Phep_0012	PWY-5316	nicotine biosynthesis
Phep_0012	PWY-7342	superpathway of nicotine biosynthesis
Phep_0013	PWY-5316	nicotine biosynthesis
Phep_0013	PWY-7342	superpathway of nicotine biosynthesis
Phep_0014	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Phep_0014	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Phep_0014	PWY-6896	thiamin salvage I
Phep_0014	PWY-6897	thiamin salvage II
Phep_0025	PWY-5663	tetrahydrobiopterin biosynthesis I
Phep_0025	PWY-5664	tetrahydrobiopterin biosynthesis II
Phep_0025	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Phep_0025	PWY-6703	preQ<sub>0</sub> biosynthesis
Phep_0025	PWY-6983	tetrahydrobiopterin biosynthesis III
Phep_0025	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Phep_0028	PWY-4381	fatty acid biosynthesis initiation I
Phep_0032	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Phep_0032	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Phep_0033	PWY-1042	glycolysis IV (plant cytosol)
Phep_0033	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_0033	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_0033	PWY-7385	1,3-propanediol biosynthesis (engineered)
Phep_0037	PWY-6829	tRNA methylation (yeast)
Phep_0037	PWY-7285	methylwyosine biosynthesis
Phep_0037	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Phep_0043	PWY-5669	phosphatidylethanolamine biosynthesis I
Phep_0044	PWY-6599	guanine and guanosine salvage II
Phep_0044	PWY-6609	adenine and adenosine salvage III
Phep_0044	PWY-6610	adenine and adenosine salvage IV
Phep_0044	PWY-6620	guanine and guanosine salvage
Phep_0078	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_0078	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_0084	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_0114	PWY-6906	chitin derivatives degradation
Phep_0114	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Phep_0114	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Phep_0119	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Phep_0119	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Phep_0119	PWY-6897	thiamin salvage II
Phep_0119	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Phep_0119	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Phep_0119	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Phep_0119	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Phep_0124	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_0124	PWY-5686	UMP biosynthesis
Phep_0124	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_0131	PWY-6749	CMP-legionaminate biosynthesis I
Phep_0133	PWY-622	starch biosynthesis
Phep_0135	PWY-5155	&beta;-alanine biosynthesis III
Phep_0160	PWY-5392	reductive TCA cycle II
Phep_0160	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_0160	PWY-5690	TCA cycle II (plants and fungi)
Phep_0160	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_0160	PWY-6728	methylaspartate cycle
Phep_0160	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0160	PWY-7254	TCA cycle VII (acetate-producers)
Phep_0160	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_0208	PWY-2941	L-lysine biosynthesis II
Phep_0208	PWY-5097	L-lysine biosynthesis VI
Phep_0211	PWY-3781	aerobic respiration I (cytochrome c)
Phep_0211	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Phep_0211	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_0211	PWY-5690	TCA cycle II (plants and fungi)
Phep_0211	PWY-6728	methylaspartate cycle
Phep_0211	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0211	PWY-7254	TCA cycle VII (acetate-producers)
Phep_0211	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_0212	PWY-3781	aerobic respiration I (cytochrome c)
Phep_0212	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Phep_0212	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_0212	PWY-5690	TCA cycle II (plants and fungi)
Phep_0212	PWY-6728	methylaspartate cycle
Phep_0212	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0212	PWY-7254	TCA cycle VII (acetate-producers)
Phep_0212	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_0223	PWY-4381	fatty acid biosynthesis initiation I
Phep_0227	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0228	PWY-6012	acyl carrier protein metabolism I
Phep_0228	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Phep_0229	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Phep_0229	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Phep_0259	PWY-5057	L-valine degradation II
Phep_0259	PWY-5076	L-leucine degradation III
Phep_0259	PWY-5078	L-isoleucine degradation II
Phep_0259	PWY-5101	L-isoleucine biosynthesis II
Phep_0259	PWY-5103	L-isoleucine biosynthesis III
Phep_0259	PWY-5104	L-isoleucine biosynthesis IV
Phep_0259	PWY-5108	L-isoleucine biosynthesis V
Phep_0267	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Phep_0267	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Phep_0267	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Phep_0280	PWY-3801	sucrose degradation II (sucrose synthase)
Phep_0280	PWY-5054	sorbitol biosynthesis I
Phep_0280	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Phep_0280	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_0280	PWY-5659	GDP-mannose biosynthesis
Phep_0280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_0280	PWY-621	sucrose degradation III (sucrose invertase)
Phep_0280	PWY-622	starch biosynthesis
Phep_0280	PWY-6531	mannitol cycle
Phep_0280	PWY-6981	chitin biosynthesis
Phep_0280	PWY-7238	sucrose biosynthesis II
Phep_0280	PWY-7347	sucrose biosynthesis III
Phep_0280	PWY-7385	1,3-propanediol biosynthesis (engineered)
Phep_0295	PWY-3781	aerobic respiration I (cytochrome c)
Phep_0295	PWY-4521	arsenite oxidation I (respiratory)
Phep_0295	PWY-6692	Fe(II) oxidation
Phep_0295	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_0353	PWY-6483	ceramide degradation
Phep_0353	PWY-7119	sphingolipid recycling and degradation (yeast)
Phep_0355	PWY-6483	ceramide degradation
Phep_0355	PWY-7119	sphingolipid recycling and degradation (yeast)
Phep_0360	PWY-6906	chitin derivatives degradation
Phep_0360	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Phep_0360	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Phep_0375	PWY-6527	stachyose degradation
Phep_0382	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_0382	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Phep_0396	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_0411	PWY-5381	pyridine nucleotide cycling (plants)
Phep_0411	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Phep_0415	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Phep_0422	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Phep_0428	PWY-6164	3-dehydroquinate biosynthesis I
Phep_0434	PWY-6902	chitin degradation II
Phep_0460	PWY-7039	phosphatidate metabolism, as a signaling molecule
Phep_0475	PWY-7158	L-phenylalanine degradation V
Phep_0492	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Phep_0513	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Phep_0513	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Phep_0513	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Phep_0522	PWY-2941	L-lysine biosynthesis II
Phep_0522	PWY-2942	L-lysine biosynthesis III
Phep_0522	PWY-5097	L-lysine biosynthesis VI
Phep_0527	PWY-6167	flavin biosynthesis II (archaea)
Phep_0527	PWY-6168	flavin biosynthesis III (fungi)
