PP_0056	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PP_0056	PWY-7494	choline degradation IV
PP_0073	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PP_0073	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PP_0074	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_0100	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PP_0100	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_0100	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PP_0100	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PP_0104	PWY-3781	aerobic respiration I (cytochrome c)
PP_0104	PWY-4521	arsenite oxidation I (respiratory)
PP_0104	PWY-6692	Fe(II) oxidation
PP_0104	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_0115	PWY-5506	methanol oxidation to formaldehyde IV
PP_0121	PWY-702	L-methionine biosynthesis II
PP_0148	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_0184	PWY-4983	L-citrulline-nitric oxide cycle
PP_0184	PWY-4984	urea cycle
PP_0184	PWY-5	canavanine biosynthesis
PP_0184	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_0184	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_0186	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_0186	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PP_0187	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_0187	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PP_0228	PWY-6936	seleno-amino acid biosynthesis
PP_0228	PWY-7274	D-cycloserine biosynthesis
PP_0243	PWY-6840	homoglutathione biosynthesis
PP_0243	PWY-7255	ergothioneine biosynthesis I (bacteria)
PP_0266	PWY-43	putrescine biosynthesis II
PP_0302	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_0302	PWY-3602	L-carnitine degradation II
PP_0302	PWY-5109	2-methylbutanoate biosynthesis
PP_0302	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_0302	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PP_0302	PWY-5177	glutaryl-CoA degradation
PP_0302	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_0302	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_0302	PWY-6583	pyruvate fermentation to butanol I
PP_0302	PWY-6863	pyruvate fermentation to hexanol
PP_0302	PWY-6883	pyruvate fermentation to butanol II
PP_0302	PWY-6944	androstenedione degradation
PP_0302	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_0302	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_0302	PWY-7007	methyl ketone biosynthesis
PP_0302	PWY-7046	4-coumarate degradation (anaerobic)
PP_0302	PWY-7094	fatty acid salvage
PP_0302	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PP_0302	PWY-735	jasmonic acid biosynthesis
PP_0302	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PP_0302	PWY-7472	D-carnitine degradation II
PP_0308	PWY-7533	gliotoxin biosynthesis
PP_0322	PWY-1622	formaldehyde assimilation I (serine pathway)
PP_0322	PWY-181	photorespiration
PP_0322	PWY-2161	folate polyglutamylation
PP_0322	PWY-2201	folate transformations I
PP_0322	PWY-3661	glycine betaine degradation I
PP_0322	PWY-3661-1	glycine betaine degradation II (mammalian)
PP_0322	PWY-3841	folate transformations II
PP_0322	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_0323	PWY-3661	glycine betaine degradation I
PP_0323	PWY-4722	creatinine degradation II
PP_0324	PWY-3661	glycine betaine degradation I
PP_0324	PWY-4722	creatinine degradation II
PP_0325	PWY-3661	glycine betaine degradation I
PP_0325	PWY-4722	creatinine degradation II
PP_0326	PWY-3661	glycine betaine degradation I
PP_0326	PWY-4722	creatinine degradation II
PP_0327	PWY-2201	folate transformations I
PP_0327	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_0339	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_0339	PWY-6892	thiazole biosynthesis I (E. coli)
PP_0339	PWY-7560	methylerythritol phosphate pathway II
PP_0356	PWY-6728	methylaspartate cycle
PP_0356	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_0356	PWY-7118	chitin degradation to ethanol
PP_0356	PWY-7294	xylose degradation IV
PP_0356	PWY-7295	L-arabinose degradation IV
PP_0362	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PP_0363	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PP_0363	PWY-6578	8-amino-7-oxononanoate biosynthesis III
PP_0363	PWY-7147	8-amino-7-oxononanoate biosynthesis II
PP_0365	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PP_0366	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
PP_0376	PWY-6823	molybdenum cofactor biosynthesis
PP_0378	PWY-6420	pyrroloquinoline quinone biosynthesis
PP_0392	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_0392	PWY-6148	tetrahydromethanopterin biosynthesis
PP_0392	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PP_0392	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_0393	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_0393	PWY-6148	tetrahydromethanopterin biosynthesis
PP_0393	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PP_0393	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_0398	PWY-5350	thiosulfate disproportionation III (rhodanese)
PP_0415	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PP_0415	PWY-5723	Rubisco shunt
PP_0416	PWY-181	photorespiration
PP_0417	PWY-5958	acridone alkaloid biosynthesis
PP_0417	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PP_0417	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PP_0420	PWY-5958	acridone alkaloid biosynthesis
PP_0420	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PP_0420	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PP_0423	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PP_0423	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
PP_0430	PWY-723	alkylnitronates degradation
PP_0432	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_0432	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_0437	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PP_0437	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
PP_0438	PWY-3961	phosphopantothenate biosynthesis II
PP_0481	PWY-5506	methanol oxidation to formaldehyde IV
PP_0515	PWY-6167	flavin biosynthesis II (archaea)
PP_0515	PWY-6168	flavin biosynthesis III (fungi)
PP_0515	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_0516	PWY-6167	flavin biosynthesis II (archaea)
PP_0516	PWY-6168	flavin biosynthesis III (fungi)
PP_0516	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_0517	PWY-6167	flavin biosynthesis II (archaea)
PP_0517	PWY-6168	flavin biosynthesis III (fungi)
PP_0519	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PP_0519	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PP_0519	PWY-6896	thiamin salvage I
PP_0519	PWY-6897	thiamin salvage II
PP_0520	PWY-5269	cardiolipin biosynthesis II
PP_0520	PWY-5668	cardiolipin biosynthesis I
PP_0522	PWY-6168	flavin biosynthesis III (fungi)
PP_0522	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_0527	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_0527	PWY-6892	thiazole biosynthesis I (E. coli)
PP_0527	PWY-7560	methylerythritol phosphate pathway II
PP_0530	PWY-6167	flavin biosynthesis II (archaea)
PP_0530	PWY-6168	flavin biosynthesis III (fungi)
PP_0556	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PP_0556	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_0556	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PP_0560	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_0560	PWY-6416	quinate degradation II
PP_0560	PWY-6707	gallate biosynthesis
PP_0567	PWY-40	putrescine biosynthesis I
PP_0567	PWY-43	putrescine biosynthesis II
PP_0567	PWY-6305	putrescine biosynthesis IV
PP_0567	PWY-6834	spermidine biosynthesis III
PP_0591	PWY-6610	adenine and adenosine salvage IV
PP_0597	PWY-5642	2,4-dinitrotoluene degradation
PP_0597	PWY-6373	acrylate degradation
PP_0602	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PP_0602	PWY-6167	flavin biosynthesis II (archaea)
PP_0602	PWY-6168	flavin biosynthesis III (fungi)
PP_0606	PWY-7560	methylerythritol phosphate pathway II
PP_0613	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PP_0648	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_0671	PWY-1622	formaldehyde assimilation I (serine pathway)
PP_0671	PWY-181	photorespiration
PP_0671	PWY-2161	folate polyglutamylation
PP_0671	PWY-2201	folate transformations I
PP_0671	PWY-3661	glycine betaine degradation I
PP_0671	PWY-3661-1	glycine betaine degradation II (mammalian)
PP_0671	PWY-3841	folate transformations II
PP_0671	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_0723	PWY-7560	methylerythritol phosphate pathway II
PP_0732	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_0736	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_0736	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_0746	PWY-7183	pyrimidine nucleobases salvage I
PP_0751	PWY-7254	TCA cycle VII (acetate-producers)
PP_0774	PWY-1281	sulfoacetaldehyde degradation I
PP_0774	PWY-5482	pyruvate fermentation to acetate II
PP_0774	PWY-5485	pyruvate fermentation to acetate IV
PP_0774	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_0774	PWY-6637	sulfolactate degradation II
PP_0787	PWY-5316	nicotine biosynthesis
PP_0787	PWY-5381	pyridine nucleotide cycling (plants)
PP_0787	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PP_0787	PWY-7342	superpathway of nicotine biosynthesis
PP_0794	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
PP_0794	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
PP_0795	PWY-7310	D-glucosaminate degradation
PP_0813	PWY-3781	aerobic respiration I (cytochrome c)
PP_0813	PWY-4521	arsenite oxidation I (respiratory)
PP_0813	PWY-6692	Fe(II) oxidation
PP_0813	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_0813	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
PP_0823	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PP_0832	PWY-6700	queuosine biosynthesis
PP_0833	PWY-6700	queuosine biosynthesis
PP_0838	PWY-2301	<i>myo</i>-inositol biosynthesis
PP_0838	PWY-4702	phytate degradation I
PP_0838	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
PP_0840	PWY-6936	seleno-amino acid biosynthesis
PP_0840	PWY-7274	D-cycloserine biosynthesis
PP_0842	PWY-6823	molybdenum cofactor biosynthesis
