PERMA_0010 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_0010 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate PERMA_0012 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_0012 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_0012 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_0014 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_0014 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_0014 PWY-7185 UTP and CTP dephosphorylation I PERMA_0014 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_0014 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_0022 PWY-1042 glycolysis IV (plant cytosol) PERMA_0022 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) PERMA_0022 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_0022 PWY-5723 Rubisco shunt PERMA_0022 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_0022 PWY-6886 1-butanol autotrophic biosynthesis PERMA_0022 PWY-6901 superpathway of glucose and xylose degradation PERMA_0022 PWY-7003 glycerol degradation to butanol PERMA_0022 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) PERMA_0022 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) PERMA_0029 PWY-7221 guanosine ribonucleotides de novo biosynthesis PERMA_0038 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0039 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0043 PWY-4381 fatty acid biosynthesis initiation I PERMA_0043 PWY-5743 3-hydroxypropanoate cycle PERMA_0043 PWY-5744 glyoxylate assimilation PERMA_0043 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle PERMA_0043 PWY-6679 jadomycin biosynthesis PERMA_0043 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) PERMA_0058 PWY-2941 L-lysine biosynthesis II PERMA_0058 PWY-2942 L-lysine biosynthesis III PERMA_0058 PWY-5097 L-lysine biosynthesis VI PERMA_0061 PWY-6167 flavin biosynthesis II (archaea) PERMA_0061 PWY-6168 flavin biosynthesis III (fungi) PERMA_0068 PWY-2201 folate transformations I PERMA_0068 PWY-3841 folate transformations II PERMA_0076 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation PERMA_0077 PWY-5674 nitrate reduction IV (dissimilatory) PERMA_0081 PWY-5667 CDP-diacylglycerol biosynthesis I PERMA_0081 PWY-5981 CDP-diacylglycerol biosynthesis III PERMA_0081 PWY-7411 superpathway of phosphatidate biosynthesis (yeast) PERMA_0081 PWY-7417 phospholipid remodeling (phosphatidate, yeast) PERMA_0082 PWY-7560 methylerythritol phosphate pathway II PERMA_0090 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0090 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0095 PWY-4983 L-citrulline-nitric oxide cycle PERMA_0095 PWY-4984 urea cycle PERMA_0095 PWY-5 canavanine biosynthesis PERMA_0095 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_0095 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_0102 PWY-4041 γ-glutamyl cycle PERMA_0102 PWY-5826 hypoglycin biosynthesis PERMA_0104 PWY-6840 homoglutathione biosynthesis PERMA_0104 PWY-7255 ergothioneine biosynthesis I (bacteria) PERMA_0106 PWY-5372 carbon tetrachloride degradation II PERMA_0106 PWY-6780 hydrogen production VI PERMA_0107 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) PERMA_0116 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type PERMA_0116 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_0116 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type PERMA_0116 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type PERMA_0130 PWY-723 alkylnitronates degradation PERMA_0141 PWY-7560 methylerythritol phosphate pathway II PERMA_0146 PWY-5269 cardiolipin biosynthesis II PERMA_0146 PWY-5668 cardiolipin biosynthesis I PERMA_0148 PWY-43 putrescine biosynthesis II PERMA_0150 PWY-7205 CMP phosphorylation PERMA_0153 PWY-6167 flavin biosynthesis II (archaea) PERMA_0153 PWY-6168 flavin biosynthesis III (fungi) PERMA_0155 PWY-5101 L-isoleucine biosynthesis II PERMA_0155 PWY-5103 L-isoleucine biosynthesis III PERMA_0155 PWY-5104 L-isoleucine biosynthesis IV PERMA_0155 PWY-7111 pyruvate fermentation to isobutanol (engineered) PERMA_0157 PWY-5101 L-isoleucine biosynthesis II PERMA_0157 PWY-5103 L-isoleucine biosynthesis III PERMA_0157 PWY-5104 L-isoleucine biosynthesis IV PERMA_0157 PWY-5938 (R)-acetoin biosynthesis I PERMA_0157 PWY-5939 (R)-acetoin biosynthesis II PERMA_0157 PWY-6389 (S)-acetoin biosynthesis PERMA_0157 PWY-7111 pyruvate fermentation to isobutanol (engineered) PERMA_0158 PWY-5101 L-isoleucine biosynthesis II PERMA_0158 PWY-5103 L-isoleucine biosynthesis III PERMA_0158 PWY-5104 L-isoleucine biosynthesis IV PERMA_0158 PWY-5938 (R)-acetoin biosynthesis I PERMA_0158 PWY-5939 (R)-acetoin biosynthesis II PERMA_0158 PWY-6389 (S)-acetoin biosynthesis PERMA_0158 PWY-7111 pyruvate fermentation to isobutanol (engineered) PERMA_0161 PWY-6823 molybdenum cofactor biosynthesis PERMA_0169 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_0169 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_0169 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II PERMA_0169 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation PERMA_0169 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_0169 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_0182 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0184 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0190 PWY-6163 chorismate biosynthesis from 3-dehydroquinate PERMA_0198 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0218 PWY-6823 molybdenum cofactor