Rfer_0001	SSF48295	TrpR-like
Rfer_0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0002	SSF55979	DNA clamp
Rfer_0003	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_0003	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0003	SSF56719	Type II DNA topoisomerase
Rfer_0004	SSF54631	CBS-domain pair
Rfer_0005	SSF55073	Nucleotide cyclase
Rfer_0007	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0007	SSF52210	Succinyl-CoA synthetase domains
Rfer_0007	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_0007	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_0010	SSF52833	Thioredoxin-like
Rfer_0013	SSF46785	"Winged helix" DNA-binding domain
Rfer_0013	SSF64288	Chorismate lyase-like
Rfer_0014	SSF48557	L-aspartase-like
Rfer_0016	SSF46689	Homeodomain-like
Rfer_0016	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_0017	SSF56796	Dehydroquinate synthase-like
Rfer_0018	SSF50129	GroES-like
Rfer_0018	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0019	SSF52317	Class I glutamine amidotransferase-like
Rfer_0022	SSF46785	"Winged helix" DNA-binding domain
Rfer_0022	SSF51206	cAMP-binding domain-like
Rfer_0023	SSF46955	Putative DNA-binding domain
Rfer_0024	SSF55008	HMA, heavy metal-associated domain
Rfer_0024	SSF56784	HAD-like
Rfer_0024	SSF81653	Calcium ATPase, transduction domain A
Rfer_0024	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_0027	SSF117856	AF0104/ALDC/Ptd012-like
Rfer_0028	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0029	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_0030	SSF116734	DNA methylase specificity domain
Rfer_0032	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0034	SSF55229	Cell division protein MinE topological specificity domain
Rfer_0035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0036	SSF63848	Cell-division inhibitor MinC, C-terminal domain
Rfer_0037	SSF48452	TPR-like
Rfer_0039	SSF52833	Thioredoxin-like
Rfer_0041	SSF82093	Heme chaperone CcmE
Rfer_0045	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0047	SSF47616	GST C-terminal domain-like
Rfer_0047	SSF52833	Thioredoxin-like
Rfer_0048	SSF53720	ALDH-like
Rfer_0049	SSF51905	FAD/NAD(P)-binding domain
Rfer_0050	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0051	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0052	SSF53474	alpha/beta-Hydrolases
Rfer_0053	SSF109709	KorB DNA-binding domain-like
Rfer_0053	SSF110849	ParB/Sulfiredoxin
Rfer_0054	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0055	SSF109604	HD-domain/PDEase-like
Rfer_0056	SSF49478	Cna protein B-type domain
Rfer_0058	SSF48452	TPR-like
Rfer_0059	SSF48695	Multiheme cytochromes
Rfer_0060	SSF46785	"Winged helix" DNA-binding domain
Rfer_0060	SSF51206	cAMP-binding domain-like
Rfer_0061	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0062	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_0062	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_0063	SSF50037	C-terminal domain of transcriptional repressors
Rfer_0064	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0067	SSF52833	Thioredoxin-like
Rfer_0068	SSF54626	Chalcone isomerase
Rfer_0076	SSF142433	CinA-like
Rfer_0077	SSF101307	YutG-like
Rfer_0078	SSF56024	Phospholipase D/nuclease
Rfer_0084	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_0084	SSF63380	Riboflavin synthase domain-like
Rfer_0085	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0086	SSF53092	Creatinase/prolidase N-terminal domain
Rfer_0086	SSF55920	Creatinase/aminopeptidase
Rfer_0087	SSF52833	Thioredoxin-like
Rfer_0088	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_0088	SSF52009	Phosphohistidine domain
Rfer_0088	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_0089	SSF53474	alpha/beta-Hydrolases
Rfer_0090	SSF47240	Ferritin-like
Rfer_0091	SSF57802	Rubredoxin-like
Rfer_0092	SSF51905	FAD/NAD(P)-binding domain
Rfer_0093	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0093	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rfer_0093	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_0094	SSF53933	Microbial ribonucleases
Rfer_0095	SSF52038	Barstar-related
Rfer_0096	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0097	SSF109998	Triger factor/SurA peptide-binding domain-like
Rfer_0097	SSF54534	FKBP-like
Rfer_0099	SSF56112	Protein kinase-like (PK-like)
Rfer_0101	SSF54427	NTF2-like
Rfer_0102	SSF140478	LemA-like
Rfer_0105	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
Rfer_0105	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Rfer_0106	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_0106	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_0106	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0107	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Rfer_0108	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_0108	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_0108	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0109	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
Rfer_0110	SSF81573	F1F0 ATP synthase subunit B, membrane domain
Rfer_0111	SSF81333	F1F0 ATP synthase subunit C
Rfer_0112	SSF81336	F1F0 ATP synthase subunit A
Rfer_0114	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_0115	SSF52833	Thioredoxin-like
Rfer_0116	SSF55073	Nucleotide cyclase
Rfer_0117	SSF140990	FtsH protease domain-like
Rfer_0117	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0119	SSF46785	"Winged helix" DNA-binding domain
Rfer_0119	SSF53850	Periplasmic binding protein-like II
Rfer_0120	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0120	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_0121	SSF50129	GroES-like
Rfer_0121	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0122	SSF53474	alpha/beta-Hydrolases
Rfer_0124	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0125	SSF53822	Periplasmic binding protein-like I
Rfer_0126	SSF50891	Cyclophilin-like
Rfer_0127	SSF160467	PH0987 N-terminal domain-like
Rfer_0127	SSF50891	Cyclophilin-like
Rfer_0129	SSF51230	Single hybrid motif
Rfer_0130	SSF88713	Glycoside hydrolase/deacetylase
Rfer_0131	SSF46785	"Winged helix" DNA-binding domain
Rfer_0131	SSF53850	Periplasmic binding protein-like II
Rfer_0132	SSF143968	UbiD C-terminal domain-like
Rfer_0132	SSF50475	FMN-binding split barrel
Rfer_0133	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rfer_0134	SSF55718	SCP-like
Rfer_0138	SSF51161	Trimeric LpxA-like enzymes
Rfer_0139	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_0139	SSF51556	Metallo-dependent hydrolases
Rfer_0140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0141	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0144	SSF159709	PhnH-like
Rfer_0146	SSF46785	"Winged helix" DNA-binding domain
Rfer_0146	SSF64288	Chorismate lyase-like
Rfer_0148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0149	SSF56317	Carbon-nitrogen hydrolase
Rfer_0150	SSF48371	ARM repeat
Rfer_0151	SSF46785	"Winged helix" DNA-binding domain
Rfer_0152	SSF54909	Dimeric alpha+beta barrel
Rfer_0153	SSF160379	SP0830-like
Rfer_0154	SSF109854	DinB/YfiT-like putative metalloenzymes
Rfer_0157	SSF56317	Carbon-nitrogen hydrolase
Rfer_0158	SSF53187	Zn-dependent exopeptidases
Rfer_0158	SSF55031	Bacterial exopeptidase dimerisation domain
Rfer_0159	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_0160	SSF46689	Homeodomain-like
Rfer_0160	SSF53697	SIS domain
Rfer_0161	SSF53850	Periplasmic binding protein-like II
Rfer_0162	SSF161098	MetI-like
Rfer_0163	SSF161098	MetI-like
Rfer_0164	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0165	SSF158694	UraD-Like
Rfer_0165	SSF53187	Zn-dependent exopeptidases
Rfer_0165	SSF55031	Bacterial exopeptidase dimerisation domain
Rfer_0166	SSF53187	Zn-dependent exopeptidases
Rfer_0166	SSF55031	Bacterial exopeptidase dimerisation domain
Rfer_0167	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_0169	SSF111369	HlyD-like secretion proteins
Rfer_0170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0172	SSF46626	Cytochrome c
Rfer_0177	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0178	SSF46785	"Winged helix" DNA-binding domain
Rfer_0180	SSF143100	TTHA1013/TTHA0281-like
Rfer_0180	SSF47598	Ribbon-helix-helix
Rfer_0181	SSF51905	FAD/NAD(P)-binding domain
Rfer_0181	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rfer_0183	SSF161098	MetI-like
Rfer_0184	SSF53850	Periplasmic binding protein-like II
Rfer_0185	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0186	SSF103473	MFS general substrate transporter
Rfer_0187	SSF52141	Uracil-DNA glycosylase-like
Rfer_0188	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_0189	SSF53067	Actin-like ATPase domain
Rfer_0190	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0191	SSF56601	beta-lactamase/transpeptidase-like
Rfer_0193	SSF52266	SGNH hydrolase
Rfer_0194	SSF56925	OMPA-like
Rfer_0195	SSF55821	YrdC/RibB
Rfer_0196	SSF51246	Rudiment single hybrid motif
Rfer_0196	SSF52440	PreATP-grasp domain
Rfer_0196	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_0197	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Rfer_0198	SSF48452	TPR-like
Rfer_0198	SSF52833	Thioredoxin-like
Rfer_0199	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_0199	SSF46548	alpha-helical ferredoxin
Rfer_0200	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_0202	SSF46785	"Winged helix" DNA-binding domain
Rfer_0202	SSF48008	GntR ligand-binding domain-like
Rfer_0203	SSF56104	SAICAR synthase-like
Rfer_0204	SSF51569	Aldolase
Rfer_0205	SSF50800	PK beta-barrel domain-like
Rfer_0205	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_0205	SSF52935	PK C-terminal domain-like
Rfer_0206	SSF103088	OmpA-like
Rfer_0207	SSF75217	alpha/beta knot
Rfer_0207	SSF88697	PUA domain-like
Rfer_0208	SSF46626	Cytochrome c
Rfer_0210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0211	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0214	SSF53822	Periplasmic binding protein-like I
Rfer_0215	SSF53474	alpha/beta-Hydrolases
Rfer_0216	SSF56801	Acetyl-CoA synthetase-like
Rfer_0217	SSF53720	ALDH-like
Rfer_0218	SSF51182	RmlC-like cupins
Rfer_0219	SSF47413	lambda repressor-like DNA-binding domains
Rfer_0219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0220	SSF52096	ClpP/crotonase
Rfer_0221	SSF47240	Ferritin-like
Rfer_0222	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_0222	SSF54862	4Fe-4S ferredoxins
Rfer_0222	SSF63380	Riboflavin synthase domain-like
Rfer_0223	SSF52096	ClpP/crotonase
Rfer_0224	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0224	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0225	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0226	SSF53901	Thiolase-like
Rfer_0228	SSF47240	Ferritin-like
Rfer_0230	SSF47413	lambda repressor-like DNA-binding domains
Rfer_0230	SSF51182	RmlC-like cupins
Rfer_0231	SSF51905	FAD/NAD(P)-binding domain
Rfer_0232	SSF53850	Periplasmic binding protein-like II
Rfer_0233	SSF161098	MetI-like
Rfer_0234	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0235	SSF46785	"Winged helix" DNA-binding domain
Rfer_0235	SSF54909	Dimeric alpha+beta barrel
Rfer_0236	SSF53850	Periplasmic binding protein-like II
Rfer_0237	SSF161098	MetI-like
Rfer_0238	SSF161098	MetI-like
Rfer_0239	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0240	SSF51905	FAD/NAD(P)-binding domain
Rfer_0240	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_0242	SSF48208	Six-hairpin glycosidases
Rfer_0244	SSF48695	Multiheme cytochromes
Rfer_0246	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0246	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0247	SSF46689	Homeodomain-like
Rfer_0247	SSF52172	CheY-like
Rfer_0247	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0248	SSF101898	NHL repeat
Rfer_0250	SSF48695	Multiheme cytochromes
Rfer_0252	SSF48695	Multiheme cytochromes
Rfer_0253	SSF48695	Multiheme cytochromes
Rfer_0254	SSF48452	TPR-like
Rfer_0254	SSF52833	Thioredoxin-like
Rfer_0255	SSF48695	Multiheme cytochromes
Rfer_0256	SSF101898	NHL repeat
Rfer_0258	SSF101898	NHL repeat
Rfer_0259	SSF48695	Multiheme cytochromes
Rfer_0260	SSF48695	Multiheme cytochromes
Rfer_0262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0262	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_0262	SSF75138	HprK N-terminal domain-like
Rfer_0263	SSF46785	"Winged helix" DNA-binding domain
Rfer_0264	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_0264	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_0265	SSF56935	Porins
Rfer_0266	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0267	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0269	SSF53822	Periplasmic binding protein-like I
Rfer_0270	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0271	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0272	SSF53901	Thiolase-like
Rfer_0273	SSF56801	Acetyl-CoA synthetase-like
Rfer_0274	SSF52096	ClpP/crotonase
Rfer_0275	SSF51556	Metallo-dependent hydrolases
Rfer_0276	SSF54862	4Fe-4S ferredoxins
Rfer_0277	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0278	SSF46785	"Winged helix" DNA-binding domain
Rfer_0279	SSF46785	"Winged helix" DNA-binding domain
Rfer_0280	SSF50022	ISP domain
Rfer_0280	SSF55961	Bet v1-like
Rfer_0281	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_0281	SSF54292	2Fe-2S ferredoxin-like
Rfer_0281	SSF63380	Riboflavin synthase domain-like
Rfer_0283	SSF46785	"Winged helix" DNA-binding domain
Rfer_0284	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0285	SSF55136	Probable bacterial effector-binding domain
Rfer_0288	SSF53822	Periplasmic binding protein-like I
Rfer_0291	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0292	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0294	SSF53213	LigB-like
Rfer_0295	SSF48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Rfer_0296	SSF46785	"Winged helix" DNA-binding domain
Rfer_0296	SSF53850	Periplasmic binding protein-like II
Rfer_0297	SSF46689	Homeodomain-like
Rfer_0297	SSF51182	RmlC-like cupins
Rfer_0298	SSF48264	Cytochrome P450
Rfer_0299	SSF54292	2Fe-2S ferredoxin-like
Rfer_0300	SSF51905	FAD/NAD(P)-binding domain
Rfer_0300	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rfer_0302	SSF51430	NAD(P)-linked oxidoreductase
Rfer_0303	SSF46689	Homeodomain-like
Rfer_0303	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_0304	SSF50129	GroES-like
Rfer_0304	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0305	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0306	SSF51395	FMN-linked oxidoreductases
Rfer_0307	SSF53474	alpha/beta-Hydrolases
Rfer_0308	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0309	SSF50129	GroES-like
Rfer_0309	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0310	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0311	SSF53474	alpha/beta-Hydrolases
Rfer_0313	SSF51395	FMN-linked oxidoreductases
Rfer_0314	SSF103473	MFS general substrate transporter
Rfer_0315	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0316	SSF54786	YcfA/nrd intein domain
Rfer_0318	SSF51905	FAD/NAD(P)-binding domain
Rfer_0319	SSF56925	OMPA-like
Rfer_0320	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0321	SSF56801	Acetyl-CoA synthetase-like
Rfer_0323	SSF53474	alpha/beta-Hydrolases
Rfer_0324	SSF52096	ClpP/crotonase
Rfer_0325	SSF46689	Homeodomain-like
Rfer_0325	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_0327	SSF47090	PGBD-like
Rfer_0327	SSF53955	Lysozyme-like
Rfer_0328	SSF109709	KorB DNA-binding domain-like
Rfer_0329	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0329	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_0330	SSF53213	LigB-like
Rfer_0331	SSF48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Rfer_0332	SSF51556	Metallo-dependent hydrolases
Rfer_0334	SSF53474	alpha/beta-Hydrolases
Rfer_0335	SSF103642	Sec-C motif
Rfer_0336	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0336	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0337	SSF89562	RraA-like
Rfer_0338	SSF51556	Metallo-dependent hydrolases
Rfer_0339	SSF51905	FAD/NAD(P)-binding domain
Rfer_0339	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_0340	SSF53850	Periplasmic binding protein-like II
Rfer_0341	SSF46785	"Winged helix" DNA-binding domain
Rfer_0341	SSF53850	Periplasmic binding protein-like II
Rfer_0342	SSF51430	NAD(P)-linked oxidoreductase
Rfer_0343	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0344	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_0344	SSF55021	ACT-like
Rfer_0346	SSF52768	Arginase/deacetylase
Rfer_0347	SSF51905	FAD/NAD(P)-binding domain
Rfer_0348	SSF46785	"Winged helix" DNA-binding domain
Rfer_0348	SSF53383	PLP-dependent transferases
Rfer_0349	SSF52317	Class I glutamine amidotransferase-like
Rfer_0350	SSF54368	Glutamine synthetase, N-terminal domain
Rfer_0350	SSF55931	Glutamine synthetase/guanido kinase
Rfer_0351	SSF53383	PLP-dependent transferases
Rfer_0352	SSF53850	Periplasmic binding protein-like II
Rfer_0353	SSF50331	MOP-like
Rfer_0353	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0354	SSF161098	MetI-like
Rfer_0355	SSF161098	MetI-like
Rfer_0356	SSF53720	ALDH-like
Rfer_0358	SSF103473	MFS general substrate transporter
Rfer_0360	SSF48452	TPR-like
Rfer_0361	SSF52151	FabD/lysophospholipase-like
Rfer_0362	SSF53784	Phosphofructokinase
Rfer_0364	SSF50341	CheW-like
Rfer_0364	SSF52172	CheY-like
Rfer_0365	SSF50685	Barwin-like endoglucanases
Rfer_0367	SSF81301	Nucleotidyltransferase
Rfer_0367	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rfer_0368	SSF51998	PFL-like glycyl radical enzymes
Rfer_0370	SSF102114	Radical SAM enzymes
Rfer_0371	SSF53822	Periplasmic binding protein-like I
Rfer_0372	SSF53720	ALDH-like
Rfer_0373	SSF53383	PLP-dependent transferases
Rfer_0374	SSF46785	"Winged helix" DNA-binding domain
Rfer_0374	SSF53850	Periplasmic binding protein-like II
Rfer_0379	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_0379	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_0379	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_0380	SSF111369	HlyD-like secretion proteins
Rfer_0382	SSF55469	FMN-dependent nitroreductase-like
Rfer_0383	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_0384	SSF47336	ACP-like
Rfer_0385	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rfer_0385	SSF51230	Single hybrid motif
Rfer_0385	SSF52777	CoA-dependent acyltransferases
Rfer_0386	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_0386	SSF52922	TK C-terminal domain-like
Rfer_0387	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_0388	SSF56801	Acetyl-CoA synthetase-like
Rfer_0389	SSF54631	CBS-domain pair
Rfer_0391	SSF56112	Protein kinase-like (PK-like)
Rfer_0392	SSF53271	PRTase-like
Rfer_0393	SSF46626	Cytochrome c
Rfer_0394	SSF53271	PRTase-like
Rfer_0395	SSF53474	alpha/beta-Hydrolases
Rfer_0396	SSF102114	Radical SAM enzymes
Rfer_0397	SSF143447	AMMECR1-like
Rfer_0399	SSF46785	"Winged helix" DNA-binding domain
Rfer_0399	SSF53850	Periplasmic binding protein-like II
Rfer_0400	SSF46689	Homeodomain-like
Rfer_0400	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_0401	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0402	SSF53474	alpha/beta-Hydrolases
Rfer_0403	SSF53187	Zn-dependent exopeptidases
Rfer_0404	SSF51395	FMN-linked oxidoreductases
Rfer_0405	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0406	SSF53474	alpha/beta-Hydrolases
Rfer_0407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0409	SSF46689	Homeodomain-like
Rfer_0409	SSF51182	RmlC-like cupins
Rfer_0410	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0411	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_0411	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_0411	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_0412	SSF111369	HlyD-like secretion proteins
Rfer_0413	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_0414	SSF52833	Thioredoxin-like
Rfer_0415	SSF158442	DsbB-like
Rfer_0418	SSF47240	Ferritin-like
Rfer_0418	SSF56784	HAD-like
Rfer_0418	SSF81653	Calcium ATPase, transduction domain A
Rfer_0418	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_0422	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0422	SSF52172	CheY-like
Rfer_0423	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0423	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0428	SSF56112	Protein kinase-like (PK-like)
Rfer_0429	SSF46565	Chaperone J-domain
Rfer_0430	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0430	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0433	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0434	SSF103473	MFS general substrate transporter
Rfer_0435	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0437	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0438	SSF53822	Periplasmic binding protein-like I
Rfer_0440	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_0441	SSF46785	"Winged helix" DNA-binding domain
Rfer_0441	SSF53850	Periplasmic binding protein-like II
Rfer_0442	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0443	SSF51658	Xylose isomerase-like
Rfer_0444	SSF53639	AraD/HMP-PK domain-like
Rfer_0445	SSF142764	YgbK-like
Rfer_0446	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0446	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0447	SSF46785	"Winged helix" DNA-binding domain
Rfer_0447	SSF48008	GntR ligand-binding domain-like
Rfer_0451	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0452	SSF53720	ALDH-like
Rfer_0453	SSF51569	Aldolase
Rfer_0454	SSF51569	Aldolase
Rfer_0454	SSF89000	post-HMGL domain-like
Rfer_0455	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0455	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_0456	SSF143975	IlvD/EDD N-terminal domain-like
Rfer_0456	SSF52016	LeuD/IlvD-like
Rfer_0457	SSF46785	"Winged helix" DNA-binding domain
Rfer_0457	SSF53850	Periplasmic binding protein-like II
Rfer_0458	SSF141868	EAL domain-like
Rfer_0458	SSF55073	Nucleotide cyclase
Rfer_0458	SSF55781	GAF domain-like
Rfer_0458	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0459	SSF47819	HRDC-like
Rfer_0459	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0460	SSF82282	Homocysteine S-methyltransferase
Rfer_0461	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rfer_0462	SSF46785	"Winged helix" DNA-binding domain
Rfer_0462	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_0463	SSF75169	DsrEFH-like
Rfer_0464	SSF53383	PLP-dependent transferases
Rfer_0465	SSF49785	Galactose-binding domain-like
Rfer_0466	SSF47644	Methionine synthase domain
Rfer_0466	SSF51717	Dihydropteroate synthetase-like
Rfer_0466	SSF52242	Cobalamin (vitamin B12)-binding domain
Rfer_0466	SSF56507	Methionine synthase activation domain-like
Rfer_0467	SSF103473	MFS general substrate transporter
Rfer_0468	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0469	SSF141868	EAL domain-like
Rfer_0469	SSF55073	Nucleotide cyclase
Rfer_0469	SSF55781	GAF domain-like
Rfer_0470	SSF50341	CheW-like
Rfer_0471	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0471	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_0472	SSF54913	GlnB-like
Rfer_0473	SSF111352	Ammonium transporter
Rfer_0474	SSF46785	"Winged helix" DNA-binding domain
Rfer_0474	SSF53850	Periplasmic binding protein-like II
Rfer_0475	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0476	SSF51395	FMN-linked oxidoreductases
Rfer_0477	SSF48452	TPR-like
Rfer_0477	SSF52172	CheY-like
Rfer_0478	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0478	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0479	SSF63829	Calcium-dependent phosphotriesterase
Rfer_0480	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_0480	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_0481	SSF54862	4Fe-4S ferredoxins
Rfer_0482	SSF51569	Aldolase
Rfer_0483	SSF53955	Lysozyme-like
Rfer_0483	SSF81901	HCP-like
Rfer_0484	SSF52833	Thioredoxin-like
Rfer_0485	SSF54427	NTF2-like
Rfer_0486	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0487	SSF103473	MFS general substrate transporter
Rfer_0488	SSF50621	Alanine racemase C-terminal domain-like
Rfer_0488	SSF51419	PLP-binding barrel
Rfer_0490	SSF46565	Chaperone J-domain
Rfer_0490	SSF49493	HSP40/DnaJ peptide-binding domain
Rfer_0492	SSF56784	HAD-like
Rfer_0492	SSF81653	Calcium ATPase, transduction domain A
Rfer_0492	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rfer_0492	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_0493	SSF56784	HAD-like
Rfer_0493	SSF81653	Calcium ATPase, transduction domain A
Rfer_0493	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_0494	SSF160113	YegP-like
Rfer_0495	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_0496	SSF160240	Cation efflux protein cytoplasmic domain-like
Rfer_0496	SSF161111	Cation efflux protein transmembrane domain-like
Rfer_0497	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_0497	SSF54292	2Fe-2S ferredoxin-like
Rfer_0497	SSF63380	Riboflavin synthase domain-like
Rfer_0499	SSF48695	Multiheme cytochromes
Rfer_0500	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0500	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_0502	SSF81342	Transmembrane di-heme cytochromes
Rfer_0503	SSF52172	CheY-like
Rfer_0504	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0504	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0506	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rfer_0508	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0509	SSF158472	HAMP domain-like
Rfer_0509	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0509	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0510	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0510	SSF52172	CheY-like
Rfer_0511	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0512	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0513	SSF51161	Trimeric LpxA-like enzymes
Rfer_0513	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0514	SSF51445	(Trans)glycosidases
Rfer_0515	SSF51011	Glycosyl hydrolase domain
Rfer_0515	SSF51445	(Trans)glycosidases
Rfer_0515	SSF81296	E set domains
Rfer_0516	SSF103473	MFS general substrate transporter