PP_0842	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_0842	PWY-6892	thiazole biosynthesis I (E. coli)
PP_0842	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PP_0849	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PP_0849	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PP_0849	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_0849	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_0849	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PP_0849	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PP_0849	PWY-7205	CMP phosphorylation
PP_0849	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PP_0849	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_0849	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PP_0849	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_0849	PWY-7224	purine deoxyribonucleosides salvage
PP_0849	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_0849	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PP_0853	PWY-7560	methylerythritol phosphate pathway II
PP_0874	PWY-5692	allantoin degradation to glyoxylate II
PP_0874	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PP_0897	PWY-5392	reductive TCA cycle II
PP_0897	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_0897	PWY-5690	TCA cycle II (plants and fungi)
PP_0897	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_0897	PWY-6728	methylaspartate cycle
PP_0897	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_0897	PWY-7254	TCA cycle VII (acetate-producers)
PP_0897	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_0915	PWY-6854	ethylene biosynthesis III (microbes)
PP_0922	PWY-6012	acyl carrier protein metabolism I
PP_0931	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PP_0944	PWY-5392	reductive TCA cycle II
PP_0944	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_0944	PWY-5690	TCA cycle II (plants and fungi)
PP_0944	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_0944	PWY-6728	methylaspartate cycle
PP_0944	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_0944	PWY-7254	TCA cycle VII (acetate-producers)
PP_0944	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_0946	PWY-6854	ethylene biosynthesis III (microbes)
PP_0956	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_0956	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_0964	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_0964	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_0980	PWY-5988	wound-induced proteolysis I
PP_0980	PWY-6018	seed germination protein turnover
PP_1000	PWY-4981	L-proline biosynthesis II (from arginine)
PP_1000	PWY-4984	urea cycle
PP_1000	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_1001	PWY-4981	L-proline biosynthesis II (from arginine)
PP_1005	PWY-5874	heme degradation
PP_1005	PWY-5915	phycoerythrobilin biosynthesis I
PP_1005	PWY-5917	phycocyanobilin biosynthesis
PP_1005	PWY-7170	phytochromobilin biosynthesis
PP_1009	PWY-1042	glycolysis IV (plant cytosol)
PP_1009	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_1009	PWY-6901	superpathway of glucose and xylose degradation
PP_1009	PWY-7003	glycerol degradation to butanol
PP_1010	PWY-5101	L-isoleucine biosynthesis II
PP_1010	PWY-5103	L-isoleucine biosynthesis III
PP_1010	PWY-5104	L-isoleucine biosynthesis IV
PP_1010	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_1011	PWY-2723	trehalose degradation V
PP_1011	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PP_1011	PWY-5661	GDP-glucose biosynthesis
PP_1011	PWY-7238	sucrose biosynthesis II
PP_1011	PWY-7385	1,3-propanediol biosynthesis (engineered)
PP_1020	PWY-2723	trehalose degradation V
PP_1020	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PP_1020	PWY-5661	GDP-glucose biosynthesis
PP_1020	PWY-5940	streptomycin biosynthesis
PP_1020	PWY-621	sucrose degradation III (sucrose invertase)
PP_1020	PWY-622	starch biosynthesis
PP_1020	PWY-6731	starch degradation III
PP_1020	PWY-6737	starch degradation V
PP_1020	PWY-6981	chitin biosynthesis
PP_1020	PWY-7238	sucrose biosynthesis II
PP_1020	PWY-7343	UDP-glucose biosynthesis
PP_1022	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_1023	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PP_1023	PWY-6855	chitin degradation I (archaea)
PP_1023	PWY-6906	chitin derivatives degradation
PP_1024	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PP_1024	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
PP_1024	PWY-7242	D-fructuronate degradation
PP_1024	PWY-7310	D-glucosaminate degradation
PP_1025	PWY-6871	3-methylbutanol biosynthesis
PP_1031	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PP_1031	PWY-6596	adenosine nucleotides degradation I
PP_1031	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PP_1032	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PP_1037	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PP_1037	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PP_1037	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PP_1038	PWY-5663	tetrahydrobiopterin biosynthesis I
PP_1038	PWY-5664	tetrahydrobiopterin biosynthesis II
PP_1038	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_1038	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_1038	PWY-6983	tetrahydrobiopterin biosynthesis III
PP_1038	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_1073	PWY-4261	glycerol degradation I
PP_1073	PWY-6118	glycerol-3-phosphate shuttle
PP_1073	PWY-6952	glycerophosphodiester degradation
PP_1075	PWY-4261	glycerol degradation I
PP_1079	PWY-4981	L-proline biosynthesis II (from arginine)
PP_1079	PWY-4984	urea cycle
PP_1079	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_1086	PWY-5686	UMP biosynthesis
PP_1088	PWY-4983	L-citrulline-nitric oxide cycle
PP_1088	PWY-4984	urea cycle
PP_1088	PWY-5	canavanine biosynthesis
PP_1088	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_1088	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_1100	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1110	PWY-6936	seleno-amino acid biosynthesis
PP_1110	PWY-7274	D-cycloserine biosynthesis
PP_1126	PWY-6807	xyloglucan degradation II (exoglucanase)
PP_1129	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PP_1129	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PP_1163	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PP_1163	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PP_1177	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PP_1177	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_1177	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PP_1177	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PP_1177	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1177	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1177	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_1177	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PP_1179	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PP_1179	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_1179	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PP_1179	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PP_1179	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1179	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1179	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_1179	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
PP_1183	PWY-6012	acyl carrier protein metabolism I
PP_1183	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
PP_1225	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_1226	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_1231	PWY-5316	nicotine biosynthesis
PP_1231	PWY-7342	superpathway of nicotine biosynthesis
PP_1237	PWY-2941	L-lysine biosynthesis II
PP_1237	PWY-2942	L-lysine biosynthesis III
PP_1237	PWY-5097	L-lysine biosynthesis VI
PP_1240	PWY-6123	inosine-5'-phosphate biosynthesis I
PP_1240	PWY-6124	inosine-5'-phosphate biosynthesis II
PP_1240	PWY-7234	inosine-5'-phosphate biosynthesis III
PP_1251	PWY-7254	TCA cycle VII (acetate-producers)
PP_1277	PWY-5659	GDP-mannose biosynthesis
PP_1277	PWY-6073	alginate biosynthesis I (algal)
PP_1277	PWY-6082	alginate biosynthesis II (bacterial)
PP_1277	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PP_1281	PWY-6986	alginate degradation
PP_1288	PWY-6073	alginate biosynthesis I (algal)
PP_1288	PWY-6082	alginate biosynthesis II (bacterial)
PP_1294	PWY-6823	molybdenum cofactor biosynthesis
PP_1302	PWY-5663	tetrahydrobiopterin biosynthesis I
PP_1302	PWY-5664	tetrahydrobiopterin biosynthesis II
PP_1302	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_1302	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_1302	PWY-6983	tetrahydrobiopterin biosynthesis III
PP_1302	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_1303	PWY-5278	sulfite oxidation III
PP_1303	PWY-5340	sulfate activation for sulfonation
PP_1303	PWY-6683	sulfate reduction III (assimilatory)
PP_1303	PWY-6932	selenate reduction
PP_1304	PWY-5278	sulfite oxidation III
PP_1304	PWY-5340	sulfate activation for sulfonation
PP_1304	PWY-6683	sulfate reduction III (assimilatory)
PP_1304	PWY-6932	selenate reduction
PP_1317	PWY-3781	aerobic respiration I (cytochrome c)
PP_1317	PWY-6692	Fe(II) oxidation
PP_1317	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
PP_1317	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_1323	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
PP_1333	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_1333	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_1334	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_1334	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PP_1334	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_1335	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_1335	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_1337	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_1337	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PP_1337	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PP_1337	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_1338	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_1338	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_1339	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_1339	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_1346	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_1348	PWY-6502	oxidized GTP and dGTP detoxification