Phep_0538	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Phep_0538	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Phep_0538	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0538	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0538	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Phep_0538	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Phep_0538	PWY-7205	CMP phosphorylation
Phep_0538	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Phep_0538	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0538	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Phep_0538	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0538	PWY-7224	purine deoxyribonucleosides salvage
Phep_0538	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0538	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Phep_0569	PWY-4261	glycerol degradation I
Phep_0569	PWY-6118	glycerol-3-phosphate shuttle
Phep_0569	PWY-6952	glycerophosphodiester degradation
Phep_0580	PWY-4381	fatty acid biosynthesis initiation I
Phep_0580	PWY-5743	3-hydroxypropanoate cycle
Phep_0580	PWY-5744	glyoxylate assimilation
Phep_0580	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_0580	PWY-6679	jadomycin biosynthesis
Phep_0580	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_0639	PWY-4381	fatty acid biosynthesis initiation I
Phep_0639	PWY-5743	3-hydroxypropanoate cycle
Phep_0639	PWY-5744	glyoxylate assimilation
Phep_0639	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_0639	PWY-6679	jadomycin biosynthesis
Phep_0639	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_0643	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Phep_0643	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_0643	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Phep_0643	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Phep_0644	PWY-6853	ethylene biosynthesis II (microbes)
Phep_0646	PWY-4202	arsenate detoxification I (glutaredoxin)
Phep_0646	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Phep_0646	PWY-6608	guanosine nucleotides degradation III
Phep_0646	PWY-6609	adenine and adenosine salvage III
Phep_0646	PWY-6611	adenine and adenosine salvage V
Phep_0646	PWY-6620	guanine and guanosine salvage
Phep_0646	PWY-6627	salinosporamide A biosynthesis
Phep_0646	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Phep_0646	PWY-7179	purine deoxyribonucleosides degradation I
Phep_0646	PWY-7179-1	purine deoxyribonucleosides degradation
Phep_0657	PWY-3121	linamarin degradation
Phep_0657	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Phep_0657	PWY-6002	lotaustralin degradation
Phep_0657	PWY-6788	cellulose degradation II (fungi)
Phep_0657	PWY-7089	taxiphyllin bioactivation
Phep_0657	PWY-7091	linustatin bioactivation
Phep_0657	PWY-7092	neolinustatin bioactivation
Phep_0664	PWY-5667	CDP-diacylglycerol biosynthesis I
Phep_0664	PWY-5981	CDP-diacylglycerol biosynthesis III
Phep_0675	PWY-6788	cellulose degradation II (fungi)
Phep_0686	PWY-5392	reductive TCA cycle II
Phep_0686	PWY-5537	pyruvate fermentation to acetate V
Phep_0686	PWY-5538	pyruvate fermentation to acetate VI
Phep_0686	PWY-5690	TCA cycle II (plants and fungi)
Phep_0686	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_0686	PWY-6728	methylaspartate cycle
Phep_0686	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0686	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_0690	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Phep_0690	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0690	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Phep_0690	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Phep_0690	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0690	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0690	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0690	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Phep_0691	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Phep_0691	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0691	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Phep_0691	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Phep_0691	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0691	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_0691	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_0691	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Phep_0694	PWY-43	putrescine biosynthesis II
Phep_0695	PWY-5367	petroselinate biosynthesis
Phep_0695	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Phep_0695	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Phep_0695	PWY-5989	stearate biosynthesis II (bacteria and plants)
Phep_0695	PWY-5994	palmitate biosynthesis I (animals and fungi)
Phep_0695	PWY-6113	superpathway of mycolate biosynthesis
Phep_0695	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Phep_0695	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Phep_0695	PWY-6951	Phep_0695
Phep_0695	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Phep_0695	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_0695	PWYG-321	mycolate biosynthesis
Phep_0701	PWY-1042	glycolysis IV (plant cytosol)
Phep_0701	PWY-1622	formaldehyde assimilation I (serine pathway)
Phep_0701	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Phep_0701	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_0701	PWY-5723	Rubisco shunt
Phep_0701	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_0701	PWY-6886	1-butanol autotrophic biosynthesis
Phep_0701	PWY-6901	superpathway of glucose and xylose degradation
Phep_0701	PWY-7003	glycerol degradation to butanol
Phep_0701	PWY-7124	ethylene biosynthesis V (engineered)
Phep_0701	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Phep_0705	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_0705	PWY-5686	UMP biosynthesis
Phep_0705	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_0706	PWY-6654	phosphopantothenate biosynthesis III
Phep_0715	PWY-6527	stachyose degradation
Phep_0734	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_0734	PWY-6549	L-glutamine biosynthesis III
Phep_0734	PWY-6728	methylaspartate cycle
Phep_0734	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0734	PWY-7124	ethylene biosynthesis V (engineered)
Phep_0734	PWY-7254	TCA cycle VII (acetate-producers)
Phep_0734	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_0774	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_0774	PWY-6855	chitin degradation I (archaea)
Phep_0774	PWY-6906	chitin derivatives degradation
Phep_0778	PWY-6906	chitin derivatives degradation
Phep_0778	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Phep_0778	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Phep_0802	PWY-7199	pyrimidine deoxyribonucleosides salvage
Phep_0809	PWY-6123	inosine-5'-phosphate biosynthesis I
Phep_0809	PWY-6124	inosine-5'-phosphate biosynthesis II
Phep_0809	PWY-7234	inosine-5'-phosphate biosynthesis III
Phep_0810	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Phep_0810	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Phep_0814	PWY-6854	ethylene biosynthesis III (microbes)
Phep_0836	PWY-6605	adenine and adenosine salvage II
Phep_0836	PWY-6610	adenine and adenosine salvage IV
Phep_0852	PWY-2781	<i>cis</i>-zeatin biosynthesis
Phep_0864	PWY-1622	formaldehyde assimilation I (serine pathway)
Phep_0864	PWY-5392	reductive TCA cycle II
Phep_0864	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_0864	PWY-5690	TCA cycle II (plants and fungi)
Phep_0864	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_0864	PWY-6728	methylaspartate cycle