biosynthesis PERMA_0218 PWY-6891 thiazole biosynthesis II (Bacillus) PERMA_0218 PWY-6892 thiazole biosynthesis I (E. coli) PERMA_0218 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis PERMA_0224 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation PERMA_0224 PWY-6596 adenosine nucleotides degradation I PERMA_0224 PWY-7221 guanosine ribonucleotides de novo biosynthesis PERMA_0227 PWY-1042 glycolysis IV (plant cytosol) PERMA_0227 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_0227 PWY-6886 1-butanol autotrophic biosynthesis PERMA_0227 PWY-6901 superpathway of glucose and xylose degradation PERMA_0227 PWY-7003 glycerol degradation to butanol PERMA_0228 PWY-2301 myo-inositol biosynthesis PERMA_0228 PWY-4702 phytate degradation I PERMA_0228 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation PERMA_0230 PWY-3461 L-tyrosine biosynthesis II PERMA_0230 PWY-3462 L-phenylalanine biosynthesis II PERMA_0230 PWY-6120 L-tyrosine biosynthesis III PERMA_0230 PWY-6627 salinosporamide A biosynthesis PERMA_0230 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) PERMA_0258 PWY-6654 phosphopantothenate biosynthesis III PERMA_0260 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0264 PWY-6938 NADH repair PERMA_0268 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_0276 PWY-5958 acridone alkaloid biosynthesis PERMA_0276 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis PERMA_0276 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis PERMA_0284 PWY-5686 UMP biosynthesis PERMA_0287 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_0287 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_0287 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_0289 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0289 PWY-4521 arsenite oxidation I (respiratory) PERMA_0289 PWY-6692 Fe(II) oxidation PERMA_0289 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0297 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II PERMA_0297 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II PERMA_0297 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II PERMA_0310 PWY-5194 siroheme biosynthesis PERMA_0310 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) PERMA_0314 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0314 PWY-4521 arsenite oxidation I (respiratory) PERMA_0314 PWY-6692 Fe(II) oxidation PERMA_0314 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0321 PWY-6163 chorismate biosynthesis from 3-dehydroquinate PERMA_0321 PWY-6416 quinate degradation II PERMA_0321 PWY-6707 gallate biosynthesis PERMA_0334 PWY-2301 myo-inositol biosynthesis PERMA_0334 PWY-4661 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) PERMA_0334 PWY-6372 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium) PERMA_0334 PWY-6580 phosphatidylinositol biosynthesis I (bacteria) PERMA_0334 PWY-6664 di-myo-inositol phosphate biosynthesis PERMA_0338 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) PERMA_0342 PWY-6832 2-aminoethylphosphonate degradation II PERMA_0359 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0359 PWY-4302 aerobic respiration III (alternative oxidase pathway) PERMA_0359 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation PERMA_0359 PWY-5690 TCA cycle II (plants and fungi) PERMA_0359 PWY-6728 methylaspartate cycle PERMA_0359 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_0359 PWY-7254 TCA cycle VII (acetate-producers) PERMA_0359 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0360 PWY-6700 queuosine biosynthesis PERMA_0368 PWY-6891 thiazole biosynthesis II (Bacillus) PERMA_0368 PWY-6892 thiazole biosynthesis I (E. coli) PERMA_0368 PWY-7560 methylerythritol phosphate pathway II PERMA_0373 PWY-2941 L-lysine biosynthesis II PERMA_0373 PWY-2942 L-lysine biosynthesis III PERMA_0373 PWY-5097 L-lysine biosynthesis VI PERMA_0373 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_0373 PWY-6559 spermidine biosynthesis II PERMA_0373 PWY-6562 norspermidine biosynthesis PERMA_0373 PWY-7153 grixazone biosynthesis PERMA_0373 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_0377 PWY-5198 factor 420 biosynthesis PERMA_0387 PWY-7396 butanol and isobutanol biosynthesis (engineered) PERMA_0388 PWY-5316 nicotine biosynthesis PERMA_0388 PWY-5381 pyridine nucleotide cycling (plants) PERMA_0388 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde PERMA_0388 PWY-7342 superpathway of nicotine biosynthesis PERMA_0400 PWY-5041 S-adenosyl-L-methionine cycle II PERMA_0400 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis PERMA_0408 PWY-5532 adenosine nucleotides degradation IV PERMA_0408 PWY-5723 Rubisco shunt PERMA_0411 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0411 PWY-4521 arsenite oxidation I (respiratory) PERMA_0411 PWY-6692 Fe(II) oxidation PERMA_0411 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0412 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0412 PWY-4521 arsenite oxidation I (respiratory) PERMA_0412 PWY-6692 Fe(II) oxidation PERMA_0412 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0417 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I PERMA_0417 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) PERMA_0426 PWY-5686 UMP biosynthesis PERMA_0431 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_0431 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_0433 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_0433 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_0433 