PP_1348	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PP_1348	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PP_1348	PWY-6897	thiamin salvage II
PP_1348	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PP_1348	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PP_1348	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
PP_1348	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PP_1349	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1349	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PP_1349	PWY-6268	adenosylcobalamin salvage from cobalamin
PP_1349	PWY-6269	adenosylcobalamin salvage from cobinamide II
PP_1351	PWY-6654	phosphopantothenate biosynthesis III
PP_1362	PWY-1042	glycolysis IV (plant cytosol)
PP_1362	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PP_1362	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_1362	PWY-5723	Rubisco shunt
PP_1362	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_1362	PWY-6886	1-butanol autotrophic biosynthesis
PP_1362	PWY-6901	superpathway of glucose and xylose degradation
PP_1362	PWY-7003	glycerol degradation to butanol
PP_1362	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PP_1362	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_1367	PWY-2201	folate transformations I
PP_1367	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_1377	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_1377	PWY-2361	3-oxoadipate degradation
PP_1377	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PP_1379	PWY-6123	inosine-5'-phosphate biosynthesis I
PP_1379	PWY-6124	inosine-5'-phosphate biosynthesis II
PP_1379	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_1379	PWY-7234	inosine-5'-phosphate biosynthesis III
PP_1380	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PP_1389	PWY-6339	syringate degradation
PP_1426	PWY-5316	nicotine biosynthesis
PP_1426	PWY-7342	superpathway of nicotine biosynthesis
PP_1464	PWY-6829	tRNA methylation (yeast)
PP_1464	PWY-7285	methylwyosine biosynthesis
PP_1464	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
PP_1505	PWY-1622	formaldehyde assimilation I (serine pathway)
PP_1505	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
PP_1505	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_1505	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_1505	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
PP_1505	PWY-6549	L-glutamine biosynthesis III
PP_1505	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PP_1505	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PP_1505	PWY-7124	ethylene biosynthesis V (engineered)
PP_1506	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_1520	PWY-5667	CDP-diacylglycerol biosynthesis I
PP_1520	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
PP_1597	PWY-7560	methylerythritol phosphate pathway II
PP_1602	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PP_1602	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PP_1602	PWY-5989	stearate biosynthesis II (bacteria and plants)
PP_1602	PWY-5994	palmitate biosynthesis I (animals and fungi)
PP_1602	PWY-6113	superpathway of mycolate biosynthesis
PP_1602	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PP_1602	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PP_1602	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_1602	PWYG-321	mycolate biosynthesis
PP_1607	PWY-4381	fatty acid biosynthesis initiation I
PP_1607	PWY-5743	3-hydroxypropanoate cycle
PP_1607	PWY-5744	glyoxylate assimilation
PP_1607	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_1607	PWY-6679	jadomycin biosynthesis
PP_1607	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_1610	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
PP_1610	PWY-7177	UTP and CTP dephosphorylation II
PP_1610	PWY-7185	UTP and CTP dephosphorylation I
PP_1611	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_1611	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_1612	PWY-1042	glycolysis IV (plant cytosol)
PP_1612	PWY-1622	formaldehyde assimilation I (serine pathway)
PP_1612	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PP_1612	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_1612	PWY-5723	Rubisco shunt
PP_1612	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_1612	PWY-6886	1-butanol autotrophic biosynthesis
PP_1612	PWY-6901	superpathway of glucose and xylose degradation
PP_1612	PWY-7003	glycerol degradation to butanol
PP_1612	PWY-7124	ethylene biosynthesis V (engineered)
PP_1612	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PP_1614	PWY-7560	methylerythritol phosphate pathway II
PP_1616	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_1616	PWY-3162	L-tryptophan degradation V (side chain pathway)
PP_1616	PWY-5057	L-valine degradation II
PP_1616	PWY-5076	L-leucine degradation III
PP_1616	PWY-5078	L-isoleucine degradation II
PP_1616	PWY-5079	L-phenylalanine degradation III
PP_1616	PWY-5082	L-methionine degradation III
PP_1616	PWY-5480	pyruvate fermentation to ethanol I
PP_1616	PWY-5486	pyruvate fermentation to ethanol II
PP_1616	PWY-5751	phenylethanol biosynthesis
PP_1616	PWY-6028	acetoin degradation
PP_1616	PWY-6313	serotonin degradation
PP_1616	PWY-6333	acetaldehyde biosynthesis I
PP_1616	PWY-6342	noradrenaline and adrenaline degradation
PP_1616	PWY-6587	pyruvate fermentation to ethanol III
PP_1616	PWY-6802	salidroside biosynthesis
PP_1616	PWY-6871	3-methylbutanol biosynthesis
PP_1616	PWY-7013	L-1,2-propanediol degradation
PP_1616	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_1616	PWY-7118	chitin degradation to ethanol
PP_1616	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PP_1616	PWY-7557	dehydrodiconiferyl alcohol degradation
PP_1617	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_1618	PWY-7560	methylerythritol phosphate pathway II
PP_1620	PWY-5381	pyridine nucleotide cycling (plants)
PP_1620	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PP_1620	PWY-6596	adenosine nucleotides degradation I
PP_1620	PWY-6606	guanosine nucleotides degradation II
PP_1620	PWY-6607	guanosine nucleotides degradation I
PP_1620	PWY-6608	guanosine nucleotides degradation III
PP_1620	PWY-7185	UTP and CTP dephosphorylation I
PP_1636	PWY-7039	phosphatidate metabolism, as a signaling molecule
PP_1644	PWY-6785	hydrogen production VIII
PP_1645	PWY-4202	arsenate detoxification I (glutaredoxin)
PP_1645	PWY-4621	arsenate detoxification II (glutaredoxin)
PP_1654	PWY-6936	seleno-amino acid biosynthesis
PP_1664	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PP_1664	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PP_1665	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PP_1665	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PP_1665	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PP_1672	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1672	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PP_1672	PWY-6268	adenosylcobalamin salvage from cobalamin
PP_1672	PWY-6269	adenosylcobalamin salvage from cobinamide II
PP_1674	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1674	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
PP_1676	PWY-5443	aminopropanol phosphate biosynthesis I
PP_1678	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1678	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PP_1678	PWY-6269	adenosylcobalamin salvage from cobinamide II
PP_1679	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1679	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PP_1679	PWY-6269	adenosylcobalamin salvage from cobinamide II
PP_1681	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
PP_1681	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
PP_1681	PWY-6269	adenosylcobalamin salvage from cobinamide II
PP_1705	PWY-6683	sulfate reduction III (assimilatory)
PP_1754	PWY-6986	alginate degradation
PP_1755	PWY-5392	reductive TCA cycle II
PP_1755	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_1755	PWY-5690	TCA cycle II (plants and fungi)
PP_1755	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_1755	PWY-6728	methylaspartate cycle
PP_1755	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_1755	PWY-7254	TCA cycle VII (acetate-producers)
PP_1755	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_1764	PWY-181	photorespiration
PP_1765	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
PP_1765	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
PP_1765	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
PP_1765	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
PP_1765	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
PP_1765	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
PP_1765	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
PP_1765	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
PP_1765	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
PP_1765	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
PP_1766	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
PP_1766	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
PP_1769	PWY-3461	L-tyrosine biosynthesis II
PP_1769	PWY-3462	L-phenylalanine biosynthesis II
PP_1769	PWY-6120	L-tyrosine biosynthesis III
PP_1769	PWY-6627	salinosporamide A biosynthesis
PP_1769	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
PP_1770	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_1771	PWY-7205	CMP phosphorylation
PP_1776	PWY-5659	GDP-mannose biosynthesis
PP_1776	PWY-6073	alginate biosynthesis I (algal)
PP_1776	PWY-6082	alginate biosynthesis II (bacterial)
PP_1776	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
PP_1777	PWY-6749	CMP-legionaminate biosynthesis I
PP_1783	PWY-3221	dTDP-L-rhamnose biosynthesis II
PP_1783	PWY-6808	dTDP-D-forosamine biosynthesis
PP_1783	PWY-6942	dTDP-D-desosamine biosynthesis