Phep_0864	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_0864	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Phep_0864	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Phep_0874	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_0874	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_0874	PWY-7560	methylerythritol phosphate pathway II
Phep_0977	PWY-5839	menaquinol-7 biosynthesis
Phep_0977	PWY-5844	menaquinol-9 biosynthesis
Phep_0977	PWY-5849	menaquinol-6 biosynthesis
Phep_0977	PWY-5890	menaquinol-10 biosynthesis
Phep_0977	PWY-5891	menaquinol-11 biosynthesis
Phep_0977	PWY-5892	menaquinol-12 biosynthesis
Phep_0977	PWY-5895	menaquinol-13 biosynthesis
Phep_0983	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Phep_0983	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_0983	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Phep_0989	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_0989	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_0992	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Phep_0993	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Phep_1017	PWY-6986	alginate degradation
Phep_1138	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Phep_1138	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Phep_1138	PWY-5989	stearate biosynthesis II (bacteria and plants)
Phep_1138	PWY-6113	superpathway of mycolate biosynthesis
Phep_1138	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Phep_1138	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Phep_1138	PWY-7096	triclosan resistance
Phep_1138	PWYG-321	mycolate biosynthesis
Phep_1149	PWY-1081	homogalacturonan degradation
Phep_1149	PWY-7246	pectin degradation II
Phep_1149	PWY-7248	pectin degradation III
Phep_1157	PWY-1081	homogalacturonan degradation
Phep_1157	PWY-7246	pectin degradation II
Phep_1157	PWY-7248	pectin degradation III
Phep_1162	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Phep_1162	PWY-7248	pectin degradation III
Phep_1163	PWY-5147	oleate biosynthesis I (plants)
Phep_1164	PWY-5743	3-hydroxypropanoate cycle
Phep_1164	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_1164	PWY-6728	methylaspartate cycle
Phep_1164	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_1165	PWY-5491	diethylphosphate degradation
Phep_1166	PWY-2161	folate polyglutamylation
Phep_1173	PWY-5686	UMP biosynthesis
Phep_1175	PWY-6902	chitin degradation II
Phep_1190	PWY-7205	CMP phosphorylation
Phep_1196	PWY-1042	glycolysis IV (plant cytosol)
Phep_1196	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Phep_1196	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_1196	PWY-5723	Rubisco shunt
Phep_1196	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_1196	PWY-6886	1-butanol autotrophic biosynthesis
Phep_1196	PWY-6901	superpathway of glucose and xylose degradation
Phep_1196	PWY-7003	glycerol degradation to butanol
Phep_1196	PWY-7124	ethylene biosynthesis V (engineered)
Phep_1196	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Phep_1198	PWY-5316	nicotine biosynthesis
Phep_1198	PWY-5381	pyridine nucleotide cycling (plants)
Phep_1198	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Phep_1198	PWY-7342	superpathway of nicotine biosynthesis
Phep_1201	PWY-5958	acridone alkaloid biosynthesis
Phep_1201	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Phep_1201	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Phep_1202	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_1211	PWY-5298	L-lysine degradation VI
Phep_1263	PWY-842	starch degradation I
Phep_1266	PWY-5686	UMP biosynthesis
Phep_1292	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_1294	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_1314	PWY-7242	D-fructuronate degradation
Phep_1335	PWY-5028	L-histidine degradation II
Phep_1335	PWY-5030	L-histidine degradation III
Phep_1336	PWY-5028	L-histidine degradation II
Phep_1336	PWY-5030	L-histidine degradation III
Phep_1357	PWY-5491	diethylphosphate degradation
Phep_1388	PWY-6902	chitin degradation II
Phep_1412	PWY-6749	CMP-legionaminate biosynthesis I
Phep_1413	PWY-6823	molybdenum cofactor biosynthesis
Phep_1413	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_1413	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_1413	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Phep_1414	PWY-4381	fatty acid biosynthesis initiation I
Phep_1414	PWY-5743	3-hydroxypropanoate cycle
Phep_1414	PWY-5744	glyoxylate assimilation
Phep_1414	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_1414	PWY-6679	jadomycin biosynthesis
Phep_1414	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_1415	PWY-1042	glycolysis IV (plant cytosol)
Phep_1415	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_1415	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_1415	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_1415	PWY-7385	1,3-propanediol biosynthesis (engineered)
Phep_1421	PWY-3841	folate transformations II
Phep_1421	PWY-6614	tetrahydrofolate biosynthesis
Phep_1422	PWY-3841	folate transformations II
Phep_1422	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_1422	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_1422	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Phep_1422	PWY-7199	pyrimidine deoxyribonucleosides salvage
Phep_1422	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Phep_1424	PWY-7560	methylerythritol phosphate pathway II
Phep_1430	PWY-6700	queuosine biosynthesis
Phep_1435	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_1435	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_1463	PWY-5686	UMP biosynthesis
Phep_1510	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Phep_1511	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Phep_1512	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Phep_1512	PWY-3461	L-tyrosine biosynthesis II
Phep_1512	PWY-3462	L-phenylalanine biosynthesis II
Phep_1512	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Phep_1512	PWY-6120	L-tyrosine biosynthesis III
Phep_1512	PWY-6627	salinosporamide A biosynthesis
Phep_1513	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Phep_1514	PWY-6164	3-dehydroquinate biosynthesis I
Phep_1516	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Phep_1516	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Phep_1537	PWY-621	sucrose degradation III (sucrose invertase)
Phep_1563	PWY-6823	molybdenum cofactor biosynthesis
Phep_1563	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_1563	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_1563	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Phep_1564	PWY-5743	3-hydroxypropanoate cycle
Phep_1564	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_1564	PWY-6728	methylaspartate cycle
Phep_1564	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_1568	PWY-1042	glycolysis IV (plant cytosol)
Phep_1568	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_1568	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_1568	PWY-7003	glycerol degradation to butanol
Phep_1588	PWY-5198	factor 420 biosynthesis
Phep_1594	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Phep_1594	PWY-6596	adenosine nucleotides degradation I
Phep_1594	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Phep_1605	PWY-4261	glycerol degradation I
Phep_1612	PWY-4381	fatty acid biosynthesis initiation I
Phep_1612	PWY-5743	3-hydroxypropanoate cycle
Phep_1612	PWY-5744	glyoxylate assimilation
Phep_1612	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_1612	PWY-6679	jadomycin biosynthesis
Phep_1612	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_1614	PWY-6902	chitin degradation II
Phep_1638	PWY-6012	acyl carrier protein metabolism I
Phep_1638	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Phep_1641	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Phep_1641	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Phep_1641	PWY-5989	stearate biosynthesis II (bacteria and plants)
Phep_1641	PWY-5994	palmitate biosynthesis I (animals and fungi)
Phep_1641	PWY-6113	superpathway of mycolate biosynthesis
Phep_1641	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Phep_1641	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Phep_1641	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_1641	PWYG-321	mycolate biosynthesis
Phep_1674	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_1674	PWY-6855	chitin degradation I (archaea)
Phep_1674	PWY-6906	chitin derivatives degradation
Phep_1675	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_1698	PWY-6906	chitin derivatives degradation
Phep_1698	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Phep_1698	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Phep_1699	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_1699	PWY-6855	chitin degradation I (archaea)
Phep_1699	PWY-6906	chitin derivatives degradation
Phep_1706	PWY-6527	stachyose degradation
Phep_1816	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_1839	PWY-6527	stachyose degradation
Phep_1847	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_1847	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_1855	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_1855	PWY-5723	Rubisco shunt
Phep_1864	PWY-6123	inosine-5'-phosphate biosynthesis I
Phep_1864	PWY-6124	inosine-5'-phosphate biosynthesis II
Phep_1864	PWY-7234	inosine-5'-phosphate biosynthesis III
Phep_1874	PWY-5344	L-homocysteine biosynthesis
Phep_1875	PWY-5344	L-homocysteine biosynthesis
Phep_1875	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Phep_1880	PWY-5198	factor 420 biosynthesis
Phep_1880	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Phep_1880	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Phep_1882	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
Phep_1882	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Phep_1894	PWY-1361	benzoyl-CoA degradation I (aerobic)
Phep_1894	PWY-5109	2-methylbutanoate biosynthesis
Phep_1894	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Phep_1894	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Phep_1894	PWY-5177	glutaryl-CoA degradation
Phep_1894	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_1894	PWY-6435	4-hydroxybenzoate biosynthesis V
Phep_1894	PWY-6583	pyruvate fermentation to butanol I
Phep_1894	PWY-6863	pyruvate fermentation to hexanol
Phep_1894	PWY-6883	pyruvate fermentation to butanol II
Phep_1894	PWY-6944	androstenedione degradation
Phep_1894	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Phep_1894	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Phep_1894	PWY-7007	methyl ketone biosynthesis
Phep_1894	PWY-7046	4-coumarate degradation (anaerobic)
Phep_1894	PWY-7094	fatty acid salvage
Phep_1894	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Phep_1894	PWY-735	jasmonic acid biosynthesis
Phep_1894	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Phep_1895	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Phep_1895	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Phep_1897	PWY-6123	inosine-5'-phosphate biosynthesis I
Phep_1897	PWY-7234	inosine-5'-phosphate biosynthesis III
Phep_1910	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Phep_1954	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_1966	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Phep_2032	PWY-6012	acyl carrier protein metabolism I
Phep_2032	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Phep_2046	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_2050	PWY-2781	<i>cis</i>-zeatin biosynthesis
Phep_2065	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Phep_2065	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Phep_2067	PWY-6703	preQ<sub>0</sub> biosynthesis
Phep_2069	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Phep_2069	PWY-2201	folate transformations I
Phep_2069	PWY-3841	folate transformations II
Phep_2069	PWY-5030	L-histidine degradation III
Phep_2069	PWY-5497	purine nucleobases degradation II (anaerobic)
Phep_2069	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Phep_2088	PWY-5943	&beta;-carotene biosynthesis
Phep_2088	PWY-5947	lutein biosynthesis
Phep_2095	PWY-5381	pyridine nucleotide cycling (plants)
Phep_2105	PWY-5941	glycogen degradation II (eukaryotic)
Phep_2105	PWY-622	starch biosynthesis
Phep_2105	PWY-6731	starch degradation III
Phep_2105	PWY-6737	starch degradation V
Phep_2105	PWY-7238	sucrose biosynthesis II
Phep_2130	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_2130	PWY-5723	Rubisco shunt
Phep_2134	PWY-3821	galactose degradation III
Phep_2134	PWY-6317	galactose degradation I (Leloir pathway)
Phep_2134	PWY-6527	stachyose degradation
Phep_2135	PWY-2723	trehalose degradation V
Phep_2135	PWY-6317	galactose degradation I (Leloir pathway)
Phep_2135	PWY-6737	starch degradation V
Phep_2162	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Phep_2162	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Phep_2168	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Phep_2174	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Phep_2174	PWY-6416	quinate degradation II
Phep_2174	PWY-6707	gallate biosynthesis
Phep_2262	PWY-7242	D-fructuronate degradation
Phep_2265	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Phep_2265	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Phep_2265	PWY-7242	D-fructuronate degradation
Phep_2265	PWY-7310	D-glucosaminate degradation
Phep_2276	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
Phep_2276	PWY-6174	mevalonate pathway II (archaea)
Phep_2276	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
Phep_2276	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
Phep_2276	PWY-7102	bisabolene biosynthesis
Phep_2276	PWY-7391	isoprene biosynthesis II (engineered)
Phep_2276	PWY-7524	mevalonate pathway III (archaea)
Phep_2276	PWY-7560	methylerythritol phosphate pathway II
Phep_2276	PWY-922	mevalonate pathway I
Phep_2279	PWY-6902	chitin degradation II
Phep_2314	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Phep_2314	PWY-5530	sorbitol biosynthesis II
Phep_2314	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Phep_2315	PWY-5101	L-isoleucine biosynthesis II
Phep_2315	PWY-5103	L-isoleucine biosynthesis III
Phep_2315	PWY-5104	L-isoleucine biosynthesis IV
Phep_2315	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Phep_2328	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Phep_2328	PWY-6148	tetrahydromethanopterin biosynthesis
Phep_2328	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Phep_2328	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Phep_2332	PWY-2941	L-lysine biosynthesis II
Phep_2332	PWY-2942	L-lysine biosynthesis III
Phep_2332	PWY-5097	L-lysine biosynthesis VI
Phep_2333	PWY-2941	L-lysine biosynthesis II
Phep_2333	PWY-2942	L-lysine biosynthesis III
Phep_2333	PWY-5097	L-lysine biosynthesis VI
Phep_2333	PWY-6559	spermidine biosynthesis II
Phep_2333	PWY-6562	norspermidine biosynthesis
Phep_2333	PWY-7153	grixazone biosynthesis
Phep_2334	PWY-6749	CMP-legionaminate biosynthesis I
Phep_2341	PWY-7254	TCA cycle VII (acetate-producers)
Phep_2362	PWY-6936	seleno-amino acid biosynthesis
Phep_2381	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_2381	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_2381	PWY-7560	methylerythritol phosphate pathway II
Phep_2417	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_2417	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_2434	PWY-7533	gliotoxin biosynthesis
Phep_2466	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Phep_2467	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Phep_2467	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Phep_2467	PWY-6897	thiamin salvage II
Phep_2467	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Phep_2467	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Phep_2467	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Phep_2467	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Phep_2469	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Phep_2469	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Phep_2469	PWY-6897	thiamin salvage II
Phep_2469	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Phep_2469	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Phep_2469	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Phep_2469	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Phep_2470	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_2470	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_2471	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_2471	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Phep_2475	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Phep_2484	PWY-3781	aerobic respiration I (cytochrome c)
Phep_2484	PWY-4521	arsenite oxidation I (respiratory)
Phep_2484	PWY-6692	Fe(II) oxidation
Phep_2484	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_2502	PWY-4381	fatty acid biosynthesis initiation I
Phep_2509	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Phep_2509	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Phep_2572	PWY-6700	queuosine biosynthesis
Phep_2573	PWY-7560	methylerythritol phosphate pathway II
Phep_2576	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Phep_2576	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Phep_2576	PWY-6268	adenosylcobalamin salvage from cobalamin
Phep_2576	PWY-6269	adenosylcobalamin salvage from cobinamide II
Phep_2582	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Phep_2582	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Phep_2586	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Phep_2586	PWY-7177	UTP and CTP dephosphorylation II
Phep_2586	PWY-7185	UTP and CTP dephosphorylation I
Phep_2608	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Phep_2638	PWY-6902	chitin degradation II
Phep_2696	PWY-6986	alginate degradation
Phep_2700	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_2717	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_2718	PWY-6902	chitin degradation II
Phep_2727	PWY-2723	trehalose degradation V
Phep_2727	PWY-6317	galactose degradation I (Leloir pathway)
Phep_2727	PWY-6737	starch degradation V
Phep_2729	PWY-4261	glycerol degradation I
Phep_2745	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_2745	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_2747	PWY-5532	adenosine nucleotides degradation IV
Phep_2747	PWY-5723	Rubisco shunt
Phep_2757	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_2782	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_2799	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_2799	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_2799	PWY-7560	methylerythritol phosphate pathway II
Phep_2805	PWY-4261	glycerol degradation I
Phep_2816	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_2885	PWY-6527	stachyose degradation
Phep_2887	PWY-6527	stachyose degradation
Phep_2916	PWY-7193	pyrimidine ribonucleosides salvage I
Phep_2922	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Phep_2925	PWY-2941	L-lysine biosynthesis II
Phep_2925	PWY-2942	L-lysine biosynthesis III
Phep_2925	PWY-5097	L-lysine biosynthesis VI
Phep_2925	PWY-6559	spermidine biosynthesis II
Phep_2925	PWY-6562	norspermidine biosynthesis
Phep_2925	PWY-7153	grixazone biosynthesis
Phep_2933	PWY-6123	inosine-5'-phosphate biosynthesis I
Phep_2933	PWY-6124	inosine-5'-phosphate biosynthesis II
Phep_2933	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_2933	PWY-7234	inosine-5'-phosphate biosynthesis III
Phep_2935	PWY-2301	<i>myo</i>-inositol biosynthesis
Phep_2935	PWY-4702	phytate degradation I
Phep_2935	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Phep_2944	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Phep_2970	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_2973	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Phep_2973	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Phep_2973	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Phep_2977	PWY-381	nitrate reduction II (assimilatory)
Phep_2977	PWY-5675	nitrate reduction V (assimilatory)
Phep_2977	PWY-6549	L-glutamine biosynthesis III
Phep_2977	PWY-6963	ammonia assimilation cycle I
Phep_2977	PWY-6964	ammonia assimilation cycle II
Phep_3001	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Phep_3001	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Phep_3018	PWY-5392	reductive TCA cycle II
Phep_3018	PWY-5537	pyruvate fermentation to acetate V
Phep_3018	PWY-5538	pyruvate fermentation to acetate VI
Phep_3018	PWY-5690	TCA cycle II (plants and fungi)
Phep_3018	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_3018	PWY-6728	methylaspartate cycle
Phep_3018	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_3018	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_3032	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Phep_3037	PWY-6823	molybdenum cofactor biosynthesis
Phep_3037	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_3037	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_3037	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Phep_3042	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_3042	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_3069	PWY-5686	UMP biosynthesis
Phep_3070	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_3071	PWY-5669	phosphatidylethanolamine biosynthesis I
Phep_3073	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Phep_3073	PWY-6148	tetrahydromethanopterin biosynthesis
Phep_3073	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Phep_3073	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Phep_3085	PWY-622	starch biosynthesis
Phep_3086	PWY-622	starch biosynthesis
Phep_3087	PWY-5278	sulfite oxidation III
Phep_3087	PWY-5340	sulfate activation for sulfonation
Phep_3087	PWY-6683	sulfate reduction III (assimilatory)
Phep_3087	PWY-6932	selenate reduction
Phep_3088	PWY-5278	sulfite oxidation III
Phep_3088	PWY-5340	sulfate activation for sulfonation
Phep_3088	PWY-6683	sulfate reduction III (assimilatory)
Phep_3088	PWY-6932	selenate reduction
Phep_3090	PWY-5194	siroheme biosynthesis
Phep_3090	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Phep_3091	PWY-5194	siroheme biosynthesis
Phep_3091	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Phep_3092	PWY-6683	sulfate reduction III (assimilatory)
Phep_3106	PWY-6986	alginate degradation
Phep_3109	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_3109	PWY-6855	chitin degradation I (archaea)
Phep_3109	PWY-6906	chitin derivatives degradation
Phep_3112	PWY-6902	chitin degradation II
Phep_3138	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Phep_3138	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Phep_3138	PWY-6936	seleno-amino acid biosynthesis
Phep_3138	PWY-702	L-methionine biosynthesis II
Phep_3177	PWY-7560	methylerythritol phosphate pathway II
Phep_3185	PWY-5686	UMP biosynthesis
Phep_3204	PWY-282	cuticular wax biosynthesis
Phep_3213	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Phep_3213	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Phep_3229	PWY-5686	UMP biosynthesis
Phep_3250	PWY-6902	chitin degradation II
Phep_3261	PWY-5506	methanol oxidation to formaldehyde IV
Phep_3263	PWY-3781	aerobic respiration I (cytochrome c)
Phep_3263	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Phep_3263	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_3263	PWY-5690	TCA cycle II (plants and fungi)
Phep_3263	PWY-6728	methylaspartate cycle
Phep_3263	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_3263	PWY-7254	TCA cycle VII (acetate-producers)
Phep_3263	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_3264	PWY-3781	aerobic respiration I (cytochrome c)
Phep_3264	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Phep_3264	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_3264	PWY-5690	TCA cycle II (plants and fungi)
Phep_3264	PWY-6728	methylaspartate cycle
Phep_3264	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Phep_3264	PWY-7254	TCA cycle VII (acetate-producers)
Phep_3264	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Phep_3288	PWY-6167	flavin biosynthesis II (archaea)
Phep_3288	PWY-6168	flavin biosynthesis III (fungi)
Phep_3288	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_3293	PWY-1042	glycolysis IV (plant cytosol)
Phep_3293	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_3293	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3293	PWY-7385	1,3-propanediol biosynthesis (engineered)
Phep_3295	PWY-1042	glycolysis IV (plant cytosol)
Phep_3295	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3295	PWY-6901	superpathway of glucose and xylose degradation
Phep_3295	PWY-7003	glycerol degradation to butanol
Phep_3308	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Phep_3308	PWY-622	starch biosynthesis
Phep_3317	PWY-6012	acyl carrier protein metabolism I
Phep_3319	PWY-2941	L-lysine biosynthesis II
Phep_3319	PWY-2942	L-lysine biosynthesis III
Phep_3319	PWY-5097	L-lysine biosynthesis VI
Phep_3325	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_3325	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_3326	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Phep_3326	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Phep_3326	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Phep_3326	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Phep_3328	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_3328	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_3329	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Phep_3329	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Phep_3329	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Phep_3335	PWY-1042	glycolysis IV (plant cytosol)
Phep_3335	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3335	PWY-6886	1-butanol autotrophic biosynthesis
Phep_3335	PWY-6901	superpathway of glucose and xylose degradation
Phep_3335	PWY-7003	glycerol degradation to butanol
Phep_3337	PWY-1042	glycolysis IV (plant cytosol)
Phep_3337	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3337	PWY-6901	superpathway of glucose and xylose degradation
Phep_3337	PWY-7003	glycerol degradation to butanol
Phep_3343	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_3343	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_3360	PWY-5491	diethylphosphate degradation
Phep_3381	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_3399	PWY-6902	chitin degradation II
Phep_3415	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Phep_3417	PWY-5057	L-valine degradation II
Phep_3417	PWY-5076	L-leucine degradation III
Phep_3417	PWY-5078	L-isoleucine degradation II
Phep_3417	PWY-5101	L-isoleucine biosynthesis II
Phep_3417	PWY-5103	L-isoleucine biosynthesis III
Phep_3417	PWY-5104	L-isoleucine biosynthesis IV
Phep_3417	PWY-5108	L-isoleucine biosynthesis V
Phep_3418	PWY-5101	L-isoleucine biosynthesis II
Phep_3418	PWY-5103	L-isoleucine biosynthesis III
Phep_3418	PWY-5104	L-isoleucine biosynthesis IV
Phep_3418	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Phep_3419	PWY-5101	L-isoleucine biosynthesis II
Phep_3419	PWY-5103	L-isoleucine biosynthesis III
Phep_3419	PWY-5104	L-isoleucine biosynthesis IV
Phep_3419	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Phep_3419	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Phep_3419	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Phep_3419	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Phep_3420	PWY-5101	L-isoleucine biosynthesis II
Phep_3420	PWY-5103	L-isoleucine biosynthesis III
Phep_3420	PWY-5104	L-isoleucine biosynthesis IV
Phep_3420	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Phep_3420	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Phep_3420	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Phep_3420	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Phep_3422	PWY-5101	L-isoleucine biosynthesis II
Phep_3422	PWY-5103	L-isoleucine biosynthesis III
Phep_3422	PWY-5104	L-isoleucine biosynthesis IV
Phep_3422	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Phep_3424	PWY-6871	3-methylbutanol biosynthesis
Phep_3427	PWY-6871	3-methylbutanol biosynthesis
Phep_3428	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Phep_3444	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Phep_3444	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Phep_3448	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_3449	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_3449	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Phep_3450	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_3450	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Phep_3451	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_3456	PWY-7560	methylerythritol phosphate pathway II
Phep_3478	PWY-1042	glycolysis IV (plant cytosol)
Phep_3478	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Phep_3478	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3478	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_3478	PWY-7385	1,3-propanediol biosynthesis (engineered)
Phep_3485	PWY-5659	GDP-mannose biosynthesis
Phep_3485	PWY-6073	alginate biosynthesis I (algal)
Phep_3485	PWY-6082	alginate biosynthesis II (bacterial)
Phep_3485	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Phep_3500	PWY-5381	pyridine nucleotide cycling (plants)
Phep_3500	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Phep_3500	PWY-6596	adenosine nucleotides degradation I
Phep_3500	PWY-6606	guanosine nucleotides degradation II
Phep_3500	PWY-6607	guanosine nucleotides degradation I
Phep_3500	PWY-6608	guanosine nucleotides degradation III
Phep_3500	PWY-7185	UTP and CTP dephosphorylation I
Phep_3501	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Phep_3501	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_3501	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Phep_3503	PWY-4261	glycerol degradation I
Phep_3504	PWY-4261	glycerol degradation I
Phep_3515	PWY-5381	pyridine nucleotide cycling (plants)
Phep_3515	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Phep_3515	PWY-6596	adenosine nucleotides degradation I
Phep_3515	PWY-6606	guanosine nucleotides degradation II
Phep_3515	PWY-6607	guanosine nucleotides degradation I
Phep_3515	PWY-6608	guanosine nucleotides degradation III
Phep_3515	PWY-7185	UTP and CTP dephosphorylation I
Phep_3517	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Phep_3517	PWY-7118	chitin degradation to ethanol
Phep_3529	PWY-2941	L-lysine biosynthesis II
Phep_3529	PWY-2942	L-lysine biosynthesis III
Phep_3529	PWY-5097	L-lysine biosynthesis VI
Phep_3549	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Phep_3549	PWY-6167	flavin biosynthesis II (archaea)
Phep_3549	PWY-6168	flavin biosynthesis III (fungi)
Phep_3561	PWY-6167	flavin biosynthesis II (archaea)
Phep_3561	PWY-6168	flavin biosynthesis III (fungi)
Phep_3561	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Phep_3581	PWY-2941	L-lysine biosynthesis II
Phep_3581	PWY-2942	L-lysine biosynthesis III
Phep_3581	PWY-5097	L-lysine biosynthesis VI
Phep_3585	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_3607	PWY-5743	3-hydroxypropanoate cycle
Phep_3607	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_3607	PWY-6728	methylaspartate cycle
Phep_3607	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Phep_3611	PWY-3221	dTDP-L-rhamnose biosynthesis II
Phep_3611	PWY-6808	dTDP-D-forosamine biosynthesis
Phep_3611	PWY-6942	dTDP-D-desosamine biosynthesis
Phep_3611	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Phep_3611	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Phep_3611	PWY-6974	dTDP-L-olivose biosynthesis
Phep_3611	PWY-6976	dTDP-L-mycarose biosynthesis
Phep_3611	PWY-7104	dTDP-L-megosamine biosynthesis
Phep_3611	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Phep_3611	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Phep_3611	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Phep_3611	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Phep_3611	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Phep_3611	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Phep_3611	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Phep_3611	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Phep_3613	PWY-3821	galactose degradation III
Phep_3613	PWY-6317	galactose degradation I (Leloir pathway)
Phep_3613	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Phep_3613	PWY-6527	stachyose degradation
Phep_3613	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Phep_3613	PWY-7344	UDP-D-galactose biosynthesis
Phep_3615	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Phep_3618	PWY-7560	methylerythritol phosphate pathway II
Phep_3644	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Phep_3654	PWY-2941	L-lysine biosynthesis II
Phep_3654	PWY-2942	L-lysine biosynthesis III
Phep_3654	PWY-5097	L-lysine biosynthesis VI
Phep_3654	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_3654	PWY-6559	spermidine biosynthesis II
Phep_3654	PWY-6562	norspermidine biosynthesis
Phep_3654	PWY-7153	grixazone biosynthesis
Phep_3654	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_3655	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Phep_3655	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Phep_3656	PWY-6902	chitin degradation II
Phep_3659	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Phep_3663	PWY-6614	tetrahydrofolate biosynthesis
Phep_3674	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Phep_3702	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Phep_3702	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Phep_3710	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Phep_3710	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Phep_3715	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Phep_3716	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Phep_3724	PWY-1361	benzoyl-CoA degradation I (aerobic)
Phep_3724	PWY-5109	2-methylbutanoate biosynthesis
Phep_3724	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Phep_3724	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Phep_3724	PWY-5177	glutaryl-CoA degradation
Phep_3724	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Phep_3724	PWY-6435	4-hydroxybenzoate biosynthesis V
Phep_3724	PWY-6583	pyruvate fermentation to butanol I
Phep_3724	PWY-6863	pyruvate fermentation to hexanol
Phep_3724	PWY-6883	pyruvate fermentation to butanol II
Phep_3724	PWY-6944	androstenedione degradation
Phep_3724	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Phep_3724	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Phep_3724	PWY-7007	methyl ketone biosynthesis
Phep_3724	PWY-7046	4-coumarate degradation (anaerobic)
Phep_3724	PWY-7094	fatty acid salvage
Phep_3724	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Phep_3724	PWY-735	jasmonic acid biosynthesis
Phep_3724	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Phep_3731	PWY-4041	&gamma;-glutamyl cycle
Phep_3731	PWY-5826	hypoglycin biosynthesis
Phep_3797	PWY-6986	alginate degradation
Phep_3799	PWY-2201	folate transformations I
Phep_3799	PWY-3841	folate transformations II
Phep_3800	PWY-2201	folate transformations I
Phep_3800	PWY-3841	folate transformations II
Phep_3803	PWY-702	L-methionine biosynthesis II
Phep_3804	PWY-2941	L-lysine biosynthesis II
Phep_3804	PWY-2942	L-lysine biosynthesis III
Phep_3804	PWY-5097	L-lysine biosynthesis VI
Phep_3804	PWY-6559	spermidine biosynthesis II
Phep_3804	PWY-6562	norspermidine biosynthesis
Phep_3804	PWY-7153	grixazone biosynthesis
Phep_3817	PWY-4381	fatty acid biosynthesis initiation I
Phep_3833	PWY-1281	sulfoacetaldehyde degradation I
Phep_3833	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Phep_3833	PWY-5482	pyruvate fermentation to acetate II
Phep_3833	PWY-5485	pyruvate fermentation to acetate IV
Phep_3833	PWY-5497	purine nucleobases degradation II (anaerobic)
Phep_3833	PWY-6637	sulfolactate degradation II
Phep_3833	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Phep_3835	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Phep_3841	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Phep_3841	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Phep_3841	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Phep_3841	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Phep_3844	PWY-723	alkylnitronates degradation
Phep_3859	PWY-1622	formaldehyde assimilation I (serine pathway)
Phep_3859	PWY-181	photorespiration
Phep_3859	PWY-2161	folate polyglutamylation
Phep_3859	PWY-2201	folate transformations I
Phep_3859	PWY-3661	glycine betaine degradation I
Phep_3859	PWY-3661-1	glycine betaine degradation II (mammalian)
Phep_3859	PWY-3841	folate transformations II
Phep_3859	PWY-5497	purine nucleobases degradation II (anaerobic)
Phep_3860	PWY-6891	thiazole biosynthesis II (Bacillus)
Phep_3860	PWY-6892	thiazole biosynthesis I (E. coli)
Phep_3860	PWY-7560	methylerythritol phosphate pathway II
Phep_3865	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_3871	PWY-6807	xyloglucan degradation II (exoglucanase)
Phep_3910	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Phep_3910	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Phep_3910	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Phep_3915	PWY-5874	heme degradation
Phep_3915	PWY-5915	phycoerythrobilin biosynthesis I
Phep_3915	PWY-5917	phycocyanobilin biosynthesis
Phep_3915	PWY-7170	phytochromobilin biosynthesis