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_0435 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_0435 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_0435 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_0444 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_0444 PWY-5189 tetrapyrrole biosynthesis II (from glycine) PERMA_0451 PWY-3961 phosphopantothenate biosynthesis II PERMA_0454 PWY-2941 L-lysine biosynthesis II PERMA_0454 PWY-2942 L-lysine biosynthesis III PERMA_0454 PWY-5097 L-lysine biosynthesis VI PERMA_0460 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_0460 PWY-5189 tetrapyrrole biosynthesis II (from glycine) PERMA_0469 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0469 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0470 PWY-1042 glycolysis IV (plant cytosol) PERMA_0470 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_0470 PWY-6901 superpathway of glucose and xylose degradation PERMA_0470 PWY-7003 glycerol degradation to butanol PERMA_0487 PWY-6167 flavin biosynthesis II (archaea) PERMA_0495 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation PERMA_0495 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II PERMA_0497 PWY-5316 nicotine biosynthesis PERMA_0497 PWY-7342 superpathway of nicotine biosynthesis PERMA_0507 PWY-5367 petroselinate biosynthesis PERMA_0507 PWY-5971 palmitate biosynthesis II (bacteria and plants) PERMA_0507 PWY-5973 cis-vaccenate biosynthesis PERMA_0507 PWY-5989 stearate biosynthesis II (bacteria and plants) PERMA_0507 PWY-5994 palmitate biosynthesis I (animals and fungi) PERMA_0507 PWY-6113 superpathway of mycolate biosynthesis PERMA_0507 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) PERMA_0507 PWY-6519 8-amino-7-oxononanoate biosynthesis I PERMA_0507 PWY-6951 PERMA_0507|fabG|YP_002730297.1|GeneID:7674702 PERMA_0507 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) PERMA_0507 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) PERMA_0507 PWYG-321 mycolate biosynthesis PERMA_0517 PWY-6683 sulfate reduction III (assimilatory) PERMA_0522 PWY-3801 sucrose degradation II (sucrose synthase) PERMA_0522 PWY-6527 stachyose degradation PERMA_0522 PWY-6981 chitin biosynthesis PERMA_0522 PWY-7238 sucrose biosynthesis II PERMA_0522 PWY-7343 UDP-glucose biosynthesis PERMA_0523 PWY-6123 inosine-5'-phosphate biosynthesis I PERMA_0523 PWY-6124 inosine-5'-phosphate biosynthesis II PERMA_0523 PWY-7234 inosine-5'-phosphate biosynthesis III PERMA_0538 PWY-2781 cis-zeatin biosynthesis PERMA_0549 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_0549 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_0549 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_0549 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_0549 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II PERMA_0549 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II PERMA_0549 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I PERMA_0549 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis PERMA_0551 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_0551 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_0551 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_0551 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_0551 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II PERMA_0551 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II PERMA_0551 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I PERMA_0551 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis PERMA_0556 PWY-5041 S-adenosyl-L-methionine cycle II PERMA_0558 PWY-5101 L-isoleucine biosynthesis II PERMA_0558 PWY-5103 L-isoleucine biosynthesis III PERMA_0558 PWY-5104 L-isoleucine biosynthesis IV PERMA_0558 PWY-7111 pyruvate fermentation to isobutanol (engineered) PERMA_0559 PWY-5041 S-adenosyl-L-methionine cycle II PERMA_0559 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis PERMA_0560 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA PERMA_0560 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA PERMA_0568 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_0579 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I PERMA_0579 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) PERMA_0581 PWY-6891 thiazole biosynthesis II (Bacillus) PERMA_0581 PWY-6892 thiazole biosynthesis I (E. coli) PERMA_0586 PWY-3781 aerobic respiration I (cytochrome c) PERMA_0586 PWY-6692 Fe(II) oxidation PERMA_0586 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) PERMA_0586 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_0589 PWY-3341 L-proline biosynthesis III PERMA_0589 PWY-4981 L-proline biosynthesis II (from arginine) PERMA_0589 PWY-6344 L-ornithine degradation II (Stickland reaction) PERMA_0596 PWY-7176 UTP and CTP de novo biosynthesis PERMA_0596 PWY-7177 UTP and CTP dephosphorylation II PERMA_0596 PWY-7185 UTP and CTP dephosphorylation I PERMA_0597 PWY-6672 cis-genanyl-CoA degradation PERMA_0597 PWY-7118 chitin degradation to ethanol PERMA_0606 PWY-6123 inosine-5'-phosphate biosynthesis I PERMA_0606 PWY-6124 inosine-5'-phosphate biosynthesis II PERMA_0606 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0606 PWY-7234 inosine-5'-phosphate biosynthesis III PERMA_0609 PWY-5381 pyridine nucleotide cycling (plants) PERMA_0609 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde PERMA_0616 PWY-5269 cardiolipin biosynthesis II PERMA_0616 