RHE_PA00001 1697 .. 1714 + -3.3 -3.71848 AGGTATACGACCTCG TCCTGGC CGGC GCCGGAA TTCTTGGTGCGGCCG 52 464 RHE_PA00003 NONE RHE_PA00004 NONE RHE_PA00005 6475 .. 6487 + -9.1 -2.70115 ATCAGATTAGGGAGG GAGCG ATG CGCTC GTCTGTTTTCATTTC 59 45 RHE_PA00006 8075 .. 8087 + -7.7 -3.08133 ACCATCTGCTGTCGC CGTTG CGT CAACG TTCGGTGCCTGGATG 57 460 RHE_PA00013 16677 .. 16690 + -6.7 -2.57244 GACTGTCAGCCGGCT TGCGA TATC TCGCA TCAATTCCTCGCTAA 48 495 RHE_PA00022 NONE RHE_PA00023 27255 .. 27268 + -3.7 -2.6583 GAAGCACGGGGACAG GCGGC ATGA GCGGC TCGGTTTACGATATC 42 52 RHE_PA00024 28239 .. 28262 + -5.8 -3.14881 TGACAGAAGTGGGAA GCGGCGGCGC AACC GCGATGCCCC TTCCTCAGACACTTC 52 41 RHE_PA00025 29084 .. 29098 + -7.8 -2.87564 ACGGAGTTAACACCC CCATGG CGA CCGTGG TATATCAGCGCATCG 54 83 RHE_PA00026 NONE RHE_PA00027 32285 .. 32316 + -2.1 -2.64794 CGCAAACGGCTTTTT CGTAGGCGGCG-TG CCGGT CATCGCCGCCATCA TCATATGGCATTGGA 38 43 RHE_PA00028 33578 .. 33588 + -4.6 -3.9122 TGGTCTCCTGGGCGT TGGC CGC GCCG TTGTTTAAGCGCCTG 59 415 repAa2 NONE repBa2 38231 .. 38258 + -5.5 -3.05384 CGAGAAATGGAAAAA GGGCCTATCGA CTGCAA TCGACAGACCC TTCAATCACGGCCAA 50 419 repCa2 39944 .. 39959 + -5.4 -4.0162 GTCGTATTACCAACA CGTGGT GAAG ATCACG TTTCTCCTCTCGAAA 62 258 RHE_PA00036 40753 .. 40774 + -3.7 -3.32946 CAGGAGGTGCTGAAA CATGACCCGC TGG GCG-GTCATC TGTTCTGCTTCAGGG 48 127 RHE_PA00037 NONE RHE_PA00038 NONE RHE_PA00039 43865 .. 43875 + -2.4 -2.69964 TGCCTTGATGGATCG CGCC TGA GGGG TAATGTGATTGAAAG 38 53 virF1 44615 .. 44648 + -11 -3.90291 AAACAAAGAGCTAAA GCGCGTCGCATGAA TCAAGT TTGACGCGACGCGC TTTAGTTGCAAACAT 83 119 virA 47678 .. 47707 + -9.3 -2.98823 ATCAGGACACAGGGT GCTATCCGGTG ATTTCCCG CACCGGAGAGC TGTGTCTCCAAAGGG 61 14 virB1a 48681 .. 48702 + -5.1 -3.39505 TCGCGCTCTCGAACG CCGTGATTCG CGC CGTATC-CGG TTCTGCATCTAGCAT 54 80 virB3a NONE virB4a NONE virB5a NONE virB6a 53154 .. 53166 + -2.7 -2.59267 CGCCAAAGGAGGACT CAATG AAA TATTG CTTGCTGTGCTTGGC 40 53 virB7a NONE virB8a NONE virB9a NONE virB10a NONE virB11a 57121 .. 57131 + -4 -3.31915 ATGTATCGGGTTATG TTTG TAA CAAA TCATTTTTATGCACG 48 70 virG 57937 .. 57952 + -9 -2.60508 TAGCAGCCATCCGGC GGTTCG ATCC CGAACC AATTTTTCCCGCGTC 59 48 RHE_PA00056 61318 .. 