Rfer_0518	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_0518	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_0519	SSF111352	Ammonium transporter
Rfer_0523	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_0523	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_0525	SSF56931	Outer membrane phospholipase A (OMPLA)
Rfer_0527	SSF56935	Porins
Rfer_0528	SSF56935	Porins
Rfer_0529	SSF55326	PurM N-terminal domain-like
Rfer_0529	SSF56042	PurM C-terminal domain-like
Rfer_0531	SSF110069	ApaG-like
Rfer_0532	SSF51366	Ribulose-phoshate binding barrel
Rfer_0534	SSF54523	Pili subunits
Rfer_0535	SSF54523	Pili subunits
Rfer_0536	SSF54523	Pili subunits
Rfer_0537	SSF54523	Pili subunits
Rfer_0538	SSF54523	Pili subunits
Rfer_0539	SSF53067	Actin-like ATPase domain
Rfer_0543	SSF160246	EspE N-terminal domain-like
Rfer_0543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0545	SSF56801	Acetyl-CoA synthetase-like
Rfer_0548	SSF51905	FAD/NAD(P)-binding domain
Rfer_0551	SSF48029	FliG
Rfer_0553	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0557	SSF101801	Surface presentation of antigens (SPOA)
Rfer_0557	SSF103039	CheC-like
Rfer_0558	SSF101801	Surface presentation of antigens (SPOA)
Rfer_0563	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0563	SSF52172	CheY-like
Rfer_0564	SSF52172	CheY-like
Rfer_0564	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0566	SSF52172	CheY-like
Rfer_0567	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rfer_0567	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0567	SSF50341	CheW-like
Rfer_0567	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0568	SSF50341	CheW-like
Rfer_0569	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rfer_0569	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0570	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rfer_0571	SSF52172	CheY-like
Rfer_0571	SSF52738	Methylesterase CheB, C-terminal domain
Rfer_0572	SSF51905	FAD/NAD(P)-binding domain
Rfer_0572	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_0573	SSF46785	"Winged helix" DNA-binding domain
Rfer_0574	SSF82784	OsmC-like
Rfer_0576	SSF56112	Protein kinase-like (PK-like)
Rfer_0577	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0577	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0577	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0578	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0578	SSF52172	CheY-like
Rfer_0579	SSF109755	PhoU-like
Rfer_0580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0581	SSF161098	MetI-like
Rfer_0582	SSF161098	MetI-like
Rfer_0583	SSF53850	Periplasmic binding protein-like II
Rfer_0584	SSF46689	Homeodomain-like
Rfer_0590	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Rfer_0590	SSF50447	Translation proteins
Rfer_0590	SSF55186	ThrRS/AlaRS common domain
Rfer_0590	SSF55681	Class II aaRS and biotin synthetases
Rfer_0591	SSF46785	"Winged helix" DNA-binding domain
Rfer_0591	SSF53383	PLP-dependent transferases
Rfer_0592	SSF53383	PLP-dependent transferases
Rfer_0593	SSF50331	MOP-like
Rfer_0593	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0594	SSF53850	Periplasmic binding protein-like II
Rfer_0595	SSF161098	MetI-like
Rfer_0596	SSF161098	MetI-like
Rfer_0597	SSF52768	Arginase/deacetylase
Rfer_0598	SSF53720	ALDH-like
Rfer_0599	SSF81342	Transmembrane di-heme cytochromes
Rfer_0600	SSF47175	Cytochromes
Rfer_0601	SSF53062	PTS system fructose IIA component-like
Rfer_0602	SSF55594	HPr-like
Rfer_0603	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Rfer_0603	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_0603	SSF52009	Phosphohistidine domain
Rfer_0606	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_0606	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_0608	SSF52096	ClpP/crotonase
Rfer_0609	SSF53328	Formyltransferase
Rfer_0609	SSF55021	ACT-like
Rfer_0610	SSF159501	EreA/ChaN-like
Rfer_0613	SSF56529	FAH
Rfer_0615	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
Rfer_0615	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_0617	SSF110087	DR1885-like metal-binding protein
Rfer_0618	SSF110087	DR1885-like metal-binding protein
Rfer_0619	SSF56935	Porins
Rfer_0620	SSF103501	Respiratory nitrate reductase 1 gamma chain
Rfer_0623	SSF143120	YefM-like
Rfer_0624	SSF88723	PIN domain-like
Rfer_0626	SSF51713	tRNA-guanine transglycosylase
Rfer_0627	SSF109604	HD-domain/PDEase-like
Rfer_0628	SSF111337	QueA-like
Rfer_0629	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0630	SSF64518	Phase 1 flagellin
Rfer_0631	SSF64518	Phase 1 flagellin
Rfer_0633	SSF101116	Flagellar export chaperone FliS
Rfer_0637	SSF54631	CBS-domain pair
Rfer_0641	SSF46565	Chaperone J-domain
Rfer_0642	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0644	SSF56784	HAD-like
Rfer_0645	SSF50447	Translation proteins
Rfer_0645	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0645	SSF54980	EF-G C-terminal domain-like
Rfer_0646	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0647	SSF75011	3-carboxy-cis,cis-mucoante lactonizing enzyme
Rfer_0649	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_0650	SSF56529	FAH
Rfer_0651	SSF52833	Thioredoxin-like
Rfer_0652	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0652	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_0653	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0654	SSF51730	FAD-linked oxidoreductase
Rfer_0656	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0657	SSF52788	Phosphotyrosine protein phosphatases I
Rfer_0660	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0661	SSF56935	Porins
Rfer_0662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0663	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0664	SSF88713	Glycoside hydrolase/deacetylase
Rfer_0665	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_0667	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0667	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0667	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Rfer_0668	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0669	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0669	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_0670	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0671	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0671	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_0672	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0673	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0673	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0673	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Rfer_0674	SSF54001	Cysteine proteinases
Rfer_0675	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0676	SSF56801	Acetyl-CoA synthetase-like
Rfer_0678	SSF88713	Glycoside hydrolase/deacetylase
Rfer_0680	SSF48230	Chondroitin AC/alginate lyase
Rfer_0682	SSF49313	Cadherin-like
Rfer_0683	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0683	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_0684	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0686	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_0687	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0688	SSF51161	Trimeric LpxA-like enzymes
Rfer_0689	SSF53383	PLP-dependent transferases
Rfer_0690	SSF51161	Trimeric LpxA-like enzymes
Rfer_0690	SSF51182	RmlC-like cupins
Rfer_0692	SSF48452	TPR-like
Rfer_0693	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_0694	SSF53474	alpha/beta-Hydrolases
Rfer_0696	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0697	SSF53474	alpha/beta-Hydrolases
Rfer_0698	SSF47336	ACP-like
Rfer_0699	SSF56801	Acetyl-CoA synthetase-like
Rfer_0700	SSF50621	Alanine racemase C-terminal domain-like
Rfer_0700	SSF51419	PLP-binding barrel
Rfer_0703	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0703	SSF55781	GAF domain-like
Rfer_0703	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0704	SSF46689	Homeodomain-like
Rfer_0704	SSF52172	CheY-like
Rfer_0704	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0705	SSF48452	TPR-like
Rfer_0705	SSF81901	HCP-like
Rfer_0708	SSF53795	PEP carboxykinase-like
Rfer_0710	SSF50494	Trypsin-like serine proteases
Rfer_0711	SSF51182	RmlC-like cupins
Rfer_0711	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0712	SSF51161	Trimeric LpxA-like enzymes
Rfer_0712	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0713	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0714	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0715	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0716	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_0717	SSF74650	Galactose mutarotase-like
Rfer_0720	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0721	SSF52161	Ribosomal protein L13
Rfer_0722	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_0725	SSF89360	HesB-like domain
Rfer_0726	SSF53067	Actin-like ATPase domain
Rfer_0727	SSF51261	Duplicated hybrid motif
Rfer_0728	SSF52374	Nucleotidylyl transferase
Rfer_0728	SSF55174	Alpha-L RNA-binding motif
Rfer_0729	SSF160240	Cation efflux protein cytoplasmic domain-like
Rfer_0729	SSF161111	Cation efflux protein transmembrane domain-like
Rfer_0730	SSF69500	DTD-like
Rfer_0731	SSF47240	Ferritin-like
Rfer_0732	SSF82784	OsmC-like
Rfer_0733	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_0733	SSF55021	ACT-like
Rfer_0735	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0735	SSF90123	ABC transporter transmembrane region
Rfer_0736	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0737	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_0738	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0739	SSF46929	DNA helicase RuvA subunit, C-terminal domain
Rfer_0739	SSF47781	RuvA domain 2-like
Rfer_0739	SSF50249	Nucleic acid-binding proteins
Rfer_0741	SSF54001	Cysteine proteinases
Rfer_0742	SSF140736	Rv1873-like
Rfer_0744	SSF81342	Transmembrane di-heme cytochromes
Rfer_0745	SSF48695	Multiheme cytochromes
Rfer_0746	SSF46626	Cytochrome c
Rfer_0747	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0748	SSF52833	Thioredoxin-like
Rfer_0749	SSF69786	YggU-like
Rfer_0750	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rfer_0751	SSF55804	Phoshotransferase/anion transport protein
Rfer_0752	SSF53795	PEP carboxykinase-like
Rfer_0752	SSF75138	HprK N-terminal domain-like
Rfer_0753	SSF46785	"Winged helix" DNA-binding domain
Rfer_0755	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0755	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_0758	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_0758	SSF50677	ValRS/IleRS/LeuRS editing domain
Rfer_0758	SSF52374	Nucleotidylyl transferase
Rfer_0760	SSF48019	post-AAA+ oligomerization domain-like
Rfer_0760	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0761	SSF53720	ALDH-like
Rfer_0762	SSF46626	Cytochrome c
Rfer_0765	SSF52440	PreATP-grasp domain
Rfer_0765	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_0766	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_0767	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_0768	SSF88713	Glycoside hydrolase/deacetylase
Rfer_0771	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0773	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_0773	SSF52374	Nucleotidylyl transferase
Rfer_0773	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Rfer_0774	SSF110997	Sporulation related repeat
Rfer_0775	SSF52833	Thioredoxin-like
Rfer_0777	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0779	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0780	SSF88723	PIN domain-like
Rfer_0781	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0782	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0782	SSF52172	CheY-like
Rfer_0783	SSF49373	Invasin/intimin cell-adhesion fragments
Rfer_0785	SSF103473	MFS general substrate transporter
Rfer_0785	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0787	SSF52172	CheY-like
Rfer_0791	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0798	SSF52172	CheY-like
Rfer_0798	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0799	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0802	SSF48452	TPR-like
Rfer_0803	SSF51395	FMN-linked oxidoreductases
Rfer_0804	SSF101327	YgfB-like
Rfer_0804	SSF103642	Sec-C motif
Rfer_0805	SSF51182	RmlC-like cupins
Rfer_0806	SSF46785	"Winged helix" DNA-binding domain
Rfer_0806	SSF53850	Periplasmic binding protein-like II
Rfer_0807	SSF46785	"Winged helix" DNA-binding domain
Rfer_0807	SSF53850	Periplasmic binding protein-like II
Rfer_0809	SSF52218	Flavoproteins
Rfer_0812	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0813	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0814	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rfer_0815	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0816	SSF53254	Phosphoglycerate mutase-like
Rfer_0818	SSF56784	HAD-like
Rfer_0820	SSF46785	"Winged helix" DNA-binding domain
Rfer_0820	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0821	SSF51726	UROD/MetE-like
Rfer_0822	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0824	SSF64182	DHH phosphoesterases
Rfer_0825	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_0825	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_0826	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0827	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rfer_0827	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rfer_0828	SSF52499	Isochorismatase-like hydrolases
Rfer_0829	SSF158702	Sec63 N-terminal domain-like
Rfer_0829	SSF47802	DNA polymerase beta, N-terminal domain-like
Rfer_0829	SSF81301	Nucleotidyltransferase
Rfer_0829	SSF89550	PHP domain-like
Rfer_0830	SSF46565	Chaperone J-domain
Rfer_0830	SSF49493	HSP40/DnaJ peptide-binding domain
Rfer_0830	SSF57938	DnaJ/Hsp40 cysteine-rich domain
Rfer_0831	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0831	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_0832	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Rfer_0832	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Rfer_0832	SSF53067	Actin-like ATPase domain
Rfer_0833	SSF49764	HSP20-like chaperones
Rfer_0836	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0836	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0837	SSF56112	Protein kinase-like (PK-like)
Rfer_0843	SSF51604	Enolase C-terminal domain-like
Rfer_0843	SSF54826	Enolase N-terminal domain-like
Rfer_0844	SSF46785	"Winged helix" DNA-binding domain
Rfer_0844	SSF53850	Periplasmic binding protein-like II
Rfer_0845	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_0846	SSF46785	"Winged helix" DNA-binding domain
Rfer_0846	SSF53850	Periplasmic binding protein-like II
Rfer_0847	SSF109854	DinB/YfiT-like putative metalloenzymes
Rfer_0849	SSF56317	Carbon-nitrogen hydrolase
Rfer_0850	SSF47090	PGBD-like
Rfer_0850	SSF53955	Lysozyme-like
Rfer_0852	SSF55920	Creatinase/aminopeptidase
Rfer_0853	SSF46955	Putative DNA-binding domain
Rfer_0854	SSF55008	HMA, heavy metal-associated domain
Rfer_0854	SSF56784	HAD-like
Rfer_0854	SSF81653	Calcium ATPase, transduction domain A
Rfer_0854	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_0856	SSF103473	MFS general substrate transporter
Rfer_0859	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0860	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0861	SSF111369	HlyD-like secretion proteins
Rfer_0862	SSF50475	FMN-binding split barrel
Rfer_0863	SSF56003	Molybdenum cofactor-binding domain
Rfer_0864	SSF47741	CO dehydrogenase ISP C-domain like
Rfer_0864	SSF54292	2Fe-2S ferredoxin-like
Rfer_0865	SSF55469	FMN-dependent nitroreductase-like
Rfer_0866	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0867	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_0868	SSF51230	Single hybrid motif
Rfer_0868	SSF51246	Rudiment single hybrid motif
Rfer_0868	SSF52440	PreATP-grasp domain
Rfer_0868	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_0869	SSF160467	PH0987 N-terminal domain-like
Rfer_0869	SSF50891	Cyclophilin-like
Rfer_0870	SSF88713	Glycoside hydrolase/deacetylase
Rfer_0871	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Rfer_0874	SSF46785	"Winged helix" DNA-binding domain
Rfer_0874	SSF48008	GntR ligand-binding domain-like
Rfer_0878	SSF103190	Sensory domain-like
Rfer_0878	SSF158472	HAMP domain-like
Rfer_0879	SSF46785	"Winged helix" DNA-binding domain
Rfer_0879	SSF53850	Periplasmic binding protein-like II
Rfer_0880	SSF53720	ALDH-like
Rfer_0881	SSF53383	PLP-dependent transferases
Rfer_0882	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_0882	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_0883	SSF53850	Periplasmic binding protein-like II
Rfer_0884	SSF51905	FAD/NAD(P)-binding domain
Rfer_0884	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_0885	SSF51905	FAD/NAD(P)-binding domain
Rfer_0886	SSF54292	2Fe-2S ferredoxin-like
Rfer_0887	SSF161098	MetI-like
Rfer_0888	SSF161098	MetI-like
Rfer_0889	SSF50331	MOP-like
Rfer_0889	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0890	SSF46785	"Winged helix" DNA-binding domain
Rfer_0890	SSF55781	GAF domain-like
Rfer_0891	SSF109604	HD-domain/PDEase-like
Rfer_0893	SSF52172	CheY-like
Rfer_0893	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0894	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0894	SSF52172	CheY-like
Rfer_0895	SSF141868	EAL domain-like
Rfer_0895	SSF52172	CheY-like
Rfer_0895	SSF55073	Nucleotide cyclase
Rfer_0895	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0896	SSF103190	Sensory domain-like
Rfer_0896	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0896	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0897	SSF52172	CheY-like
Rfer_0898	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_0899	SSF52172	CheY-like
Rfer_0900	SSF52091	SpoIIaa-like
Rfer_0901	SSF160246	EspE N-terminal domain-like
Rfer_0901	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rfer_0901	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0901	SSF50341	CheW-like
Rfer_0901	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0902	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_0903	SSF50341	CheW-like
Rfer_0904	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rfer_0904	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_0905	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rfer_0906	SSF52172	CheY-like
Rfer_0906	SSF52738	Methylesterase CheB, C-terminal domain
Rfer_0907	SSF103473	MFS general substrate transporter
Rfer_0908	SSF52151	FabD/lysophospholipase-like
Rfer_0909	SSF103647	TSP type-3 repeat
Rfer_0910	SSF46785	"Winged helix" DNA-binding domain
Rfer_0910	SSF53850	Periplasmic binding protein-like II
Rfer_0911	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0912	SSF101874	YceI-like
Rfer_0913	SSF46626	Cytochrome c
Rfer_0916	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_0917	SSF53955	Lysozyme-like
Rfer_0917	SSF56601	beta-lactamase/transpeptidase-like
Rfer_0919	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0919	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_0920	SSF56601	beta-lactamase/transpeptidase-like
Rfer_0920	SSF69189	Penicillin-binding protein associated domain
Rfer_0921	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0921	SSF52172	CheY-like
Rfer_0922	SSF103190	Sensory domain-like
Rfer_0922	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_0922	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_0922	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_0924	SSF50341	CheW-like
Rfer_0925	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_0927	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_0927	SSF51556	Metallo-dependent hydrolases
Rfer_0928	SSF46689	Homeodomain-like
Rfer_0928	SSF53697	SIS domain
Rfer_0929	SSF51419	PLP-binding barrel
Rfer_0930	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0931	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0932	SSF161098	MetI-like
Rfer_0933	SSF161098	MetI-like
Rfer_0934	SSF53850	Periplasmic binding protein-like II
Rfer_0935	SSF55298	YjgF-like
Rfer_0936	SSF53613	Ribokinase-like
Rfer_0938	SSF51569	Aldolase
Rfer_0940	SSF53383	PLP-dependent transferases
Rfer_0941	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_0943	SSF52833	Thioredoxin-like
Rfer_0945	SSF50475	FMN-binding split barrel
Rfer_0946	SSF82544	GckA/TtuD-like
Rfer_0947	SSF51658	Xylose isomerase-like
Rfer_0950	SSF51569	Aldolase
Rfer_0951	SSF51604	Enolase C-terminal domain-like
Rfer_0951	SSF54826	Enolase N-terminal domain-like
Rfer_0952	SSF161098	MetI-like
Rfer_0953	SSF160964	MalF N-terminal region-like
Rfer_0953	SSF161098	MetI-like
Rfer_0954	SSF53850	Periplasmic binding protein-like II
Rfer_0955	SSF50331	MOP-like
Rfer_0955	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0956	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0957	SSF47413	lambda repressor-like DNA-binding domains
Rfer_0957	SSF53822	Periplasmic binding protein-like I
Rfer_0959	SSF102114	Radical SAM enzymes
Rfer_0960	SSF103473	MFS general substrate transporter
Rfer_0961	SSF51569	Aldolase
Rfer_0963	SSF53613	Ribokinase-like
Rfer_0964	SSF51419	PLP-binding barrel
Rfer_0965	SSF53850	Periplasmic binding protein-like II
Rfer_0966	SSF161098	MetI-like
Rfer_0967	SSF161098	MetI-like
Rfer_0968	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0969	SSF55298	YjgF-like
Rfer_0970	SSF46785	"Winged helix" DNA-binding domain
Rfer_0970	SSF55781	GAF domain-like
Rfer_0972	SSF103473	MFS general substrate transporter
Rfer_0974	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0976	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0977	SSF51419	PLP-binding barrel
Rfer_0978	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_0978	SSF51556	Metallo-dependent hydrolases
Rfer_0979	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_0979	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_0980	SSF53639	AraD/HMP-PK domain-like
Rfer_0981	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0982	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0983	SSF161098	MetI-like
Rfer_0984	SSF161098	MetI-like
Rfer_0985	SSF53850	Periplasmic binding protein-like II
Rfer_0986	SSF53720	ALDH-like
Rfer_0987	SSF46785	"Winged helix" DNA-binding domain
Rfer_0987	SSF53850	Periplasmic binding protein-like II
Rfer_0989	SSF75304	Amidase signature (AS) enzymes
Rfer_0990	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_0991	SSF50341	CheW-like
Rfer_0993	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_0994	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_0994	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_0995	SSF52096	ClpP/crotonase
Rfer_0996	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_0996	SSF48452	TPR-like
Rfer_0996	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_0997	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_0998	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1000	SSF53901	Thiolase-like
Rfer_1001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1005	SSF53822	Periplasmic binding protein-like I
Rfer_1006	SSF56801	Acetyl-CoA synthetase-like
Rfer_1007	SSF52096	ClpP/crotonase
Rfer_1008	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rfer_1009	SSF52096	ClpP/crotonase
Rfer_1010	SSF52096	ClpP/crotonase
Rfer_1011	SSF46689	Homeodomain-like
Rfer_1011	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_1011	SSF56801	Acetyl-CoA synthetase-like
Rfer_1012	SSF53822	Periplasmic binding protein-like I
Rfer_1015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1016	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1017	SSF56801	Acetyl-CoA synthetase-like
Rfer_1018	SSF56112	Protein kinase-like (PK-like)
Rfer_1019	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_1019	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_1020	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1021	SSF141868	EAL domain-like
Rfer_1021	SSF55073	Nucleotide cyclase
Rfer_1021	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1023	SSF103473	MFS general substrate transporter
Rfer_1025	SSF53720	ALDH-like
Rfer_1026	SSF51569	Aldolase
Rfer_1028	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_1028	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1029	SSF53850	Periplasmic binding protein-like II
Rfer_1030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1031	SSF161098	MetI-like
Rfer_1032	SSF161098	MetI-like
Rfer_1033	SSF46785	"Winged helix" DNA-binding domain
Rfer_1033	SSF48008	GntR ligand-binding domain-like
Rfer_1034	SSF53901	Thiolase-like
Rfer_1035	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_1036	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_1037	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rfer_1038	SSF53681	Aspartate/glutamate racemase
Rfer_1040	SSF53850	Periplasmic binding protein-like II
Rfer_1041	SSF53383	PLP-dependent transferases
Rfer_1042	SSF46689	Homeodomain-like
Rfer_1042	SSF53697	SIS domain
Rfer_1043	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1046	SSF47413	lambda repressor-like DNA-binding domains
Rfer_1048	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_1050	SSF49785	Galactose-binding domain-like
Rfer_1051	SSF50475	FMN-binding split barrel
Rfer_1053	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1055	SSF52980	Restriction endonuclease-like
Rfer_1059	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1060	SSF116734	DNA methylase specificity domain
Rfer_1062	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1063	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
Rfer_1065	SSF52206	Hypothetical protein MTH538
Rfer_1066	SSF52141	Uracil-DNA glycosylase-like
Rfer_1067	SSF52200	Toll/Interleukin receptor TIR domain
Rfer_1069	SSF53271	PRTase-like
Rfer_1074	SSF53697	SIS domain
Rfer_1074	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_1075	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1076	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1077	SSF53822	Periplasmic binding protein-like I
Rfer_1080	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_1081	SSF46785	"Winged helix" DNA-binding domain
Rfer_1081	SSF54909	Dimeric alpha+beta barrel