PWY-5668 cardiolipin biosynthesis I PERMA_0620 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0620 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0621 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0621 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0622 PWY-5265 peptidoglycan biosynthesis II (staphylococci) PERMA_0622 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) PERMA_0622 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) PERMA_0622 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) PERMA_0624 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0624 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0627 PWY-101 photosynthesis light reactions PERMA_0627 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) PERMA_0628 PWY-4981 L-proline biosynthesis II (from arginine) PERMA_0628 PWY-4984 urea cycle PERMA_0628 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_0629 PWY-5686 UMP biosynthesis PERMA_0632 PWY-2161 folate polyglutamylation PERMA_0635 PWY-1861 formaldehyde assimilation II (RuMP Cycle) PERMA_0635 PWY-5723 Rubisco shunt PERMA_0638 PWY-5686 UMP biosynthesis PERMA_0641 PWY-6123 inosine-5'-phosphate biosynthesis I PERMA_0641 PWY-7234 inosine-5'-phosphate biosynthesis III PERMA_0648 PWY-4381 fatty acid biosynthesis initiation I PERMA_0648 PWY-6799 fatty acid biosynthesis (plant mitochondria) PERMA_0648 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) PERMA_0649 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II PERMA_0659 PWY-6784 cellulose and hemicellulose degradation (cellulolosome) PERMA_0715 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_0761 PWY-4381 fatty acid biosynthesis initiation I PERMA_0781 PWY-6823 molybdenum cofactor biosynthesis PERMA_0795 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis PERMA_0836 PWY-6672 cis-genanyl-CoA degradation PERMA_0836 PWY-7118 chitin degradation to ethanol PERMA_0858 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_0858 PWY-5686 UMP biosynthesis PERMA_0858 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_0859 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_0859 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_0859 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_0859 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_0859 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II PERMA_0859 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II PERMA_0859 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I PERMA_0859 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis PERMA_0861 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II PERMA_0861 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I PERMA_0861 PWY-6268 adenosylcobalamin salvage from cobalamin PERMA_0861 PWY-6269 adenosylcobalamin salvage from cobinamide II PERMA_0871 PWY-5198 factor 420 biosynthesis PERMA_0871 PWY-7371 1,4-dihydroxy-6-naphthoate biosynthesis II PERMA_0871 PWY-7374 1,4-dihydroxy-6-naphthoate biosynthesis I PERMA_0891 PWY-6683 sulfate reduction III (assimilatory) PERMA_0893 PWY-5194 siroheme biosynthesis PERMA_0893 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) PERMA_0904 PWY-5663 tetrahydrobiopterin biosynthesis I PERMA_0904 PWY-5664 tetrahydrobiopterin biosynthesis II PERMA_0904 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I PERMA_0904 PWY-6703 preQ0 biosynthesis PERMA_0904 PWY-6983 tetrahydrobiopterin biosynthesis III PERMA_0904 PWY-7442 drosopterin and aurodrosopterin biosynthesis PERMA_0907 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) PERMA_0907 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) PERMA_0907 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) PERMA_0911 PWY-1861 formaldehyde assimilation II (RuMP Cycle) PERMA_0911 PWY-5723 Rubisco shunt PERMA_0913 PWY-6871 3-methylbutanol biosynthesis PERMA_0917 PWY-5386 methylglyoxal degradation I PERMA_0940 PWY-5381 pyridine nucleotide cycling (plants) PERMA_0941 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0941 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_0946 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) PERMA_0946 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) PERMA_0958 PWY-6749 CMP-legionaminate biosynthesis I PERMA_0995 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_0995 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_1001 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_1001 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_1001 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_1001 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) PERMA_1008 PWY-5839 menaquinol-7 biosynthesis PERMA_1008 PWY-5844 menaquinol-9 biosynthesis PERMA_1008 PWY-5849 menaquinol-6 biosynthesis PERMA_1008 PWY-5890 menaquinol-10 biosynthesis PERMA_1008 PWY-5891 menaquinol-11 biosynthesis PERMA_1008 PWY-5892 menaquinol-12 biosynthesis PERMA_1008 PWY-5895 menaquinol-13 biosynthesis PERMA_1018 PWY-2941 L-lysine biosynthesis II PERMA_1018 PWY-5097 L-lysine biosynthesis VI PERMA_1020 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) PERMA_1020 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) PERMA_1041 PWY-5265 peptidoglycan biosynthesis II (staphylococci) PERMA_1041 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) PERMA_1041 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) PERMA_1046 PWY-1042 glycolysis IV (plant cytosol) PERMA_1046 