61332 + -7.8 -2.61264 GACGATCTGAGGAAG GCGCTT TCA GAGCGC ATTCTCCATGCCGAG 53 396 RHE_PA00058 63164 .. 63182 + -5.2 -4.25283 TTCGGACACGCACCT GCTCGGAT CTC GTCCGAAC TTTTCATCCGGCGCT 67 76 virE1 NONE virE2 NONE virE3 68546 .. 68569 + -8.2 -3.05819 TGCTCATGCGTGAGG GTCGCCTTGTG AAC CACAAG-CGGC TCTTCCGGCTCTATC 60 355 RHE_PA00066 71440 .. 71453 + -3.7 -2.55238 TTGGCGTCCCACAGA CTGGC GTCT GCCCG CTCATTTGTTTTCGT 41 292 virD1 72109 .. 72126 + -2.5 -3.08798 TTGCAGCGCTGACGT GGCACCC GCCC GGGAGCA TGTTCGATGCCGGAT 42 29 virD2 73703 .. 73713 + -2.4 -2.7386 AAGGTGATTTCCGCG CCGC CAT GCAG TACTTGCGCTCGCTT 39 351 virD4 77470 .. 77480 + -3.2 -4.09243 CCTGAGCGATGATCT CCTA ATA TGGG TTTTGAAAGCGTCTG 58 216 RHE_PA00072 NONE RHE_PA00073 81359 .. 81379 + -3.9 -3.59979 AGGGGCGAGCAGACG CTGGTGGAA TTG TCCCAGCAG TTTGACGTGCACGCC 52 256 RHE_PA00074 81990 .. 82012 + -9.8 -2.72471 TCTATCTCTGCGCCG TCGTCGACTG GTT CAGTCGTCGG GTTCTGTCGTGGCGG 62 303 RHE_PA00077 86913 .. 86926 + -9.5 -4.13767 GAGGATTTTTCGGCG GCCGC CCGC GCGGC TTTTGAGGTGGGGCG 80 104 RHE_PA00080 NONE RHE_PA00081 90301 .. 90311 + -6.8 -3.31322 GACTTGATCACTCGT CGAC CTC GTCG TTGTCGCCCATTGGA 56 381 RHE_PA00082 NONE RHE_PA00083 NONE RHE_PA00084 93167 .. 93194 + -3.2 -2.5547 CCGGCAAAAGCTCGA TGCGAGGCCGCC TGAT GGCGCGCTCGAG GTTCATCTACACACT 39 11 RHE_PA00085 93947 .. 93961 + -2.8 -3.71873 ATATTCCGCCGCTTT GCGT GGCCTTG ACGC TTTGGCTGTCGATAA 53 486 otsAa 97986 .. 98006 + -5.4 -3.17725 ATCTAAAAGACCCAT GACTGCCT CCAAA AGACAGTC TTGAATCTGATTTGC 50 292 ocs 99288 .. 99304 + -5.1 -4.08692 CCAGAAGTACCGAAA CACAATC TAC GTTTGTG TTTTCGCGGAAGTTA 64 42 RHE_PA00089 101018 .. 101028 + -5.4 -3.59979 TTCGCTGGCAATAAG TGGA CGT TCCA TTTGCCGTCGCACCA 56 412 RHE_PA00090 NONE RHE_PA00091 102338 .. 102350 + -3.3 -3.54459 GAAAACTCTAGCATC CGGTG GTC CAACG TTTGGGAGCGGTTCA 50 50 RHE_PA00092 103495 .. 103521 + -10.8 -3.58343 GGTCGGAAGGGGATA TCAGCGTGCCAC AGC GGGGCAGGCTGA TTTGGGGATCATCGC 74 134 RHE_PA00096 106736 .. 106752 + -6.5 -3.39895 GCTCGACAACTTGGC TCGCGAA GCT TCCGCGA TTGGTTCATCGACGC 58 207 kupa 115198 .. 115216 + -8.2 -2.78996 TAAAAAGATCATTTT TTCAACAG TTG CTGTTGGA CTTTACCTACGGATG 57 383 RHE_PA00108 117332 .. 117351 + -4.9 -4.10161 GCCCCATGCACGGCC CGGGTGG AATTGC CCAACCG TTTTACCCGCTCGTG 61 43 RHE_PA00110 119263 .. 119297 + -12.8 -3.06261 TGCCTGAGGGCCATC AGTGTCGGTCGTTGGT CTC GCCAGCGGCCGGCACC TGTTCAGGCTTGGAC 76 34 RHE_PA00112 120278 .. 120308 + -10.3 -4.66609 CGGCGCCAAAGATAA GCCGGTTGCAGGC ATCGA GCCTTCCGCCGGC TTTTTCGGTGCGATA 93 77 RHE_PA00113 120699 .. 120721 + -15.6 -2.86449 GGCATCATCGACGCC GAGCCGCCTT TCT GAGGCGGCTC TCATTCTGCTGGAAT 82 11 RHE_PA00118 125866 .. 125892 + -6.5 -4.4595 AAAAGTCGTCATCAA ACCGC-CCGAGC TTGG GTTCGGCGCGGC TTTTACCTTTTCTGG 74 164 RHE_PA00119 127957 .. 127967 + -8.2 -3.66874 TGAAGTCCCCGGATC CCCG GAT CGGG TTTCAATCAAATTAA 66 163 RHE_PA00122 131431 .. 131455 + -11.4 -2.62263 GCCGGTTGCGGCGAT GGTCCCGGCA TAGTC TGCCGGGGTC TGATATCCGAGCGAT 67 215 RHE_PA00124 134214 .. 134224 + -2.4 -3.36803 GGCCGTTGAAGCTCT CGAC ATA GCCG TTCTGCATCGGCTTC 44 153 RHE_PA00125 135922 .. 135934 + -2.6 -3.9377 GCGATAACGACCTGC TGCC AAAAC GGCG TTTCATTCCGATTAT 54 236 virB2a 138726 .. 138736 + -3.2 -4.04318 GGGTGCCGCTAACGT TGGC CGG GCTA TTTATGATGTCTGCC 58 101 RHE_PA00129 139482 .. 139517 + -14 -2.88427 CGCTTTCCGCAAGCC CGCTTCAAGGGCGTCG GCGA CGTCGGTCTTGAAGCG TCTCTCCCGGATCTT 79 173 RHE_PA00130 140282 .. 140300 + -10.2 -3.62224 CCGCCGATCGATCGT CGGCGTCG ATT CCACGCCG TTCTTGACGACATGT 71 73 RHE_PA00132 141897 .. 141940 + -5.8 -3.53012 AGGCGATGGTTGTTT TCCTCC-CCGTTGCGGCCGTG CAT CCTGGCGGCGACGGCGGCCGA TTTGAGGGCGAGGCG 55 416 RHE_PA00135 143835 .. 143854 + -4.9 -2.64794 ATGATCCCCAAATCA GCCTGCC CGCTGT GGCACGC TGATATCCCCTTCCG 43 3 RHE_PA00136 144588 .. 144611 + -12.4 -3.55071 ACCTGCAACGAGATG CAGGGGCTCC TTCG GGGGCCTCTG TTTCAACGGCTCTGC 79 111 RHE_PA00137 148012 .. 148025 + -3.7 -5.42259 AGTTTGCGCGCCAGG GCCAC TATC GCGGC TTTTTTTAAGCGTCC 87 446 RHE_PA00139 NONE RHE_PA00140 152020 .. 152057 + -7.1 -2.52464 CCCTTCCCCCCCTTC GCGTTCCTCGA-CTGCC CCTTGC GGCAGATCGATGA-CGC TCGCTTACAAGGAGC 50 114 RHE_PA00141 157163 .. 157212 + -13.5 -4.08216 GAGGGCTTATCCGCC TCGGAAGCGGCCTGAGGTCCGACG CCA TGCCGGACCTCCGTCCGCT-CTGG TTTTGGAAGCGCTGC 95 11 RHE_PA00142 NONE RHE_PA00143 159517 .. 159541 + -20 -4.05788 TCTCCGCTTGACCTT CCGCCGCCGG TCCTC CCGGCGGCGG TTTCGTTTCCACCAC 100 56 RHE_PA00144 160052 .. 160063 + -4.4 -3.35073 GAAGGGAGGGCTGCA GCAT GACT ATGC TTCCTTCGCAATCCT 49 20 RHE_PA00145 160918 .. 