Rfer_1082	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1082	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1083	SSF51161	Trimeric LpxA-like enzymes
Rfer_1083	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1084	SSF143548	Serine metabolism enzymes domain
Rfer_1086	SSF46785	"Winged helix" DNA-binding domain
Rfer_1086	SSF53850	Periplasmic binding protein-like II
Rfer_1087	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_1088	SSF48435	Bacterial muramidases
Rfer_1088	SSF53955	Lysozyme-like
Rfer_1089	SSF47616	GST C-terminal domain-like
Rfer_1089	SSF52833	Thioredoxin-like
Rfer_1090	SSF81301	Nucleotidyltransferase
Rfer_1090	SSF81891	Poly A polymerase C-terminal region-like
Rfer_1091	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1091	SSF52172	CheY-like
Rfer_1092	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1092	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1093	SSF141868	EAL domain-like
Rfer_1093	SSF55073	Nucleotide cyclase
Rfer_1093	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1094	SSF50331	MOP-like
Rfer_1094	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1095	SSF161098	MetI-like
Rfer_1096	SSF161098	MetI-like
Rfer_1097	SSF53850	Periplasmic binding protein-like II
Rfer_1099	SSF53850	Periplasmic binding protein-like II
Rfer_1100	SSF161098	MetI-like
Rfer_1101	SSF161098	MetI-like
Rfer_1102	SSF51445	(Trans)glycosidases
Rfer_1103	SSF50331	MOP-like
Rfer_1103	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1104	SSF51445	(Trans)glycosidases
Rfer_1105	SSF53474	alpha/beta-Hydrolases
Rfer_1106	SSF51445	(Trans)glycosidases
Rfer_1107	SSF50331	MOP-like
Rfer_1107	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1108	SSF161098	MetI-like
Rfer_1109	SSF161098	MetI-like
Rfer_1110	SSF53850	Periplasmic binding protein-like II
Rfer_1111	SSF51445	(Trans)glycosidases
Rfer_1112	SSF47413	lambda repressor-like DNA-binding domains
Rfer_1112	SSF53822	Periplasmic binding protein-like I
Rfer_1113	SSF51445	(Trans)glycosidases
Rfer_1113	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
Rfer_1114	SSF51905	FAD/NAD(P)-binding domain
Rfer_1115	SSF56935	Porins
Rfer_1116	SSF51695	PLC-like phosphodiesterases
Rfer_1117	SSF74653	TolA/TonB C-terminal domain
Rfer_1121	SSF53067	Actin-like ATPase domain
Rfer_1122	SSF51182	RmlC-like cupins
Rfer_1123	SSF52833	Thioredoxin-like
Rfer_1124	SSF46689	Homeodomain-like
Rfer_1124	SSF53697	SIS domain
Rfer_1125	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1125	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1126	SSF51569	Aldolase
Rfer_1127	SSF53697	SIS domain
Rfer_1128	SSF56784	HAD-like
Rfer_1129	SSF53474	alpha/beta-Hydrolases
Rfer_1131	SSF48592	GroEL equatorial domain-like
Rfer_1131	SSF52029	GroEL apical domain-like
Rfer_1131	SSF54849	GroEL-intermediate domain like
Rfer_1132	SSF50129	GroES-like
Rfer_1135	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1135	SSF52172	CheY-like
Rfer_1136	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1136	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1138	SSF53098	Ribonuclease H-like
Rfer_1143	SSF55008	HMA, heavy metal-associated domain
Rfer_1144	SSF55008	HMA, heavy metal-associated domain
Rfer_1144	SSF56784	HAD-like
Rfer_1144	SSF81653	Calcium ATPase, transduction domain A
Rfer_1144	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_1145	SSF53738	Phosphoglucomutase, first 3 domains
Rfer_1145	SSF55957	Phosphoglucomutase, C-terminal domain
Rfer_1153	SSF103088	OmpA-like
Rfer_1154	SSF46785	"Winged helix" DNA-binding domain
Rfer_1155	SSF81340	Clc chloride channel
Rfer_1156	SSF56601	beta-lactamase/transpeptidase-like
Rfer_1159	SSF74653	TolA/TonB C-terminal domain
Rfer_1160	SSF52833	Thioredoxin-like
Rfer_1161	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_1161	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_1161	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1162	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Rfer_1165	SSF81336	F1F0 ATP synthase subunit A
Rfer_1166	SSF81333	F1F0 ATP synthase subunit C
Rfer_1168	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_1168	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rfer_1168	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1169	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Rfer_1173	SSF46689	Homeodomain-like
Rfer_1174	SSF52980	Restriction endonuclease-like
Rfer_1176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1178	SSF56784	HAD-like
Rfer_1184	SSF143081	BB1717-like
Rfer_1190	SSF53098	Ribonuclease H-like
Rfer_1193	SSF52833	Thioredoxin-like
Rfer_1196	SSF56349	DNA breaking-rejoining enzymes
Rfer_1199	SSF102712	JAB1/MPN domain
Rfer_1202	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1204	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_1206	SSF103473	MFS general substrate transporter
Rfer_1207	SSF50630	Acid proteases
Rfer_1209	SSF54197	HIT-like
Rfer_1211	SSF52833	Thioredoxin-like
Rfer_1212	SSF54060	His-Me finger endonucleases
Rfer_1215	SSF46785	"Winged helix" DNA-binding domain
Rfer_1216	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_1220	SSF103473	MFS general substrate transporter
Rfer_1221	SSF46785	"Winged helix" DNA-binding domain
Rfer_1221	SSF53850	Periplasmic binding protein-like II
Rfer_1225	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1226	SSF56672	DNA/RNA polymerases
Rfer_1227	SSF89550	PHP domain-like
Rfer_1230	SSF53474	alpha/beta-Hydrolases
Rfer_1231	SSF48452	TPR-like
Rfer_1231	SSF52200	Toll/Interleukin receptor TIR domain
Rfer_1232	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_1235	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1236	SSF46785	"Winged helix" DNA-binding domain
Rfer_1237	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1238	SSF51161	Trimeric LpxA-like enzymes
Rfer_1238	SSF51182	RmlC-like cupins
Rfer_1239	SSF53383	PLP-dependent transferases
Rfer_1241	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_1242	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1243	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1244	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1244	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1245	SSF53697	SIS domain
Rfer_1246	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1247	SSF56796	Dehydroquinate synthase-like
Rfer_1248	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1248	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_1249	SSF51161	Trimeric LpxA-like enzymes
Rfer_1250	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1251	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1252	SSF51182	RmlC-like cupins
Rfer_1253	SSF53383	PLP-dependent transferases
Rfer_1254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1255	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_1256	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1258	SSF51161	Trimeric LpxA-like enzymes
Rfer_1259	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_1260	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1261	SSF51161	Trimeric LpxA-like enzymes
Rfer_1265	SSF54523	Pili subunits
Rfer_1266	SSF81901	HCP-like
Rfer_1267	SSF48576	Terpenoid synthases
Rfer_1268	SSF141091	L21p-like
Rfer_1269	SSF110324	Ribosomal L27 protein-like
Rfer_1270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1270	SSF82051	Obg GTP-binding protein N-terminal domain
Rfer_1271	SSF53633	Carbamate kinase-like
Rfer_1271	SSF88697	PUA domain-like
Rfer_1273	SSF55811	Nudix
Rfer_1274	SSF52954	Class II aaRS ABD-related
Rfer_1274	SSF55681	Class II aaRS and biotin synthetases
Rfer_1274	SSF55826	YbaK/ProRS associated domain
Rfer_1275	SSF53955	Lysozyme-like
Rfer_1276	SSF52833	Thioredoxin-like
Rfer_1277	SSF54534	FKBP-like
Rfer_1278	SSF56349	DNA breaking-rejoining enzymes
Rfer_1279	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1280	SSF75620	Release factor
Rfer_1281	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1281	SSF69075	Glutamyl tRNA-reductase dimerization domain
Rfer_1281	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
Rfer_1283	SSF51695	PLC-like phosphodiesterases
Rfer_1284	SSF50331	MOP-like
Rfer_1284	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1285	SSF161098	MetI-like
Rfer_1286	SSF161098	MetI-like
Rfer_1287	SSF53850	Periplasmic binding protein-like II
Rfer_1288	SSF46548	alpha-helical ferredoxin
Rfer_1288	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_1288	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_1289	SSF54197	HIT-like
Rfer_1291	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1292	SSF54427	NTF2-like
Rfer_1294	SSF56112	Protein kinase-like (PK-like)
Rfer_1297	SSF50249	Nucleic acid-binding proteins
Rfer_1297	SSF55261	GAD domain-like
Rfer_1297	SSF55681	Class II aaRS and biotin synthetases
Rfer_1298	SSF55811	Nudix
Rfer_1299	SSF56219	DNase I-like
Rfer_1300	SSF56024	Phospholipase D/nuclease
Rfer_1301	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rfer_1302	SSF54975	Acylphosphatase/BLUF domain-like
Rfer_1304	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1305	SSF55073	Nucleotide cyclase
Rfer_1306	SSF50199	Staphylococcal nuclease
Rfer_1307	SSF69572	Activating enzymes of the ubiquitin-like proteins
Rfer_1308	SSF50156	PDZ domain-like
Rfer_1308	SSF52096	ClpP/crotonase
Rfer_1309	SSF53254	Phosphoglycerate mutase-like
Rfer_1310	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_1311	SSF52833	Thioredoxin-like
Rfer_1312	SSF54611	SecB-like
Rfer_1313	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_1313	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1314	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_1314	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_1314	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_1315	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_1315	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_1316	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1316	SSF90123	ABC transporter transmembrane region
Rfer_1318	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rfer_1318	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rfer_1319	SSF142754	NadA-like
Rfer_1323	SSF56112	Protein kinase-like (PK-like)
Rfer_1325	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Rfer_1325	SSF53098	Ribonuclease H-like
Rfer_1325	SSF56672	DNA/RNA polymerases
Rfer_1325	SSF88723	PIN domain-like
Rfer_1326	SSF56300	Metallo-dependent phosphatases
Rfer_1327	SSF53383	PLP-dependent transferases
Rfer_1328	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_1329	SSF56784	HAD-like
Rfer_1331	SSF141259	CarD-like
Rfer_1331	SSF143517	TRCF domain-like
Rfer_1331	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1332	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1332	SSF69765	IpsF-like
Rfer_1333	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_1334	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rfer_1335	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_1336	SSF52954	Class II aaRS ABD-related
Rfer_1336	SSF55186	ThrRS/AlaRS common domain
Rfer_1336	SSF55681	Class II aaRS and biotin synthetases
Rfer_1336	SSF81271	TGS-like
Rfer_1337	SSF54364	Translation initiation factor IF3, N-terminal domain
Rfer_1337	SSF55200	Translation initiation factor IF3, C-terminal domain
Rfer_1338	SSF143034	L35p-like
Rfer_1339	SSF74731	Ribosomal protein L20
Rfer_1340	SSF46589	tRNA-binding arm
Rfer_1340	SSF55681	Class II aaRS and biotin synthetases
Rfer_1341	SSF46955	Putative DNA-binding domain
Rfer_1341	SSF50249	Nucleic acid-binding proteins
Rfer_1341	SSF54991	Anticodon-binding domain of PheRS
Rfer_1341	SSF55681	Class II aaRS and biotin synthetases
Rfer_1341	SSF56037	PheT/TilS domain
Rfer_1342	SSF47729	IHF-like DNA-binding proteins
Rfer_1343	SSF46955	Putative DNA-binding domain
Rfer_1344	SSF56300	Metallo-dependent phosphatases
Rfer_1345	SSF50891	Cyclophilin-like
Rfer_1346	SSF50891	Cyclophilin-like
Rfer_1347	SSF141523	L,D-transpeptidase catalytic domain-like
Rfer_1348	SSF48452	TPR-like
Rfer_1348	SSF54427	NTF2-like
Rfer_1349	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_1349	SSF52374	Nucleotidylyl transferase
Rfer_1350	SSF48150	DNA-glycosylase
Rfer_1351	SSF52096	ClpP/crotonase
Rfer_1352	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1352	SSF82829	MesJ substrate recognition domain-like
Rfer_1353	SSF53633	Carbamate kinase-like
Rfer_1353	SSF55021	ACT-like
Rfer_1354	SSF56349	DNA breaking-rejoining enzymes
Rfer_1355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1364	SSF47598	Ribbon-helix-helix
Rfer_1365	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1366	SSF116734	DNA methylase specificity domain
Rfer_1367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1369	SSF53383	PLP-dependent transferases
Rfer_1370	SSF57802	Rubredoxin-like
Rfer_1371	SSF52172	CheY-like
Rfer_1372	SSF52172	CheY-like
Rfer_1373	SSF50341	CheW-like
Rfer_1374	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_1375	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rfer_1375	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1375	SSF50341	CheW-like
Rfer_1375	SSF52172	CheY-like
Rfer_1375	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1376	SSF48173	Cryptochrome/photolyase FAD-binding domain
Rfer_1376	SSF52425	Cryptochrome/photolyase, N-terminal domain
Rfer_1377	SSF143456	VC0467-like
Rfer_1378	SSF53098	Ribonuclease H-like
Rfer_1379	SSF53271	PRTase-like
Rfer_1380	SSF53671	Aspartate/ornithine carbamoyltransferase
Rfer_1381	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_1381	SSF51556	Metallo-dependent hydrolases
Rfer_1382	SSF50447	Translation proteins
Rfer_1382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1382	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_1382	SSF54980	EF-G C-terminal domain-like
Rfer_1384	SSF49695	gamma-Crystallin-like
Rfer_1386	SSF75620	Release factor
Rfer_1387	SSF52218	Flavoproteins
Rfer_1388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1389	SSF54292	2Fe-2S ferredoxin-like
Rfer_1390	SSF64182	DHH phosphoesterases
Rfer_1391	SSF51649	RuBisCo, C-terminal domain
Rfer_1391	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rfer_1392	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1393	SSF56655	Carbohydrate phosphatase
Rfer_1394	SSF46785	"Winged helix" DNA-binding domain
Rfer_1394	SSF53850	Periplasmic binding protein-like II
Rfer_1396	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rfer_1398	SSF109755	PhoU-like
Rfer_1401	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_1402	SSF54565	Ribosomal protein S16
Rfer_1403	SSF50346	PRC-barrel domain
Rfer_1403	SSF50447	Translation proteins
Rfer_1404	SSF75217	alpha/beta knot
Rfer_1405	SSF50104	Translation proteins SH3-like domain
Rfer_1406	SSF55811	Nudix
Rfer_1408	SSF53383	PLP-dependent transferases
Rfer_1409	SSF50249	Nucleic acid-binding proteins
Rfer_1409	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1410	SSF55248	PCD-like
Rfer_1412	SSF53098	Ribonuclease H-like
Rfer_1413	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1417	SSF141371	PilZ domain-like
Rfer_1420	SSF48452	TPR-like
Rfer_1420	SSF52172	CheY-like
Rfer_1421	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1422	SSF50249	Nucleic acid-binding proteins
Rfer_1424	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1424	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rfer_1424	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_1426	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_1427	SSF141868	EAL domain-like
Rfer_1427	SSF55073	Nucleotide cyclase
Rfer_1429	SSF50129	GroES-like
Rfer_1429	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1430	SSF109755	PhoU-like
Rfer_1432	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_1432	SSF50677	ValRS/IleRS/LeuRS editing domain
Rfer_1432	SSF52374	Nucleotidylyl transferase
Rfer_1433	SSF52374	Nucleotidylyl transferase
Rfer_1433	SSF82114	Riboflavin kinase-like
Rfer_1436	SSF50249	Nucleic acid-binding proteins
Rfer_1436	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rfer_1437	SSF89807	Dodecin-like
Rfer_1438	SSF46626	Cytochrome c
Rfer_1440	SSF118215	Proton glutamate symport protein
Rfer_1441	SSF50475	FMN-binding split barrel
Rfer_1443	SSF47240	Ferritin-like
Rfer_1444	SSF53474	alpha/beta-Hydrolases
Rfer_1448	SSF54427	NTF2-like
Rfer_1451	SSF47188	Hemerythrin-like
Rfer_1453	SSF54975	Acylphosphatase/BLUF domain-like
Rfer_1455	SSF47175	Cytochromes
Rfer_1456	SSF55073	Nucleotide cyclase
Rfer_1457	SSF48019	post-AAA+ oligomerization domain-like
Rfer_1457	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1458	SSF82607	YbaB-like
Rfer_1459	SSF111304	Recombination protein RecR
Rfer_1460	SSF53850	Periplasmic binding protein-like II
Rfer_1461	SSF53955	Lysozyme-like
Rfer_1462	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_1463	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1464	SSF53098	Ribonuclease H-like
Rfer_1466	SSF53218	Molybdenum cofactor biosynthesis proteins
Rfer_1466	SSF63867	MoeA C-terminal domain-like
Rfer_1466	SSF63882	MoeA N-terminal region -like
Rfer_1467	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1468	SSF102114	Radical SAM enzymes
Rfer_1469	SSF109604	HD-domain/PDEase-like
Rfer_1473	SSF50324	Inorganic pyrophosphatase
Rfer_1474	SSF53474	alpha/beta-Hydrolases
Rfer_1475	SSF52777	CoA-dependent acyltransferases
Rfer_1476	SSF50341	CheW-like
Rfer_1477	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_1477	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_1478	SSF89028	Cobalamin adenosyltransferase-like
Rfer_1479	SSF53784	Phosphofructokinase
Rfer_1480	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_1485	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1485	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1485	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1486	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1486	SSF52172	CheY-like
Rfer_1487	SSF53822	Periplasmic binding protein-like I
Rfer_1488	SSF47060	S15/NS1 RNA-binding domain
Rfer_1489	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Rfer_1489	SSF50249	Nucleic acid-binding proteins
Rfer_1489	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_1489	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Rfer_1489	SSF55666	Ribonuclease PH domain 2-like
Rfer_1490	SSF50129	GroES-like
Rfer_1490	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1491	SSF51351	Triosephosphate isomerase (TIM)
Rfer_1494	SSF56770	HydA/Nqo6-like
Rfer_1495	SSF143243	Nqo5-like
Rfer_1496	SSF56762	HydB/Nqo4-like
Rfer_1497	SSF52833	Thioredoxin-like
Rfer_1498	SSF140490	Nqo1C-terminal domain-like
Rfer_1498	SSF142019	Nqo1 FMN-binding domain-like
Rfer_1498	SSF142984	Nqo1 middle domain-like
Rfer_1499	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_1499	SSF54292	2Fe-2S ferredoxin-like
Rfer_1499	SSF54862	4Fe-4S ferredoxins
Rfer_1501	SSF54862	4Fe-4S ferredoxins
Rfer_1507	SSF55811	Nudix
Rfer_1509	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1509	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rfer_1512	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1512	SSF90123	ABC transporter transmembrane region
Rfer_1513	SSF46785	"Winged helix" DNA-binding domain
Rfer_1514	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_1515	SSF111369	HlyD-like secretion proteins
Rfer_1515	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_1516	SSF103473	MFS general substrate transporter
Rfer_1518	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1518	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1519	SSF159245	AttH-like
Rfer_1520	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_1521	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1522	SSF53187	Zn-dependent exopeptidases
Rfer_1523	SSF161098	MetI-like
Rfer_1524	SSF161098	MetI-like
Rfer_1525	SSF53850	Periplasmic binding protein-like II
Rfer_1526	SSF55073	Nucleotide cyclase
Rfer_1526	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1528	SSF54631	CBS-domain pair
Rfer_1529	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_1534	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1536	SSF103473	MFS general substrate transporter
Rfer_1537	SSF49764	HSP20-like chaperones
Rfer_1538	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1538	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1539	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1539	SSF52172	CheY-like
Rfer_1540	SSF46785	"Winged helix" DNA-binding domain
Rfer_1540	SSF51206	cAMP-binding domain-like
Rfer_1541	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1543	SSF52980	Restriction endonuclease-like
Rfer_1544	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1545	SSF53800	Chelatase
Rfer_1546	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rfer_1547	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_1548	SSF51905	FAD/NAD(P)-binding domain
Rfer_1549	SSF48576	Terpenoid synthases
Rfer_1550	SSF48576	Terpenoid synthases
Rfer_1551	SSF111369	HlyD-like secretion proteins
Rfer_1552	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_1552	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_1552	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_1553	SSF102735	Trigger factor ribosome-binding domain
Rfer_1553	SSF109998	Triger factor/SurA peptide-binding domain-like
Rfer_1553	SSF54534	FKBP-like
Rfer_1554	SSF52096	ClpP/crotonase
Rfer_1555	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1555	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_1556	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1556	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_1556	SSF88697	PUA domain-like
Rfer_1558	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_1558	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_1560	SSF55073	Nucleotide cyclase
Rfer_1561	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1562	SSF53613	Ribokinase-like
Rfer_1563	SSF48452	TPR-like
Rfer_1565	SSF47729	IHF-like DNA-binding proteins
Rfer_1566	SSF50249	Nucleic acid-binding proteins
Rfer_1567	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1567	SSF55205	EPT/RTPC-like
Rfer_1568	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_1568	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1569	SSF48600	Chorismate mutase II
Rfer_1569	SSF53850	Periplasmic binding protein-like II
Rfer_1569	SSF55021	ACT-like
Rfer_1570	SSF53383	PLP-dependent transferases
Rfer_1571	SSF101904	GyrA/ParC C-terminal domain-like
Rfer_1571	SSF56719	Type II DNA topoisomerase
Rfer_1572	SSF103088	OmpA-like
Rfer_1573	SSF52096	ClpP/crotonase
Rfer_1574	SSF50156	PDZ domain-like
Rfer_1574	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_1575	SSF52833	Thioredoxin-like
Rfer_1575	SSF54423	DsbC/DsbG N-terminal domain-like
Rfer_1576	SSF51905	FAD/NAD(P)-binding domain
Rfer_1577	SSF52743	Subtilisin-like
Rfer_1578	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1578	SSF81271	TGS-like
Rfer_1580	SSF51395	FMN-linked oxidoreductases
Rfer_1581	SSF46689	Homeodomain-like
Rfer_1582	SSF52335	Methylglyoxal synthase-like
Rfer_1582	SSF53927	Cytidine deaminase-like
Rfer_1583	SSF46626	Cytochrome c
Rfer_1588	SSF46626	Cytochrome c
Rfer_1589	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1590	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_1594	SSF161098	MetI-like
Rfer_1595	SSF50331	MOP-like
Rfer_1595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1598	SSF52833	Thioredoxin-like
Rfer_1601	SSF51905	FAD/NAD(P)-binding domain
Rfer_1603	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_1603	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_1607	SSF51658	Xylose isomerase-like
Rfer_1610	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1611	SSF102114	Radical SAM enzymes
Rfer_1612	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1613	SSF51905	FAD/NAD(P)-binding domain
Rfer_1613	SSF55326	PurM N-terminal domain-like
Rfer_1613	SSF56042	PurM C-terminal domain-like
Rfer_1614	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_1615	SSF53850	Periplasmic binding protein-like II
Rfer_1616	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1617	SSF161098	MetI-like
Rfer_1618	SSF161098	MetI-like
Rfer_1619	SSF109854	DinB/YfiT-like putative metalloenzymes
Rfer_1619	SSF56436	C-type lectin-like
Rfer_1620	SSF46955	Putative DNA-binding domain
Rfer_1621	SSF51905	FAD/NAD(P)-binding domain
Rfer_1621	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rfer_1623	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1624	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_1627	SSF56112	Protein kinase-like (PK-like)
Rfer_1628	SSF81606	PP2C-like
Rfer_1629	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_1629	SSF55666	Ribonuclease PH domain 2-like
Rfer_1630	SSF52972	ITPase-like
Rfer_1631	SSF102114	Radical SAM enzymes
Rfer_1632	SSF54631	CBS-domain pair
Rfer_1635	SSF53850	Periplasmic binding protein-like II
Rfer_1636	SSF51569	Aldolase
Rfer_1637	SSF89562	RraA-like
Rfer_1638	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1639	SSF46785	"Winged helix" DNA-binding domain
Rfer_1639	SSF53850	Periplasmic binding protein-like II
Rfer_1640	SSF51905	FAD/NAD(P)-binding domain
Rfer_1641	SSF46785	"Winged helix" DNA-binding domain
Rfer_1641	SSF48008	GntR ligand-binding domain-like
Rfer_1643	SSF50129	GroES-like
Rfer_1643	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1645	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_1645	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_1646	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_1646	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_1647	SSF46785	"Winged helix" DNA-binding domain
Rfer_1647	SSF51206	cAMP-binding domain-like
Rfer_1648	SSF46785	"Winged helix" DNA-binding domain
Rfer_1649	SSF53328	Formyltransferase
Rfer_1650	SSF46785	"Winged helix" DNA-binding domain
Rfer_1650	SSF55781	GAF domain-like
Rfer_1651	SSF111331	NAD kinase/diacylglycerol kinase-like
Rfer_1652	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1653	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1654	SSF48150	DNA-glycosylase
Rfer_1654	SSF55811	Nudix
Rfer_1655	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1656	SSF46946	S13-like H2TH domain
