LOCUS       NC_016606               2450 bp    DNA     circular CON 08-JUN-2013
DEFINITION  Pediococcus claussenii ATCC BAA-344 plasmid pPECL-2, complete
            sequence.
ACCESSION   NC_016606
VERSION     NC_016606.1  GI:381184514
DBLINK      Project: 81103
            BioProject: PRJNA81103
KEYWORDS    .
SOURCE      Pediococcus claussenii ATCC BAA-344
  ORGANISM  Pediococcus claussenii ATCC BAA-344
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Pediococcus.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K.,
            Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J.,
            Kusalik,A. and Ziola,B.
  TITLE     Genome and plasmid sequences for the beer-spoilage organism
            Pediococcus claussenii ATCC BAA-344T
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2450)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2450)
  AUTHORS   Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K.,
            Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J.,
            Kusalik,A. and Ziola,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2011) Pathology & Laboratory Medicine, University
            of Saskatchewan, Room 2841 Royal University Hospital, 103 Hospital
            Dr, Saskatoon, Saskatchewan S7N 0W8, Canada
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CP003139.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Pediococcus claussenii ATCC BAA-344"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-344"
                     /culture_collection="ATCC:BAA-344"
                     /db_xref="taxon:701521"
                     /plasmid="pPECL-2"
     gene            96..1049
                     /locus_tag="PECL_2011"
                     /db_xref="GeneID:11537796"
     CDS             96..1049
                     /locus_tag="PECL_2011"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication protein"
                     /protein_id="YP_005005755.1"
                     /db_xref="GI:381184515"
                     /db_xref="GeneID:11537796"
                     /translation="MSKVFKDVTTNGKVRPWRERKIENVRYAEYLSILEFKRAHDVRG
                     CGEILRFRKIGEHLKLYQTWFCKKRLCPLCNWRKSMKNSSQLKQIIAEAVVREPKGRF
                     LFLTLTVKNAYSAEELKSSLRALTKAFGKLSRYKKVSKNLLGYLRSTEITVNEHDGSY
                     NQHLHVLLFVRSSYFKSSDSYINQEEWTRLWQKALKVDYEPVVHVQVVKANKRKGTDS
                     LQASAEETAKYEVKSADYMTVDDERNLVVIKNLEYALAGTRQISYGGLFKQIKQDLKL
                     EDVENGDLIHVGDEDYTKEQMEAAEEVVAKWDFKKQNYFIW"
     misc_feature    333..1043
                     /locus_tag="PECL_2011"
                     /note="Replication protein; Region: Rep_1; pfam01446"
                     /db_xref="CDD:216507"
     gene            1914..2186
                     /locus_tag="PECL_2012"
                     /db_xref="GeneID:11537795"
     CDS             1914..2186
                     /locus_tag="PECL_2012"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix family protein"
                     /protein_id="YP_005005756.1"
                     /db_xref="GI:381184516"
                     /db_xref="GeneID:11537795"
                     /translation="MPRIDERSWKKIFELGNNGKYDDEAYAEILATVLNLRVEKGLTQ
                     SDVARISGLSTSMISKIESQYTVPSVKNFLRYIFALDLDWELVHKR"
     misc_feature    2016..>2168
                     /locus_tag="PECL_2012"
                     /note="Predicted transcriptional regulators
                     [Transcription]; Region: HipB; COG1396"
                     /db_xref="CDD:224314"
     misc_feature    2019..2168
                     /locus_tag="PECL_2012"
                     /note="Helix-turn-helix XRE-family like proteins.
                     Prokaryotic DNA binding proteins belonging to the
                     xenobiotic response element family of transcriptional
                     regulators; Region: HTH_XRE; cd00093"
                     /db_xref="CDD:238045"
     misc_feature    order(2022..2024,2097..2099)
                     /locus_tag="PECL_2012"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238045"
     misc_feature    order(2025..2027,2100..2102)
                     /locus_tag="PECL_2012"
                     /note="non-specific DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238045"
     misc_feature    order(2043..2048,2079..2081,2088..2090,2100..2105)
                     /locus_tag="PECL_2012"
                     /note="sequence-specific DNA binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238045"
ORIGIN      
        1 tattctaggg ggtaaaccct atgatgtcaa ggctgtaaac ttagctaaaa tgataattca
       61 gctccttcac gtggataaaa cgggaggagc tttttatgtc taaagtgttt aaagacgtta
      121 caacaaatgg aaaagtaaga ccttggcgag agcgcaaaat tgaaaatgta cgctatgcag
      181 aatatttgtc gattttagaa tttaagcggg cgcatgatgt ccgaggctgt ggtgaaattt
      241 tacgttttcg gaagattggg gagcatttaa aactgtatca gacttggttt tgcaaaaagc
      301 ggttgtgtcc gttatgcaat tggagaaaga gtatgaaaaa ttcgagccaa ttaaaacaaa
      361 ttattgcaga ggcagttgtg agagagccta aaggacggtt tttgttttta actttgaccg
      421 ttaagaatgc ttattcagca gaagagttaa aatcctcgtt gagagctttg actaaggctt
      481 ttggcaagtt atcgcgttat aaaaaagtat caaagaactt actaggttac ttacgctcaa
      541 cggaaattac agtgaacgaa catgacggct catataatca acatttgcat gtcttgctgt
      601 ttgtaaggtc tagctatttc aagtcgagtg acagttatat taatcaagaa gaatggacaa
      661 gactgtggca aaaggcgtta aaagtcgatt atgagccagt ggtgcatgtg caagtcgtta
      721 aggcaaataa acgaaaaggg acggattctt tacaagctag tgcggaagaa acggctaagt
      781 atgaagtaaa atcggctgat tatatgacgg ttgatgatga gcgtaatttg gtggtgatta
      841 aaaatttgga gtatgcctta gctggaacac gacaaatcag ctatggtggt ctgtttaagc
      901 aaattaagca agacttgaaa ctggaagatg ttgaaaatgg tgatttaatt catgttggcg
      961 atgaagatta caccaaagag caaatggaag ctgcggaaga agtcgttgca aagtgggact
     1021 ttaaaaagca aaattatttt atttggtaaa gagaatgtca gggtatgatc aacggcaaaa
     1081 ccgttgggca tacccttatt ttttgttgcc agcttgctga cttctgatac agtttttttg
     1141 gttttagcac tactccaatt tatttggagt gtaagtgcgc cttgaactaa tgttttgaat
     1201 tttgtcattg tcgaaatata agacaatggc gcacttacac gtcactttca tgacgtcgtg
     1261 cgttctgact gcaaaacgtc agaagggcgc acttgcaccc caccaaataa atggggtgca
     1321 agttgcttaa aacctgtctc agaattcgct ccgctcaaac taaaactgac aagtcagttt
     1381 ggaacccaaa aagcagataa gttcagtcgt aaactccttc gaacttttct cctttttgag
     1441 ttgctctcag aagcccaaaa ttgccttcta agccatttta agaattaaca agttatttaa
     1501 ctgtctgtca acgttaaatc gacgtagata gccttattga gccgtacagg cgaaattaga
     1561 ctatctagga ggctttaagg agttgataga ctttgcaaat taaaagctaa aaggcggaaa
     1621 gcagcttgcc tgttttcccg agcccgactg gcggcgaagt cgaaacggtc aagctggttc
     1681 agcttgtcag gtttgggtga aacccaaggt cttacttttt cggtcgttaa aactggaaaa
     1741 tttcataaaa tttttggtgg gtctctctaa ctagcccgct acccgttcga gagtatttgc
     1801 gggcgcgaat tcgcccttct acccgttcga aatcgaacct tttgcttttt tattgtgaac
     1861 aaaaatgtgg taatgttcta gagttttaga aagagattta aaggggatta ataatgccga
     1921 gaattgacga acgtagttgg aaaaagattt ttgaattggg taataacggt aaatacgatg
     1981 atgaagcgta tgctgagatt cttgctacag tattgaattt gcgtgttgaa aaaggcttaa
     2041 ctcaaagtga cgttgcgaga atatctggtt tatctacgag tatgatctct aaaattgaga
     2101 gtcaatatac agtaccgagt gtaaaaaatt tcttacgata tattttcgcc ttagatttgg
     2161 attgggaact tgttcataaa cgttaactga attttgggtt taaaaaagag gttcagtatg
     2221 aacctctttt ttggggtttt gaaagtgacg ttttttgtca ctttcctctt atcttgatac
     2281 agtagaatca attcgttttt ttgtttttca tttaaagcct tgacatggcg gggtttaggc
     2341 gtaaaattag cctcataaat ggttgaatga aaacaaaata aaaaacccac gtgaaatctc
     2401 tgtttggcga ccgagcacgt gagttgatta tcatttgcga tttatagcct
//