160935 + -2.6 -2.63596 TCCAGCTTCGCCGCA TGGCGC GGGAGG GCGGCA TGATGTCCAATCCCG 38 5 RHE_PA00146 NONE RHE_PA00147 161911 .. 161923 + -9.1 -3.01712 CGCGTGCTCTATCGA GGGCA GTG TGCCC TCTTCGCCCGCAAAC 61 238 RHE_PA00148 162698 .. 162730 + -17.8 -2.64616 CTCCGATAAACGCGA GAACGGCCGGTTCC CGGGC GGAGCCGGCTGTTC TCGTGTCGCTGACAC 86 70 ardCa 164342 .. 164358 + -13.7 -3.14132 GAAACTTTCTTCCCC TGGCGGC GGC GCCGCCA TTCCTCGCGCGGCAA 79 492 RHE_PA00151 164898 .. 164928 + -24.1 -4.66609 CGGCCACAAAGACAA GCAGGCGGCAGGC ATCGA GCCTGCCGCCTGC TTTTTCGGTGCGATG 100 77 RHE_PA00152 165319 .. 165341 + -15.6 -2.86747 GGCACCATCGAAGCC GAGCCGCCTT TCT GAGGCGGCTC TCATTCTGCTGGATC 82 11 RHE_PA00153 166192 .. 166209 + -8.3 -3.35992 GCTCGACCATCCGGA GGGCGGC GACA GCGGCCC TTCGTTGAGATGCCT 62 56 traAa NONE traF NONE traB NONE traH 176440 .. 176463 + -7.4 -3.34895 GAGAACAGCGTCCTC GCCATCGAGG ATCA CTTCGATGAC TTCGTTGACCATAGC 58 85 traM 178332 .. 178354 + -2.7 -3.3197 GCTGCGGCACGGACT GG-GCGTCAA ACTT TTCACGCGCC TTGTCGAGATAGTGT 44 79 repAa1 191756 .. 191791 + -4.1 -3.53012 CAAAACGCCGGCAGG C-TCGCCAGTTGTTGGG AGCT CCCAACAG-TGCCGAAG TTTCGAGCGCAAAGA 50 59 repBa1 NONE repCa1 NONE traIa NONE trbB NONE trbC NONE trbD 187861 .. 187875 - -3.4 -3.01712 GCCTGCCCCTCAATA CCGGCG CCA CGGCGA GGAGGTCGCCTTGTA 42 5 trbE NONE trbJ NONE trbL NONE trbF NONE trbG NONE trbH NONE trbI 179899 .. 179916 - -4.1 -4.13014 CTGAGAGCGGGAAAA GACCGACA TGC TG-CGGCC TCCGCTATCGACGCG 60 79 cinRa 179061 .. 179078 - -2.6 -2.52795 AATCCCCCGAACCGA TGCCCC TAACTT GGGGTA CCCACGTGAGGCGTG 38 13 traR 177966 .. 177982 - -7.2 -2.78216 GACGGGGATGAAGGA CGCCAG CTTAT CCGGCG CAGACGAAACAAACG 51 325 RHE_PA00165 177410 .. 177425 - -7.6 -2.82623 TGGTGGTCATAATCA TTCTCC TTGT GGAGAA TATATAATACAGCTC 54 108 RHE_PA00164 NONE RHE_PA00163 176056 .. 176066 - -3.2 -4.08216 CGATCCTTGCGAAAA CCTC CGC AAGG GAACGGCGATGTTCG 58 357 traCa NONE traDa NONE traGa 167933 .. 167950 - -2.5 -2.74799 GAGAATTCCCGAAAT CCCGCCC TGTC GTGCGGC CGCTATGCTGATTTC 39 52 RHE_PA00155 NONE RHE_PA00154 166607 .. 166628 - -3.7 -3.16055 GAAACTCGCGATCAA GATCCCG TTCTTCGT CGAGATC GAAGTGTCCTTCGAG 46 98 RHE_PA00150 163570 .. 163586 - -2.1 -3.18383 ACCTTGAGTCATGAA GTCACCC ATT GGACGGC GCCGGCGCATCGCCT 44 367 RHE_PA00138 147480 .. 147492 - -3.3 -4.91459 CAACAGCGACAAAAA TGGCT ATA AGCCG AGAGGTCGCAAGCCC 76 460 RHE_PA00133 141372 .. 141388 - -7.9 -3.05816 CGATTGCTGACCGAA GACGCGG TAC CGGCGTC CGCTCCGGGCAGCGC 57 374 RHE_PA00131 NONE RHE_PA00127 136517 .. 136532 - -6.8 -3.61517 ATTTTTTTGCAAGAA GCTCGCG GAG CGCG-GC CGCATCCAGCAACTG 60 388 RHE_PA00126 135890 .. 135909 - -11.4 -3.82484 ACATCATAATTCAAA CGCATCGG GAGA CCGACGCG ATAACGACCTGCTGC 80 62 RHE_PA00123 131209 .. 131220 - -4.4 -2.90392 TATTTCTCAAGCATA TGCA TCGC TGCA GCCGTCATCTTCTGG 46 398 RHE_PA00121 130231 .. 130246 - -4.6 -3.37959 GAACCGTAAGAGCAA GACCCC ATCT GGCGTC GATAACCTTGGCCCC 52 514 RHE_PA00120 128309 .. 128319 - -3.2 -5.1101 GGATCATTTAAAAAA CAAC GTG GTCG ACCCTTGACAGGTGG 77 69 RHE_PA00117 NONE RHE_PA00116 122438 .. 122488 - -12.5 -2.71731 GCGACGTCGGAATGA CCGGCTCAACCTGTGGCCGCGTTC ATCA GCACGCGGCCACAAGGTGC-CCGT CATAGATTACGATGC 73 79 RHE_PA00115 121625 .. 121637 - -6.9 -2.59039 AATGATGGCGAGAAC GGCCC GCT GAGCC TCTTCCTTTCGACCT 50 113 RHE_PA00111 118736 .. 118747 - -3.6 -2.85545 TCTGCAAGAATACGA CGCC TTCC GGCA CTTCCTTGCTGTAAA 43 388 virF2 117591 .. 117601 - -3.2 -3.18264 TTCTCTATCCATCAA TCAG CCT CCGA TATGCATTGGATGTT 43 159 RHE_PA00107 NONE RHE_PA00106 115936 .. 115956 - -2.6 -3.80625 TTTTCACAAGCCAAA TC-CATGAC TTCG GTCACGCGA ACGCGCTGCAGACAG 51 87 RHE_PA00105 115084 .. 115094 - -4.6 -3.92592 AGCCTGAACAGGAAA GCAG ATA CCGC AGACAGCCGCTCGGA 59 171 RHE_PA00103 NONE RHE_PA00102 NONE RHE_PA00101 NONE RHE_PA00100 NONE RHE_PA00099 NONE RHE_PA00098 107413 .. 107440 - -3.2 -2.5547 AGTGTGTAGATGAAC CTCGAGCGCGCC ATCA GGCGGCCTCGCA TCGAGCTTTTGCCGG 39 11 RHE_PA00097 106942 .. 106954 - -6.9 -2.50545 CGTCGAGAAGAAATT GGCGA ACG CCGCC TTCCCAGGAGCGCAC 50 192 RHE_PA00095 NONE RHE_PA00094 NONE RHE_PA00093 102911 .. 102925 - -2.8 -3.71873 TTATCGACAGCCAAA GCGT CAAGGCC ACGC AAAGCGGCGGAATAT 52 449 RHE_PA00086 93240 .. 93256 - -4.4 -4.10161 CATGATCGGCGAAAA CCTCGA ACTGA TCGAAG AAGTGACCGCAAACT 64 132 RHE_PA00079 NONE RHE_PA00078 86468 .. 86491 - -5.2 -3.06133 GAACCGCCCACGGAA CTGCGA-CGCG GCA CACGGTCGCCG GCGCTACTATCGTGC 49 403 RHE_PA00076 85117 .. 85131 - -8.6 -3.50853 TCGGTGCAATGAGAA GGCATT TTG AATGCC TCTCGTACCTCGCGA 64 201 RHE_PA00071 77214 .. 77243 - -10.9 -3.9461 GTTGCGCAAGAACAA TTGCTGAAACG-GA TAA TCGCGCTTCAGCAA CGGTATAGGTCTGGC 85 486 RHE_PA00064 68965 .. 68981 - -2.9 -4.19704 TAAGCCGATCCAAAA TGCCTTC ATC GAAAGCT TCAATGGGCGGCTGC 61 132 RHE_PA00059 62994 .. 63012 - -3 -3.53224 CAGTTCCGGGTGAAA GCCTGTGT CCA ACTCACGC CCCCTCTACGCCGAT 49 325 virC1 NONE virC2 57699 .. 57721 - -5.5 -3.86346 GCATTCCTCGAGAAA CCGCGCGAT GTGTT ATCCCGCGA GCAGCTTCTGATTGC 61 300 RHE_PA00041 44609 .. 44654 - -15.6 -3.93868 GCGTTAAAACAAAGA GCTAAAGCGCGTCGCATGAA TCAAGT TTGACGCGACGCGCTTTAGT TGCAAACATTCCAAT 100 237 RHE_PA00032 35260 .. 35291 - -11 -2.82742 ACCTCGGCATAACCA TTTGCGAGGCACCAC TCG ATGATGCC-CGCAAA CCTGGTCAGCGTTAT 69 126 RHE_PA00031 34934 .. 34947 - -4.5 -3.06915 AGGTACTGTATTCAA GGCCGC CAA GCG-CC GCATCGGCTGGACGG 47 8 RHE_PA00030 NONE RHE_PA00029 33516 .. 33529 - -9.5 -2.71684 AAGGACCGAGAGAAG CGGGG CCTT CCCCG GACCGCCATCAAGCT 62 136 RHE_PA00021 23789 .. 23803 - -7.1 -2.87211 ACGCTCCTCCACAGA CGGAG GTACT CTCCG CCGATCTCCCTTGCC 51 204 xylBa 22260 .. 22305 - -8.3 -2.56596 CCTCGCAGTAACCCA CACGCTT-GCAAGCCATGCAGA CTA TCTGTTCAGCTTGCGAAGCGAG AGATAAACGTTTGCT 56 1 RHE_PA00019 21772 .. 21788 - -10.8 -2.63301 GAGACCGCGACAGCA CGCCCG CCGGC CGGGCG ATGAGGTTCCGCTGG 64 342 RHE_PA00018 19307 .. 19325 - -3.9 -3.83705 AAAATTACGAGTAAA CCTGT-AG TAGT CTGACAGG CCCTTCGCTTCGGCT 55 320 RHE_PA00017 NONE RHE_PA00016 NONE RHE_PA00015 NONE RHE_PA00014 15890 .. 15900 - -6.8 -3.14132 GCCGCCGCCGATTAA CGCT TGG AGCG CCGCCGCAGTCACGT 54 418 RHE_PA00012 NONE RHE_PA00011 13778 .. 13788 - -2.4 -3.39895 GCTTCGATCAATGAA CTGG TCT CCCG GATACAAATCAGGTG 46 452 RHE_PA00010 12654 .. 12676 - -8.5 -4.07568 TGCGGTCGCCCAAAA GCCT-CGATG GAAA CATCGGAGGC TTTTTGAGTTTTTAG 73 37 RHE_PA00009 10805 .. 10815 - -8.2 -3.04144 TCCTCAGTGGTAATA GCGG GGG CCGC GGATGTTGGAGTGAT 58 3 RHE_PA00008 9863 .. 9875 - -4.8 -3.79906 GTATGTCGACAACAA CAGC CGCTT GCTG ATAGGTTACGCGGGA 57 194 RHE_PA00007 7588 .. 7601 - -9.5 -3.17319 CGGAATTGAGCAACA GCGGC TGGT GCCGC AAAGCCGATGCGACT 66 58 intA 993 .. 1017 - -5.7 -4.67256 CAACAAATCACAAAA TCCTACTCG ATTGTTA CGAGAAGGA ATTCTGCCAGATCGC 75 347