Rfer_1656	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_1656	SSF81624	N-terminal domain of MutM-like DNA repair proteins
Rfer_1657	SSF48452	TPR-like
Rfer_1658	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Rfer_1659	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_1659	SSF55060	GHMP Kinase, C-terminal domain
Rfer_1660	SSF53271	PRTase-like
Rfer_1661	SSF50715	Ribosomal protein L25-like
Rfer_1662	SSF53178	Peptidyl-tRNA hydrolase-like
Rfer_1664	SSF54862	4Fe-4S ferredoxins
Rfer_1665	SSF56784	HAD-like
Rfer_1665	SSF81653	Calcium ATPase, transduction domain A
Rfer_1665	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rfer_1665	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_1666	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1667	SSF52374	Nucleotidylyl transferase
Rfer_1668	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1670	SSF63411	LuxS/MPP-like metallohydrolase
Rfer_1671	SSF63411	LuxS/MPP-like metallohydrolase
Rfer_1672	SSF47364	Domain of the SRP/SRP receptor G-proteins
Rfer_1672	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1673	SSF55073	Nucleotide cyclase
Rfer_1674	SSF53474	alpha/beta-Hydrolases
Rfer_1675	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1676	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_1677	SSF75217	alpha/beta knot
Rfer_1678	SSF53271	PRTase-like
Rfer_1679	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1680	SSF46626	Cytochrome c
Rfer_1680	SSF49503	Cupredoxins
Rfer_1680	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
Rfer_1681	SSF81442	Cytochrome c oxidase subunit I-like
Rfer_1682	SSF110111	Ctag/Cox11
Rfer_1684	SSF81452	Cytochrome c oxidase subunit III-like
Rfer_1687	SSF52833	Thioredoxin-like
Rfer_1690	SSF52833	Thioredoxin-like
Rfer_1691	SSF53850	Periplasmic binding protein-like II
Rfer_1692	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_1692	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_1694	SSF103473	MFS general substrate transporter
Rfer_1694	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1695	SSF54862	4Fe-4S ferredoxins
Rfer_1696	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_1697	SSF46785	"Winged helix" DNA-binding domain
Rfer_1698	SSF103473	MFS general substrate transporter
Rfer_1699	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1699	SSF56317	Carbon-nitrogen hydrolase
Rfer_1700	SSF54913	GlnB-like
Rfer_1703	SSF46785	"Winged helix" DNA-binding domain
Rfer_1703	SSF51206	cAMP-binding domain-like
Rfer_1704	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rfer_1704	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rfer_1706	SSF51182	RmlC-like cupins
Rfer_1707	SSF51182	RmlC-like cupins
Rfer_1710	SSF48557	L-aspartase-like
Rfer_1711	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1712	SSF52172	CheY-like
Rfer_1713	SSF48695	Multiheme cytochromes
Rfer_1714	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_1715	SSF53850	Periplasmic binding protein-like II
Rfer_1715	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Rfer_1716	SSF69618	HemD-like
Rfer_1719	SSF55073	Nucleotide cyclase
Rfer_1720	SSF50249	Nucleic acid-binding proteins
Rfer_1721	SSF55120	Pseudouridine synthase
Rfer_1721	SSF55174	Alpha-L RNA-binding motif
Rfer_1722	SSF56784	HAD-like
Rfer_1723	SSF50022	ISP domain
Rfer_1724	SSF52096	ClpP/crotonase
Rfer_1725	SSF53790	Tetrapyrrole methylase
Rfer_1726	SSF52972	ITPase-like
Rfer_1728	SSF57829	Zn-binding ribosomal proteins
Rfer_1729	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_1730	SSF53901	Thiolase-like
Rfer_1731	SSF52151	FabD/lysophospholipase-like
Rfer_1731	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rfer_1732	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1733	SSF47336	ACP-like
Rfer_1734	SSF53901	Thiolase-like
Rfer_1736	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_1736	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_1737	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Rfer_1739	SSF50156	PDZ domain-like
Rfer_1739	SSF50494	Trypsin-like serine proteases
Rfer_1740	SSF50447	Translation proteins
Rfer_1740	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1740	SSF54980	EF-G C-terminal domain-like
Rfer_1741	SSF51306	LexA/Signal peptidase
Rfer_1743	SSF54768	dsRNA-binding domain-like
Rfer_1743	SSF69065	RNase III domain-like
Rfer_1744	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1744	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rfer_1745	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rfer_1750	SSF143011	RelE-like
Rfer_1751	SSF50249	Nucleic acid-binding proteins
Rfer_1751	SSF57863	ArfGap/RecO-like zinc finger
Rfer_1752	SSF63892	Pyridoxine 5'-phosphate synthase
Rfer_1753	SSF56214	4'-phosphopantetheinyl transferase
Rfer_1754	SSF51445	(Trans)glycosidases
Rfer_1756	SSF103473	MFS general substrate transporter
Rfer_1757	SSF55159	eIF1-like
Rfer_1759	SSF50331	MOP-like
Rfer_1759	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1760	SSF161098	MetI-like
Rfer_1761	SSF161098	MetI-like
Rfer_1762	SSF53850	Periplasmic binding protein-like II
Rfer_1763	SSF53474	alpha/beta-Hydrolases
Rfer_1765	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1766	SSF46689	Homeodomain-like
Rfer_1766	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_1767	SSF141868	EAL domain-like
Rfer_1767	SSF52172	CheY-like
Rfer_1767	SSF55073	Nucleotide cyclase
Rfer_1767	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1768	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rfer_1768	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1768	SSF52172	CheY-like
Rfer_1768	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1768	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1770	SSF53850	Periplasmic binding protein-like II
Rfer_1771	SSF161098	MetI-like
Rfer_1772	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1772	SSF55021	ACT-like
Rfer_1773	SSF51679	Bacterial luciferase-like
Rfer_1774	SSF50331	MOP-like
Rfer_1775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1776	SSF161098	MetI-like
Rfer_1777	SSF51679	Bacterial luciferase-like
Rfer_1778	SSF53850	Periplasmic binding protein-like II
Rfer_1779	SSF53850	Periplasmic binding protein-like II
Rfer_1780	SSF52218	Flavoproteins
Rfer_1781	SSF53850	Periplasmic binding protein-like II
Rfer_1782	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1782	SSF56112	Protein kinase-like (PK-like)
Rfer_1784	SSF50249	Nucleic acid-binding proteins
Rfer_1784	SSF55681	Class II aaRS and biotin synthetases
Rfer_1786	SSF52096	ClpP/crotonase
Rfer_1787	SSF51366	Ribulose-phoshate binding barrel
Rfer_1788	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_1789	SSF51366	Ribulose-phoshate binding barrel
Rfer_1790	SSF55120	Pseudouridine synthase
Rfer_1792	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1792	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1793	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_1794	SSF52016	LeuD/IlvD-like
Rfer_1795	SSF53732	Aconitase iron-sulfur domain
Rfer_1796	SSF48256	Citrate synthase
Rfer_1797	SSF109910	YgfY-like
Rfer_1798	SSF46548	alpha-helical ferredoxin
Rfer_1798	SSF54292	2Fe-2S ferredoxin-like
Rfer_1799	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rfer_1799	SSF51905	FAD/NAD(P)-binding domain
Rfer_1799	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rfer_1800	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rfer_1801	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rfer_1802	SSF46785	"Winged helix" DNA-binding domain
Rfer_1802	SSF64288	Chorismate lyase-like
Rfer_1803	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1803	SSF56327	LDH C-terminal domain-like
Rfer_1804	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_1806	SSF52016	LeuD/IlvD-like
Rfer_1806	SSF53732	Aconitase iron-sulfur domain
Rfer_1806	SSF74778	Aconitase B, N-terminal domain
Rfer_1809	SSF55331	Tautomerase/MIF
Rfer_1812	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1813	SSF51395	FMN-linked oxidoreductases
Rfer_1818	SSF158682	TerB-like
Rfer_1819	SSF52980	Restriction endonuclease-like
Rfer_1821	SSF47413	lambda repressor-like DNA-binding domains
Rfer_1822	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1823	SSF50715	Ribosomal protein L25-like
Rfer_1823	SSF52374	Nucleotidylyl transferase
Rfer_1825	SSF141868	EAL domain-like
Rfer_1825	SSF52172	CheY-like
Rfer_1825	SSF55073	Nucleotide cyclase
Rfer_1825	SSF55781	GAF domain-like
Rfer_1825	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1826	SSF52172	CheY-like
Rfer_1827	SSF158472	HAMP domain-like
Rfer_1827	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1827	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1828	SSF88697	PUA domain-like
Rfer_1830	SSF53474	alpha/beta-Hydrolases
Rfer_1831	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_1832	SSF48334	DNA repair protein MutS, domain III
Rfer_1832	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1832	SSF53150	DNA repair protein MutS, domain II
Rfer_1832	SSF55271	DNA repair protein MutS, domain I
Rfer_1835	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1836	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1838	SSF53822	Periplasmic binding protein-like I
Rfer_1839	SSF46785	"Winged helix" DNA-binding domain
Rfer_1839	SSF48008	GntR ligand-binding domain-like
Rfer_1843	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_1845	SSF52096	ClpP/crotonase
Rfer_1846	SSF52096	ClpP/crotonase
Rfer_1849	SSF52151	FabD/lysophospholipase-like
Rfer_1849	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rfer_1851	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_1852	SSF52151	FabD/lysophospholipase-like
Rfer_1853	SSF51445	(Trans)glycosidases
Rfer_1854	SSF53850	Periplasmic binding protein-like II
Rfer_1855	SSF161098	MetI-like
Rfer_1856	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1856	SSF54631	CBS-domain pair
Rfer_1857	SSF161098	MetI-like
Rfer_1859	SSF89360	HesB-like domain
Rfer_1860	SSF101960	Stabilizer of iron transporter SufD
Rfer_1861	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1862	SSF101960	Stabilizer of iron transporter SufD
Rfer_1863	SSF53383	PLP-dependent transferases
Rfer_1864	SSF82649	SufE/NifU
Rfer_1865	SSF110836	Hypothetical protein SAV1430
Rfer_1865	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rfer_1866	SSF46785	"Winged helix" DNA-binding domain
Rfer_1867	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1867	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_1867	SSF55021	ACT-like
Rfer_1869	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1869	SSF52172	CheY-like
Rfer_1870	SSF158472	HAMP domain-like
Rfer_1870	SSF55781	GAF domain-like
Rfer_1870	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1871	SSF53901	Thiolase-like
Rfer_1872	SSF52172	CheY-like
Rfer_1873	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1873	SSF52172	CheY-like
Rfer_1874	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1881	SSF49373	Invasin/intimin cell-adhesion fragments
Rfer_1882	SSF103088	OmpA-like
Rfer_1882	SSF56925	OMPA-like
Rfer_1883	SSF46785	"Winged helix" DNA-binding domain
Rfer_1886	SSF81442	Cytochrome c oxidase subunit I-like
Rfer_1887	SSF55073	Nucleotide cyclase
Rfer_1887	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1888	SSF103039	CheC-like
Rfer_1889	SSF52172	CheY-like
Rfer_1890	SSF52096	ClpP/crotonase
Rfer_1891	SSF51395	FMN-linked oxidoreductases
Rfer_1891	SSF51905	FAD/NAD(P)-binding domain
Rfer_1891	SSF51971	Nucleotide-binding domain
Rfer_1891	SSF54427	NTF2-like
Rfer_1892	SSF46785	"Winged helix" DNA-binding domain
Rfer_1893	SSF54631	CBS-domain pair
Rfer_1894	SSF103473	MFS general substrate transporter
Rfer_1895	SSF55120	Pseudouridine synthase
Rfer_1896	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_1897	SSF141868	EAL domain-like
Rfer_1897	SSF55073	Nucleotide cyclase
Rfer_1899	SSF46785	"Winged helix" DNA-binding domain
Rfer_1899	SSF53067	Actin-like ATPase domain
Rfer_1900	SSF102546	RbsD-like
Rfer_1901	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1903	SSF53822	Periplasmic binding protein-like I
Rfer_1904	SSF53613	Ribokinase-like
Rfer_1905	SSF52374	Nucleotidylyl transferase
Rfer_1906	SSF51905	FAD/NAD(P)-binding domain
Rfer_1907	SSF46785	"Winged helix" DNA-binding domain
Rfer_1907	SSF53850	Periplasmic binding protein-like II
Rfer_1908	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1908	SSF88723	PIN domain-like
Rfer_1909	SSF52833	Thioredoxin-like
Rfer_1910	SSF64076	MTH938-like
Rfer_1911	SSF53383	PLP-dependent transferases
Rfer_1912	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1912	SSF55021	ACT-like
Rfer_1912	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1913	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_1914	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1915	SSF53218	Molybdenum cofactor biosynthesis proteins
Rfer_1915	SSF63867	MoeA C-terminal domain-like
Rfer_1915	SSF63882	MoeA N-terminal region -like
Rfer_1916	SSF54285	MoaD/ThiS
Rfer_1917	SSF54690	Molybdopterin synthase subunit MoaE
Rfer_1919	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1919	SSF81923	Double Clp-N motif
Rfer_1920	SSF160975	AF1531-like
Rfer_1921	SSF143975	IlvD/EDD N-terminal domain-like
Rfer_1921	SSF52016	LeuD/IlvD-like
Rfer_1922	SSF46785	"Winged helix" DNA-binding domain
Rfer_1922	SSF53850	Periplasmic binding protein-like II
Rfer_1924	SSF52096	ClpP/crotonase
Rfer_1925	SSF56801	Acetyl-CoA synthetase-like
Rfer_1926	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1927	SSF55008	HMA, heavy metal-associated domain
Rfer_1927	SSF56784	HAD-like
Rfer_1927	SSF81653	Calcium ATPase, transduction domain A
Rfer_1927	SSF81665	Calcium ATPase, transmembrane domain M
Rfer_1928	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_1928	SSF52172	CheY-like
Rfer_1928	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1930	SSF81442	Cytochrome c oxidase subunit I-like
Rfer_1931	SSF46626	Cytochrome c
Rfer_1933	SSF46626	Cytochrome c
Rfer_1934	SSF54862	4Fe-4S ferredoxins
Rfer_1937	SSF46785	"Winged helix" DNA-binding domain
Rfer_1937	SSF51206	cAMP-binding domain-like
Rfer_1938	SSF102114	Radical SAM enzymes
Rfer_1942	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1943	SSF51395	FMN-linked oxidoreductases
Rfer_1945	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_1946	SSF103473	MFS general substrate transporter
Rfer_1947	SSF54913	GlnB-like
Rfer_1948	SSF53067	Actin-like ATPase domain
Rfer_1949	SSF53850	Periplasmic binding protein-like II
Rfer_1950	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1951	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_1952	SSF161098	MetI-like
Rfer_1953	SSF161098	MetI-like
Rfer_1954	SSF47592	SWIB/MDM2 domain
Rfer_1955	SSF89562	RraA-like
Rfer_1956	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_1957	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1958	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_1958	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_1959	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_1959	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_1960	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rfer_1961	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_1962	SSF51316	Mss4-like
Rfer_1964	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1965	SSF56796	Dehydroquinate synthase-like
Rfer_1967	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_1968	SSF46565	Chaperone J-domain
Rfer_1968	SSF49493	HSP40/DnaJ peptide-binding domain
Rfer_1968	SSF57938	DnaJ/Hsp40 cysteine-rich domain
Rfer_1969	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Rfer_1969	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Rfer_1969	SSF53067	Actin-like ATPase domain
Rfer_1970	SSF51064	Head domain of nucleotide exchange factor GrpE
Rfer_1970	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
Rfer_1971	SSF54534	FKBP-like
Rfer_1972	SSF46785	"Winged helix" DNA-binding domain
Rfer_1975	SSF102114	Radical SAM enzymes
Rfer_1976	SSF50249	Nucleic acid-binding proteins
Rfer_1977	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1978	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_1978	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1978	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_1979	SSF109604	HD-domain/PDEase-like
Rfer_1980	SSF109604	HD-domain/PDEase-like
Rfer_1980	SSF52172	CheY-like
Rfer_1981	SSF109604	HD-domain/PDEase-like
Rfer_1982	SSF141868	EAL domain-like
Rfer_1982	SSF52172	CheY-like
Rfer_1982	SSF55073	Nucleotide cyclase
Rfer_1982	SSF55781	GAF domain-like
Rfer_1982	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1983	SSF141868	EAL domain-like
Rfer_1983	SSF55073	Nucleotide cyclase
Rfer_1983	SSF55781	GAF domain-like
Rfer_1983	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_1984	SSF53613	Ribokinase-like
Rfer_1984	SSF64153	YjeF N-terminal domain-like
Rfer_1985	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_1986	SSF109604	HD-domain/PDEase-like
Rfer_1987	SSF51905	FAD/NAD(P)-binding domain
Rfer_1987	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_1988	SSF75304	Amidase signature (AS) enzymes
Rfer_1989	SSF52313	Ribosomal protein S2
Rfer_1990	SSF46934	UBA-like
Rfer_1990	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
Rfer_1991	SSF53633	Carbamate kinase-like
Rfer_1992	SSF55194	Ribosome recycling factor, RRF
Rfer_1994	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_1994	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_1994	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Rfer_1995	SSF50156	PDZ domain-like
Rfer_1997	SSF111384	OmpH-like
Rfer_1998	SSF51161	Trimeric LpxA-like enzymes
Rfer_1999	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2000	SSF51161	Trimeric LpxA-like enzymes
Rfer_2001	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2002	SSF53098	Ribonuclease H-like
Rfer_2003	SSF55315	L30e-like
Rfer_2003	SSF75217	alpha/beta knot
Rfer_2004	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
Rfer_2004	SSF52317	Class I glutamine amidotransferase-like
Rfer_2006	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
Rfer_2006	SSF52335	Methylglyoxal synthase-like
Rfer_2006	SSF52440	PreATP-grasp domain
Rfer_2006	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2007	SSF46557	GreA transcript cleavage protein, N-terminal domain
Rfer_2007	SSF54534	FKBP-like
Rfer_2009	SSF75471	YhbY-like
Rfer_2010	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2011	SSF140990	FtsH protease domain-like
Rfer_2011	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2012	SSF51717	Dihydropteroate synthetase-like
Rfer_2013	SSF53738	Phosphoglucomutase, first 3 domains
Rfer_2013	SSF55957	Phosphoglucomutase, C-terminal domain
Rfer_2014	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2016	SSF141868	EAL domain-like
Rfer_2016	SSF55073	Nucleotide cyclase
Rfer_2016	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2017	SSF140356	PPK N-terminal domain-like
Rfer_2017	SSF143724	PHP14-like
Rfer_2017	SSF56024	Phospholipase D/nuclease
Rfer_2018	SSF53254	Phosphoglycerate mutase-like
Rfer_2021	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_2022	SSF46785	"Winged helix" DNA-binding domain
Rfer_2022	SSF54909	Dimeric alpha+beta barrel
Rfer_2023	SSF81342	Transmembrane di-heme cytochromes
Rfer_2024	SSF55154	CYTH-like phosphatases
Rfer_2025	SSF53187	Zn-dependent exopeptidases
Rfer_2026	SSF52151	FabD/lysophospholipase-like
Rfer_2028	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2029	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2030	SSF141868	EAL domain-like
Rfer_2030	SSF54631	CBS-domain pair
Rfer_2030	SSF55073	Nucleotide cyclase
Rfer_2031	SSF53822	Periplasmic binding protein-like I
Rfer_2032	SSF109604	HD-domain/PDEase-like
Rfer_2032	SSF53067	Actin-like ATPase domain
Rfer_2033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2036	SSF56935	Porins
Rfer_2038	SSF158472	HAMP domain-like
Rfer_2038	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2038	SSF52172	CheY-like
Rfer_2038	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2039	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2039	SSF52172	CheY-like
Rfer_2040	SSF89550	PHP domain-like
Rfer_2041	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2042	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2043	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2044	SSF53187	Zn-dependent exopeptidases
Rfer_2044	SSF55031	Bacterial exopeptidase dimerisation domain
Rfer_2045	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2046	SSF51161	Trimeric LpxA-like enzymes
Rfer_2047	SSF53383	PLP-dependent transferases
Rfer_2050	SSF46689	Homeodomain-like
Rfer_2051	SSF53807	"Helical backbone" metal receptor
Rfer_2052	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rfer_2053	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2054	SSF46785	"Winged helix" DNA-binding domain
Rfer_2055	SSF103190	Sensory domain-like
Rfer_2055	SSF141868	EAL domain-like
Rfer_2055	SSF55073	Nucleotide cyclase
Rfer_2055	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2058	SSF46785	"Winged helix" DNA-binding domain
Rfer_2058	SSF53850	Periplasmic binding protein-like II
Rfer_2059	SSF50475	FMN-binding split barrel
Rfer_2060	SSF143975	IlvD/EDD N-terminal domain-like
Rfer_2060	SSF52016	LeuD/IlvD-like
Rfer_2061	SSF51569	Aldolase
Rfer_2062	SSF52151	FabD/lysophospholipase-like
Rfer_2064	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_2065	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_2065	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_2065	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_2066	SSF111369	HlyD-like secretion proteins
Rfer_2067	SSF46689	Homeodomain-like
Rfer_2067	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_2068	SSF53067	Actin-like ATPase domain
Rfer_2069	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2070	SSF53474	alpha/beta-Hydrolases
Rfer_2071	SSF109604	HD-domain/PDEase-like
Rfer_2071	SSF55021	ACT-like
Rfer_2071	SSF81271	TGS-like
Rfer_2071	SSF81301	Nucleotidyltransferase
Rfer_2072	SSF53098	Ribonuclease H-like
Rfer_2073	SSF53271	PRTase-like
Rfer_2074	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2075	SSF75625	YebC-like
Rfer_2076	SSF51246	Rudiment single hybrid motif
Rfer_2076	SSF52440	PreATP-grasp domain
Rfer_2076	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2077	SSF102886	Coproporphyrinogen III oxidase
Rfer_2078	SSF52374	Nucleotidylyl transferase
Rfer_2079	SSF81301	Nucleotidyltransferase
Rfer_2080	SSF75217	alpha/beta knot
Rfer_2081	SSF52972	ITPase-like
Rfer_2082	SSF50249	Nucleic acid-binding proteins
Rfer_2084	SSF88713	Glycoside hydrolase/deacetylase
Rfer_2085	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2086	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_2088	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2090	SSF90123	ABC transporter transmembrane region
Rfer_2091	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_2092	SSF52964	TolB, N-terminal domain
Rfer_2092	SSF69304	Tricorn protease N-terminal domain
Rfer_2093	SSF103088	OmpA-like
Rfer_2094	SSF48452	TPR-like
Rfer_2095	SSF69572	Activating enzymes of the ubiquitin-like proteins
Rfer_2097	SSF51569	Aldolase
Rfer_2098	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2099	SSF103473	MFS general substrate transporter
Rfer_2100	SSF54001	Cysteine proteinases
Rfer_2101	SSF51905	FAD/NAD(P)-binding domain
Rfer_2102	SSF111148	YggX-like
Rfer_2104	SSF158442	DsbB-like
Rfer_2105	SSF53633	Carbamate kinase-like
Rfer_2105	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2106	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2107	SSF161070	SNF-like
Rfer_2109	SSF50952	Soluble quinoprotein glucose dehydrogenase
Rfer_2110	SSF46626	Cytochrome c
Rfer_2111	SSF53383	PLP-dependent transferases
Rfer_2112	SSF46785	"Winged helix" DNA-binding domain
Rfer_2112	SSF53850	Periplasmic binding protein-like II
Rfer_2113	SSF53800	Chelatase
Rfer_2116	SSF52949	Macro domain-like
Rfer_2116	SSF53187	Zn-dependent exopeptidases
Rfer_2117	SSF102400	DNA polymerase III chi subunit
Rfer_2119	SSF53822	Periplasmic binding protein-like I
Rfer_2120	SSF53671	Aspartate/ornithine carbamoyltransferase
Rfer_2121	SSF53383	PLP-dependent transferases
Rfer_2122	SSF46992	Ribosomal protein S20
Rfer_2124	SSF117892	Band 7/SPFH domain
Rfer_2126	SSF53383	PLP-dependent transferases
Rfer_2126	SSF55904	Ornithine decarboxylase C-terminal domain
Rfer_2127	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2128	SSF53850	Periplasmic binding protein-like II
Rfer_2129	SSF161098	MetI-like
Rfer_2130	SSF161098	MetI-like
Rfer_2131	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2132	SSF74942	YhbC-like, C-terminal domain
Rfer_2132	SSF75420	YhbC-like, N-terminal domain
Rfer_2133	SSF47794	Rad51 N-terminal domain-like
Rfer_2133	SSF50249	Nucleic acid-binding proteins
Rfer_2133	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rfer_2133	SSF69705	Transcription factor NusA, N-terminal domain
Rfer_2134	SSF46955	Putative DNA-binding domain
Rfer_2134	SSF50447	Translation proteins
Rfer_2134	SSF52156	Initiation factor IF2/eIF5b, domain 3
Rfer_2134	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2135	SSF89919	Ribosome-binding factor A, RbfA
Rfer_2136	SSF55120	Pseudouridine synthase
Rfer_2137	SSF50447	Translation proteins
Rfer_2137	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2137	SSF54980	EF-G C-terminal domain-like
Rfer_2138	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_2139	SSF52096	ClpP/crotonase
Rfer_2141	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2142	SSF55469	FMN-dependent nitroreductase-like
Rfer_2144	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2144	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_2145	SSF47336	ACP-like
Rfer_2145	SSF56801	Acetyl-CoA synthetase-like
Rfer_2145	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_2148	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2149	SSF141322	NfeD domain-like
Rfer_2149	SSF52096	ClpP/crotonase
Rfer_2150	SSF117892	Band 7/SPFH domain
Rfer_2151	SSF54909	Dimeric alpha+beta barrel
Rfer_2152	SSF50182	Sm-like ribonucleoproteins
Rfer_2152	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rfer_2152	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rfer_2153	SSF56024	Phospholipase D/nuclease
Rfer_2154	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rfer_2155	SSF56784	HAD-like
Rfer_2156	SSF51445	(Trans)glycosidases
Rfer_2157	SSF51445	(Trans)glycosidases
Rfer_2157	SSF81296	E set domains
Rfer_2158	SSF51011	Glycosyl hydrolase domain
Rfer_2158	SSF51445	(Trans)glycosidases
Rfer_2158	SSF81296	E set domains
Rfer_2160	SSF51011	Glycosyl hydrolase domain
Rfer_2160	SSF51445	(Trans)glycosidases
Rfer_2160	SSF56112	Protein kinase-like (PK-like)
Rfer_2161	SSF51011	Glycosyl hydrolase domain
Rfer_2161	SSF51445	(Trans)glycosidases
Rfer_2162	SSF51011	Glycosyl hydrolase domain
Rfer_2162	SSF51445	(Trans)glycosidases
Rfer_2162	SSF81296	E set domains
Rfer_2163	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2164	SSF46785	"Winged helix" DNA-binding domain
Rfer_2166	SSF58113	Apolipoprotein A-I
Rfer_2167	SSF103473	MFS general substrate transporter
Rfer_2168	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2171	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2172	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2173	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_2173	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2174	SSF53383	PLP-dependent transferases
Rfer_2175	SSF46600	C-terminal UvrC-binding domain of UvrB
Rfer_2175	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2176	SSF46785	"Winged helix" DNA-binding domain
Rfer_2177	SSF53383	PLP-dependent transferases
Rfer_2178	SSF82649	SufE/NifU
Rfer_2179	SSF89360	HesB-like domain
Rfer_2180	SSF46565	Chaperone J-domain
Rfer_2180	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
Rfer_2181	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Rfer_2181	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Rfer_2181	SSF53067	Actin-like ATPase domain
Rfer_2182	SSF54292	2Fe-2S ferredoxin-like
Rfer_2183	SSF53098	Ribonuclease H-like
Rfer_2184	SSF46548	alpha-helical ferredoxin
Rfer_2184	SSF51971	Nucleotide-binding domain
Rfer_2185	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2186	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2186	SSF52922	TK C-terminal domain-like
Rfer_2187	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rfer_2188	SSF50129	GroES-like
Rfer_2188	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2189	SSF56601	beta-lactamase/transpeptidase-like
Rfer_2191	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_2191	SSF52009	Phosphohistidine domain
Rfer_2191	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2193	SSF54995	Ribosomal protein S6
Rfer_2194	SSF50249	Nucleic acid-binding proteins
Rfer_2195	SSF46911	Ribosomal protein S18
Rfer_2196	SSF55653	Ribosomal protein L9 C-domain
Rfer_2196	SSF55658	L9 N-domain-like
Rfer_2197	SSF51998	PFL-like glycyl radical enzymes
Rfer_2198	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2199	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2200	SSF64383	Cell-division protein ZipA, C-terminal domain
Rfer_2201	SSF47781	RuvA domain 2-like
Rfer_2201	SSF50249	Nucleic acid-binding proteins
Rfer_2201	SSF52113	BRCT domain
Rfer_2201	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rfer_2202	SSF56420	Peptide deformylase
Rfer_2203	SSF56731	DNA primase core
Rfer_2203	SSF57783	Zinc beta-ribbon
Rfer_2204	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2205	SSF51395	FMN-linked oxidoreductases
Rfer_2206	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_2206	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
Rfer_2207	SSF52833	Thioredoxin-like
Rfer_2208	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_2209	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2209	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rfer_2210	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2210	SSF52172	CheY-like
Rfer_2211	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2211	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2211	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2212	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2212	SSF52922	TK C-terminal domain-like
Rfer_2213	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rfer_2213	SSF51230	Single hybrid motif
Rfer_2213	SSF52777	CoA-dependent acyltransferases
Rfer_2214	SSF51230	Single hybrid motif
Rfer_2214	SSF51905	FAD/NAD(P)-binding domain
Rfer_2214	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rfer_2216	SSF53300	vWA-like
Rfer_2217	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2218	SSF51126	Pectin lyase-like
Rfer_2220	SSF141868	EAL domain-like
Rfer_2220	SSF55073	Nucleotide cyclase
Rfer_2222	SSF55144	LigT-like
Rfer_2223	SSF51905	FAD/NAD(P)-binding domain
Rfer_2225	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2227	SSF47413	lambda repressor-like DNA-binding domains
Rfer_2227	SSF48452	TPR-like
Rfer_2227	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2228	SSF46458	Globin-like
Rfer_2229	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2232	SSF55315	L30e-like
Rfer_2232	SSF75217	alpha/beta knot
Rfer_2234	SSF52833	Thioredoxin-like
Rfer_2235	SSF102405	MCP/YpsA-like
Rfer_2239	SSF56801	Acetyl-CoA synthetase-like
Rfer_2240	SSF53271	PRTase-like
Rfer_2241	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rfer_2241	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rfer_2241	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
Rfer_2242	SSF50104	Translation proteins SH3-like domain
Rfer_2242	SSF50249	Nucleic acid-binding proteins
Rfer_2244	SSF46600	C-terminal UvrC-binding domain of UvrB
Rfer_2244	SSF47781	RuvA domain 2-like
Rfer_2244	SSF82771	GIY-YIG endonuclease
Rfer_2246	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_2247	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2248	SSF47729	IHF-like DNA-binding proteins
Rfer_2249	SSF109998	Triger factor/SurA peptide-binding domain-like
Rfer_2249	SSF54534	FKBP-like
Rfer_2252	SSF52833	Thioredoxin-like
Rfer_2253	SSF103025	Folate-binding domain
Rfer_2255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2256	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2258	SSF51556	Metallo-dependent hydrolases
Rfer_2259	SSF48403	Ankyrin repeat
Rfer_2261	SSF47823	lambda integrase-like, N-terminal domain
Rfer_2261	SSF56349	DNA breaking-rejoining enzymes
Rfer_2262	SSF141868	EAL domain-like
Rfer_2262	SSF52172	CheY-like
Rfer_2262	SSF55073	Nucleotide cyclase
Rfer_2262	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2263	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rfer_2263	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2263	SSF52172	CheY-like
Rfer_2263	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2264	SSF53850	Periplasmic binding protein-like II
Rfer_2265	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2267	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_2268	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2268	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2269	SSF51905	FAD/NAD(P)-binding domain
Rfer_2269	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_2269	SSF54862	4Fe-4S ferredoxins
Rfer_2270	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2270	SSF52172	CheY-like
Rfer_2271	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2271	SSF52172	CheY-like
Rfer_2271	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2271	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2272	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_2272	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2273	SSF53901	Thiolase-like
Rfer_2277	SSF51905	FAD/NAD(P)-binding domain
Rfer_2278	SSF46955	Putative DNA-binding domain
Rfer_2278	SSF47413	lambda repressor-like DNA-binding domains
Rfer_2278	SSF51182	RmlC-like cupins
Rfer_2282	SSF52096	ClpP/crotonase
Rfer_2283	SSF56801	Acetyl-CoA synthetase-like
Rfer_2284	SSF49879	SMAD/FHA domain
Rfer_2284	SSF55073	Nucleotide cyclase
Rfer_2285	SSF141986	LD-carboxypeptidase A C-terminal domain-like
Rfer_2285	SSF52317	Class I glutamine amidotransferase-like
Rfer_2286	SSF53474	alpha/beta-Hydrolases
Rfer_2286	SSF53927	Cytidine deaminase-like
Rfer_2287	SSF52317	Class I glutamine amidotransferase-like
Rfer_2287	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2287	SSF54810	GMP synthetase C-terminal dimerisation domain
Rfer_2288	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rfer_2288	SSF54631	CBS-domain pair
Rfer_2290	SSF54285	MoaD/ThiS
Rfer_2291	SSF55961	Bet v1-like
Rfer_2292	SSF102114	Radical SAM enzymes
Rfer_2293	SSF109604	HD-domain/PDEase-like
Rfer_2294	SSF53383	PLP-dependent transferases
Rfer_2295	SSF53271	PRTase-like
Rfer_2296	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2297	SSF55681	Class II aaRS and biotin synthetases
Rfer_2299	SSF117892	Band 7/SPFH domain
Rfer_2300	SSF117892	Band 7/SPFH domain
Rfer_2301	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2302	SSF50182	Sm-like ribonucleoproteins
Rfer_2303	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2304	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rfer_2305	SSF48452	TPR-like
Rfer_2306	SSF52954	Class II aaRS ABD-related
Rfer_2306	SSF55681	Class II aaRS and biotin synthetases
Rfer_2307	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rfer_2309	SSF48452	TPR-like
Rfer_2310	SSF102114	Radical SAM enzymes
Rfer_2311	SSF54919	Nucleoside diphosphate kinase, NDK
Rfer_2312	SSF55120	Pseudouridine synthase
Rfer_2312	SSF55174	Alpha-L RNA-binding motif
Rfer_2313	SSF46785	"Winged helix" DNA-binding domain
Rfer_2314	SSF55120	Pseudouridine synthase
Rfer_2314	SSF55174	Alpha-L RNA-binding motif
Rfer_2315	SSF48452	TPR-like
Rfer_2316	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2317	SSF81606	PP2C-like
Rfer_2318	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2319	SSF51905	FAD/NAD(P)-binding domain
Rfer_2319	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rfer_2320	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rfer_2320	SSF51230	Single hybrid motif
Rfer_2320	SSF52777	CoA-dependent acyltransferases
Rfer_2321	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2322	SSF56801	Acetyl-CoA synthetase-like
Rfer_2323	SSF52499	Isochorismatase-like hydrolases
Rfer_2324	SSF53850	Periplasmic binding protein-like II
Rfer_2325	SSF161098	MetI-like
Rfer_2326	SSF161098	MetI-like
Rfer_2327	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2328	SSF46689	Homeodomain-like
Rfer_2329	SSF82544	GckA/TtuD-like
Rfer_2330	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2331	SSF52266	SGNH hydrolase
Rfer_2332	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_2332	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_2333	SSF51905	FAD/NAD(P)-binding domain
Rfer_2334	SSF53067	Actin-like ATPase domain
Rfer_2335	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_2337	SSF55073	Nucleotide cyclase
Rfer_2337	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2338	SSF48537	Phospholipase C/P1 nuclease
Rfer_2339	SSF53213	LigB-like
Rfer_2340	SSF53474	alpha/beta-Hydrolases
Rfer_2341	SSF54862	4Fe-4S ferredoxins
Rfer_2342	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2345	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rfer_2345	SSF51569	Aldolase
Rfer_2346	SSF56601	beta-lactamase/transpeptidase-like
Rfer_2347	SSF46785	"Winged helix" DNA-binding domain
Rfer_2347	SSF55781	GAF domain-like
Rfer_2348	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2349	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2350	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2351	SSF51395	FMN-linked oxidoreductases
Rfer_2352	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2352	SSF52210	Succinyl-CoA synthetase domains
Rfer_2352	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2352	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2353	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
Rfer_2353	SSF56672	DNA/RNA polymerases
Rfer_2354	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2355	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rfer_2355	SSF52738	Methylesterase CheB, C-terminal domain
Rfer_2355	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2355	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2356	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2356	SSF52172	CheY-like
Rfer_2356	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2356	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2357	SSF52738	Methylesterase CheB, C-terminal domain
Rfer_2358	SSF56300	Metallo-dependent phosphatases
Rfer_2359	SSF111331	NAD kinase/diacylglycerol kinase-like
Rfer_2360	SSF47240	Ferritin-like
Rfer_2361	SSF51182	RmlC-like cupins
Rfer_2365	SSF48557	L-aspartase-like
Rfer_2366	SSF52016	LeuD/IlvD-like
Rfer_2366	SSF53732	Aconitase iron-sulfur domain
Rfer_2368	SSF52218	Flavoproteins
Rfer_2370	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rfer_2371	SSF53474	alpha/beta-Hydrolases
Rfer_2375	SSF47240	Ferritin-like
Rfer_2376	SSF46589	tRNA-binding arm
Rfer_2376	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_2376	SSF50677	ValRS/IleRS/LeuRS editing domain
Rfer_2376	SSF52374	Nucleotidylyl transferase
Rfer_2377	SSF64307	SirA-like
Rfer_2378	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_2379	SSF52833	Thioredoxin-like
Rfer_2380	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2381	SSF51569	Aldolase
Rfer_2382	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2382	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2383	SSF53474	alpha/beta-Hydrolases
Rfer_2384	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2384	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2385	SSF53901	Thiolase-like
Rfer_2386	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_2386	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2386	SSF52096	ClpP/crotonase
Rfer_2387	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2391	SSF53822	Periplasmic binding protein-like I
Rfer_2392	SSF53822	Periplasmic binding protein-like I
Rfer_2393	SSF56801	Acetyl-CoA synthetase-like
Rfer_2394	SSF46785	"Winged helix" DNA-binding domain
Rfer_2394	SSF51206	cAMP-binding domain-like
Rfer_2396	SSF51316	Mss4-like
Rfer_2398	SSF82657	BolA-like
Rfer_2399	SSF109998	Triger factor/SurA peptide-binding domain-like
Rfer_2399	SSF54534	FKBP-like
Rfer_2400	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2400	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2401	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2401	SSF52172	CheY-like
Rfer_2402	SSF53850	Periplasmic binding protein-like II
Rfer_2403	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2403	SSF56327	LDH C-terminal domain-like
Rfer_2404	SSF53474	alpha/beta-Hydrolases
Rfer_2407	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_2408	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_2410	SSF52374	Nucleotidylyl transferase
Rfer_2410	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2411	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2416	SSF53474	alpha/beta-Hydrolases
Rfer_2417	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2418	SSF140990	FtsH protease domain-like
Rfer_2418	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2420	SSF109736	FGAM synthase PurL, linker domain
Rfer_2420	SSF52317	Class I glutamine amidotransferase-like
Rfer_2420	SSF55326	PurM N-terminal domain-like
Rfer_2420	SSF56042	PurM C-terminal domain-like
Rfer_2420	SSF82697	PurS-like
Rfer_2421	SSF55920	Creatinase/aminopeptidase
Rfer_2422	SSF109604	HD-domain/PDEase-like
Rfer_2422	SSF55021	ACT-like
Rfer_2422	SSF81301	Nucleotidyltransferase
Rfer_2422	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rfer_2423	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2423	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_2424	SSF52266	SGNH hydrolase
Rfer_2425	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2426	SSF50182	Sm-like ribonucleoproteins
Rfer_2426	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rfer_2426	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rfer_2428	SSF81330	Gated mechanosensitive channel
Rfer_2429	SSF140804	YidB-like
Rfer_2432	SSF81342	Transmembrane di-heme cytochromes
Rfer_2434	SSF52218	Flavoproteins
Rfer_2436	SSF50475	FMN-binding split barrel
Rfer_2437	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2438	SSF46785	"Winged helix" DNA-binding domain
Rfer_2438	SSF53850	Periplasmic binding protein-like II
Rfer_2439	SSF50129	GroES-like
Rfer_2439	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2440	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2441	SSF51182	RmlC-like cupins
Rfer_2441	SSF69118	AhpD-like
Rfer_2442	SSF53474	alpha/beta-Hydrolases
Rfer_2443	SSF103473	MFS general substrate transporter
Rfer_2444	SSF51430	NAD(P)-linked oxidoreductase
Rfer_2445	SSF51430	NAD(P)-linked oxidoreductase
Rfer_2448	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_2452	SSF52172	CheY-like
Rfer_2453	SSF55781	GAF domain-like
Rfer_2453	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2456	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Rfer_2456	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rfer_2458	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2459	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2460	SSF50447	Translation proteins
Rfer_2460	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rfer_2460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2461	SSF54862	4Fe-4S ferredoxins
Rfer_2462	SSF51905	FAD/NAD(P)-binding domain
Rfer_2464	SSF51905	FAD/NAD(P)-binding domain
Rfer_2464	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_2465	SSF54285	MoaD/ThiS
Rfer_2466	SSF110399	ThiG-like
Rfer_2467	SSF51391	Thiamin phosphate synthase
Rfer_2468	SSF46626	Cytochrome c
Rfer_2470	SSF53613	Ribokinase-like
Rfer_2471	SSF51391	Thiamin phosphate synthase
Rfer_2472	SSF53613	Ribokinase-like
Rfer_2474	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2475	SSF53383	PLP-dependent transferases
Rfer_2476	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_2477	SSF48452	TPR-like
Rfer_2478	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_2478	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2479	SSF56801	Acetyl-CoA synthetase-like
Rfer_2480	SSF55073	Nucleotide cyclase
Rfer_2480	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2481	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2482	SSF109604	HD-domain/PDEase-like
Rfer_2483	SSF158832	Tex N-terminal region-like
Rfer_2483	SSF47781	RuvA domain 2-like
Rfer_2483	SSF50249	Nucleic acid-binding proteins
Rfer_2483	SSF53098	Ribonuclease H-like
Rfer_2484	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2485	SSF141868	EAL domain-like
Rfer_2485	SSF55073	Nucleotide cyclase
Rfer_2486	SSF109604	HD-domain/PDEase-like
Rfer_2486	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2486	SSF55781	GAF domain-like
Rfer_2486	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2487	SSF141868	EAL domain-like
Rfer_2487	SSF52172	CheY-like
Rfer_2487	SSF55073	Nucleotide cyclase
Rfer_2487	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2488	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2489	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2490	SSF47616	GST C-terminal domain-like
Rfer_2490	SSF52833	Thioredoxin-like
Rfer_2491	SSF50129	GroES-like
Rfer_2491	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2492	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2493	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2494	SSF53822	Periplasmic binding protein-like I
Rfer_2495	SSF55073	Nucleotide cyclase
Rfer_2497	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2498	SSF54001	Cysteine proteinases
Rfer_2499	SSF52266	SGNH hydrolase
Rfer_2501	SSF46626	Cytochrome c
Rfer_2504	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2504	SSF52922	TK C-terminal domain-like
Rfer_2505	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2506	SSF55298	YjgF-like
Rfer_2507	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2508	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Rfer_2509	SSF81301	Nucleotidyltransferase
Rfer_2509	SSF81891	Poly A polymerase C-terminal region-like
Rfer_2510	SSF56784	HAD-like
Rfer_2511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2512	SSF55326	PurM N-terminal domain-like
Rfer_2512	SSF56042	PurM C-terminal domain-like
Rfer_2513	SSF103473	MFS general substrate transporter
Rfer_2516	SSF52980	Restriction endonuclease-like
Rfer_2518	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2520	SSF52499	Isochorismatase-like hydrolases
Rfer_2521	SSF52317	Class I glutamine amidotransferase-like
Rfer_2523	SSF46689	Homeodomain-like
Rfer_2523	SSF52317	Class I glutamine amidotransferase-like
Rfer_2524	SSF48452	TPR-like
Rfer_2527	SSF50182	Sm-like ribonucleoproteins
Rfer_2527	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rfer_2527	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rfer_2528	SSF52768	Arginase/deacetylase
Rfer_2529	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2531	SSF54001	Cysteine proteinases
Rfer_2533	SSF46785	"Winged helix" DNA-binding domain
Rfer_2533	SSF53850	Periplasmic binding protein-like II
Rfer_2534	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2536	SSF53213	LigB-like
Rfer_2537	SSF53474	alpha/beta-Hydrolases
Rfer_2540	SSF52172	CheY-like
Rfer_2541	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2541	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2542	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2543	SSF55961	Bet v1-like
Rfer_2544	SSF55073	Nucleotide cyclase
Rfer_2545	SSF53955	Lysozyme-like
Rfer_2546	SSF74982	Small protein B (SmpB)
Rfer_2548	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_2548	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_2550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2552	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_2553	SSF52172	CheY-like
Rfer_2554	SSF53850	Periplasmic binding protein-like II
Rfer_2555	SSF161098	MetI-like
Rfer_2556	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2557	SSF51905	FAD/NAD(P)-binding domain
Rfer_2557	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Rfer_2557	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rfer_2558	SSF50022	ISP domain
Rfer_2559	SSF50692	ADC-like
Rfer_2559	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_2560	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2561	SSF53901	Thiolase-like
Rfer_2562	SSF53474	alpha/beta-Hydrolases
Rfer_2564	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rfer_2566	SSF54909	Dimeric alpha+beta barrel
Rfer_2567	SSF56529	FAH
Rfer_2571	SSF55811	Nudix
Rfer_2572	SSF53098	Ribonuclease H-like
Rfer_2572	SSF82771	GIY-YIG endonuclease
Rfer_2573	SSF52218	Flavoproteins
Rfer_2575	SSF51182	RmlC-like cupins
Rfer_2576	SSF53474	alpha/beta-Hydrolases
Rfer_2577	SSF47598	Ribbon-helix-helix
Rfer_2580	SSF48024	N-terminal domain of DnaB helicase
Rfer_2580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2581	SSF56801	Acetyl-CoA synthetase-like
Rfer_2583	SSF117457	FumA C-terminal domain-like
Rfer_2585	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2586	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2589	SSF53822	Periplasmic binding protein-like I
Rfer_2590	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_2591	SSF52096	ClpP/crotonase
Rfer_2592	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2592	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2593	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2593	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2594	SSF53901	Thiolase-like
Rfer_2595	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_2595	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2595	SSF52096	ClpP/crotonase
Rfer_2596	SSF46785	"Winged helix" DNA-binding domain
Rfer_2596	SSF55781	GAF domain-like
Rfer_2597	SSF53681	Aspartate/glutamate racemase
Rfer_2598	SSF55068	Peptide methionine sulfoxide reductase
Rfer_2599	SSF46689	Homeodomain-like
Rfer_2599	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_2600	SSF111369	HlyD-like secretion proteins
Rfer_2601	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_2601	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_2601	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_2602	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2603	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_2604	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_2606	SSF53383	PLP-dependent transferases
Rfer_2607	SSF48150	DNA-glycosylase
Rfer_2608	SSF55073	Nucleotide cyclase
Rfer_2609	SSF53254	Phosphoglycerate mutase-like
Rfer_2611	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Rfer_2612	SSF52317	Class I glutamine amidotransferase-like
Rfer_2612	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2613	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rfer_2614	SSF102114	Radical SAM enzymes
Rfer_2615	SSF53383	PLP-dependent transferases
Rfer_2617	SSF55469	FMN-dependent nitroreductase-like
Rfer_2618	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2619	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2620	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rfer_2621	SSF53807	"Helical backbone" metal receptor
Rfer_2622	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2623	SSF53807	"Helical backbone" metal receptor
Rfer_2624	SSF52317	Class I glutamine amidotransferase-like
Rfer_2624	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2625	SSF56935	Porins
Rfer_2627	SSF102829	Cell division protein ZapA-like
Rfer_2629	SSF141868	EAL domain-like
Rfer_2629	SSF55073	Nucleotide cyclase
Rfer_2629	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2630	SSF109604	HD-domain/PDEase-like
Rfer_2631	SSF47616	GST C-terminal domain-like
Rfer_2631	SSF52833	Thioredoxin-like
Rfer_2632	SSF52833	Thioredoxin-like
Rfer_2633	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2634	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_2635	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_2636	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2636	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2637	SSF55073	Nucleotide cyclase
Rfer_2637	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2638	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2640	SSF55174	Alpha-L RNA-binding motif
Rfer_2641	SSF101904	GyrA/ParC C-terminal domain-like
Rfer_2641	SSF56719	Type II DNA topoisomerase
Rfer_2642	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_2642	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2642	SSF56719	Type II DNA topoisomerase
Rfer_2644	SSF51197	Clavaminate synthase-like
Rfer_2645	SSF54534	FKBP-like
Rfer_2646	SSF51283	dUTPase-like
Rfer_2647	SSF102645	CoaB-like
Rfer_2647	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rfer_2648	SSF52317	Class I glutamine amidotransferase-like
Rfer_2648	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2649	SSF51569	Aldolase
Rfer_2650	SSF51604	Enolase C-terminal domain-like
Rfer_2650	SSF54826	Enolase N-terminal domain-like
Rfer_2652	SSF118352	HSP33 redox switch-like
Rfer_2652	SSF64397	Hsp33 domain
Rfer_2653	SSF51161	Trimeric LpxA-like enzymes
Rfer_2654	SSF47823	lambda integrase-like, N-terminal domain
Rfer_2654	SSF56349	DNA breaking-rejoining enzymes
Rfer_2657	SSF53955	Lysozyme-like
Rfer_2658	SSF53383	PLP-dependent transferases
Rfer_2660	SSF54523	Pili subunits
Rfer_2664	SSF54523	Pili subunits
Rfer_2665	SSF54523	Pili subunits
Rfer_2666	SSF53597	Dihydrofolate reductase-like
Rfer_2666	SSF53927	Cytidine deaminase-like
Rfer_2667	SSF63380	Riboflavin synthase domain-like
Rfer_2668	SSF142695	RibA-like
Rfer_2668	SSF55821	YrdC/RibB
Rfer_2669	SSF52121	Lumazine synthase
Rfer_2670	SSF48013	NusB-like
Rfer_2671	SSF53383	PLP-dependent transferases
Rfer_2674	SSF74653	TolA/TonB C-terminal domain
Rfer_2675	SSF64005	Undecaprenyl diphosphate synthase
Rfer_2677	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_2678	SSF51182	RmlC-like cupins
Rfer_2679	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2681	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rfer_2681	SSF52374	Nucleotidylyl transferase
Rfer_2682	SSF53383	PLP-dependent transferases
Rfer_2683	SSF53271	PRTase-like
Rfer_2683	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_2685	SSF110997	Sporulation related repeat
Rfer_2686	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_2686	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_2687	SSF52833	Thioredoxin-like
Rfer_2688	SSF51182	RmlC-like cupins
Rfer_2689	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2689	SSF69864	Argininosuccinate synthetase, C-terminal domain
Rfer_2690	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2691	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_2691	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Rfer_2692	SSF89963	YajQ-like
Rfer_2693	SSF109604	HD-domain/PDEase-like
Rfer_2694	SSF52317	Class I glutamine amidotransferase-like
Rfer_2696	SSF55826	YbaK/ProRS associated domain
Rfer_2697	SSF51430	NAD(P)-linked oxidoreductase
Rfer_2698	SSF56801	Acetyl-CoA synthetase-like
Rfer_2699	SSF53474	alpha/beta-Hydrolases
Rfer_2702	SSF56784	HAD-like
Rfer_2703	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_2703	SSF63737	Leukotriene A4 hydrolase N-terminal domain
Rfer_2704	SSF56655	Carbohydrate phosphatase
Rfer_2705	SSF52266	SGNH hydrolase
Rfer_2706	SSF56935	Porins
Rfer_2708	SSF46689	Homeodomain-like
Rfer_2709	SSF46689	Homeodomain-like
Rfer_2714	SSF111369	HlyD-like secretion proteins
Rfer_2715	SSF49313	Cadherin-like
Rfer_2715	SSF51120	beta-Roll
Rfer_2715	SSF53474	alpha/beta-Hydrolases
Rfer_2717	SSF51120	beta-Roll
Rfer_2717	SSF53474	alpha/beta-Hydrolases
Rfer_2719	SSF51120	beta-Roll
Rfer_2719	SSF53474	alpha/beta-Hydrolases
Rfer_2721	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2722	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2722	SSF90123	ABC transporter transmembrane region
Rfer_2727	SSF50952	Soluble quinoprotein glucose dehydrogenase
Rfer_2728	SSF109604	HD-domain/PDEase-like
Rfer_2728	SSF55781	GAF domain-like
Rfer_2728	SSF56112	Protein kinase-like (PK-like)
Rfer_2729	SSF56796	Dehydroquinate synthase-like
Rfer_2732	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_2732	SSF52172	CheY-like
Rfer_2733	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2733	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2734	SSF102114	Radical SAM enzymes
Rfer_2735	SSF52172	CheY-like
Rfer_2736	SSF46626	Cytochrome c
Rfer_2737	SSF52172	CheY-like
Rfer_2738	SSF52172	CheY-like
Rfer_2739	SSF48695	Multiheme cytochromes
Rfer_2740	SSF81342	Transmembrane di-heme cytochromes
Rfer_2741	SSF46689	Homeodomain-like
Rfer_2741	SSF52172	CheY-like
Rfer_2741	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2742	SSF158472	HAMP domain-like
Rfer_2742	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2742	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2743	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2743	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_2744	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_2745	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_2746	SSF161098	MetI-like
Rfer_2747	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2748	SSF53850	Periplasmic binding protein-like II
Rfer_2749	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2752	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2752	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2753	SSF53901	Thiolase-like
Rfer_2754	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_2754	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2754	SSF52096	ClpP/crotonase
Rfer_2755	SSF109604	HD-domain/PDEase-like
Rfer_2758	SSF53850	Periplasmic binding protein-like II
Rfer_2759	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2759	SSF81923	Double Clp-N motif
Rfer_2760	SSF54736	ClpS-like
Rfer_2761	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2764	SSF53613	Ribokinase-like
Rfer_2765	SSF55120	Pseudouridine synthase
Rfer_2766	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2766	SSF52172	CheY-like
Rfer_2766	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2766	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2768	SSF52317	Class I glutamine amidotransferase-like
Rfer_2769	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_2770	SSF53901	Thiolase-like
Rfer_2771	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2773	SSF109604	HD-domain/PDEase-like
Rfer_2774	SSF55961	Bet v1-like
Rfer_2775	SSF143744	GlcG-like
Rfer_2778	SSF50249	Nucleic acid-binding proteins
Rfer_2778	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2779	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_2779	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_2780	SSF51261	Duplicated hybrid motif
Rfer_2781	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2782	SSF64167	SurE-like
Rfer_2783	SSF50129	GroES-like
Rfer_2783	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2784	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_2785	SSF74650	Galactose mutarotase-like
Rfer_2785	SSF81296	E set domains
Rfer_2786	SSF46689	Homeodomain-like
Rfer_2786	SSF52172	CheY-like
Rfer_2786	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2788	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2788	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2789	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_2790	SSF103473	MFS general substrate transporter
Rfer_2791	SSF103473	MFS general substrate transporter
Rfer_2792	SSF50692	ADC-like
Rfer_2792	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_2793	SSF54862	4Fe-4S ferredoxins
Rfer_2794	SSF89155	TorD-like
Rfer_2795	SSF103501	Respiratory nitrate reductase 1 gamma chain
Rfer_2796	SSF54534	FKBP-like
Rfer_2797	SSF54631	CBS-domain pair
Rfer_2798	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2799	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2799	SSF52922	TK C-terminal domain-like
Rfer_2799	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rfer_2800	SSF51971	Nucleotide-binding domain
Rfer_2800	SSF54862	4Fe-4S ferredoxins
Rfer_2801	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_2802	SSF51230	Single hybrid motif
Rfer_2802	SSF51246	Rudiment single hybrid motif
Rfer_2802	SSF52440	PreATP-grasp domain
Rfer_2802	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2803	SSF52096	ClpP/crotonase
Rfer_2804	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2805	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rfer_2805	SSF52242	Cobalamin (vitamin B12)-binding domain
Rfer_2806	SSF46785	"Winged helix" DNA-binding domain
Rfer_2806	SSF48008	GntR ligand-binding domain-like
Rfer_2810	SSF53822	Periplasmic binding protein-like I
Rfer_2811	SSF47598	Ribbon-helix-helix
Rfer_2811	SSF51730	FAD-linked oxidoreductase
Rfer_2811	SSF53720	ALDH-like
Rfer_2811	SSF81935	N-terminal domain of bifunctional PutA protein
Rfer_2815	SSF51230	Single hybrid motif
Rfer_2815	SSF51246	Rudiment single hybrid motif
Rfer_2815	SSF52440	PreATP-grasp domain
Rfer_2815	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_2816	SSF52096	ClpP/crotonase
Rfer_2817	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_2817	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_2818	SSF52096	ClpP/crotonase
Rfer_2819	SSF55718	SCP-like
Rfer_2820	SSF46955	Putative DNA-binding domain
Rfer_2825	SSF89807	Dodecin-like
Rfer_2826	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_2827	SSF53098	Ribonuclease H-like
Rfer_2828	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2829	SSF56784	HAD-like
Rfer_2830	SSF56349	DNA breaking-rejoining enzymes
Rfer_2833	SSF57783	Zinc beta-ribbon
Rfer_2837	SSF56563	Major capsid protein gp5
Rfer_2842	SSF55144	LigT-like
Rfer_2843	SSF53597	Dihydrofolate reductase-like
Rfer_2844	SSF55326	PurM N-terminal domain-like
Rfer_2844	SSF56042	PurM C-terminal domain-like
Rfer_2845	SSF56801	Acetyl-CoA synthetase-like
Rfer_2846	SSF53474	alpha/beta-Hydrolases
Rfer_2848	SSF54285	MoaD/ThiS
Rfer_2849	SSF51905	FAD/NAD(P)-binding domain
Rfer_2850	SSF48310	Aldehyde ferredoxin oxidoreductase, C-terminal domains
Rfer_2850	SSF56228	Aldehyde ferredoxin oxidoreductase, N-terminal domain
Rfer_2851	SSF54862	4Fe-4S ferredoxins
Rfer_2853	SSF47175	Cytochromes
Rfer_2854	SSF46689	Homeodomain-like
Rfer_2854	SSF52172	CheY-like
Rfer_2854	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2855	SSF103190	Sensory domain-like
Rfer_2855	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2855	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2856	SSF46689	Homeodomain-like
Rfer_2856	SSF55781	GAF domain-like
Rfer_2857	SSF46785	"Winged helix" DNA-binding domain
Rfer_2857	SSF50331	MOP-like
Rfer_2858	SSF53850	Periplasmic binding protein-like II
Rfer_2859	SSF161098	MetI-like
Rfer_2860	SSF50331	MOP-like
Rfer_2860	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2861	SSF52317	Class I glutamine amidotransferase-like
Rfer_2864	SSF46689	Homeodomain-like
Rfer_2864	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2865	SSF56796	Dehydroquinate synthase-like
Rfer_2866	SSF53720	ALDH-like
Rfer_2867	SSF53850	Periplasmic binding protein-like II
Rfer_2868	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2869	SSF161098	MetI-like
Rfer_2870	SSF46785	"Winged helix" DNA-binding domain
Rfer_2870	SSF53850	Periplasmic binding protein-like II
Rfer_2874	SSF53850	Periplasmic binding protein-like II
Rfer_2875	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_2875	SSF52922	TK C-terminal domain-like
Rfer_2876	SSF48576	Terpenoid synthases
Rfer_2877	SSF116842	XseB-like
Rfer_2878	SSF50022	ISP domain
Rfer_2878	SSF55961	Bet v1-like
Rfer_2879	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_2880	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_2881	SSF48695	Multiheme cytochromes
Rfer_2882	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rfer_2882	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rfer_2883	SSF53790	Tetrapyrrole methylase
Rfer_2884	SSF160996	HI0933 insert domain-like
Rfer_2884	SSF51905	FAD/NAD(P)-binding domain
Rfer_2886	SSF89095	GatB/YqeY motif
Rfer_2887	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rfer_2888	SSF158710	PSPTO4464-like
Rfer_2889	SSF53218	Molybdenum cofactor biosynthesis proteins
Rfer_2890	SSF51161	Trimeric LpxA-like enzymes
Rfer_2891	SSF75217	alpha/beta knot
Rfer_2892	SSF56655	Carbohydrate phosphatase
Rfer_2893	SSF141868	EAL domain-like
Rfer_2893	SSF55073	Nucleotide cyclase
Rfer_2893	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2894	SSF46626	Cytochrome c
Rfer_2895	SSF160996	HI0933 insert domain-like
Rfer_2895	SSF51905	FAD/NAD(P)-binding domain
Rfer_2896	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2897	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2898	SSF52833	Thioredoxin-like
Rfer_2899	SSF50249	Nucleic acid-binding proteins
Rfer_2899	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2899	SSF68912	Rho N-terminal domain-like
Rfer_2900	SSF143800	L28p-like
Rfer_2902	SSF160246	EspE N-terminal domain-like
Rfer_2902	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2906	SSF160950	YacF-like
Rfer_2907	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_2908	SSF55811	Nudix
Rfer_2909	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2910	SSF56266	DmpA/ArgJ-like
Rfer_2911	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2911	SSF81767	Pre-protein crosslinking domain of SecA
Rfer_2911	SSF81886	Helical scaffold and wing domains of SecA
Rfer_2912	SSF51261	Duplicated hybrid motif
Rfer_2914	SSF56524	Oxidoreductase molybdopterin-binding domain
Rfer_2916	SSF50621	Alanine racemase C-terminal domain-like
Rfer_2916	SSF51419	PLP-binding barrel
Rfer_2917	SSF55387	Frataxin/Nqo15-like
Rfer_2918	SSF53955	Lysozyme-like
Rfer_2918	SSF56601	beta-lactamase/transpeptidase-like
Rfer_2919	SSF53067	Actin-like ATPase domain
Rfer_2924	SSF49373	Invasin/intimin cell-adhesion fragments
Rfer_2925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2926	SSF56796	Dehydroquinate synthase-like
Rfer_2927	SSF109604	HD-domain/PDEase-like
Rfer_2928	SSF55205	EPT/RTPC-like
Rfer_2930	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_2932	SSF143422	Transposase IS200-like
Rfer_2933	SSF51395	FMN-linked oxidoreductases
Rfer_2933	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_2933	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
Rfer_2934	SSF46548	alpha-helical ferredoxin
Rfer_2934	SSF51971	Nucleotide-binding domain
Rfer_2935	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2940	SSF52091	SpoIIaa-like
Rfer_2941	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2943	SSF82657	BolA-like
Rfer_2944	SSF55205	EPT/RTPC-like
Rfer_2945	SSF53850	Periplasmic binding protein-like II
Rfer_2946	SSF53720	ALDH-like
Rfer_2947	SSF53383	PLP-dependent transferases
Rfer_2948	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_2949	SSF52317	Class I glutamine amidotransferase-like
Rfer_2950	SSF51366	Ribulose-phoshate binding barrel
Rfer_2951	SSF51366	Ribulose-phoshate binding barrel
Rfer_2952	SSF141734	HisI-like
Rfer_2953	SSF101386	all-alpha NTP pyrophosphatases
Rfer_2955	SSF54197	HIT-like
Rfer_2959	SSF50156	PDZ domain-like
Rfer_2959	SSF50494	Trypsin-like serine proteases
Rfer_2961	SSF102705	NIF3 (NGG1p interacting factor 3)-like
Rfer_2962	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2963	SSF81330	Gated mechanosensitive channel
Rfer_2964	SSF50022	ISP domain
Rfer_2965	SSF81342	Transmembrane di-heme cytochromes
Rfer_2965	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Rfer_2966	SSF46626	Cytochrome c
Rfer_2967	SSF47616	GST C-terminal domain-like
Rfer_2967	SSF52833	Thioredoxin-like
Rfer_2968	SSF101738	SspB-like
Rfer_2969	SSF53850	Periplasmic binding protein-like II
Rfer_2970	SSF161098	MetI-like
Rfer_2971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2972	SSF53474	alpha/beta-Hydrolases
Rfer_2974	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_2974	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_2975	SSF53067	Actin-like ATPase domain
Rfer_2976	SSF55120	Pseudouridine synthase
Rfer_2978	SSF53218	Molybdenum cofactor biosynthesis proteins
Rfer_2979	SSF54368	Glutamine synthetase, N-terminal domain
Rfer_2979	SSF55931	Glutamine synthetase/guanido kinase
Rfer_2981	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_2981	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_2981	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_2982	SSF46689	Homeodomain-like
Rfer_2982	SSF52172	CheY-like
Rfer_2982	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_2983	SSF56219	DNase I-like
Rfer_2985	SSF53597	Dihydrofolate reductase-like
Rfer_2986	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
Rfer_2987	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
Rfer_2989	SSF55103	FAD-linked oxidases, C-terminal domain
Rfer_2989	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_2992	SSF53955	Lysozyme-like
Rfer_2992	SSF56601	beta-lactamase/transpeptidase-like
Rfer_2993	SSF53774	Glutaminase/Asparaginase
Rfer_2994	SSF46785	"Winged helix" DNA-binding domain
Rfer_2994	SSF51306	LexA/Signal peptidase
Rfer_2996	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_2996	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_2997	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2998	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_2999	SSF53738	Phosphoglucomutase, first 3 domains
Rfer_2999	SSF55957	Phosphoglucomutase, C-terminal domain
Rfer_3000	SSF46689	Homeodomain-like
Rfer_3000	SSF48150	DNA-glycosylase
Rfer_3000	SSF55945	TATA-box binding protein-like
Rfer_3000	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
Rfer_3001	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rfer_3001	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rfer_3002	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3003	SSF69118	AhpD-like
Rfer_3005	SSF49764	HSP20-like chaperones
Rfer_3006	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3006	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3006	SSF88697	PUA domain-like
Rfer_3009	SSF48592	GroEL equatorial domain-like
Rfer_3009	SSF52029	GroEL apical domain-like
Rfer_3009	SSF54849	GroEL-intermediate domain like
Rfer_3011	SSF51998	PFL-like glycyl radical enzymes
Rfer_3012	SSF55073	Nucleotide cyclase
Rfer_3012	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3013	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rfer_3013	SSF52738	Methylesterase CheB, C-terminal domain
Rfer_3013	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3013	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3014	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3015	SSF64288	Chorismate lyase-like
Rfer_3017	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3018	SSF51905	FAD/NAD(P)-binding domain
Rfer_3018	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_3018	SSF54862	4Fe-4S ferredoxins
Rfer_3019	SSF101790	Aminomethyltransferase beta-barrel domain
Rfer_3019	SSF103025	Folate-binding domain
Rfer_3020	SSF51230	Single hybrid motif
Rfer_3021	SSF53383	PLP-dependent transferases
Rfer_3023	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3024	SSF51395	FMN-linked oxidoreductases
Rfer_3025	SSF51206	cAMP-binding domain-like
Rfer_3026	SSF54631	CBS-domain pair
Rfer_3026	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_3027	SSF56300	Metallo-dependent phosphatases
Rfer_3028	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3031	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rfer_3031	SSF51905	FAD/NAD(P)-binding domain
Rfer_3031	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rfer_3032	SSF50692	ADC-like
Rfer_3033	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_3034	SSF52374	Nucleotidylyl transferase
Rfer_3035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3037	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rfer_3038	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_3038	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3039	SSF56349	DNA breaking-rejoining enzymes
Rfer_3040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3040	SSF52980	Restriction endonuclease-like
Rfer_3041	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3042	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3043	SSF56300	Metallo-dependent phosphatases
Rfer_3046	SSF46785	"Winged helix" DNA-binding domain
Rfer_3052	SSF52490	Tubulin nucleotide-binding domain-like
Rfer_3054	SSF143081	BB1717-like
Rfer_3061	SSF46689	Homeodomain-like
Rfer_3066	SSF47413	lambda repressor-like DNA-binding domains
Rfer_3070	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_3070	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_3071	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3073	SSF53187	Zn-dependent exopeptidases
Rfer_3075	SSF52980	Restriction endonuclease-like
Rfer_3077	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3079	SSF102114	Radical SAM enzymes
Rfer_3082	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3082	SSF52172	CheY-like
Rfer_3083	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3083	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3084	SSF50692	ADC-like
Rfer_3084	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3085	SSF50022	ISP domain
Rfer_3086	SSF53850	Periplasmic binding protein-like II
Rfer_3087	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3087	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3088	SSF46689	Homeodomain-like
Rfer_3088	SSF52172	CheY-like
Rfer_3088	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3089	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3090	SSF54862	4Fe-4S ferredoxins
Rfer_3091	SSF89155	TorD-like
Rfer_3092	SSF48695	Multiheme cytochromes
Rfer_3093	SSF54862	4Fe-4S ferredoxins
Rfer_3094	SSF50692	ADC-like
Rfer_3094	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3095	SSF53850	Periplasmic binding protein-like II
Rfer_3096	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3096	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3097	SSF46689	Homeodomain-like
Rfer_3097	SSF52172	CheY-like
Rfer_3097	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3100	SSF46689	Homeodomain-like
Rfer_3100	SSF53697	SIS domain
Rfer_3101	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_3102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3103	SSF53850	Periplasmic binding protein-like II
Rfer_3104	SSF161098	MetI-like
Rfer_3105	SSF161098	MetI-like
Rfer_3106	SSF56266	DmpA/ArgJ-like
Rfer_3107	SSF63992	Dipeptide transport protein
Rfer_3108	SSF53681	Aspartate/glutamate racemase
Rfer_3112	SSF47616	GST C-terminal domain-like
Rfer_3112	SSF52833	Thioredoxin-like
Rfer_3114	SSF161098	MetI-like
Rfer_3115	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3116	SSF53850	Periplasmic binding protein-like II
Rfer_3117	SSF56935	Porins
Rfer_3118	SSF53850	Periplasmic binding protein-like II
Rfer_3119	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3120	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3120	SSF52172	CheY-like
Rfer_3121	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3121	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3123	SSF81342	Transmembrane di-heme cytochromes
Rfer_3124	SSF46626	Cytochrome c
Rfer_3127	SSF46785	"Winged helix" DNA-binding domain
Rfer_3127	SSF55781	GAF domain-like
Rfer_3128	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3131	SSF53822	Periplasmic binding protein-like I
Rfer_3132	SSF56935	Porins
Rfer_3133	SSF56529	FAH
Rfer_3134	SSF51604	Enolase C-terminal domain-like
Rfer_3134	SSF54826	Enolase N-terminal domain-like
Rfer_3135	SSF51556	Metallo-dependent hydrolases
Rfer_3136	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3137	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3138	SSF54909	Dimeric alpha+beta barrel
Rfer_3139	SSF53901	Thiolase-like
Rfer_3140	SSF46689	Homeodomain-like
Rfer_3140	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3141	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3142	SSF102405	MCP/YpsA-like
Rfer_3143	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3144	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_3144	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_3145	SSF69118	AhpD-like
Rfer_3146	SSF51182	RmlC-like cupins
Rfer_3147	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3148	SSF63562	RPB6/omega subunit-like
Rfer_3149	SSF109604	HD-domain/PDEase-like
Rfer_3149	SSF55021	ACT-like
Rfer_3149	SSF81271	TGS-like
Rfer_3149	SSF81301	Nucleotidyltransferase
Rfer_3150	SSF46557	GreA transcript cleavage protein, N-terminal domain
Rfer_3150	SSF54534	FKBP-like
Rfer_3151	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
Rfer_3151	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
Rfer_3155	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3156	SSF158997	Trm112p-like
Rfer_3157	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_3158	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3159	SSF53474	alpha/beta-Hydrolases
Rfer_3160	SSF53383	PLP-dependent transferases
Rfer_3161	SSF103263	Chorismate synthase, AroC
Rfer_3162	SSF57652	HIPIP (high potential iron protein)
Rfer_3164	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rfer_3166	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3167	SSF110997	Sporulation related repeat
Rfer_3168	SSF46785	"Winged helix" DNA-binding domain
Rfer_3168	SSF51206	cAMP-binding domain-like
Rfer_3169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3173	SSF74653	TolA/TonB C-terminal domain
Rfer_3175	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_3176	SSF48019	post-AAA+ oligomerization domain-like
Rfer_3176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3177	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Rfer_3178	SSF46785	"Winged helix" DNA-binding domain
Rfer_3178	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3179	SSF51905	FAD/NAD(P)-binding domain
Rfer_3180	SSF143800	L28p-like
Rfer_3181	SSF57829	Zn-binding ribosomal proteins
Rfer_3183	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3184	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_3185	SSF111369	HlyD-like secretion proteins
Rfer_3186	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3189	SSF53474	alpha/beta-Hydrolases
Rfer_3190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3191	SSF46626	Cytochrome c
Rfer_3192	SSF141868	EAL domain-like
Rfer_3192	SSF55073	Nucleotide cyclase
Rfer_3192	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3194	SSF53850	Periplasmic binding protein-like II
Rfer_3195	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3196	SSF143631	ApbE-like
Rfer_3197	SSF46626	Cytochrome c
Rfer_3198	SSF54862	4Fe-4S ferredoxins
Rfer_3199	SSF49503	Cupredoxins
Rfer_3199	SSF50974	Nitrous oxide reductase, N-terminal domain
Rfer_3200	SSF51126	Pectin lyase-like
Rfer_3201	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3203	SSF160387	NosL/MerB-like
Rfer_3206	SSF160387	NosL/MerB-like
Rfer_3207	SSF160387	NosL/MerB-like
Rfer_3208	SSF46548	alpha-helical ferredoxin
Rfer_3208	SSF51971	Nucleotide-binding domain
Rfer_3208	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_3208	SSF63380	Riboflavin synthase domain-like
Rfer_3209	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3209	SSF52922	TK C-terminal domain-like
Rfer_3209	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rfer_3209	SSF54862	4Fe-4S ferredoxins
Rfer_3210	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3214	SSF160246	EspE N-terminal domain-like
Rfer_3214	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3215	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3216	SSF52141	Uracil-DNA glycosylase-like
Rfer_3217	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3218	SSF69572	Activating enzymes of the ubiquitin-like proteins
Rfer_3220	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3221	SSF51556	Metallo-dependent hydrolases
Rfer_3222	SSF53850	Periplasmic binding protein-like II
Rfer_3223	SSF50331	MOP-like
Rfer_3223	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3224	SSF161098	MetI-like
Rfer_3225	SSF161098	MetI-like
Rfer_3226	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3227	SSF47413	lambda repressor-like DNA-binding domains
Rfer_3227	SSF51182	RmlC-like cupins
Rfer_3228	SSF53720	ALDH-like
Rfer_3229	SSF51905	FAD/NAD(P)-binding domain
Rfer_3230	SSF53822	Periplasmic binding protein-like I
Rfer_3231	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3234	SSF64182	DHH phosphoesterases
Rfer_3235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3235	SSF81901	HCP-like
Rfer_3236	SSF89550	PHP domain-like
Rfer_3237	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3238	SSF55821	YrdC/RibB
Rfer_3240	SSF160113	YegP-like
Rfer_3240	SSF52374	Nucleotidylyl transferase
Rfer_3241	SSF103190	Sensory domain-like
Rfer_3241	SSF158472	HAMP domain-like
Rfer_3241	SSF55073	Nucleotide cyclase
Rfer_3242	SSF53850	Periplasmic binding protein-like II
Rfer_3243	SSF46589	tRNA-binding arm
Rfer_3243	SSF55681	Class II aaRS and biotin synthetases
Rfer_3244	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3245	SSF161098	MetI-like
Rfer_3246	SSF53850	Periplasmic binding protein-like II
Rfer_3247	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3249	SSF54534	FKBP-like
Rfer_3250	SSF141868	EAL domain-like
Rfer_3250	SSF55073	Nucleotide cyclase
Rfer_3250	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3251	SSF53850	Periplasmic binding protein-like II
Rfer_3252	SSF102712	JAB1/MPN domain
Rfer_3252	SSF47781	RuvA domain 2-like
Rfer_3253	SSF160443	SMR domain-like
Rfer_3254	SSF46458	Globin-like
Rfer_3256	SSF53927	Cytidine deaminase-like
Rfer_3258	SSF81342	Transmembrane di-heme cytochromes
Rfer_3260	SSF54862	4Fe-4S ferredoxins
Rfer_3261	SSF50692	ADC-like
Rfer_3261	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3263	SSF89155	TorD-like
Rfer_3264	SSF54862	4Fe-4S ferredoxins
Rfer_3267	SSF47616	GST C-terminal domain-like
Rfer_3267	SSF52833	Thioredoxin-like
Rfer_3268	SSF52317	Class I glutamine amidotransferase-like
Rfer_3269	SSF50692	ADC-like
Rfer_3269	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3269	SSF54292	2Fe-2S ferredoxin-like
Rfer_3269	SSF54862	4Fe-4S ferredoxins
Rfer_3270	SSF140490	Nqo1C-terminal domain-like
Rfer_3270	SSF142019	Nqo1 FMN-binding domain-like
Rfer_3270	SSF142984	Nqo1 middle domain-like
Rfer_3270	SSF52833	Thioredoxin-like
Rfer_3272	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rfer_3272	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3273	SSF52151	FabD/lysophospholipase-like
Rfer_3274	SSF69047	Hypothetical protein YjbJ
Rfer_3275	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rfer_3275	SSF50249	Nucleic acid-binding proteins
Rfer_3275	SSF52374	Nucleotidylyl transferase
Rfer_3275	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
Rfer_3280	SSF143243	Nqo5-like
Rfer_3280	SSF56762	HydB/Nqo4-like
Rfer_3281	SSF54862	4Fe-4S ferredoxins
Rfer_3281	SSF56770	HydA/Nqo6-like
Rfer_3282	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3282	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3283	SSF53901	Thiolase-like
Rfer_3284	SSF56801	Acetyl-CoA synthetase-like
Rfer_3285	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3286	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3287	SSF56770	HydA/Nqo6-like
Rfer_3288	SSF143243	Nqo5-like
Rfer_3288	SSF56762	HydB/Nqo4-like
Rfer_3293	SSF51283	dUTPase-like
Rfer_3295	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_3295	SSF51556	Metallo-dependent hydrolases
Rfer_3297	SSF51556	Metallo-dependent hydrolases
Rfer_3298	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3299	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rfer_3299	SSF54292	2Fe-2S ferredoxin-like
Rfer_3299	SSF63380	Riboflavin synthase domain-like
Rfer_3300	SSF53850	Periplasmic binding protein-like II
Rfer_3301	SSF46548	alpha-helical ferredoxin
Rfer_3302	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3303	SSF53187	Zn-dependent exopeptidases
Rfer_3307	SSF49503	Cupredoxins
Rfer_3308	SSF118116	DNA mismatch repair protein MutL
Rfer_3308	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3308	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3311	SSF51905	FAD/NAD(P)-binding domain
Rfer_3311	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_3312	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3313	SSF53474	alpha/beta-Hydrolases
Rfer_3314	SSF56322	ADC synthase
Rfer_3314	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rfer_3315	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3315	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3316	SSF51679	Bacterial luciferase-like
Rfer_3321	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_3321	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_3322	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_3322	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3323	SSF55021	ACT-like
Rfer_3324	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_3324	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3326	SSF46785	"Winged helix" DNA-binding domain
Rfer_3326	SSF51206	cAMP-binding domain-like
Rfer_3327	SSF56112	Protein kinase-like (PK-like)
Rfer_3328	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3328	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3329	SSF109604	HD-domain/PDEase-like
Rfer_3330	SSF48452	TPR-like
Rfer_3331	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3336	SSF53067	Actin-like ATPase domain
Rfer_3337	SSF49899	Concanavalin A-like lectins/glucanases
Rfer_3339	SSF54523	Pili subunits
Rfer_3341	SSF54523	Pili subunits
Rfer_3342	SSF47446	Signal peptide-binding domain
Rfer_3342	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3344	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3344	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3344	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3345	SSF46689	Homeodomain-like
Rfer_3345	SSF52172	CheY-like
Rfer_3345	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3346	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
Rfer_3347	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
Rfer_3347	SSF51998	PFL-like glycyl radical enzymes
Rfer_3348	SSF47240	Ferritin-like
Rfer_3351	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3352	SSF51246	Rudiment single hybrid motif
Rfer_3352	SSF52440	PreATP-grasp domain
Rfer_3352	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3353	SSF51230	Single hybrid motif
Rfer_3354	SSF52833	Thioredoxin-like
Rfer_3356	SSF51984	MurCD N-terminal domain
Rfer_3356	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_3356	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_3357	SSF158855	Lipase chaperone-like
Rfer_3358	SSF53474	alpha/beta-Hydrolases
Rfer_3360	SSF160246	EspE N-terminal domain-like
Rfer_3360	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3363	SSF54523	Pili subunits
Rfer_3365	SSF102114	Radical SAM enzymes
Rfer_3367	SSF51569	Aldolase
Rfer_3369	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rfer_3370	SSF141868	EAL domain-like
Rfer_3370	SSF55073	Nucleotide cyclase
Rfer_3370	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3372	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3373	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3373	SSF52172	CheY-like
Rfer_3375	SSF53474	alpha/beta-Hydrolases
Rfer_3377	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3378	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3381	SSF53822	Periplasmic binding protein-like I
Rfer_3382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3383	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3385	SSF47413	lambda repressor-like DNA-binding domains
Rfer_3386	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_3387	SSF50475	FMN-binding split barrel
Rfer_3388	SSF82784	OsmC-like
Rfer_3389	SSF69118	AhpD-like
Rfer_3390	SSF46689	Homeodomain-like
Rfer_3391	SSF109604	HD-domain/PDEase-like
Rfer_3391	SSF53850	Periplasmic binding protein-like II
Rfer_3391	SSF55781	GAF domain-like
Rfer_3391	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3392	SSF54285	MoaD/ThiS
Rfer_3393	SSF110296	Oligoxyloglucan reducing end-specific cellobiohydrolase
Rfer_3395	SSF141868	EAL domain-like
Rfer_3395	SSF48452	TPR-like
Rfer_3395	SSF55073	Nucleotide cyclase
Rfer_3395	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3396	SSF56935	Porins
Rfer_3397	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3397	SSF52172	CheY-like
Rfer_3398	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3398	SSF52172	CheY-like
Rfer_3398	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3399	SSF54111	Urease, gamma-subunit
Rfer_3400	SSF51278	Urease, beta-subunit
Rfer_3402	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_3402	SSF51556	Metallo-dependent hydrolases
Rfer_3403	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3404	SSF140931	Fic-like
Rfer_3405	SSF89447	AbrB/MazE/MraZ-like
Rfer_3406	SSF69287	Urease metallochaperone UreE, N-terminal domain
Rfer_3406	SSF69737	Urease metallochaperone UreE, C-terminal domain
Rfer_3408	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3409	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_3410	SSF52788	Phosphotyrosine protein phosphatases I
Rfer_3411	SSF50249	Nucleic acid-binding proteins
Rfer_3412	SSF74653	TolA/TonB C-terminal domain
Rfer_3413	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3413	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rfer_3414	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3416	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3417	SSF53098	Ribonuclease H-like
Rfer_3419	SSF53955	Lysozyme-like
Rfer_3420	SSF52490	Tubulin nucleotide-binding domain-like
Rfer_3420	SSF55307	Tubulin C-terminal domain-like
Rfer_3421	SSF53067	Actin-like ATPase domain
Rfer_3423	SSF52440	PreATP-grasp domain
Rfer_3423	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3424	SSF51984	MurCD N-terminal domain
Rfer_3424	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_3424	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_3425	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_3427	SSF51984	MurCD N-terminal domain
Rfer_3427	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_3427	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_3429	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_3429	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_3429	SSF63418	MurE/MurF N-terminal domain
Rfer_3430	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rfer_3430	SSF53623	MurD-like peptide ligases, catalytic domain
Rfer_3430	SSF63418	MurE/MurF N-terminal domain
Rfer_3431	SSF56519	Penicillin binding protein dimerisation domain
Rfer_3431	SSF56601	beta-lactamase/transpeptidase-like
Rfer_3433	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3433	SSF81799	Putative methyltransferase TM0872, insert domain
Rfer_3434	SSF89447	AbrB/MazE/MraZ-like
Rfer_3435	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3436	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_3437	SSF52091	SpoIIaa-like
Rfer_3438	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
Rfer_3438	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_3439	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3439	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rfer_3440	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3440	SSF88697	PUA domain-like
Rfer_3442	SSF47823	lambda integrase-like, N-terminal domain
Rfer_3442	SSF56349	DNA breaking-rejoining enzymes
Rfer_3444	SSF54506	Diaminopimelate epimerase-like
Rfer_3445	SSF101386	all-alpha NTP pyrophosphatases
Rfer_3446	SSF55811	Nudix
Rfer_3446	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_3449	SSF103190	Sensory domain-like
Rfer_3449	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3453	SSF46689	Homeodomain-like
Rfer_3453	SSF52172	CheY-like
Rfer_3453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3454	SSF103190	Sensory domain-like
Rfer_3454	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3454	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3455	SSF118215	Proton glutamate symport protein
Rfer_3456	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rfer_3457	SSF55120	Pseudouridine synthase
Rfer_3457	SSF55174	Alpha-L RNA-binding motif
Rfer_3458	SSF46785	"Winged helix" DNA-binding domain
Rfer_3458	SSF53850	Periplasmic binding protein-like II
Rfer_3459	SSF46785	"Winged helix" DNA-binding domain
Rfer_3460	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rfer_3461	SSF51905	FAD/NAD(P)-binding domain
Rfer_3464	SSF51556	Metallo-dependent hydrolases
Rfer_3465	SSF46785	"Winged helix" DNA-binding domain
Rfer_3465	SSF53850	Periplasmic binding protein-like II
Rfer_3466	SSF54427	NTF2-like
Rfer_3467	SSF46689	Homeodomain-like
Rfer_3467	SSF52317	Class I glutamine amidotransferase-like
Rfer_3468	SSF103247	TT1751-like
Rfer_3469	SSF51430	NAD(P)-linked oxidoreductase
Rfer_3471	SSF55073	Nucleotide cyclase
Rfer_3473	SSF159894	YgaC/TfoX-N like
Rfer_3475	SSF54631	CBS-domain pair
Rfer_3475	SSF55073	Nucleotide cyclase
Rfer_3475	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3477	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Rfer_3477	SSF88723	PIN domain-like
Rfer_3479	SSF46785	"Winged helix" DNA-binding domain
Rfer_3479	SSF53850	Periplasmic binding protein-like II
Rfer_3484	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3485	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_3486	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_3487	SSF48557	L-aspartase-like
Rfer_3488	SSF51905	FAD/NAD(P)-binding domain
Rfer_3488	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rfer_3489	SSF103501	Respiratory nitrate reductase 1 gamma chain
Rfer_3489	SSF54862	4Fe-4S ferredoxins
Rfer_3490	SSF54506	Diaminopimelate epimerase-like
Rfer_3491	SSF46785	"Winged helix" DNA-binding domain
Rfer_3491	SSF53850	Periplasmic binding protein-like II
Rfer_3492	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3493	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3493	SSF90123	ABC transporter transmembrane region
Rfer_3494	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3495	SSF52218	Flavoproteins
Rfer_3498	SSF52096	ClpP/crotonase
Rfer_3501	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3502	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3503	SSF56801	Acetyl-CoA synthetase-like
Rfer_3504	SSF53822	Periplasmic binding protein-like I
Rfer_3505	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3506	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3506	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3507	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3508	SSF46689	Homeodomain-like
Rfer_3508	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3509	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_3509	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3510	SSF51905	FAD/NAD(P)-binding domain
Rfer_3511	SSF46785	"Winged helix" DNA-binding domain
Rfer_3511	SSF51206	cAMP-binding domain-like
Rfer_3512	SSF52096	ClpP/crotonase
Rfer_3513	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3514	SSF50985	RCC1/BLIP-II
Rfer_3515	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3516	SSF53901	Thiolase-like
Rfer_3517	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_3517	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3517	SSF52096	ClpP/crotonase
Rfer_3519	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3519	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3520	SSF46689	Homeodomain-like
Rfer_3520	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3521	SSF46689	Homeodomain-like
Rfer_3521	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3522	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3522	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3523	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3523	SSF52172	CheY-like
Rfer_3524	SSF53633	Carbamate kinase-like
Rfer_3525	SSF81273	H-NS histone-like proteins
Rfer_3526	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3528	SSF52151	FabD/lysophospholipase-like
Rfer_3529	SSF46689	Homeodomain-like
Rfer_3531	SSF52777	CoA-dependent acyltransferases
Rfer_3532	SSF47027	Acyl-CoA binding protein
Rfer_3536	SSF56801	Acetyl-CoA synthetase-like
Rfer_3537	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3538	SSF53822	Periplasmic binding protein-like I
Rfer_3541	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3542	SSF56801	Acetyl-CoA synthetase-like
Rfer_3543	SSF46785	"Winged helix" DNA-binding domain
Rfer_3543	SSF51206	cAMP-binding domain-like
Rfer_3544	SSF55120	Pseudouridine synthase
Rfer_3544	SSF55174	Alpha-L RNA-binding motif
Rfer_3545	SSF53474	alpha/beta-Hydrolases
Rfer_3546	SSF52172	CheY-like
Rfer_3546	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3547	SSF52172	CheY-like
Rfer_3547	SSF55073	Nucleotide cyclase
Rfer_3548	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3548	SSF52172	CheY-like
Rfer_3548	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3548	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3549	SSF46785	"Winged helix" DNA-binding domain
Rfer_3549	SSF51206	cAMP-binding domain-like
Rfer_3551	SSF110942	HSP90 C-terminal domain
Rfer_3551	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3551	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3552	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rfer_3552	SSF51230	Single hybrid motif
Rfer_3552	SSF52777	CoA-dependent acyltransferases
Rfer_3553	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3553	SSF52922	TK C-terminal domain-like
Rfer_3554	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3555	SSF47616	GST C-terminal domain-like
Rfer_3555	SSF52833	Thioredoxin-like
Rfer_3558	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3559	SSF51246	Rudiment single hybrid motif
Rfer_3559	SSF52440	PreATP-grasp domain
Rfer_3559	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3562	SSF52964	TolB, N-terminal domain
Rfer_3564	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_3564	SSF46785	"Winged helix" DNA-binding domain
Rfer_3565	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rfer_3566	SSF142764	YgbK-like
Rfer_3568	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3569	SSF53167	Purine and uridine phosphorylases
Rfer_3570	SSF56601	beta-lactamase/transpeptidase-like
Rfer_3571	SSF55931	Glutamine synthetase/guanido kinase
Rfer_3572	SSF141868	EAL domain-like
Rfer_3572	SSF55073	Nucleotide cyclase
Rfer_3572	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3573	SSF52172	CheY-like
Rfer_3573	SSF52833	Thioredoxin-like
Rfer_3574	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3574	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3575	SSF53187	Zn-dependent exopeptidases
Rfer_3577	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3579	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3580	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_3581	SSF51645	Malate synthase G
Rfer_3582	SSF56784	HAD-like
Rfer_3584	SSF46785	"Winged helix" DNA-binding domain
Rfer_3584	SSF48008	GntR ligand-binding domain-like
Rfer_3585	SSF53720	ALDH-like
Rfer_3586	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3587	SSF46689	Homeodomain-like
Rfer_3587	SSF52172	CheY-like
Rfer_3588	SSF158472	HAMP domain-like
Rfer_3588	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3588	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3588	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3590	SSF48013	NusB-like
Rfer_3590	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3591	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rfer_3592	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rfer_3593	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Rfer_3593	SSF54736	ClpS-like
Rfer_3594	SSF160369	Ribosomal protein L10-like
Rfer_3595	SSF56808	Ribosomal protein L1
Rfer_3596	SSF46906	Ribosomal protein L11, C-terminal domain
Rfer_3596	SSF54747	Ribosomal L11/L12e N-terminal domain
Rfer_3597	SSF50104	Translation proteins SH3-like domain
Rfer_3597	SSF82679	N-utilization substance G protein NusG, N-terminal domain
Rfer_3599	SSF50447	Translation proteins
Rfer_3599	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rfer_3599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3600	SSF52141	Uracil-DNA glycosylase-like
Rfer_3601	SSF51366	Ribulose-phoshate binding barrel
Rfer_3602	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rfer_3602	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rfer_3604	SSF53383	PLP-dependent transferases
Rfer_3605	SSF52317	Class I glutamine amidotransferase-like
Rfer_3606	SSF55073	Nucleotide cyclase
Rfer_3606	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3607	SSF56322	ADC synthase
Rfer_3608	SSF54626	Chalcone isomerase
Rfer_3609	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3610	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3611	SSF56784	HAD-like
Rfer_3612	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rfer_3612	SSF52242	Cobalamin (vitamin B12)-binding domain
Rfer_3612	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3613	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_3614	SSF53067	Actin-like ATPase domain
Rfer_3615	SSF53187	Zn-dependent exopeptidases
Rfer_3615	SSF55031	Bacterial exopeptidase dimerisation domain
Rfer_3616	SSF56219	DNase I-like
Rfer_3617	SSF56024	Phospholipase D/nuclease
Rfer_3619	SSF50692	ADC-like
Rfer_3619	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3620	SSF46785	"Winged helix" DNA-binding domain
Rfer_3620	SSF53850	Periplasmic binding protein-like II
Rfer_3621	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3622	SSF46689	Homeodomain-like
Rfer_3622	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3623	SSF111369	HlyD-like secretion proteins
Rfer_3625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3626	SSF47188	Hemerythrin-like
Rfer_3626	SSF55073	Nucleotide cyclase
Rfer_3626	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3627	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3628	SSF69118	AhpD-like
Rfer_3631	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_3634	SSF81342	Transmembrane di-heme cytochromes
Rfer_3635	SSF48695	Multiheme cytochromes
Rfer_3636	SSF46785	"Winged helix" DNA-binding domain
Rfer_3637	SSF55469	FMN-dependent nitroreductase-like
Rfer_3638	SSF109604	HD-domain/PDEase-like
Rfer_3639	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_3639	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_3640	SSF53098	Ribonuclease H-like
Rfer_3642	SSF52833	Thioredoxin-like
Rfer_3644	SSF160240	Cation efflux protein cytoplasmic domain-like
Rfer_3644	SSF161111	Cation efflux protein transmembrane domain-like
Rfer_3645	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3645	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3646	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3646	SSF52172	CheY-like
Rfer_3648	SSF46785	"Winged helix" DNA-binding domain
Rfer_3648	SSF54909	Dimeric alpha+beta barrel
Rfer_3649	SSF53383	PLP-dependent transferases
Rfer_3650	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3650	SSF52922	TK C-terminal domain-like
Rfer_3651	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3652	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_3652	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rfer_3653	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3654	SSF55073	Nucleotide cyclase
Rfer_3654	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3655	SSF52151	FabD/lysophospholipase-like
Rfer_3659	SSF103473	MFS general substrate transporter
Rfer_3661	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_3662	SSF49899	Concanavalin A-like lectins/glucanases
Rfer_3664	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3666	SSF52788	Phosphotyrosine protein phosphatases I
Rfer_3667	SSF46785	"Winged helix" DNA-binding domain
Rfer_3670	SSF51905	FAD/NAD(P)-binding domain
Rfer_3671	SSF53850	Periplasmic binding protein-like II
Rfer_3673	SSF161098	MetI-like
Rfer_3674	SSF161098	MetI-like
Rfer_3675	SSF50331	MOP-like