PP_1783	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PP_1783	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PP_1783	PWY-6974	dTDP-L-olivose biosynthesis
PP_1783	PWY-6976	dTDP-L-mycarose biosynthesis
PP_1783	PWY-7104	dTDP-L-megosamine biosynthesis
PP_1783	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PP_1783	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PP_1783	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PP_1783	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PP_1783	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PP_1783	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PP_1783	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PP_1783	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PP_1785	PWY-3221	dTDP-L-rhamnose biosynthesis II
PP_1785	PWY-6808	dTDP-D-forosamine biosynthesis
PP_1785	PWY-6942	dTDP-D-desosamine biosynthesis
PP_1785	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
PP_1785	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
PP_1785	PWY-6974	dTDP-L-olivose biosynthesis
PP_1785	PWY-6976	dTDP-L-mycarose biosynthesis
PP_1785	PWY-7104	dTDP-L-megosamine biosynthesis
PP_1785	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
PP_1785	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
PP_1785	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
PP_1785	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
PP_1785	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
PP_1785	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
PP_1785	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
PP_1785	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
PP_1790	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_1790	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_1791	PWY-5162	2-oxopentenoate degradation
PP_1799	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
PP_1799	PWY-5739	GDP-D-perosamine biosynthesis
PP_1799	PWY-5740	GDP-L-colitose biosynthesis
PP_1799	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
PP_1804	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_1804	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PP_1804	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_1807	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_1807	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_1808	PWY-3801	sucrose degradation II (sucrose synthase)
PP_1808	PWY-5054	sorbitol biosynthesis I
PP_1808	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PP_1808	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PP_1808	PWY-5659	GDP-mannose biosynthesis
PP_1808	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_1808	PWY-621	sucrose degradation III (sucrose invertase)
PP_1808	PWY-622	starch biosynthesis
PP_1808	PWY-6531	mannitol cycle
PP_1808	PWY-6981	chitin biosynthesis
PP_1808	PWY-7238	sucrose biosynthesis II
PP_1808	PWY-7347	sucrose biosynthesis III
PP_1808	PWY-7385	1,3-propanediol biosynthesis (engineered)
PP_1811	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
PP_1815	PWY-5686	UMP biosynthesis
PP_1823	PWY-5663	tetrahydrobiopterin biosynthesis I
PP_1823	PWY-5664	tetrahydrobiopterin biosynthesis II
PP_1823	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_1823	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_1823	PWY-6983	tetrahydrobiopterin biosynthesis III
PP_1823	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_1830	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_1832	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
PP_1844	PWY-5667	CDP-diacylglycerol biosynthesis I
PP_1844	PWY-5981	CDP-diacylglycerol biosynthesis III
PP_1844	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
PP_1844	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
PP_1866	PWY-6164	3-dehydroquinate biosynthesis I
PP_1902	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_1902	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_1904	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_1904	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_1913	PWY-4381	fatty acid biosynthesis initiation I
PP_1913	PWY-6799	fatty acid biosynthesis (plant mitochondria)
PP_1913	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_1914	PWY-5367	petroselinate biosynthesis
PP_1914	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PP_1914	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PP_1914	PWY-5989	stearate biosynthesis II (bacteria and plants)
PP_1914	PWY-5994	palmitate biosynthesis I (animals and fungi)
PP_1914	PWY-6113	superpathway of mycolate biosynthesis
PP_1914	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PP_1914	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PP_1914	PWY-6951	PP_1914
PP_1914	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
PP_1914	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_1914	PWYG-321	mycolate biosynthesis
PP_1917	PWY-6543	4-aminobenzoate biosynthesis
PP_1917	PWY-6722	candicidin biosynthesis
PP_1919	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PP_1919	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_1919	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_1919	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
PP_1919	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PP_1919	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PP_1943	PWY-2201	folate transformations I
PP_1943	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_1945	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PP_1945	PWY-2201	folate transformations I
PP_1945	PWY-3841	folate transformations II
PP_1945	PWY-5030	L-histidine degradation III
PP_1945	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_1945	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PP_1949	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PP_1949	PWY-7494	choline degradation IV
PP_1969	PWY-6823	molybdenum cofactor biosynthesis
PP_1972	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_1972	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PP_1972	PWY-6638	sulfolactate degradation III
PP_1972	PWY-6642	(<i>R</i>)-cysteate degradation
PP_1972	PWY-6643	coenzyme M biosynthesis II
PP_1972	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PP_1972	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PP_1972	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_1977	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_1988	PWY-7396	butanol and isobutanol biosynthesis (engineered)
PP_1989	PWY-2941	L-lysine biosynthesis II
PP_1989	PWY-2942	L-lysine biosynthesis III
PP_1989	PWY-5097	L-lysine biosynthesis VI
PP_1989	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_1989	PWY-6559	spermidine biosynthesis II
PP_1989	PWY-6562	norspermidine biosynthesis
PP_1989	PWY-7153	grixazone biosynthesis
PP_1989	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_1992	PWY-2941	L-lysine biosynthesis II
PP_1992	PWY-2942	L-lysine biosynthesis III
PP_1992	PWY-5097	L-lysine biosynthesis VI
PP_1992	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_1992	PWY-6559	spermidine biosynthesis II
PP_1992	PWY-6562	norspermidine biosynthesis
PP_1992	PWY-7153	grixazone biosynthesis
PP_1992	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_1996	PWY-4381	fatty acid biosynthesis initiation I
PP_1996	PWY-5743	3-hydroxypropanoate cycle
PP_1996	PWY-5744	glyoxylate assimilation
PP_1996	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_1996	PWY-6679	jadomycin biosynthesis
PP_1996	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_1997	PWY-2161	folate polyglutamylation
PP_2000	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PP_2000	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PP_2000	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PP_2000	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PP_2012	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PP_2012	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_2012	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
PP_2047	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_2047	PWY-5109	2-methylbutanoate biosynthesis
PP_2047	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_2047	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PP_2047	PWY-5177	glutaryl-CoA degradation
PP_2047	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_2047	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_2047	PWY-6583	pyruvate fermentation to butanol I
PP_2047	PWY-6863	pyruvate fermentation to hexanol
PP_2047	PWY-6883	pyruvate fermentation to butanol II
PP_2047	PWY-6944	androstenedione degradation
PP_2047	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_2047	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_2047	PWY-7007	methyl ketone biosynthesis
PP_2047	PWY-7046	4-coumarate degradation (anaerobic)
PP_2047	PWY-7094	fatty acid salvage
PP_2047	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PP_2047	PWY-735	jasmonic acid biosynthesis
PP_2047	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PP_2077	PWY-2941	L-lysine biosynthesis II
PP_2077	PWY-2942	L-lysine biosynthesis III
PP_2077	PWY-5097	L-lysine biosynthesis VI
PP_2080	PWY-5022	4-aminobutanoate degradation V
PP_2080	PWY-6728	methylaspartate cycle
PP_2080	PWY-7126	ethylene biosynthesis IV
PP_2082	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_2090	PWY-5194	siroheme biosynthesis
PP_2090	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_2095	PWY-5686	UMP biosynthesis
PP_2098	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_2098	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_2108	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PP_2123	PWY-6823	molybdenum cofactor biosynthesis
PP_2136	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_2136	PWY-5109	2-methylbutanoate biosynthesis
PP_2136	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_2136	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
PP_2136	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PP_2136	PWY-5177	glutaryl-CoA degradation
PP_2136	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_2136	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_2136	PWY-6583	pyruvate fermentation to butanol I
PP_2136	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
PP_2136	PWY-6863	pyruvate fermentation to hexanol
PP_2136	PWY-6883	pyruvate fermentation to butanol II
PP_2136	PWY-6944	androstenedione degradation
PP_2136	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_2136	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_2136	PWY-7007	methyl ketone biosynthesis
PP_2136	PWY-7046	4-coumarate degradation (anaerobic)
PP_2136	PWY-7094	fatty acid salvage
PP_2136	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PP_2136	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
PP_2136	PWY-735	jasmonic acid biosynthesis
PP_2136	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PP_2137	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_2137	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_2137	PWY-6863	pyruvate fermentation to hexanol
PP_2137	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_2137	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_2137	PWY-6948	sitosterol degradation to androstenedione
PP_2137	PWY-7094	fatty acid salvage
PP_2137	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
PP_2137	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
PP_2137	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
PP_2137	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
PP_2137	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
PP_2137	PWY-735	jasmonic acid biosynthesis
PP_2145	PWY-6902	chitin degradation II
PP_2149	PWY-1042	glycolysis IV (plant cytosol)
PP_2149	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_2149	PWY-6901	superpathway of glucose and xylose degradation
PP_2149	PWY-7003	glycerol degradation to butanol
PP_2151	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
PP_2160	PWY-6700	queuosine biosynthesis
PP_2168	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PP_2168	PWY-5723	Rubisco shunt
PP_2170	PWY-3461	L-tyrosine biosynthesis II
PP_2170	PWY-3462	L-phenylalanine biosynthesis II
PP_2170	PWY-6120	L-tyrosine biosynthesis III
PP_2170	PWY-6627	salinosporamide A biosynthesis
PP_2174	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_2178	PWY-381	nitrate reduction II (assimilatory)
PP_2178	PWY-5675	nitrate reduction V (assimilatory)
PP_2178	PWY-6549	L-glutamine biosynthesis III
PP_2178	PWY-6963	ammonia assimilation cycle I
PP_2178	PWY-6964	ammonia assimilation cycle II
PP_2185	PWY-1881	formate oxidation to CO<sub>2</sub>
PP_2185	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_2185	PWY-6696	oxalate degradation III
PP_2196	PWY-40	putrescine biosynthesis I
PP_2196	PWY-6305	putrescine biosynthesis IV
PP_2209	PWY-6832	2-aminoethylphosphonate degradation II
PP_2265	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
PP_2265	PWY-2201	folate transformations I
PP_2265	PWY-3841	folate transformations II
PP_2265	PWY-5030	L-histidine degradation III
PP_2265	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_2265	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
PP_2324	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_2324	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_2324	PWY-6164	3-dehydroquinate biosynthesis I
PP_2325	PWY-6654	phosphopantothenate biosynthesis III
PP_2329	PWY-5958	acridone alkaloid biosynthesis
PP_2329	PWY-6543	4-aminobenzoate biosynthesis
PP_2329	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
PP_2329	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
PP_2329	PWY-6722	candicidin biosynthesis
PP_2334	PWY-5747	2-methylcitrate cycle II
PP_2339	PWY-5747	2-methylcitrate cycle II
PP_2371	PWY-6683	sulfate reduction III (assimilatory)
PP_2375	PWY-2201	folate transformations I
PP_2375	PWY-3841	folate transformations II
PP_2406	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_2407	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_2407	PWY-6416	quinate degradation II
PP_2407	PWY-6707	gallate biosynthesis
PP_2435	PWY-6823	molybdenum cofactor biosynthesis
PP_2435	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_2435	PWY-6892	thiazole biosynthesis I (E. coli)
PP_2435	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PP_2482	PWY-6823	molybdenum cofactor biosynthesis
PP_2512	PWY-5663	tetrahydrobiopterin biosynthesis I
PP_2512	PWY-5664	tetrahydrobiopterin biosynthesis II
PP_2512	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_2512	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_2512	PWY-6983	tetrahydrobiopterin biosynthesis III
PP_2512	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_2528	PWY-5344	L-homocysteine biosynthesis
PP_2528	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
PP_2531	PWY-5381	pyridine nucleotide cycling (plants)
PP_2531	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PP_2531	PWY-6596	adenosine nucleotides degradation I
PP_2531	PWY-6606	guanosine nucleotides degradation II
PP_2531	PWY-6607	guanosine nucleotides degradation I
PP_2531	PWY-6608	guanosine nucleotides degradation III
PP_2531	PWY-7185	UTP and CTP dephosphorylation I
PP_2582	PWY-5874	heme degradation
PP_2582	PWY-5915	phycoerythrobilin biosynthesis I
PP_2582	PWY-5917	phycocyanobilin biosynthesis
PP_2582	PWY-7170	phytochromobilin biosynthesis
PP_2608	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_2635	PWY-1001	cellulose biosynthesis
PP_2637	PWY-6788	cellulose degradation II (fungi)
PP_2639	PWY-2941	L-lysine biosynthesis II
PP_2639	PWY-2942	L-lysine biosynthesis III
PP_2639	PWY-5097	L-lysine biosynthesis VI
PP_2693	PWY-7533	gliotoxin biosynthesis
PP_2698	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PP_2698	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PP_2698	PWY-6936	seleno-amino acid biosynthesis
PP_2698	PWY-702	L-methionine biosynthesis II
PP_2742	PWY-5692	allantoin degradation to glyoxylate II
PP_2742	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PP_2800	PWY-6409	pyoverdine I biosynthesis
PP_2800	PWY-6562	norspermidine biosynthesis
PP_2800	PWY-761	rhizobactin 1021 biosynthesis
PP_2843	PWY-5704	urea degradation II
PP_2844	PWY-5704	urea degradation II
PP_2845	PWY-5704	urea degradation II
PP_2887	PWY-5506	methanol oxidation to formaldehyde IV
PP_2904	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_2913	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_2913	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PP_2916	PWY-6167	flavin biosynthesis II (archaea)
PP_2916	PWY-6168	flavin biosynthesis III (fungi)
PP_2916	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_2925	PWY-7254	TCA cycle VII (acetate-producers)
PP_2926	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
PP_2929	PWY-6562	norspermidine biosynthesis
PP_2932	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
PP_2973	PWY-7039	phosphatidate metabolism, as a signaling molecule
PP_2991	PWY-5451	acetone degradation I (to methylglyoxal)
PP_2991	PWY-6588	pyruvate fermentation to acetone
PP_2991	PWY-6876	isopropanol biosynthesis
PP_2991	PWY-7466	acetone degradation III (to propane-1,2-diol)
PP_2998	PWY-6654	phosphopantothenate biosynthesis III
PP_3002	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_3003	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_3003	PWY-6416	quinate degradation II
PP_3003	PWY-6707	gallate biosynthesis
PP_3066	PWY-6902	chitin degradation II
PP_3080	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
PP_3080	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
PP_3080	PWY-6164	3-dehydroquinate biosynthesis I
PP_3129	PWY-3821	galactose degradation III
PP_3129	PWY-6317	galactose degradation I (Leloir pathway)
PP_3129	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
PP_3129	PWY-6527	stachyose degradation
PP_3129	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
PP_3129	PWY-7344	UDP-D-galactose biosynthesis
PP_3136	PWY-6936	seleno-amino acid biosynthesis
PP_3136	PWY-7274	D-cycloserine biosynthesis
PP_3142	PWY-6655	xanthan biosynthesis
PP_3142	PWY-6658	acetan biosynthesis
PP_3148	PWY-381	nitrate reduction II (assimilatory)
PP_3148	PWY-5675	nitrate reduction V (assimilatory)
PP_3148	PWY-6549	L-glutamine biosynthesis III
PP_3148	PWY-6963	ammonia assimilation cycle I
PP_3148	PWY-6964	ammonia assimilation cycle II
PP_3186	PWY-6899	base-degraded thiamin salvage
PP_3186	PWY-7356	thiamin salvage IV (yeast)
PP_3207	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
PP_3207	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
PP_3216	PWY-5331	taurine biosynthesis
PP_3253	PWY-6840	homoglutathione biosynthesis
PP_3253	PWY-7255	ergothioneine biosynthesis I (bacteria)
PP_3279	PWY-1341	phenylacetate degradation II (anaerobic)
PP_3279	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PP_3280	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_3280	PWY-2361	3-oxoadipate degradation
PP_3280	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PP_3282	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_3282	PWY-5109	2-methylbutanoate biosynthesis
PP_3282	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_3282	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PP_3282	PWY-5177	glutaryl-CoA degradation
PP_3282	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_3282	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_3282	PWY-6583	pyruvate fermentation to butanol I
PP_3282	PWY-6863	pyruvate fermentation to hexanol
PP_3282	PWY-6883	pyruvate fermentation to butanol II
PP_3282	PWY-6944	androstenedione degradation
PP_3282	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_3282	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_3282	PWY-7007	methyl ketone biosynthesis
PP_3282	PWY-7046	4-coumarate degradation (anaerobic)
PP_3282	PWY-7094	fatty acid salvage
PP_3282	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PP_3282	PWY-735	jasmonic acid biosynthesis
PP_3282	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PP_3322	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_3322	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
PP_3324	PWY-5663	tetrahydrobiopterin biosynthesis I
PP_3324	PWY-5664	tetrahydrobiopterin biosynthesis II
PP_3324	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_3324	PWY-6703	preQ<sub>0</sub> biosynthesis
