repA    1557 ..    1575 +  -5.3  -2.76263   GCTCGCGAACTTCAC             CTTTCTG TTTAT CAGAGAG             TGCTTCCCTCCTCCC  47 310
  I1A_000003 NONE
  I1A_000004    3595 ..    3608 +  -5.3  -3.03243   TCCCTCAAATAAATA               CAACA TATG TGTTG                TATTAGCACATAAAT  51 213
  I1A_000005 NONE
  I1A_000006    4310 ..    4329 +    -5  -4.03769   TATGTGTTGGTTGAA            GTTGCATA GGTA TACGCAAC             TTATTTAACTTATAT  63 17
        yafB NONE
  I1A_000008    5477 ..    5523 +  -4.8  -3.70751   AGCATAAAGCCTATA GCT-TGCAGAGCT-TGCAGAGCTT GCA GAGCT-TGCAGAGCT-TGCAGAGC TTGTTCGGATTATTG  56 106
  I1A_000009    6450 ..    6462 +  -3.4   -2.5474   TTCACCGATTAAAAA                CTCT AGGAA AGAG                GTCTTCTCGATAAAC  40 0
  I1A_000010    6780 ..    6795 + -11.8  -5.43414   CGTCAAACCCCAGAA              GCCCGC GTAT GCGGGC               TTTTTTGTATCTACT 100 42
  I1A_000011    7375 ..    7391 +  -5.1  -5.47964   AATATCGGAACCCCA              AAGGTAC TAT GTACCTG              TTTTTGTTCTTTTAT 100 297
        nusG    8986 ..    9014 + -10.4  -3.89215   GTTAAACACTTTGAA       CACACTG-CTTGC ATGC GCAAGGCGGTGTG        TTTGCATTTGTCCGG  82 58
  I1A_000014 NONE
       virB1 NONE
       virB2   10195 ..   10206 +  -3.6  -3.79519   CCGAAGAGTACGTTT                CGCT TTAA GGCG                 TTTACTACTCAACTT  54 297
       virB4 NONE
       virB5 NONE
  I1A_000019 NONE
       virB6 NONE
        pilL NONE
        pilN   17320 ..   17337 +  -2.6  -2.72511   AAAGACTTTGTAGCA             GGGCTG ATGTGG CAGCCG              CTTTCCCGGCCTCGG  39 92
        pilO NONE
        pilP NONE
        pilQ NONE
        pilR NONE
        pilS   22301 ..   22312 +  -2.2  -2.62263   CATTGTCCTGGTCTG                GTCG CTAA TGAC                 TGGTCTGCAAAGCGT  39 18
        pilU NONE
        pilV   24788 ..   24800 +  -4.1   -3.8211   GTATGCTGCTTTACC                GCAAT CTT GTTGC                TTCTTATGCATCAGC  57 201
  I1A_000030   25638 ..   25670 +    -2  -2.88404   CAACTTTATTCTCCT      TTCTTAGGGATGAA GAACA TTCATCTCAGGGGA      CTTATTGAGTTTTAA  41 50
       virB8 NONE
       virB9 NONE
      virB10 NONE
      virB11   29638 ..   29649 +  -5.8  -2.72471   CTAAACGGCCGTATG                GCCT AAGG AGGC                 GTTATGTGGTGGAAG  51 20
  I1A_000035 NONE
  I1A_000036   30286 ..   30303 +    -4  -3.57808   CGTCGCCGGTGTAGC             GGCCGG AGAGCG CCTGCC              TGTTTGTGCCTTGGC  52 112
  I1A_000037 NONE
  I1A_000038 NONE
       virD4 NONE
        kikA NONE
        traE   35644 ..   35656 +  -4.1  -3.52204   AAGGCAAAGTGAAGA                TGGTT TTT AACCG                TTAATTTCCGAATGA  52 9
         ssb   36388 ..   36406 +  -8.8  -3.05963   GGCCGTTGCAGGATG             ACAAGGGC AGC GCCCTTGG             TGTTCAGATCGAACT  65 211
  I1A_000043 NONE
  I1A_000044   37935 ..   37962 + -12.1  -3.40646   CGGCTAAACCGCAAA        GGC-GCACCACT CTTGC AGTGGTGCTGCC        TATTCCTTGTTTGTT  80 34
  I1A_000046   39289 ..   39302 +  -5.3  -2.62463   TGATCGAGCGGAAAC               CACAT ATTC ATGTG                ATTATCCCTCGTAAA  46 382
  I1A_000048   40578 ..   40588 +  -6.8  -3.08679   CCGCACAAAGTCGCA                 TCGG TTG CCGA                 TATTGAATCCCGAAG  56 286
  I1A_000049   42711 ..   42734 + -13.9  -2.74144   TAACCAGGTGCTGCC          CTCCTCCCC CTCCGT GGGGAGGAG           ATTTCGCGATGCAAA  79 38
  I1A_000050   43272 ..   43286 +  -7.2  -4.35327   CCCCTCAAAACTCGC               TTCATG GTG CATGAA               TTTGCTTTTTCATGC  76 89
  I1A_000051   43628 ..   43646 + -10.2  -4.58395   CGTAGAAACCAAAAA             GCCCGGCT GGT AACCGGGC             TTTTTGGAAAATCAG   0 47
  I1A_000047   38610 ..   38620 -  -2.4  -4.78848   TGGCGAAAGACAAAA                 CCCG CGT CGTG                 TCCTTCCGGGTCTCC  68 504
  I1A_000045   37935 ..   37962 - -12.1  -3.71649   CGGCTAAACCGCAAA        GGC-GCACCACT CTTGC AGTGGTGCTGCC        TATTCCTTGTTTGTT  85 25
         bip    6780 ..    6795 - -11.8  -3.39668   CGTCAAACCCCAGAA              GCCCGC GTAT GCGGGC               TTTTTTGTATCTACT  80 430
  I1A_000002     971 ..    1010 -  -6.2  -4.34267   CGACAGAATCCAAAA  TCCGCTCCGCATGCCGGC AACT GCAGGCACGTGGCGAGAA   ACTTCGACAAGCTGC  71 453