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_1046 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_1046 PWY-7003 glycerol degradation to butanol PERMA_1047 PWY-1622 formaldehyde assimilation I (serine pathway) PERMA_1047 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_1053 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II PERMA_1058 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_1065 PWY-6823 molybdenum cofactor biosynthesis PERMA_1065 PWY-6891 thiazole biosynthesis II (Bacillus) PERMA_1065 PWY-6892 thiazole biosynthesis I (E. coli) PERMA_1065 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis PERMA_1072 PWY-6163 chorismate biosynthesis from 3-dehydroquinate PERMA_1076 PWY-6829 tRNA methylation (yeast) PERMA_1079 PWY-5101 L-isoleucine biosynthesis II PERMA_1079 PWY-6871 3-methylbutanol biosynthesis PERMA_1080 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) PERMA_1080 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) PERMA_1080 PWY-6896 thiamin salvage I PERMA_1080 PWY-6897 thiamin salvage II PERMA_1085 PWY-702 L-methionine biosynthesis II PERMA_1098 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_1098 PWY-5189 tetrapyrrole biosynthesis II (from glycine) PERMA_1104 PWY-1622 formaldehyde assimilation I (serine pathway) PERMA_1104 PWY-181 photorespiration PERMA_1104 PWY-2161 folate polyglutamylation PERMA_1104 PWY-2201 folate transformations I PERMA_1104 PWY-3661 glycine betaine degradation I PERMA_1104 PWY-3661-1 glycine betaine degradation II (mammalian) PERMA_1104 PWY-3841 folate transformations II PERMA_1104 PWY-5497 purine nucleobases degradation II (anaerobic) PERMA_1105 PWY-5083 NAD/NADH phosphorylation and dephosphorylation PERMA_1105 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) PERMA_1105 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) PERMA_1106 PWY-7560 methylerythritol phosphate pathway II PERMA_1120 PWY-6823 molybdenum cofactor biosynthesis PERMA_1121 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_1121 PWY-5686 UMP biosynthesis PERMA_1121 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_1123 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) PERMA_1123 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) PERMA_1123 PWY-6897 thiamin salvage II PERMA_1123 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) PERMA_1123 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) PERMA_1123 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) PERMA_1123 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) PERMA_1128 PWY-3461 L-tyrosine biosynthesis II PERMA_1128 PWY-3462 L-phenylalanine biosynthesis II PERMA_1128 PWY-6120 L-tyrosine biosynthesis III PERMA_1128 PWY-6627 salinosporamide A biosynthesis PERMA_1130 PWY-1622 formaldehyde assimilation I (serine pathway) PERMA_1130 PWY-5392 reductive TCA cycle II PERMA_1130 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation PERMA_1130 PWY-5690 TCA cycle II (plants and fungi) PERMA_1130 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1130 PWY-6728 methylaspartate cycle PERMA_1130 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1130 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type PERMA_1130 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) PERMA_1133 PWY-5392 reductive TCA cycle II PERMA_1133 PWY-5537 pyruvate fermentation to acetate V PERMA_1133 PWY-5538 pyruvate fermentation to acetate VI PERMA_1133 PWY-5690 TCA cycle II (plants and fungi) PERMA_1133 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1133 PWY-6728 methylaspartate cycle PERMA_1133 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1133 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) PERMA_1134 PWY-5392 reductive TCA cycle II PERMA_1134 PWY-5537 pyruvate fermentation to acetate V PERMA_1134 PWY-5538 pyruvate fermentation to acetate VI PERMA_1134 PWY-5690 TCA cycle II (plants and fungi) PERMA_1134 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1134 PWY-6728 methylaspartate cycle PERMA_1134 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1134 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) PERMA_1159 PWY-7560 methylerythritol phosphate pathway II PERMA_1163 PWY-6829 tRNA methylation (yeast) PERMA_1163 PWY-7285 methylwyosine biosynthesis PERMA_1163 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis PERMA_1217 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_1229 PWY-5057 L-valine degradation II PERMA_1229 PWY-5076 L-leucine degradation III PERMA_1229 PWY-5078 L-isoleucine degradation II PERMA_1229 PWY-5101 L-isoleucine biosynthesis II PERMA_1229 PWY-5103 L-isoleucine biosynthesis III PERMA_1229 PWY-5104 L-isoleucine biosynthesis IV PERMA_1229 PWY-5108 L-isoleucine biosynthesis V PERMA_1238 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) PERMA_1238 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) PERMA_1251 PWY-4041 γ-glutamyl cycle PERMA_1251 PWY-5826 hypoglycin biosynthesis PERMA_1252 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_1252 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_1281 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis PERMA_1285 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_1285 PWY-5686 UMP biosynthesis PERMA_1285 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_1286 PWY-7560 methylerythritol phosphate pathway II PERMA_1298 PWY-1042 glycolysis IV (plant cytosol) PERMA_1298 PWY-1861 formaldehyde assimilation II (RuMP Cycle) PERMA_1298 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_1298 PWY-7385 1,3-propanediol biosynthesis (engineered) PERMA_1320 PWY-6703 preQ0 biosynthesis PERMA_1355 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II PERMA_1366 PWY-7183 pyrimidine nucleobases salvage I PERMA_1380 PWY-5381 pyridine nucleotide cycling (plants) PERMA_1380 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation PERMA_1380 PWY-6596 adenosine nucleotides degradation I PERMA_1380 PWY-6606 guanosine nucleotides degradation II PERMA_1380 PWY-6607 guanosine nucleotides degradation I PERMA_1380 PWY-6608 guanosine nucleotides degradation III PERMA_1380 PWY-7185 UTP and CTP dephosphorylation I PERMA_1387 PWY-3781 aerobic respiration I (cytochrome c) PERMA_1387 PWY-4302 aerobic respiration III (alternative oxidase pathway) PERMA_1387 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation PERMA_1387 PWY-5690 TCA cycle II (plants and fungi) PERMA_1387 PWY-6728 methylaspartate cycle PERMA_1387 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1387 PWY-7254 TCA cycle VII (acetate-producers) PERMA_1387 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_1388 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I PERMA_1388 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II PERMA_1388 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis PERMA_1389 PWY-2941 L-lysine biosynthesis II PERMA_1389 PWY-2942 L-lysine biosynthesis III PERMA_1389 PWY-5097 L-lysine biosynthesis VI PERMA_1394 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II PERMA_1403 PWY-6012 acyl carrier protein metabolism I PERMA_1403 PWY-6012-1 acyl carrier protein metabolism II (mammalian) PERMA_1404 PWY-6163 chorismate biosynthesis from 3-dehydroquinate PERMA_1408 PWY-6700 queuosine biosynthesis PERMA_1410 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) PERMA_1410 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) PERMA_1410 PWY-6897 thiamin salvage II PERMA_1410 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) PERMA_1410 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) PERMA_1410 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) PERMA_1410 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) PERMA_1421 PWY-7221 guanosine ribonucleotides de novo biosynthesis PERMA_1441 PWY-5747 2-methylcitrate cycle II PERMA_1443 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type PERMA_1443 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_1443 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type PERMA_1443 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type PERMA_1464 PWY-5381 pyridine nucleotide cycling (plants) PERMA_1464 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde PERMA_1468 PWY-5971 palmitate biosynthesis II (bacteria and plants) PERMA_1468 PWY-5973 cis-vaccenate biosynthesis PERMA_1468 PWY-5989 stearate biosynthesis II (bacteria and plants) PERMA_1468 PWY-5994 palmitate biosynthesis I (animals and fungi) PERMA_1468 PWY-6113 superpathway of mycolate biosynthesis PERMA_1468 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) PERMA_1468 PWY-6519 8-amino-7-oxononanoate biosynthesis I PERMA_1468 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) PERMA_1468 PWYG-321 mycolate biosynthesis PERMA_1475 PWY-5839 menaquinol-7 biosynthesis PERMA_1475 PWY-5844 menaquinol-9 biosynthesis PERMA_1475 PWY-5849 menaquinol-6 biosynthesis PERMA_1475 PWY-5890 menaquinol-10 biosynthesis PERMA_1475 PWY-5891 menaquinol-11 biosynthesis PERMA_1475 PWY-5892 menaquinol-12 biosynthesis PERMA_1475 PWY-5895 menaquinol-13 biosynthesis PERMA_1476 PWY-6160 3-dehydroquinate biosynthesis II (archaea) PERMA_1482 PWY-5667 CDP-diacylglycerol biosynthesis I PERMA_1482 PWY-5981 CDP-diacylglycerol biosynthesis III PERMA_1486 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation PERMA_1500 PWY-6123 inosine-5'-phosphate biosynthesis I PERMA_1500 PWY-6124 inosine-5'-phosphate biosynthesis II PERMA_1500 PWY-7234 inosine-5'-phosphate biosynthesis III PERMA_1511 PWY-5807 heptaprenyl diphosphate biosynthesis PERMA_1512 PWY-5155 β-alanine biosynthesis III PERMA_1514 PWY-7560 methylerythritol phosphate pathway II PERMA_1517 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_1517 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_1545 PWY-5958 acridone alkaloid biosynthesis PERMA_1545 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis PERMA_1545 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis PERMA_1557 PWY-3801 sucrose degradation II (sucrose synthase) PERMA_1557 PWY-5054 sorbitol biosynthesis I PERMA_1557 PWY-5384 sucrose degradation IV (sucrose phosphorylase) PERMA_1557 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II PERMA_1557 PWY-5659 GDP-mannose biosynthesis PERMA_1557 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_1557 PWY-621 sucrose degradation III (sucrose invertase) PERMA_1557 PWY-622 starch biosynthesis PERMA_1557 PWY-6531 mannitol cycle PERMA_1557 PWY-6981 chitin biosynthesis PERMA_1557 PWY-7238 sucrose biosynthesis II PERMA_1557 PWY-7347 sucrose biosynthesis III PERMA_1557 PWY-7385 1,3-propanediol biosynthesis (engineered) PERMA_1558 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) PERMA_1560 PWY-5958 acridone alkaloid biosynthesis PERMA_1560 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis PERMA_1560 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis PERMA_1567 PWY-6599 guanine and guanosine salvage II PERMA_1567 PWY-6609 adenine and adenosine salvage III PERMA_1567 PWY-6610 adenine and adenosine salvage IV PERMA_1567 PWY-6620 guanine and guanosine salvage PERMA_1569 PWY-6167 flavin biosynthesis II (archaea) PERMA_1569 PWY-6168 flavin biosynthesis III (fungi) PERMA_1569 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) PERMA_1578 PWY-5656 mannosylglycerate biosynthesis I PERMA_1581 PWY-6936 seleno-amino acid biosynthesis PERMA_1586 PWY-381 nitrate reduction II (assimilatory) PERMA_1586 PWY-5675 nitrate reduction V (assimilatory) PERMA_1586 PWY-6549 L-glutamine biosynthesis III PERMA_1586 PWY-6963 ammonia assimilation cycle I PERMA_1586 PWY-6964 ammonia assimilation cycle II PERMA_1622 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I PERMA_1622 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) PERMA_1627 PWY-6749 CMP-legionaminate biosynthesis I PERMA_1627 PWY-7131 CMP-legionaminate biosynthesis II PERMA_1634 PWY-2941 L-lysine biosynthesis II PERMA_1634 PWY-2942 L-lysine biosynthesis III PERMA_1634 PWY-5097 L-lysine biosynthesis VI PERMA_1634 PWY-6559 spermidine biosynthesis II PERMA_1634 PWY-6562 norspermidine biosynthesis PERMA_1634 PWY-7153 grixazone biosynthesis PERMA_1636 PWY-1042 glycolysis IV (plant cytosol) PERMA_1636 PWY-1622 formaldehyde assimilation I (serine pathway) PERMA_1636 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) PERMA_1636 PWY-5484 glycolysis II (from fructose 6-phosphate) PERMA_1636 PWY-5723 Rubisco shunt PERMA_1636 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) PERMA_1636 PWY-6886 1-butanol autotrophic biosynthesis PERMA_1636 PWY-6901 superpathway of glucose and xylose degradation PERMA_1636 PWY-7003 glycerol degradation to butanol PERMA_1636 PWY-7124 ethylene biosynthesis V (engineered) PERMA_1636 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) PERMA_1638 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_1639 PWY-181 photorespiration PERMA_1643 PWY-6857 retinol biosynthesis PERMA_1644 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II PERMA_1648 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_1664 PWY-6910 hydroxymethylpyrimidine salvage PERMA_1664 PWY-7356 thiamin salvage IV (yeast) PERMA_1664 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) PERMA_1666 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) PERMA_1668 PWY-6834 spermidine biosynthesis III PERMA_1670 PWY-2201 folate transformations I PERMA_1670 PWY-3841 folate transformations II PERMA_1675 PWY-6614 tetrahydrofolate biosynthesis PERMA_1684 PWY-6654 phosphopantothenate biosynthesis III PERMA_1687 PWY-6834 spermidine biosynthesis III PERMA_1689 PWY-5041 S-adenosyl-L-methionine cycle II PERMA_1689 PWY-6151 S-adenosyl-L-methionine cycle I PERMA_1689 PWY-6936 seleno-amino acid biosynthesis PERMA_1689 PWY-702 L-methionine biosynthesis II PERMA_1696 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_1698 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_1704 PWY-1861 formaldehyde assimilation II (RuMP Cycle) PERMA_1704 PWY-5723 Rubisco shunt PERMA_1704 PWY-6891 thiazole biosynthesis II (Bacillus) PERMA_1704 PWY-6892 thiazole biosynthesis I (E. coli) PERMA_1704 PWY-6901 superpathway of glucose and xylose degradation PERMA_1704 PWY-7560 methylerythritol phosphate pathway II PERMA_1708 PWY-6317 galactose degradation I (Leloir pathway) PERMA_1708 PWY-6527 stachyose degradation PERMA_1712 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate PERMA_1712 PWY-2201 folate transformations I PERMA_1712 PWY-3841 folate transformations II PERMA_1712 PWY-5030 L-histidine degradation III PERMA_1712 PWY-5497 purine nucleobases degradation II (anaerobic) PERMA_1712 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate PERMA_1714 PWY-5392 reductive TCA cycle II PERMA_1714 PWY-5537 pyruvate fermentation to acetate V PERMA_1714 PWY-5538 pyruvate fermentation to acetate VI PERMA_1714 PWY-5690 TCA cycle II (plants and fungi) PERMA_1714 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1714 PWY-6728 methylaspartate cycle PERMA_1714 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1714 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) PERMA_1715 PWY-5392 reductive TCA cycle II PERMA_1715 PWY-5537 pyruvate fermentation to acetate V PERMA_1715 PWY-5538 pyruvate fermentation to acetate VI PERMA_1715 PWY-5690 TCA cycle II (plants and fungi) PERMA_1715 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1715 PWY-6728 methylaspartate cycle PERMA_1715 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1715 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) PERMA_1716 PWY-5913 TCA cycle VI (obligate autotrophs) PERMA_1716 PWY-6549 L-glutamine biosynthesis III PERMA_1716 PWY-6728 methylaspartate cycle PERMA_1716 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1716 PWY-7124 ethylene biosynthesis V (engineered) PERMA_1716 PWY-7254 TCA cycle VII (acetate-producers) PERMA_1716 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) PERMA_1722 PWY-6163 chorismate biosynthesis from 3-dehydroquinate PERMA_1726 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_1729 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III PERMA_1729 PWY-7176 UTP and CTP de novo biosynthesis PERMA_1729 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I PERMA_1729 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II PERMA_1729 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation PERMA_1729 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV PERMA_1729 PWY-7205 CMP phosphorylation PERMA_1729 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP PERMA_1729 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II PERMA_1729 PWY-7221 guanosine ribonucleotides de novo biosynthesis PERMA_1729 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II PERMA_1729 PWY-7224 purine deoxyribonucleosides salvage PERMA_1729 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I PERMA_1729 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis PERMA_1746 PWY-3781 aerobic respiration I (cytochrome c) PERMA_1746 PWY-4302 aerobic respiration III (alternative oxidase pathway) PERMA_1746 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation PERMA_1746 PWY-5690 TCA cycle II (plants and fungi) PERMA_1746 PWY-6728 methylaspartate cycle PERMA_1746 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) PERMA_1746 PWY-7254 TCA cycle VII (acetate-producers) PERMA_1746 PWY-7279 aerobic respiration II (cytochrome c) (yeast) PERMA_1749 PWY-6160 3-dehydroquinate biosynthesis II (archaea) PERMA_1761 PWY-5316 nicotine biosynthesis PERMA_1761 PWY-7342 superpathway of nicotine biosynthesis PERMA_1763 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) PERMA_1763 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) PERMA_1830 PWY-6478 GDP-D-glycero-α-D-manno-heptose biosynthesis PERMA_1841 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation PERMA_1848 PWY-4381 fatty acid biosynthesis initiation I PERMA_1848 PWY-5743 3-hydroxypropanoate cycle PERMA_1848 PWY-5744 glyoxylate assimilation PERMA_1848 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle PERMA_1848 PWY-6679 jadomycin biosynthesis PERMA_1848 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) PERMA_1854 PWY-6578 8-amino-7-oxononanoate biosynthesis III PERMA_1872 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation PERMA_1873 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation PERMA_1873 PWY-5389 3-methylthiopropanoate biosynthesis PERMA_1874 PWY-5971 palmitate biosynthesis II (bacteria and plants) PERMA_1874 PWY-5973 cis-vaccenate biosynthesis PERMA_1874 PWY-5989 stearate biosynthesis II (bacteria and plants) PERMA_1874 PWY-6113 superpathway of mycolate biosynthesis PERMA_1874 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) PERMA_1874 PWY-6519 8-amino-7-oxononanoate biosynthesis I PERMA_1874 PWY-7096 triclosan resistance PERMA_1874 PWYG-321 mycolate biosynthesis PERMA_1878 PWY-6700 queuosine biosynthesis PERMA_1899 PWY-6167 flavin biosynthesis II (archaea) PERMA_1899 PWY-6168 flavin biosynthesis III (fungi) PERMA_1899 PWY-7219 adenosine ribonucleotides de novo biosynthesis PERMA_1904 PWY-5988 wound-induced proteolysis I PERMA_1904 PWY-6018 seed germination protein turnover PERMA_1905 PWY-4381 fatty acid biosynthesis initiation I PERMA_1911 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) PERMA_1920 PWY-2301 myo-inositol biosynthesis PERMA_1920 PWY-4661 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) PERMA_1920 PWY-6372 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium) PERMA_1920 PWY-6580 phosphatidylinositol biosynthesis I (bacteria) PERMA_1920 PWY-6664 di-myo-inositol phosphate biosynthesis PERMA_1929 PWY-5269 cardiolipin biosynthesis II PERMA_1929 PWY-5668 cardiolipin biosynthesis I PERMA_1950 PWY-4983 L-citrulline-nitric oxide cycle PERMA_1950 PWY-4984 urea cycle PERMA_1950 PWY-5 canavanine biosynthesis PERMA_1950 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) PERMA_1950 PWY-7400 L-arginine biosynthesis IV (archaebacteria) PERMA_1970 PWY-5523 5,6-dimethylbenzimidazole biosynthesis PERMA_1970 PWY-6167 flavin biosynthesis II (archaea) PERMA_1970 PWY-6168 flavin biosynthesis III (fungi) PERMA_1976 PWY-6703 preQ0 biosynthesis PERMA_1982 PWY-6749 CMP-legionaminate biosynthesis I PERMA_1983 PWY-5278 sulfite oxidation III PERMA_1983 PWY-5340 sulfate activation for sulfonation PERMA_1983 PWY-6683 sulfate reduction III (assimilatory) PERMA_1983 PWY-6932 selenate reduction PERMA_1989 PWY-5340 sulfate activation for sulfonation PERMA_1993 PWY-5833 CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis PERMA_1993 PWY-5940 streptomycin biosynthesis PERMA_1995 PWY-5833 CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis PERMA_2002 PWY-5738 GDP-6-deoxy-D-talose biosynthesis PERMA_2002 PWY-5739 GDP-D-perosamine biosynthesis PERMA_2002 PWY-5740 GDP-L-colitose biosynthesis PERMA_2002 PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) PERMA_2004 PWY-5659 GDP-mannose biosynthesis PERMA_2004 PWY-6073 alginate biosynthesis I (algal) PERMA_2004 PWY-6082 alginate biosynthesis II (bacterial) PERMA_2004 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) PERMA_2007 PWY-3821 galactose degradation III PERMA_2007 PWY-6317 galactose degradation I (Leloir pathway) PERMA_2007 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis PERMA_2007 PWY-6527 stachyose degradation PERMA_2007 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis PERMA_2007 PWY-7344 UDP-D-galactose biosynthesis PERMA_2015 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I PERMA_2015 PWY-6148 tetrahydromethanopterin biosynthesis PERMA_2015 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) PERMA_2015 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) PERMA_2019 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I PERMA_2019 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate)