135	PWY-4621	arsenate detoxification II (glutaredoxin)
Pden_3225	PWY-1361	benzoyl-CoA degradation I (aerobic)
Pden_3225	PWY-5109	2-methylbutanoate biosynthesis
Pden_3225	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Pden_3225	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Pden_3225	PWY-5177	glutaryl-CoA degradation
Pden_3225	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3225	PWY-6435	4-hydroxybenzoate biosynthesis V
Pden_3225	PWY-6583	pyruvate fermentation to butanol I
Pden_3225	PWY-6863	pyruvate fermentation to hexanol
Pden_3225	PWY-6883	pyruvate fermentation to butanol II
Pden_3225	PWY-6944	androstenedione degradation
Pden_3225	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Pden_3225	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Pden_3225	PWY-7007	methyl ketone biosynthesis
Pden_3225	PWY-7046	4-coumarate degradation (anaerobic)
Pden_3225	PWY-7094	fatty acid salvage
Pden_3225	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Pden_3225	PWY-735	jasmonic acid biosynthesis
Pden_3225	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Pden_3341	PWY-4202	arsenate detoxification I (glutaredoxin)
Pden_3341	PWY-4621	arsenate detoxification II (glutaredoxin)
Pden_3386	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Pden_3386	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Pden_3400	PWY-6823	molybdenum cofactor biosynthesis
Pden_3410	PWY-6167	flavin biosynthesis II (archaea)
Pden_3458	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Pden_3490	PWY-6215	4-chlorobenzoate degradation
Pden_3491	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Pden_3517	PWY-5028	L-histidine degradation II
Pden_3517	PWY-5030	L-histidine degradation III
Pden_3550	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Pden_3550	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Pden_3550	PWY-6143	CMP-pseudaminate biosynthesis
Pden_3556	PWY-6143	CMP-pseudaminate biosynthesis
Pden_3558	PWY-6143	CMP-pseudaminate biosynthesis
Pden_3558	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
Pden_3558	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
Pden_3558	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
Pden_3577	PWY-1361	benzoyl-CoA degradation I (aerobic)
Pden_3577	PWY-5109	2-methylbutanoate biosynthesis
Pden_3577	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Pden_3577	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Pden_3577	PWY-5177	glutaryl-CoA degradation
Pden_3577	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3577	PWY-6435	4-hydroxybenzoate biosynthesis V
Pden_3577	PWY-6583	pyruvate fermentation to butanol I
Pden_3577	PWY-6863	pyruvate fermentation to hexanol
Pden_3577	PWY-6883	pyruvate fermentation to butanol II
Pden_3577	PWY-6944	androstenedione degradation
Pden_3577	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Pden_3577	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Pden_3577	PWY-7007	methyl ketone biosynthesis
Pden_3577	PWY-7046	4-coumarate degradation (anaerobic)
Pden_3577	PWY-7094	fatty acid salvage
Pden_3577	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Pden_3577	PWY-735	jasmonic acid biosynthesis
Pden_3577	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Pden_3584	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_3584	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_3606	PWY-6902	chitin degradation II
Pden_3619	PWY-7560	methylerythritol phosphate pathway II
Pden_3620	PWY-6605	adenine and adenosine salvage II
Pden_3620	PWY-6610	adenine and adenosine salvage IV
Pden_3629	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Pden_3629	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Pden_3630	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Pden_3630	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Pden_3637	PWY-4381	fatty acid biosynthesis initiation I
Pden_3637	PWY-5743	3-hydroxypropanoate cycle
Pden_3637	PWY-5744	glyoxylate assimilation
Pden_3637	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3637	PWY-6679	jadomycin biosynthesis
Pden_3637	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Pden_3662	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Pden_3662	PWY-6167	flavin biosynthesis II (archaea)
Pden_3662	PWY-6168	flavin biosynthesis III (fungi)
Pden_3666	PWY-5269	cardiolipin biosynthesis II
Pden_3666	PWY-5668	cardiolipin biosynthesis I
Pden_3667	PWY-7560	methylerythritol phosphate pathway II
Pden_3668	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Pden_3668	PWY-5723	Rubisco shunt
Pden_3681	PWY-5743	3-hydroxypropanoate cycle
Pden_3681	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3681	PWY-6728	methylaspartate cycle
Pden_3681	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Pden_3688	PWY-4381	fatty acid biosynthesis initiation I
Pden_3688	PWY-5743	3-hydroxypropanoate cycle
Pden_3688	PWY-5744	glyoxylate assimilation
Pden_3688	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3688	PWY-6679	jadomycin biosynthesis
Pden_3688	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Pden_3689	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Pden_3696	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Pden_3697	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Pden_3697	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Pden_3697	PWY-6897	thiamin salvage II
Pden_3697	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Pden_3697	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Pden_3697	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Pden_3697	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Pden_3702	PWY-381	nitrate reduction II (assimilatory)
Pden_3702	PWY-5675	nitrate reduction V (assimilatory)
Pden_3702	PWY-6549	L-glutamine biosynthesis III
Pden_3702	PWY-6963	ammonia assimilation cycle I
Pden_3702	PWY-6964	ammonia assimilation cycle II
Pden_3711	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Pden_3711	PWY-7177	UTP and CTP dephosphorylation II
Pden_3711	PWY-7185	UTP and CTP dephosphorylation I
Pden_3717	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Pden_3737	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Pden_3780	PWY-6902	chitin degradation II
Pden_3784	PWY-7205	CMP phosphorylation
Pden_3785	PWY-723	alkylnitronates degradation
Pden_3794	PWY-5692	allantoin degradation to glyoxylate II
Pden_3794	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Pden_3795	PWY-5691	urate degradation to allantoin I
Pden_3795	PWY-7394	urate degradation to allantoin II
Pden_3809	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Pden_3809	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Pden_3813	PWY-5386	methylglyoxal degradation I
Pden_3816	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Pden_3818	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Pden_3875	PWY-5743	3-hydroxypropanoate cycle
Pden_3875	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Pden_3875	PWY-6728	methylaspartate cycle
Pden_3875	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Pden_3880	PWY-3461	L-tyrosine biosynthesis II
Pden_3880	PWY-3462	L-phenylalanine biosynthesis II
Pden_3880	PWY-6120	L-tyrosine biosynthesis III
Pden_3880	PWY-6627	salinosporamide A biosynthesis
Pden_3883	PWY-6829	tRNA methylation (yeast)
Pden_3883	PWY-7285	methylwyosine biosynthesis
Pden_3883	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Pden_3897	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Pden_3906	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Pden_3906	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Pden_3906	PWY-5989	stearate biosynthesis II (bacteria and plants)
Pden_3906	PWY-5994	palmitate biosynthesis I (animals and fungi)
Pden_3906	PWY-6113	superpathway of mycolate biosynthesis
Pden_3906	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Pden_3906	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Pden_3906	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Pden_3906	PWYG-321	mycolate biosynthesis
Pden_3915	PWY-5691	urate degradation to allantoin I
Pden_3915	PWY-7394	urate degradation to allantoin II
Pden_3919	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Pden_3921	PWY-6832	2-aminoethylphosphonate degradation II
Pden_3926	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_3926	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_3926	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_3927	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_3927	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Pden_3934	PWY-6164	3-dehydroquinate biosynthesis I
Pden_3936	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Pden_3939	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_3939	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_3939	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_3939	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Pden_3963	PWY-6823	molybdenum cofactor biosynthesis
Pden_3963	PWY-6891	thiazole biosynthesis II (Bacillus)
Pden_3963	PWY-6892	thiazole biosynthesis I (E. coli)
Pden_3963	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Pden_3970	PWY-6823	molybdenum cofactor biosynthesis
Pden_3970	PWY-6891	thiazole biosynthesis II (Bacillus)
Pden_3970	PWY-6892	thiazole biosynthesis I (E. coli)
Pden_3970	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Pden_3971	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_3971	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_3971	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_3973	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_3973	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_3992	PWY-2781	<i>cis</i>-zeatin biosynthesis
Pden_3997	PWY-7560	methylerythritol phosphate pathway II
Pden_4023	PWY-181	photorespiration
Pden_4029	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Pden_4029	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Pden_4029	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Pden_4030	PWY-6871	3-methylbutanol biosynthesis
Pden_4038	PWY-5659	GDP-mannose biosynthesis
Pden_4038	PWY-6073	alginate biosynthesis I (algal)
Pden_4038	PWY-6082	alginate biosynthesis II (bacterial)
Pden_4038	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Pden_4050	PWY-6825	phosphatidylcholine biosynthesis V
Pden_4051	PWY-6728	methylaspartate cycle
Pden_4051	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Pden_4051	PWY-7118	chitin degradation to ethanol
Pden_4051	PWY-7294	xylose degradation IV
Pden_4051	PWY-7295	L-arabinose degradation IV
Pden_4060	PWY-1042	glycolysis IV (plant cytosol)
Pden_4060	PWY-1622	formaldehyde assimilation I (serine pathway)
Pden_4060	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Pden_4060	PWY-5484	glycolysis II (from fructose 6-phosphate)
Pden_4060	PWY-5723	Rubisco shunt
Pden_4060	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Pden_4060	PWY-6886	1-butanol autotrophic biosynthesis
Pden_4060	PWY-6901	superpathway of glucose and xylose degradation
Pden_4060	PWY-7003	glycerol degradation to butanol
Pden_4060	PWY-7124	ethylene biosynthesis V (engineered)
Pden_4060	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Pden_4062	PWY-5101	L-isoleucine biosynthesis II
Pden_4062	PWY-6871	3-methylbutanol biosynthesis
Pden_4119	PWY-5392	reductive TCA cycle II
Pden_4119	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Pden_4119	PWY-5690	TCA cycle II (plants and fungi)
Pden_4119	PWY-5913	TCA cycle VI (obligate autotrophs)
Pden_4119	PWY-6728	methylaspartate cycle
Pden_4119	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Pden_4119	PWY-7254	TCA cycle VII (acetate-producers)
Pden_4119	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Pden_4144	PWY-5750	itaconate biosynthesis
Pden_4144	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Pden_4144	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Pden_4158	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Pden_4175	PWY-4261	glycerol degradation I
Pden_4182	PWY-6700	queuosine biosynthesis
Pden_4183	PWY-6703	preQ<sub>0</sub> biosynthesis
Pden_4185	PWY-6703	preQ<sub>0</sub> biosynthesis
Pden_4206	PWY-3162	L-tryptophan degradation V (side chain pathway)
Pden_4206	PWY-5057	L-valine degradation II
Pden_4206	PWY-5076	L-leucine degradation III
Pden_4206	PWY-5078	L-isoleucine degradation II
Pden_4206	PWY-5079	L-phenylalanine degradation III
Pden_4206	PWY-5082	L-methionine degradation III
Pden_4206	PWY-5480	pyruvate fermentation to ethanol I
Pden_4206	PWY-5486	pyruvate fermentation to ethanol II
Pden_4206	PWY-5751	phenylethanol biosynthesis
Pden_4206	PWY-6028	acetoin degradation
Pden_4206	PWY-6313	serotonin degradation
Pden_4206	PWY-6333	acetaldehyde biosynthesis I
Pden_4206	PWY-6342	noradrenaline and adrenaline degradation
Pden_4206	PWY-6587	pyruvate fermentation to ethanol III
Pden_4206	PWY-6802	salidroside biosynthesis
Pden_4206	PWY-6871	3-methylbutanol biosynthesis
Pden_4206	PWY-7013	L-1,2-propanediol degradation
Pden_4206	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Pden_4206	PWY-7118	chitin degradation to ethanol
Pden_4206	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Pden_4206	PWY-7557	dehydrodiconiferyl alcohol degradation
Pden_4208	PWY-5482	pyruvate fermentation to acetate II
Pden_4208	PWY-5485	pyruvate fermentation to acetate IV
Pden_4208	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4209	PWY-1281	sulfoacetaldehyde degradation I
Pden_4209	PWY-5482	pyruvate fermentation to acetate II
Pden_4209	PWY-5485	pyruvate fermentation to acetate IV
Pden_4209	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4209	PWY-6637	sulfolactate degradation II
Pden_4213	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Pden_4213	PWY-7118	chitin degradation to ethanol
Pden_4219	PWY-6748	nitrate reduction VII (denitrification)
Pden_4219	PWY-7084	nitrifier denitrification
Pden_4246	PWY-5101	L-isoleucine biosynthesis II
Pden_4246	PWY-5103	L-isoleucine biosynthesis III
Pden_4246	PWY-5104	L-isoleucine biosynthesis IV
Pden_4246	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Pden_4257	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4257	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Pden_4257	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Pden_4257	PWY-6596	adenosine nucleotides degradation I
Pden_4257	PWY-6606	guanosine nucleotides degradation II
Pden_4257	PWY-6607	guanosine nucleotides degradation I
Pden_4257	PWY-6608	guanosine nucleotides degradation III
Pden_4257	PWY-6999	theophylline degradation
Pden_4258	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4258	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Pden_4258	PWY-6538	caffeine degradation III (bacteria, via demethylation)
Pden_4258	PWY-6596	adenosine nucleotides degradation I
Pden_4258	PWY-6606	guanosine nucleotides degradation II
Pden_4258	PWY-6607	guanosine nucleotides degradation I
Pden_4258	PWY-6608	guanosine nucleotides degradation III
Pden_4258	PWY-6999	theophylline degradation
Pden_4260	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4260	PWY-6606	guanosine nucleotides degradation II
Pden_4260	PWY-6608	guanosine nucleotides degradation III
Pden_4260	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Pden_4275	PWY-1281	sulfoacetaldehyde degradation I
Pden_4275	PWY-5482	pyruvate fermentation to acetate II
Pden_4275	PWY-5485	pyruvate fermentation to acetate IV
Pden_4275	PWY-5497	purine nucleobases degradation II (anaerobic)
Pden_4275	PWY-6637	sulfolactate degradation II
Pden_4277	PWY-1281	sulfoacetaldehyde degradation I
Pden_4277	PWY-6637	sulfolactate degradation II
Pden_4278	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Pden_4278	PWY-7494	choline degradation IV
Pden_4297	PWY-5663	tetrahydrobiopterin biosynthesis I
Pden_4297	PWY-5664	tetrahydrobiopterin biosynthesis II
Pden_4297	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Pden_4297	PWY-6703	preQ<sub>0</sub> biosynthesis
Pden_4297	PWY-6983	tetrahydrobiopterin biosynthesis III
Pden_4297	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Pden_4305	PWY-1042	glycolysis IV (plant cytosol)
Pden_4305	PWY-5484	glycolysis II (from fructose 6-phosphate)
Pden_4305	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Pden_4305	PWY-7003	glycerol degradation to butanol
Pden_4312	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4312	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4332	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Pden_4377	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Pden_4377	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Pden_4377	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Pden_4377	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Pden_4377	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_4377	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_4377	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Pden_4377	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Pden_4378	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Pden_4378	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Pden_4378	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Pden_4378	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Pden_4378	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_4378	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Pden_4378	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Pden_4378	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Pden_4386	PWY-4261	glycerol degradation I
Pden_4393	PWY-4261	glycerol degradation I
Pden_4393	PWY-6118	glycerol-3-phosphate shuttle
Pden_4393	PWY-6952	glycerophosphodiester degradation
Pden_4395	PWY-5278	sulfite oxidation III
Pden_4395	PWY-5340	sulfate activation for sulfonation
Pden_4395	PWY-6683	sulfate reduction III (assimilatory)
Pden_4395	PWY-6932	selenate reduction
Pden_4396	PWY-5278	sulfite oxidation III
Pden_4396	PWY-5340	sulfate activation for sulfonation
Pden_4396	PWY-6683	sulfate reduction III (assimilatory)
Pden_4396	PWY-6932	selenate reduction
Pden_4398	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4398	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4399	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4399	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4421	PWY-7399	methylphosphonate degradation II
Pden_4423	PWY-6749	CMP-legionaminate biosynthesis I
Pden_4424	PWY-5941	glycogen degradation II (eukaryotic)
Pden_4424	PWY-6724	starch degradation II
Pden_4424	PWY-6737	starch degradation V
Pden_4424	PWY-7238	sucrose biosynthesis II
Pden_4426	PWY-622	starch biosynthesis
Pden_4427	PWY-622	starch biosynthesis
Pden_4428	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Pden_4428	PWY-622	starch biosynthesis
Pden_4429	PWY-5941	glycogen degradation II (eukaryotic)
Pden_4429	PWY-622	starch biosynthesis
Pden_4429	PWY-6731	starch degradation III
Pden_4429	PWY-6737	starch degradation V
Pden_4429	PWY-7238	sucrose biosynthesis II
Pden_4430	PWY-5316	nicotine biosynthesis
Pden_4430	PWY-5381	pyridine nucleotide cycling (plants)
Pden_4430	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Pden_4430	PWY-7342	superpathway of nicotine biosynthesis
Pden_4432	PWY-5316	nicotine biosynthesis
Pden_4432	PWY-7342	superpathway of nicotine biosynthesis
Pden_4435	PWY-5958	acridone alkaloid biosynthesis
Pden_4435	PWY-6543	4-aminobenzoate biosynthesis
Pden_4435	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Pden_4435	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Pden_4435	PWY-6722	candicidin biosynthesis
Pden_4452	PWY-6683	sulfate reduction III (assimilatory)
Pden_4457	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Pden_4457	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Pden_4460	PWY-6938	NADH repair
Pden_4462	PWY-381	nitrate reduction II (assimilatory)
Pden_4462	PWY-5675	nitrate reduction V (assimilatory)
Pden_4462	PWY-6549	L-glutamine biosynthesis III
Pden_4462	PWY-6963	ammonia assimilation cycle I
Pden_4462	PWY-6964	ammonia assimilation cycle II
Pden_4463	PWY-6123	inosine-5'-phosphate biosynthesis I
Pden_4463	PWY-6124	inosine-5'-phosphate biosynthesis II
Pden_4463	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Pden_4463	PWY-7234	inosine-5'-phosphate biosynthesis III
Pden_4465	PWY-1042	glycolysis IV (plant cytosol)
Pden_4465	PWY-5484	glycolysis II (from fructose 6-phosphate)
Pden_4465	PWY-6901	superpathway of glucose and xylose degradation
Pden_4465	PWY-7003	glycerol degradation to butanol
Pden_4467	PWY-5686	UMP biosynthesis
Pden_4468	PWY-5686	UMP biosynthesis
Pden_4479	PWY-5642	2,4-dinitrotoluene degradation
Pden_4479	PWY-6373	acrylate degradation
Pden_4490	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4490	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4491	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4491	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4494	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Pden_4494	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Pden_4495	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Pden_4495	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Pden_4495	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Pden_4495	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Pden_4511	PWY-5839	menaquinol-7 biosynthesis
Pden_4511	PWY-5844	menaquinol-9 biosynthesis
Pden_4511	PWY-5849	menaquinol-6 biosynthesis
Pden_4511	PWY-5890	menaquinol-10 biosynthesis
Pden_4511	PWY-5891	menaquinol-11 biosynthesis
Pden_4511	PWY-5892	menaquinol-12 biosynthesis
Pden_4511	PWY-5895	menaquinol-13 biosynthesis