Rfer_3675	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3676	SSF50331	MOP-like
Rfer_3676	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3677	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_3677	SSF46785	"Winged helix" DNA-binding domain
Rfer_3678	SSF53067	Actin-like ATPase domain
Rfer_3679	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_3679	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3681	SSF46785	"Winged helix" DNA-binding domain
Rfer_3681	SSF53850	Periplasmic binding protein-like II
Rfer_3683	SSF56300	Metallo-dependent phosphatases
Rfer_3684	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3685	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3685	SSF52172	CheY-like
Rfer_3688	SSF50249	Nucleic acid-binding proteins
Rfer_3688	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3689	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3689	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3690	SSF53748	Phosphoglycerate kinase
Rfer_3691	SSF53383	PLP-dependent transferases
Rfer_3693	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_3694	SSF56784	HAD-like
Rfer_3695	SSF109604	HD-domain/PDEase-like
Rfer_3696	SSF55681	Class II aaRS and biotin synthetases
Rfer_3697	SSF56317	Carbon-nitrogen hydrolase
Rfer_3698	SSF54631	CBS-domain pair
Rfer_3698	SSF56176	FAD-binding/transporter-associated domain-like
Rfer_3699	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3700	SSF63592	Flagellar transcriptional activator FlhD
Rfer_3701	SSF160930	FlhC-like
Rfer_3703	SSF103088	OmpA-like
Rfer_3704	SSF52172	CheY-like
Rfer_3705	SSF75708	Chemotaxis phosphatase CheZ
Rfer_3706	SSF160544	EscU C-terminal domain-like
Rfer_3708	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3710	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_3710	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_3712	SSF101498	Anti-sigma factor FlgM
Rfer_3717	SSF117143	Flagellar hook protein flgE
Rfer_3718	SSF117143	Flagellar hook protein flgE
Rfer_3719	SSF117143	Flagellar hook protein flgE
Rfer_3723	SSF64518	Phase 1 flagellin
Rfer_3724	SSF64518	Phase 1 flagellin
Rfer_3725	SSF46785	"Winged helix" DNA-binding domain
Rfer_3725	SSF53383	PLP-dependent transferases
Rfer_3727	SSF53681	Aspartate/glutamate racemase
Rfer_3728	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3729	SSF53383	PLP-dependent transferases
Rfer_3730	SSF47616	GST C-terminal domain-like
Rfer_3730	SSF52833	Thioredoxin-like
Rfer_3731	SSF54506	Diaminopimelate epimerase-like
Rfer_3732	SSF53254	Phosphoglycerate mutase-like
Rfer_3733	SSF50475	FMN-binding split barrel
Rfer_3737	SSF56784	HAD-like
Rfer_3738	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_3738	SSF46785	"Winged helix" DNA-binding domain
Rfer_3739	SSF47413	lambda repressor-like DNA-binding domains
Rfer_3739	SSF55234	Cyanase C-terminal domain
Rfer_3740	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3741	SSF161098	MetI-like
Rfer_3742	SSF53850	Periplasmic binding protein-like II
Rfer_3743	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3743	SSF52172	CheY-like
Rfer_3744	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3744	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3745	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_3746	SSF102215	Creatininase
Rfer_3747	SSF57783	Zinc beta-ribbon
Rfer_3747	SSF82057	Prokaryotic SH3-related domain
Rfer_3748	SSF143865	CorA soluble domain-like
Rfer_3748	SSF144083	Magnesium transport protein CorA, transmembrane region
Rfer_3749	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_3750	SSF53639	AraD/HMP-PK domain-like
Rfer_3751	SSF53167	Purine and uridine phosphorylases
Rfer_3752	SSF56801	Acetyl-CoA synthetase-like
Rfer_3753	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_3754	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3754	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_3755	SSF55811	Nudix
Rfer_3756	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_3759	SSF51905	FAD/NAD(P)-binding domain
Rfer_3760	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_3760	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_3760	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_3761	SSF111369	HlyD-like secretion proteins
Rfer_3762	SSF103088	OmpA-like
Rfer_3762	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_3764	SSF141868	EAL domain-like
Rfer_3764	SSF55073	Nucleotide cyclase
Rfer_3765	SSF53955	Lysozyme-like
Rfer_3765	SSF81901	HCP-like
Rfer_3766	SSF51120	beta-Roll
Rfer_3768	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_3770	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3770	SSF90123	ABC transporter transmembrane region
Rfer_3772	SSF50249	Nucleic acid-binding proteins
Rfer_3773	SSF103473	MFS general substrate transporter
Rfer_3774	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3775	SSF56801	Acetyl-CoA synthetase-like
Rfer_3776	SSF51366	Ribulose-phoshate binding barrel
Rfer_3777	SSF53098	Ribonuclease H-like
Rfer_3778	SSF52172	CheY-like
Rfer_3779	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3779	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3783	SSF51206	cAMP-binding domain-like
Rfer_3783	SSF54631	CBS-domain pair
Rfer_3784	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rfer_3785	SSF52833	Thioredoxin-like
Rfer_3786	SSF50249	Nucleic acid-binding proteins
Rfer_3787	SSF46561	Ribosomal protein L29 (L29p)
Rfer_3788	SSF54686	Ribosomal protein L16p/L10e
Rfer_3789	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rfer_3789	SSF54821	Ribosomal protein S3 C-terminal domain
Rfer_3790	SSF54843	Ribosomal protein L22
Rfer_3791	SSF54570	Ribosomal protein S19
Rfer_3792	SSF50104	Translation proteins SH3-like domain
Rfer_3792	SSF50249	Nucleic acid-binding proteins
Rfer_3793	SSF54189	Ribosomal proteins S24e, L23 and L15e
Rfer_3794	SSF52166	Ribosomal protein L4
Rfer_3795	SSF50447	Translation proteins
Rfer_3796	SSF54999	Ribosomal protein S10
Rfer_3797	SSF50447	Translation proteins
Rfer_3797	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rfer_3797	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3798	SSF50447	Translation proteins
Rfer_3798	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3798	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_3798	SSF54980	EF-G C-terminal domain-like
Rfer_3799	SSF47973	Ribosomal protein S7
Rfer_3800	SSF50249	Nucleic acid-binding proteins
Rfer_3801	SSF56601	beta-lactamase/transpeptidase-like
Rfer_3801	SSF69189	Penicillin-binding protein associated domain
Rfer_3802	SSF52833	Thioredoxin-like
Rfer_3805	SSF51569	Aldolase
Rfer_3806	SSF143865	CorA soluble domain-like
Rfer_3806	SSF144083	Magnesium transport protein CorA, transmembrane region
Rfer_3807	SSF53850	Periplasmic binding protein-like II
Rfer_3808	SSF161098	MetI-like
Rfer_3809	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3810	SSF53474	alpha/beta-Hydrolases
Rfer_3811	SSF52833	Thioredoxin-like
Rfer_3812	SSF48657	FinO-like
Rfer_3814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3815	SSF53822	Periplasmic binding protein-like I
Rfer_3816	SSF52833	Thioredoxin-like
Rfer_3817	SSF46626	Cytochrome c
Rfer_3819	SSF111384	OmpH-like
Rfer_3820	SSF52172	CheY-like
Rfer_3821	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3821	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3822	SSF50156	PDZ domain-like
Rfer_3822	SSF50494	Trypsin-like serine proteases
Rfer_3823	SSF55826	YbaK/ProRS associated domain
Rfer_3824	SSF51569	Aldolase
Rfer_3826	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3826	SSF90123	ABC transporter transmembrane region
Rfer_3828	SSF102114	Radical SAM enzymes
Rfer_3829	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3830	SSF51230	Single hybrid motif
Rfer_3830	SSF51246	Rudiment single hybrid motif
Rfer_3830	SSF52440	PreATP-grasp domain
Rfer_3830	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3831	SSF52096	ClpP/crotonase
Rfer_3832	SSF52096	ClpP/crotonase
Rfer_3833	SSF56801	Acetyl-CoA synthetase-like
Rfer_3834	SSF46689	Homeodomain-like
Rfer_3836	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_3838	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3838	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3839	SSF53901	Thiolase-like
Rfer_3841	SSF53056	beta-carbonic anhydrase, cab
Rfer_3842	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_3842	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_3843	SSF46955	Putative DNA-binding domain
Rfer_3844	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_3846	SSF48557	L-aspartase-like
Rfer_3848	SSF50692	ADC-like
Rfer_3848	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rfer_3849	SSF50249	Nucleic acid-binding proteins
Rfer_3849	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rfer_3850	SSF54631	CBS-domain pair
Rfer_3851	SSF56300	Metallo-dependent phosphatases
Rfer_3852	SSF103365	Hypothetical protein PH1602
Rfer_3853	SSF69819	MTH1598-like
Rfer_3854	SSF53163	HybD-like
Rfer_3855	SSF56762	HydB/Nqo4-like
Rfer_3856	SSF56770	HydA/Nqo6-like
Rfer_3857	SSF54292	2Fe-2S ferredoxin-like
Rfer_3858	SSF140490	Nqo1C-terminal domain-like
Rfer_3858	SSF142019	Nqo1 FMN-binding domain-like
Rfer_3858	SSF142984	Nqo1 middle domain-like
Rfer_3858	SSF52833	Thioredoxin-like
Rfer_3859	SSF50486	FMT C-terminal domain-like
Rfer_3859	SSF53328	Formyltransferase
Rfer_3860	SSF56420	Peptide deformylase
Rfer_3861	SSF54106	LysM domain
Rfer_3862	SSF102405	MCP/YpsA-like
Rfer_3865	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_3866	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_3868	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3868	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rfer_3870	SSF54909	Dimeric alpha+beta barrel
Rfer_3871	SSF46955	Putative DNA-binding domain
Rfer_3872	SSF53790	Tetrapyrrole methylase
Rfer_3873	SSF52980	Restriction endonuclease-like
Rfer_3874	SSF53697	SIS domain
Rfer_3876	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_3876	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3877	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3879	SSF51419	PLP-binding barrel
Rfer_3880	SSF55973	S-adenosylmethionine synthetase
Rfer_3882	SSF46785	"Winged helix" DNA-binding domain
Rfer_3882	SSF54909	Dimeric alpha+beta barrel
Rfer_3883	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3884	SSF52768	Arginase/deacetylase
Rfer_3886	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3887	SSF117778	D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Rfer_3887	SSF52242	Cobalamin (vitamin B12)-binding domain
Rfer_3888	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rfer_3890	SSF50129	GroES-like
Rfer_3890	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3891	SSF102114	Radical SAM enzymes
Rfer_3892	SSF46785	"Winged helix" DNA-binding domain
Rfer_3892	SSF54909	Dimeric alpha+beta barrel
Rfer_3893	SSF141868	EAL domain-like
Rfer_3893	SSF53850	Periplasmic binding protein-like II
Rfer_3893	SSF55073	Nucleotide cyclase
Rfer_3893	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3895	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rfer_3897	SSF46689	Homeodomain-like
Rfer_3897	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_3898	SSF56801	Acetyl-CoA synthetase-like
Rfer_3899	SSF51230	Single hybrid motif
Rfer_3899	SSF52096	ClpP/crotonase
Rfer_3901	SSF109604	HD-domain/PDEase-like
Rfer_3901	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3908	SSF143430	TTP0101/SSO1404-like
Rfer_3913	SSF52821	Rhodanese/Cell cycle control phosphatase
Rfer_3914	SSF159594	XCC0632-like
Rfer_3916	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3918	SSF51905	FAD/NAD(P)-binding domain
Rfer_3918	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_3920	SSF56519	Penicillin binding protein dimerisation domain
Rfer_3920	SSF56601	beta-lactamase/transpeptidase-like
Rfer_3923	SSF53067	Actin-like ATPase domain
Rfer_3924	SSF141000	Glu-tRNAGln amidotransferase C subunit
Rfer_3925	SSF75304	Amidase signature (AS) enzymes
Rfer_3926	SSF55931	Glutamine synthetase/guanido kinase
Rfer_3926	SSF89095	GatB/YqeY motif
Rfer_3928	SSF53271	PRTase-like
Rfer_3929	SSF56219	DNase I-like
Rfer_3931	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3932	SSF141868	EAL domain-like
Rfer_3932	SSF55073	Nucleotide cyclase
Rfer_3932	SSF55781	GAF domain-like
Rfer_3932	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_3934	SSF102114	Radical SAM enzymes
Rfer_3935	SSF55681	Class II aaRS and biotin synthetases
Rfer_3936	SSF117991	YbeD/HP0495-like
Rfer_3937	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rfer_3938	SSF160246	EspE N-terminal domain-like
Rfer_3938	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3938	SSF55781	GAF domain-like
Rfer_3939	SSF56281	Metallo-hydrolase/oxidoreductase
Rfer_3940	SSF49879	SMAD/FHA domain
Rfer_3941	SSF81606	PP2C-like
Rfer_3942	SSF56112	Protein kinase-like (PK-like)
Rfer_3944	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3944	SSF52210	Succinyl-CoA synthetase domains
Rfer_3945	SSF52210	Succinyl-CoA synthetase domains
Rfer_3945	SSF56059	Glutathione synthetase ATP-binding domain-like
Rfer_3946	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3946	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_3948	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3948	SSF54752	RecA protein, C-terminal domain
Rfer_3949	SSF46785	"Winged helix" DNA-binding domain
Rfer_3950	SSF52172	CheY-like
Rfer_3951	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_3951	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_3953	SSF55681	Class II aaRS and biotin synthetases
Rfer_3954	SSF82199	SET domain
Rfer_3955	SSF47592	SWIB/MDM2 domain
Rfer_3955	SSF56712	Prokaryotic type I DNA topoisomerase
Rfer_3962	SSF49777	PEBP-like
Rfer_3963	SSF56801	Acetyl-CoA synthetase-like
Rfer_3964	SSF54427	NTF2-like
Rfer_3965	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3966	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_3966	SSF52922	TK C-terminal domain-like
Rfer_3967	SSF51230	Single hybrid motif
Rfer_3968	SSF55681	Class II aaRS and biotin synthetases
Rfer_3971	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_3974	SSF53901	Thiolase-like
Rfer_3975	SSF52218	Flavoproteins
Rfer_3977	SSF53901	Thiolase-like
Rfer_3978	SSF47336	ACP-like
Rfer_3980	SSF47336	ACP-like
Rfer_3982	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Rfer_3983	SSF88713	Glycoside hydrolase/deacetylase
Rfer_3984	SSF53901	Thiolase-like
Rfer_3985	SSF53901	Thiolase-like
Rfer_3986	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3987	SSF56801	Acetyl-CoA synthetase-like
Rfer_3988	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_3990	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_3991	SSF53474	alpha/beta-Hydrolases
Rfer_3993	SSF53901	Thiolase-like
Rfer_3994	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_3995	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_3996	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_3997	SSF53448	Nucleotide-diphospho-sugar transferases
Rfer_3998	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rfer_3999	SSF53901	Thiolase-like
Rfer_4000	SSF47336	ACP-like
Rfer_4001	SSF53901	Thiolase-like
Rfer_4002	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_4005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4006	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_4007	SSF116734	DNA methylase specificity domain
Rfer_4010	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4011	SSF46785	"Winged helix" DNA-binding domain
Rfer_4011	SSF53850	Periplasmic binding protein-like II
Rfer_4012	SSF55469	FMN-dependent nitroreductase-like
Rfer_4015	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_4016	SSF51197	Clavaminate synthase-like
Rfer_4017	SSF47616	GST C-terminal domain-like
Rfer_4017	SSF52833	Thioredoxin-like
Rfer_4018	SSF103481	Multidrug resistance efflux transporter EmrE
Rfer_4019	SSF52335	Methylglyoxal synthase-like
Rfer_4022	SSF51430	NAD(P)-linked oxidoreductase
Rfer_4023	SSF46955	Putative DNA-binding domain
Rfer_4024	SSF54909	Dimeric alpha+beta barrel
Rfer_4025	SSF54909	Dimeric alpha+beta barrel
Rfer_4026	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_4027	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_4027	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_4028	SSF158472	HAMP domain-like
Rfer_4028	SSF55073	Nucleotide cyclase
Rfer_4029	SSF48371	ARM repeat
Rfer_4030	SSF47188	Hemerythrin-like
Rfer_4030	SSF55073	Nucleotide cyclase
Rfer_4033	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rfer_4033	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4034	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4034	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_4035	SSF48208	Six-hairpin glycosidases
Rfer_4037	SSF140931	Fic-like
Rfer_4038	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rfer_4040	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
Rfer_4046	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4047	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4048	SSF52980	Restriction endonuclease-like
Rfer_4049	SSF48557	L-aspartase-like
Rfer_4050	SSF47616	GST C-terminal domain-like
Rfer_4050	SSF52833	Thioredoxin-like
Rfer_4051	SSF109604	HD-domain/PDEase-like
Rfer_4052	SSF52374	Nucleotidylyl transferase
Rfer_4053	SSF51905	FAD/NAD(P)-binding domain
Rfer_4054	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4054	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rfer_4055	SSF141868	EAL domain-like
Rfer_4055	SSF55073	Nucleotide cyclase
Rfer_4055	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_4056	SSF56112	Protein kinase-like (PK-like)
Rfer_4057	SSF50475	FMN-binding split barrel
Rfer_4058	SSF53955	Lysozyme-like
Rfer_4058	SSF56601	beta-lactamase/transpeptidase-like
Rfer_4060	SSF56300	Metallo-dependent phosphatases
Rfer_4061	SSF46689	Homeodomain-like
Rfer_4061	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_4062	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4065	SSF53822	Periplasmic binding protein-like I
Rfer_4066	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4067	SSF56801	Acetyl-CoA synthetase-like
Rfer_4068	SSF52096	ClpP/crotonase
Rfer_4069	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_4070	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_4070	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_4071	SSF46785	"Winged helix" DNA-binding domain
Rfer_4071	SSF53850	Periplasmic binding protein-like II
Rfer_4072	SSF52218	Flavoproteins
Rfer_4073	SSF48695	Multiheme cytochromes
Rfer_4075	SSF48695	Multiheme cytochromes
Rfer_4076	SSF48695	Multiheme cytochromes
Rfer_4077	SSF46626	Cytochrome c
Rfer_4078	SSF81585	PsbU/PolX domain-like
Rfer_4079	SSF48695	Multiheme cytochromes
Rfer_4080	SSF48695	Multiheme cytochromes
Rfer_4081	SSF56935	Porins
Rfer_4082	SSF48695	Multiheme cytochromes
Rfer_4083	SSF48695	Multiheme cytochromes
Rfer_4084	SSF46626	Cytochrome c
Rfer_4085	SSF46626	Cytochrome c
Rfer_4086	SSF109604	HD-domain/PDEase-like
Rfer_4088	SSF56770	HydA/Nqo6-like
Rfer_4089	SSF54862	4Fe-4S ferredoxins
Rfer_4091	SSF56762	HydB/Nqo4-like
Rfer_4092	SSF53163	HybD-like
Rfer_4093	SSF159127	HupF/HypC-like
Rfer_4096	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4097	SSF54975	Acylphosphatase/BLUF domain-like
Rfer_4097	SSF55821	YrdC/RibB
Rfer_4098	SSF159127	HupF/HypC-like
Rfer_4100	SSF55326	PurM N-terminal domain-like
Rfer_4100	SSF56042	PurM C-terminal domain-like
Rfer_4101	SSF50486	FMT C-terminal domain-like
Rfer_4101	SSF52096	ClpP/crotonase
Rfer_4101	SSF53328	Formyltransferase
Rfer_4102	SSF46689	Homeodomain-like
Rfer_4102	SSF52172	CheY-like
Rfer_4102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4103	SSF46689	Homeodomain-like
Rfer_4103	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rfer_4104	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rfer_4104	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rfer_4104	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rfer_4105	SSF111369	HlyD-like secretion proteins
Rfer_4106	SSF56954	Outer membrane efflux proteins (OEP)
Rfer_4107	SSF55136	Probable bacterial effector-binding domain
Rfer_4108	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_4109	SSF51316	Mss4-like
Rfer_4110	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rfer_4111	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4111	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rfer_4112	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rfer_4112	SSF52922	TK C-terminal domain-like
Rfer_4113	SSF51395	FMN-linked oxidoreductases
Rfer_4114	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_4115	SSF46785	"Winged helix" DNA-binding domain
Rfer_4117	SSF102114	Radical SAM enzymes
Rfer_4118	SSF56762	HydB/Nqo4-like
Rfer_4119	SSF54862	4Fe-4S ferredoxins
Rfer_4120	SSF56770	HydA/Nqo6-like
Rfer_4121	SSF56762	HydB/Nqo4-like
Rfer_4122	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rfer_4122	SSF55785	PYP-like sensor domain (PAS domain)
Rfer_4122	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rfer_4124	SSF52833	Thioredoxin-like
Rfer_4125	SSF46626	Cytochrome c
Rfer_4126	SSF46626	Cytochrome c
Rfer_4127	SSF81442	Cytochrome c oxidase subunit I-like
Rfer_4128	SSF46458	Globin-like
Rfer_4129	SSF52141	Uracil-DNA glycosylase-like
Rfer_4131	SSF69118	AhpD-like
Rfer_4133	SSF46785	"Winged helix" DNA-binding domain
Rfer_4134	SSF46626	Cytochrome c
Rfer_4136	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_4136	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_4137	SSF47240	Ferritin-like
Rfer_4138	SSF46626	Cytochrome c
Rfer_4139	SSF53383	PLP-dependent transferases
Rfer_4141	SSF48264	Cytochrome P450
Rfer_4142	SSF56300	Metallo-dependent phosphatases
Rfer_4143	SSF54862	4Fe-4S ferredoxins
Rfer_4146	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rfer_4146	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rfer_4154	SSF51338	Composite domain of metallo-dependent hydrolases
Rfer_4154	SSF51556	Metallo-dependent hydrolases
Rfer_4155	SSF53187	Zn-dependent exopeptidases
Rfer_4156	SSF51182	RmlC-like cupins
Rfer_4157	SSF46785	"Winged helix" DNA-binding domain
Rfer_4157	SSF64288	Chorismate lyase-like
Rfer_4158	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4159	SSF161098	MetI-like
Rfer_4160	SSF53850	Periplasmic binding protein-like II
Rfer_4161	SSF46785	"Winged helix" DNA-binding domain
Rfer_4161	SSF55781	GAF domain-like
Rfer_4163	SSF51905	FAD/NAD(P)-binding domain
Rfer_4163	SSF54373	FAD-linked reductases, C-terminal domain
Rfer_4163	SSF54862	4Fe-4S ferredoxins
Rfer_4164	SSF50692	ADC-like
Rfer_4165	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_4165	SSF52467	DHS-like NAD/FAD-binding domain
Rfer_4166	SSF52402	Adenine nucleotide alpha hydrolases-like
Rfer_4167	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_4168	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_4169	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_4169	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_4170	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_4171	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_4176	SSF103473	MFS general substrate transporter
Rfer_4178	SSF100950	NagB/RpiA/CoA transferase-like
Rfer_4179	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rfer_4180	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rfer_4181	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_4181	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_4185	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rfer_4186	SSF46785	"Winged helix" DNA-binding domain
Rfer_4186	SSF64288	Chorismate lyase-like
Rfer_4187	SSF46785	"Winged helix" DNA-binding domain
Rfer_4188	SSF64288	Chorismate lyase-like
Rfer_4189	SSF103378	2-methylcitrate dehydratase PrpD
Rfer_4190	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_4191	SSF103473	MFS general substrate transporter
Rfer_4192	SSF55821	YrdC/RibB
Rfer_4193	SSF52499	Isochorismatase-like hydrolases
Rfer_4197	SSF55821	YrdC/RibB
Rfer_4198	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rfer_4199	SSF51569	Aldolase
Rfer_4202	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4203	SSF53098	Ribonuclease H-like
Rfer_4204	SSF56801	Acetyl-CoA synthetase-like
Rfer_4205	SSF53901	Thiolase-like
Rfer_4206	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4207	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rfer_4207	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rfer_4208	SSF46894	C-terminal effector domain of the bipartite response regulators
Rfer_4208	SSF48452	TPR-like
Rfer_4208	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4211	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4216	SSF64263	Prokaryotic ribosomal protein L17
Rfer_4217	SSF47789	C-terminal domain of RNA polymerase alpha subunit
Rfer_4217	SSF55257	RBP11-like subunits of RNA polymerase
Rfer_4217	SSF56553	Insert subdomain of RNA polymerase alpha subunit
Rfer_4218	SSF55174	Alpha-L RNA-binding motif
Rfer_4219	SSF53137	Translational machinery components
Rfer_4220	SSF46946	S13-like H2TH domain
Rfer_4221	SSF57840	Ribosomal protein L36
Rfer_4222	SSF50249	Nucleic acid-binding proteins
Rfer_4223	SSF103491	Preprotein translocase SecY subunit
Rfer_4224	SSF52080	Ribosomal proteins L15p and L18e
Rfer_4225	SSF55129	Ribosomal protein L30p/L7e
Rfer_4226	SSF54211	Ribosomal protein S5 domain 2-like
Rfer_4226	SSF54768	dsRNA-binding domain-like
Rfer_4227	SSF53137	Translational machinery components
Rfer_4228	SSF56053	Ribosomal protein L6
Rfer_4229	SSF56047	Ribosomal protein S8
Rfer_4230	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rfer_4231	SSF55282	RL5-like
Rfer_4232	SSF50104	Translation proteins SH3-like domain
Rfer_4233	SSF50193	Ribosomal protein L14
Rfer_4234	SSF54928	RNA-binding domain, RBD
Rfer_4236	SSF56784	HAD-like
Rfer_4237	SSF53697	SIS domain
Rfer_4238	SSF116726	TrkA C-terminal domain-like
Rfer_4238	SSF51735	NAD(P)-binding Rossmann-fold domains
Rfer_4239	SSF53271	PRTase-like
Rfer_4241	SSF116878	TrmE connector domain
Rfer_4241	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rfer_4244	SSF54211	Ribosomal protein S5 domain 2-like