Phep_3925	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Phep_3941	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Phep_3941	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Phep_3941	PWY-6143	CMP-pseudaminate biosynthesis
Phep_3942	PWY-6143	CMP-pseudaminate biosynthesis
Phep_3947	PWY-6143	CMP-pseudaminate biosynthesis
Phep_3947	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
Phep_3947	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
Phep_3947	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
Phep_3959	PWY-6986	alginate degradation
Phep_3961	PWY-6986	alginate degradation
Phep_3983	PWY-7456	mannan degradation
Phep_3984	PWY-7456	mannan degradation
Phep_3999	PWY-2201	folate transformations I
Phep_3999	PWY-5497	purine nucleobases degradation II (anaerobic)
Phep_4001	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Phep_4001	PWY-5739	GDP-D-perosamine biosynthesis
Phep_4001	PWY-5740	GDP-L-colitose biosynthesis
Phep_4001	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Phep_4022	PWY-3221	dTDP-L-rhamnose biosynthesis II
Phep_4022	PWY-6808	dTDP-D-forosamine biosynthesis
Phep_4022	PWY-6942	dTDP-D-desosamine biosynthesis
Phep_4022	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Phep_4022	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Phep_4022	PWY-6974	dTDP-L-olivose biosynthesis
Phep_4022	PWY-6976	dTDP-L-mycarose biosynthesis
Phep_4022	PWY-7104	dTDP-L-megosamine biosynthesis
Phep_4022	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Phep_4022	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Phep_4022	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Phep_4022	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Phep_4022	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Phep_4022	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Phep_4022	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Phep_4022	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Phep_4029	PWY-3961	phosphopantothenate biosynthesis II
Phep_4053	PWY-6840	homoglutathione biosynthesis
Phep_4053	PWY-7255	ergothioneine biosynthesis I (bacteria)
Phep_4060	PWY-7560	methylerythritol phosphate pathway II
Phep_4091	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Phep_4091	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Phep_4093	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Phep_4093	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_4093	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Phep_4094	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Phep_4094	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Phep_4119	PWY-101	photosynthesis light reactions
Phep_4119	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Phep_4142	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Phep_4142	PWY-6855	chitin degradation I (archaea)
Phep_4142	PWY-6906	chitin derivatives degradation
Phep_4148	PWY-4381	fatty acid biosynthesis initiation I
Phep_4148	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Phep_4148	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_4149	PWY-5663	tetrahydrobiopterin biosynthesis I
Phep_4149	PWY-5664	tetrahydrobiopterin biosynthesis II
Phep_4149	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Phep_4149	PWY-6703	preQ<sub>0</sub> biosynthesis
Phep_4149	PWY-6983	tetrahydrobiopterin biosynthesis III
Phep_4149	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Phep_4151	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
Phep_4157	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Phep_4164	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Phep_4164	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Phep_4164	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Phep_4169	PWY-5958	acridone alkaloid biosynthesis
Phep_4169	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Phep_4169	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Phep_4170	PWY-5958	acridone alkaloid biosynthesis
Phep_4170	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Phep_4170	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Phep_4187	PWY-4261	glycerol degradation I
Phep_4190	PWY-1042	glycolysis IV (plant cytosol)
Phep_4190	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Phep_4190	PWY-5484	glycolysis II (from fructose 6-phosphate)
Phep_4190	PWY-5723	Rubisco shunt
Phep_4190	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_4190	PWY-6886	1-butanol autotrophic biosynthesis
Phep_4190	PWY-6901	superpathway of glucose and xylose degradation
Phep_4190	PWY-7003	glycerol degradation to butanol
Phep_4190	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Phep_4190	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Phep_4197	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Phep_4198	PWY-5381	pyridine nucleotide cycling (plants)
Phep_4198	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Phep_4202	PWY-4983	L-citrulline-nitric oxide cycle
Phep_4202	PWY-4984	urea cycle
Phep_4202	PWY-5	canavanine biosynthesis
Phep_4202	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_4202	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_4204	PWY-3341	L-proline biosynthesis III
Phep_4204	PWY-4981	L-proline biosynthesis II (from arginine)
Phep_4204	PWY-6344	L-ornithine degradation II (Stickland reaction)
Phep_4205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_4205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_4206	PWY-5686	UMP biosynthesis
Phep_4208	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_4208	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_4209	PWY-4983	L-citrulline-nitric oxide cycle
Phep_4209	PWY-4984	urea cycle
Phep_4209	PWY-5	canavanine biosynthesis
Phep_4209	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Phep_4209	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Phep_4219	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Phep_4221	PWY-6854	ethylene biosynthesis III (microbes)
Phep_4241	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_4251	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Phep_4258	PWY-6788	cellulose degradation II (fungi)
Phep_4263	PWY-1622	formaldehyde assimilation I (serine pathway)
Phep_4263	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Phep_4263	PWY-5913	TCA cycle VI (obligate autotrophs)
Phep_4263	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Phep_4263	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Phep_4263	PWY-6549	L-glutamine biosynthesis III
Phep_4263	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Phep_4263	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Phep_4263	PWY-7124	ethylene biosynthesis V (engineered)
Phep_4272	PWY-5028	L-histidine degradation II
Phep_4272	PWY-5030	L-histidine degradation III
Phep_4279	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Phep_4279	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Phep_4279	PWY-5989	stearate biosynthesis II (bacteria and plants)
Phep_4279	PWY-5994	palmitate biosynthesis I (animals and fungi)
Phep_4279	PWY-6113	superpathway of mycolate biosynthesis
Phep_4279	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Phep_4279	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Phep_4279	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Phep_4279	PWYG-321	mycolate biosynthesis
Phep_4285	PWY-6454	vancomycin resistance I
Phep_4285	PWY-6455	vancomycin resistance II
Phep_4287	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Phep_4287	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