PP_3324	PWY-6983	tetrahydrobiopterin biosynthesis III
PP_3324	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_3384	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
PP_3394	PWY-6871	3-methylbutanol biosynthesis
PP_3410	PWY-5194	siroheme biosynthesis
PP_3410	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_3416	PWY-5530	sorbitol biosynthesis II
PP_3416	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_3457	PWY-5964	guanylyl molybdenum cofactor biosynthesis
PP_3461	PWY-6823	molybdenum cofactor biosynthesis
PP_3511	PWY-5057	L-valine degradation II
PP_3511	PWY-5076	L-leucine degradation III
PP_3511	PWY-5078	L-isoleucine degradation II
PP_3511	PWY-5101	L-isoleucine biosynthesis II
PP_3511	PWY-5103	L-isoleucine biosynthesis III
PP_3511	PWY-5104	L-isoleucine biosynthesis IV
PP_3511	PWY-5108	L-isoleucine biosynthesis V
PP_3530	PWY-5692	allantoin degradation to glyoxylate II
PP_3530	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PP_3535	PWY-4041	&gamma;-glutamyl cycle
PP_3535	PWY-5826	hypoglycin biosynthesis
PP_3537	PWY-6215	4-chlorobenzoate degradation
PP_3540	PWY-5074	mevalonate degradation
PP_3571	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_3578	PWY-2723	trehalose degradation V
PP_3578	PWY-3801	sucrose degradation II (sucrose synthase)
PP_3578	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PP_3578	PWY-5661	GDP-glucose biosynthesis
PP_3578	PWY-5661-1	PP_3578
PP_3578	PWY-5940	streptomycin biosynthesis
PP_3578	PWY-5941	glycogen degradation II (eukaryotic)
PP_3578	PWY-622	starch biosynthesis
PP_3578	PWY-6731	starch degradation III
PP_3578	PWY-6737	starch degradation V
PP_3578	PWY-6749	CMP-legionaminate biosynthesis I
PP_3578	PWY-7238	sucrose biosynthesis II
PP_3578	PWY-7343	UDP-glucose biosynthesis
PP_3590	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_3590	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
PP_3590	PWY-6638	sulfolactate degradation III
PP_3590	PWY-6642	(<i>R</i>)-cysteate degradation
PP_3590	PWY-6643	coenzyme M biosynthesis II
PP_3590	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
PP_3590	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
PP_3590	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_3599	PWY-6497	D-galactarate degradation II
PP_3599	PWY-6499	D-glucarate degradation II
PP_3601	PWY-6497	D-galactarate degradation II
PP_3633	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_3633	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_3664	PWY-5269	cardiolipin biosynthesis II
PP_3664	PWY-5668	cardiolipin biosynthesis I
PP_3714	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
PP_3722	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_3724	PWY-5392	reductive TCA cycle II
PP_3724	PWY-5537	pyruvate fermentation to acetate V
PP_3724	PWY-5538	pyruvate fermentation to acetate VI
PP_3724	PWY-5690	TCA cycle II (plants and fungi)
PP_3724	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_3724	PWY-6728	methylaspartate cycle
PP_3724	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_3724	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_3745	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_3745	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_3746	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_3746	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_3755	PWY-1361	benzoyl-CoA degradation I (aerobic)
PP_3755	PWY-5109	2-methylbutanoate biosynthesis
PP_3755	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
PP_3755	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
PP_3755	PWY-5177	glutaryl-CoA degradation
PP_3755	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_3755	PWY-6435	4-hydroxybenzoate biosynthesis V
PP_3755	PWY-6583	pyruvate fermentation to butanol I
PP_3755	PWY-6863	pyruvate fermentation to hexanol
PP_3755	PWY-6883	pyruvate fermentation to butanol II
PP_3755	PWY-6944	androstenedione degradation
PP_3755	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
PP_3755	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
PP_3755	PWY-7007	methyl ketone biosynthesis
PP_3755	PWY-7046	4-coumarate degradation (anaerobic)
PP_3755	PWY-7094	fatty acid salvage
PP_3755	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
PP_3755	PWY-735	jasmonic acid biosynthesis
PP_3755	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
PP_3763	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
PP_3766	PWY-5386	methylglyoxal degradation I
PP_3768	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_3778	PWY-3341	L-proline biosynthesis III
PP_3778	PWY-4981	L-proline biosynthesis II (from arginine)
PP_3778	PWY-6344	L-ornithine degradation II (Stickland reaction)
PP_3787	PWY-4381	fatty acid biosynthesis initiation I
PP_3790	PWY-2941	L-lysine biosynthesis II
PP_3790	PWY-5097	L-lysine biosynthesis VI
PP_3813	PWY-6167	flavin biosynthesis II (archaea)
PP_3813	PWY-6168	flavin biosynthesis III (fungi)
PP_3813	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_3819	PWY-4081	glutathione redox reactions I
PP_3821	PWY-3801	sucrose degradation II (sucrose synthase)
PP_3821	PWY-6527	stachyose degradation
PP_3821	PWY-6981	chitin biosynthesis
PP_3821	PWY-7238	sucrose biosynthesis II
PP_3821	PWY-7343	UDP-glucose biosynthesis
PP_3827	PWY-723	alkylnitronates degradation
PP_3844	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_3942	PWY-5033	nicotinate degradation II
PP_3942	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_3942	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_3942	PWY-6993	nicotine degradation II (pyrrolidine pathway)
PP_3942	PWY-722	nicotinate degradation I
PP_3998	PWY-4061	glutathione-mediated detoxification I
PP_3998	PWY-6842	glutathione-mediated detoxification II
PP_3998	PWY-7112	4-hydroxy-2-nonenal detoxification
PP_3998	PWY-7533	gliotoxin biosynthesis
PP_3999	PWY-5194	siroheme biosynthesis
PP_3999	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_4000	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
PP_4011	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_4011	PWY-6549	L-glutamine biosynthesis III
PP_4011	PWY-6728	methylaspartate cycle
PP_4011	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4011	PWY-7124	ethylene biosynthesis V (engineered)
PP_4011	PWY-7254	TCA cycle VII (acetate-producers)
PP_4011	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_4012	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_4012	PWY-6549	L-glutamine biosynthesis III
PP_4012	PWY-6728	methylaspartate cycle
PP_4012	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4012	PWY-7124	ethylene biosynthesis V (engineered)
PP_4012	PWY-7254	TCA cycle VII (acetate-producers)
PP_4012	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_4016	PWY-6123	inosine-5'-phosphate biosynthesis I
PP_4016	PWY-6124	inosine-5'-phosphate biosynthesis II
PP_4016	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_4016	PWY-7234	inosine-5'-phosphate biosynthesis III
PP_4029	PWY-5381	pyridine nucleotide cycling (plants)
PP_4036	PWY-3982	uracil degradation I (reductive)
PP_4036	PWY-6430	thymine degradation
PP_4042	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_4050	PWY-622	starch biosynthesis
PP_4051	PWY-2661	trehalose biosynthesis V
PP_4052	PWY-5941	glycogen degradation II (eukaryotic)
PP_4052	PWY-6724	starch degradation II
PP_4052	PWY-6737	starch degradation V
PP_4052	PWY-7238	sucrose biosynthesis II
PP_4053	PWY-2661	trehalose biosynthesis V
PP_4058	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
PP_4058	PWY-622	starch biosynthesis
PP_4059	PWY-2622	trehalose biosynthesis IV
PP_4065	PWY-4381	fatty acid biosynthesis initiation I
PP_4065	PWY-5743	3-hydroxypropanoate cycle
PP_4065	PWY-5744	glyoxylate assimilation
PP_4065	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
PP_4065	PWY-6679	jadomycin biosynthesis
PP_4065	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_4097	PWY-5269	cardiolipin biosynthesis II
PP_4097	PWY-5668	cardiolipin biosynthesis I
PP_4116	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4144	PWY-5386	methylglyoxal degradation I
PP_4169	PWY-5667	CDP-diacylglycerol biosynthesis I
PP_4169	PWY-5981	CDP-diacylglycerol biosynthesis III
PP_4174	PWY-5971	palmitate biosynthesis II (bacteria and plants)
PP_4174	PWY-5973	<i>cis</i>-vaccenate biosynthesis
PP_4174	PWY-5989	stearate biosynthesis II (bacteria and plants)
PP_4174	PWY-5994	palmitate biosynthesis I (animals and fungi)
PP_4174	PWY-6113	superpathway of mycolate biosynthesis
PP_4174	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
PP_4174	PWY-6519	8-amino-7-oxononanoate biosynthesis I
PP_4174	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
PP_4174	PWYG-321	mycolate biosynthesis
PP_4175	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_4185	PWY-5392	reductive TCA cycle II
PP_4185	PWY-5537	pyruvate fermentation to acetate V
PP_4185	PWY-5538	pyruvate fermentation to acetate VI
PP_4185	PWY-5690	TCA cycle II (plants and fungi)
PP_4185	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_4185	PWY-6728	methylaspartate cycle
PP_4185	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4185	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_4186	PWY-5392	reductive TCA cycle II
PP_4186	PWY-5537	pyruvate fermentation to acetate V
PP_4186	PWY-5538	pyruvate fermentation to acetate VI
PP_4186	PWY-5690	TCA cycle II (plants and fungi)
PP_4186	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_4186	PWY-6728	methylaspartate cycle
PP_4186	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4186	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_4187	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PP_4187	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PP_4188	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PP_4189	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PP_4190	PWY-3781	aerobic respiration I (cytochrome c)
PP_4190	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PP_4190	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_4190	PWY-5690	TCA cycle II (plants and fungi)
PP_4190	PWY-6728	methylaspartate cycle
PP_4190	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4190	PWY-7254	TCA cycle VII (acetate-producers)
PP_4190	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4191	PWY-3781	aerobic respiration I (cytochrome c)
PP_4191	PWY-4302	aerobic respiration III (alternative oxidase pathway)
PP_4191	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_4191	PWY-5690	TCA cycle II (plants and fungi)
PP_4191	PWY-6728	methylaspartate cycle
PP_4191	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_4191	PWY-7254	TCA cycle VII (acetate-producers)
PP_4191	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4213	PWY-7533	gliotoxin biosynthesis
PP_4223	PWY-6409	pyoverdine I biosynthesis
PP_4223	PWY-6562	norspermidine biosynthesis
PP_4223	PWY-761	rhizobactin 1021 biosynthesis
PP_4250	PWY-3781	aerobic respiration I (cytochrome c)
PP_4250	PWY-4521	arsenite oxidation I (respiratory)
PP_4250	PWY-6692	Fe(II) oxidation
PP_4250	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4251	PWY-3781	aerobic respiration I (cytochrome c)
PP_4251	PWY-4521	arsenite oxidation I (respiratory)
PP_4251	PWY-6692	Fe(II) oxidation
PP_4251	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4255	PWY-3781	aerobic respiration I (cytochrome c)
PP_4255	PWY-4521	arsenite oxidation I (respiratory)
PP_4255	PWY-6692	Fe(II) oxidation
PP_4255	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4256	PWY-3781	aerobic respiration I (cytochrome c)
PP_4256	PWY-4521	arsenite oxidation I (respiratory)
PP_4256	PWY-6692	Fe(II) oxidation
PP_4256	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
PP_4266	PWY-6605	adenine and adenosine salvage II
PP_4266	PWY-6610	adenine and adenosine salvage IV
PP_4278	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_4278	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PP_4278	PWY-6538	caffeine degradation III (bacteria, via demethylation)
PP_4278	PWY-6596	adenosine nucleotides degradation I
PP_4278	PWY-6606	guanosine nucleotides degradation II
PP_4278	PWY-6607	guanosine nucleotides degradation I
PP_4278	PWY-6608	guanosine nucleotides degradation III
PP_4278	PWY-6999	theophylline degradation
PP_4279	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_4279	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
PP_4279	PWY-6538	caffeine degradation III (bacteria, via demethylation)
PP_4279	PWY-6596	adenosine nucleotides degradation I
PP_4279	PWY-6606	guanosine nucleotides degradation II
PP_4279	PWY-6607	guanosine nucleotides degradation I
PP_4279	PWY-6608	guanosine nucleotides degradation III
PP_4279	PWY-6999	theophylline degradation
PP_4281	PWY-5497	purine nucleobases degradation II (anaerobic)
PP_4281	PWY-6606	guanosine nucleotides degradation II
PP_4281	PWY-6608	guanosine nucleotides degradation III
PP_4281	PWY-7442	drosopterin and aurodrosopterin biosynthesis
PP_4285	PWY-5691	urate degradation to allantoin I
PP_4285	PWY-7394	urate degradation to allantoin II
PP_4287	PWY-5691	urate degradation to allantoin I
PP_4287	PWY-7394	urate degradation to allantoin II
PP_4288	PWY-5694	allantoin degradation to glyoxylate I
PP_4288	PWY-5705	allantoin degradation to glyoxylate III
PP_4301	PWY-1042	glycolysis IV (plant cytosol)
PP_4301	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PP_4301	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_4301	PWY-5723	Rubisco shunt
PP_4301	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_4301	PWY-6886	1-butanol autotrophic biosynthesis
PP_4301	PWY-6901	superpathway of glucose and xylose degradation
PP_4301	PWY-7003	glycerol degradation to butanol
PP_4301	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PP_4301	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_4310	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_4310	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_4314	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
PP_4346	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_4346	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_4350	PWY-6823	molybdenum cofactor biosynthesis
PP_4350	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_4350	PWY-6892	thiazole biosynthesis I (E. coli)
PP_4350	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
PP_4366	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_4379	PWY-4381	fatty acid biosynthesis initiation I
PP_4399	PWY-381	nitrate reduction II (assimilatory)
PP_4399	PWY-5675	nitrate reduction V (assimilatory)
PP_4399	PWY-6549	L-glutamine biosynthesis III
PP_4399	PWY-6963	ammonia assimilation cycle I
PP_4399	PWY-6964	ammonia assimilation cycle II
PP_4401	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PP_4404	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PP_4404	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PP_4452	PWY-6654	phosphopantothenate biosynthesis III
PP_4469	PWY-5532	adenosine nucleotides degradation IV
PP_4473	PWY-2941	L-lysine biosynthesis II
PP_4473	PWY-2942	L-lysine biosynthesis III
PP_4473	PWY-5097	L-lysine biosynthesis VI
PP_4473	PWY-6559	spermidine biosynthesis II
PP_4473	PWY-6562	norspermidine biosynthesis
PP_4473	PWY-7153	grixazone biosynthesis
PP_4487	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PP_4487	PWY-7118	chitin degradation to ethanol
PP_4490	PWY-6134	L-tyrosine biosynthesis IV
PP_4490	PWY-7158	L-phenylalanine degradation V
PP_4491	PWY-7158	L-phenylalanine degradation V
PP_4493	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_4493	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_4523	PWY-40	putrescine biosynthesis I
PP_4523	PWY-6305	putrescine biosynthesis IV
PP_4545	PWY-4381	fatty acid biosynthesis initiation I
PP_4547	PWY-381	nitrate reduction II (assimilatory)
PP_4547	PWY-5675	nitrate reduction V (assimilatory)
PP_4547	PWY-6549	L-glutamine biosynthesis III
PP_4547	PWY-6963	ammonia assimilation cycle I
PP_4547	PWY-6964	ammonia assimilation cycle II
PP_4571	PWY-6936	seleno-amino acid biosynthesis
PP_4597	PWY-6823	molybdenum cofactor biosynthesis
PP_4637	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PP_4637	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
PP_4637	PWY-6936	seleno-amino acid biosynthesis
PP_4637	PWY-702	L-methionine biosynthesis II
PP_4638	PWY-2201	folate transformations I
PP_4638	PWY-3841	folate transformations II
PP_4659	PWY-4041	&gamma;-glutamyl cycle
PP_4659	PWY-5826	hypoglycin biosynthesis
PP_4665	PWY-5692	allantoin degradation to glyoxylate II
PP_4665	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PP_4667	PWY-5642	2,4-dinitrotoluene degradation
PP_4667	PWY-6373	acrylate degradation
PP_4677	PWY-5669	phosphatidylethanolamine biosynthesis I
PP_4678	PWY-5101	L-isoleucine biosynthesis II
PP_4678	PWY-5103	L-isoleucine biosynthesis III
PP_4678	PWY-5104	L-isoleucine biosynthesis IV
PP_4678	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_4679	PWY-5101	L-isoleucine biosynthesis II
PP_4679	PWY-5103	L-isoleucine biosynthesis III
PP_4679	PWY-5104	L-isoleucine biosynthesis IV
PP_4679	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PP_4679	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PP_4679	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PP_4679	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_4680	PWY-5101	L-isoleucine biosynthesis II
PP_4680	PWY-5103	L-isoleucine biosynthesis III
PP_4680	PWY-5104	L-isoleucine biosynthesis IV
PP_4680	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
PP_4680	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
PP_4680	PWY-6389	(<i>S</i>)-acetoin biosynthesis
PP_4680	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_4683	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_4683	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
PP_4683	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
PP_4683	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_4698	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
PP_4698	PWY-6148	tetrahydromethanopterin biosynthesis
PP_4698	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
PP_4698	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
PP_4699	PWY-6654	phosphopantothenate biosynthesis III
PP_4701	PWY-3801	sucrose degradation II (sucrose synthase)
PP_4701	PWY-5054	sorbitol biosynthesis I
PP_4701	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PP_4701	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PP_4701	PWY-5659	GDP-mannose biosynthesis
PP_4701	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_4701	PWY-621	sucrose degradation III (sucrose invertase)
PP_4701	PWY-622	starch biosynthesis
PP_4701	PWY-6531	mannitol cycle
PP_4701	PWY-6981	chitin biosynthesis
PP_4701	PWY-7238	sucrose biosynthesis II
PP_4701	PWY-7347	sucrose biosynthesis III
PP_4701	PWY-7385	1,3-propanediol biosynthesis (engineered)
PP_4702	PWY-6672	<i>cis</i>-genanyl-CoA degradation
PP_4702	PWY-7118	chitin degradation to ethanol
PP_4715	PWY-1042	glycolysis IV (plant cytosol)
PP_4715	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_4715	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_4715	PWY-7003	glycerol degradation to butanol
PP_4716	PWY-6749	CMP-legionaminate biosynthesis I
PP_4717	PWY-6614	tetrahydrofolate biosynthesis
PP_4723	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_4723	PWY-5686	UMP biosynthesis
PP_4723	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_4724	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_4724	PWY-5686	UMP biosynthesis
PP_4724	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_4725	PWY-2941	L-lysine biosynthesis II
PP_4725	PWY-2942	L-lysine biosynthesis III
PP_4725	PWY-5097	L-lysine biosynthesis VI
PP_4737	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_4737	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_4757	PWY-6499	D-glucarate degradation II
PP_4779	PWY-6617	adenosine nucleotides degradation III
PP_4783	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
PP_4783	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
PP_4783	PWY-6897	thiamin salvage II
PP_4783	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
PP_4783	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
PP_4783	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
PP_4783	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
PP_4784	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
PP_4800	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PP_4800	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
PP_4800	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
PP_4801	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
PP_4801	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
PP_4803	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
PP_4803	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
PP_4810	PWY-5381	pyridine nucleotide cycling (plants)
PP_4810	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
PP_4822	PWY-6123	inosine-5'-phosphate biosynthesis I
PP_4822	PWY-6124	inosine-5'-phosphate biosynthesis II
PP_4822	PWY-7234	inosine-5'-phosphate biosynthesis III
PP_4823	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
PP_4823	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
PP_4823	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
PP_4826	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_4827	PWY-5194	siroheme biosynthesis
PP_4827	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_4829	PWY-6683	sulfate reduction III (assimilatory)
PP_4830	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_4831	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
PP_4868	PWY-5381	pyridine nucleotide cycling (plants)
PP_4889	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_4895	PWY-2781	<i>cis</i>-zeatin biosynthesis
PP_4907	PWY-5350	thiosulfate disproportionation III (rhodanese)
PP_4908	PWY-5669	phosphatidylethanolamine biosynthesis I
PP_4922	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
PP_4947	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
PP_4947	PWY-6853	ethylene biosynthesis II (microbes)
PP_4947	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
PP_4960	PWY-1042	glycolysis IV (plant cytosol)
PP_4960	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PP_4960	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_4960	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_4960	PWY-7385	1,3-propanediol biosynthesis (engineered)
PP_4963	PWY-1042	glycolysis IV (plant cytosol)
PP_4963	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_4963	PWY-6886	1-butanol autotrophic biosynthesis
PP_4963	PWY-6901	superpathway of glucose and xylose degradation
PP_4963	PWY-7003	glycerol degradation to butanol
PP_4965	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PP_4965	PWY-5723	Rubisco shunt
PP_4965	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_4965	PWY-6892	thiazole biosynthesis I (E. coli)
PP_4965	PWY-6901	superpathway of glucose and xylose degradation
PP_4965	PWY-7560	methylerythritol phosphate pathway II
PP_4967	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
PP_4967	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
PP_4977	PWY-2201	folate transformations I
PP_4977	PWY-3841	folate transformations II
PP_4998	PWY-5686	UMP biosynthesis
PP_4999	PWY-5686	UMP biosynthesis
PP_5011	PWY-5839	menaquinol-7 biosynthesis
PP_5011	PWY-5844	menaquinol-9 biosynthesis
PP_5011	PWY-5849	menaquinol-6 biosynthesis
PP_5011	PWY-5890	menaquinol-10 biosynthesis
PP_5011	PWY-5891	menaquinol-11 biosynthesis
PP_5011	PWY-5892	menaquinol-12 biosynthesis
PP_5011	PWY-5895	menaquinol-13 biosynthesis
PP_5030	PWY-5028	L-histidine degradation II
PP_5030	PWY-5030	L-histidine degradation III
PP_5032	PWY-5028	L-histidine degradation II
PP_5032	PWY-5030	L-histidine degradation III
PP_5033	PWY-5028	L-histidine degradation II
PP_5033	PWY-5030	L-histidine degradation III
PP_5040	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_5041	PWY-5941	glycogen degradation II (eukaryotic)
PP_5041	PWY-622	starch biosynthesis
PP_5041	PWY-6731	starch degradation III
PP_5041	PWY-6737	starch degradation V
PP_5041	PWY-7238	sucrose biosynthesis II
PP_5046	PWY-381	nitrate reduction II (assimilatory)
PP_5046	PWY-5675	nitrate reduction V (assimilatory)
PP_5046	PWY-6549	L-glutamine biosynthesis III
PP_5046	PWY-6963	ammonia assimilation cycle I
PP_5046	PWY-6964	ammonia assimilation cycle II
PP_5056	PWY-1042	glycolysis IV (plant cytosol)
PP_5056	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
PP_5056	PWY-5484	glycolysis II (from fructose 6-phosphate)
PP_5056	PWY-5723	Rubisco shunt
PP_5056	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
PP_5056	PWY-6886	1-butanol autotrophic biosynthesis
PP_5056	PWY-6901	superpathway of glucose and xylose degradation
PP_5056	PWY-7003	glycerol degradation to butanol
PP_5056	PWY-7124	ethylene biosynthesis V (engineered)
PP_5056	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
PP_5063	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PP_5063	PWY-7494	choline degradation IV
PP_5064	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
PP_5064	PWY-7494	choline degradation IV
PP_5074	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
PP_5074	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
PP_5078	PWY-6164	3-dehydroquinate biosynthesis I
PP_5079	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
PP_5094	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_5095	PWY-3341	L-proline biosynthesis III
PP_5095	PWY-4981	L-proline biosynthesis II (from arginine)
PP_5095	PWY-6344	L-ornithine degradation II (Stickland reaction)
PP_5097	PWY-5344	L-homocysteine biosynthesis
PP_5100	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PP_5104	PWY-6891	thiazole biosynthesis II (Bacillus)
PP_5104	PWY-6892	thiazole biosynthesis I (E. coli)
PP_5128	PWY-5101	L-isoleucine biosynthesis II
PP_5128	PWY-5103	L-isoleucine biosynthesis III
PP_5128	PWY-5104	L-isoleucine biosynthesis IV
PP_5128	PWY-7111	pyruvate fermentation to isobutanol (engineered)
PP_5132	PWY-3841	folate transformations II
PP_5132	PWY-6614	tetrahydrofolate biosynthesis
PP_5141	PWY-3841	folate transformations II
PP_5141	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_5141	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_5141	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
PP_5141	PWY-7199	pyrimidine deoxyribonucleosides salvage
PP_5141	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
PP_5150	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
PP_5150	PWY-5723	Rubisco shunt
PP_5154	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
PP_5154	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
PP_5183	PWY-381	nitrate reduction II (assimilatory)
PP_5183	PWY-5675	nitrate reduction V (assimilatory)
PP_5183	PWY-6549	L-glutamine biosynthesis III
PP_5183	PWY-6963	ammonia assimilation cycle I
PP_5183	PWY-6964	ammonia assimilation cycle II
PP_5184	PWY-381	nitrate reduction II (assimilatory)
PP_5184	PWY-5675	nitrate reduction V (assimilatory)
PP_5184	PWY-6549	L-glutamine biosynthesis III
PP_5184	PWY-6963	ammonia assimilation cycle I
PP_5184	PWY-6964	ammonia assimilation cycle II
PP_5185	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_5186	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_5214	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_5227	PWY-2941	L-lysine biosynthesis II
PP_5227	PWY-2942	L-lysine biosynthesis III
PP_5227	PWY-5097	L-lysine biosynthesis VI
PP_5228	PWY-2941	L-lysine biosynthesis II
PP_5228	PWY-5097	L-lysine biosynthesis VI
PP_5269	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
PP_5279	PWY-5692	allantoin degradation to glyoxylate II
PP_5279	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
PP_5286	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
PP_5286	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
PP_5286	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
PP_5286	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
PP_5288	PWY-6749	CMP-legionaminate biosynthesis I
PP_5289	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
PP_5289	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
PP_5291	PWY-5686	UMP biosynthesis
PP_5296	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
PP_5299	PWY-381	nitrate reduction II (assimilatory)
PP_5299	PWY-5675	nitrate reduction V (assimilatory)
PP_5299	PWY-6549	L-glutamine biosynthesis III
PP_5299	PWY-6963	ammonia assimilation cycle I
PP_5299	PWY-6964	ammonia assimilation cycle II
PP_5317	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
PP_5317	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
PP_5317	PWY-6148	tetrahydromethanopterin biosynthesis
PP_5332	PWY-2723	trehalose degradation V
PP_5332	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
PP_5332	PWY-5661	GDP-glucose biosynthesis
PP_5332	PWY-5940	streptomycin biosynthesis
PP_5332	PWY-621	sucrose degradation III (sucrose invertase)
PP_5332	PWY-622	starch biosynthesis
PP_5332	PWY-6731	starch degradation III
PP_5332	PWY-6737	starch degradation V
PP_5332	PWY-6981	chitin biosynthesis
PP_5332	PWY-7238	sucrose biosynthesis II
PP_5332	PWY-7343	UDP-glucose biosynthesis
PP_5336	PWY-6123	inosine-5'-phosphate biosynthesis I
PP_5336	PWY-7234	inosine-5'-phosphate biosynthesis III
PP_5338	PWY-5392	reductive TCA cycle II
PP_5338	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
PP_5338	PWY-5690	TCA cycle II (plants and fungi)
PP_5338	PWY-5913	TCA cycle VI (obligate autotrophs)
PP_5338	PWY-6728	methylaspartate cycle
PP_5338	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
PP_5338	PWY-7254	TCA cycle VII (acetate-producers)
PP_5338	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
PP_5351	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
PP_5357	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
PP_5357	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
PP_5366	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
PP_5366	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
PP_5389	PWY-6825	phosphatidylcholine biosynthesis V
PP_5409	PWY-6749	CMP-legionaminate biosynthesis I
PP_5411	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
PP_5413	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
PP_5415	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis