Rpdx1_0019	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0019	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_0019	PWY-6692	Fe(II) oxidation
Rpdx1_0019	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_0020	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0020	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_0020	PWY-6692	Fe(II) oxidation
Rpdx1_0020	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_0025	PWY-4041	γ-glutamyl cycle
Rpdx1_0025	PWY-5826	hypoglycin biosynthesis
Rpdx1_0027	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Rpdx1_0027	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Rpdx1_0027	PWY-6164	3-dehydroquinate biosynthesis I
Rpdx1_0029	PWY-6123	inosine-5'-phosphate biosynthesis I
Rpdx1_0029	PWY-6124	inosine-5'-phosphate biosynthesis II
Rpdx1_0029	PWY-7234	inosine-5'-phosphate biosynthesis III
Rpdx1_0063	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_0065	PWY-7205	CMP phosphorylation
Rpdx1_0073	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_0073	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_0073	PWY-5744	glyoxylate assimilation
Rpdx1_0073	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_0073	PWY-6679	jadomycin biosynthesis
Rpdx1_0073	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_0074	PWY-2161	folate polyglutamylation
Rpdx1_0082	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Rpdx1_0082	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_0082	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_0082	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Rpdx1_0085	PWY-5839	menaquinol-7 biosynthesis
Rpdx1_0085	PWY-5844	menaquinol-9 biosynthesis
Rpdx1_0085	PWY-5849	menaquinol-6 biosynthesis
Rpdx1_0085	PWY-5890	menaquinol-10 biosynthesis
Rpdx1_0085	PWY-5891	menaquinol-11 biosynthesis
Rpdx1_0085	PWY-5892	menaquinol-12 biosynthesis
Rpdx1_0085	PWY-5895	menaquinol-13 biosynthesis
Rpdx1_0152	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_0189	PWY-6854	ethylene biosynthesis III (microbes)
Rpdx1_0211	PWY-3162	L-tryptophan degradation V (side chain pathway)
Rpdx1_0211	PWY-5057	L-valine degradation II
Rpdx1_0211	PWY-5076	L-leucine degradation III
Rpdx1_0211	PWY-5078	L-isoleucine degradation II
Rpdx1_0211	PWY-5079	L-phenylalanine degradation III
Rpdx1_0211	PWY-5082	L-methionine degradation III
Rpdx1_0211	PWY-5480	pyruvate fermentation to ethanol I
Rpdx1_0211	PWY-5486	pyruvate fermentation to ethanol II
Rpdx1_0211	PWY-5751	phenylethanol biosynthesis
Rpdx1_0211	PWY-6028	acetoin degradation
Rpdx1_0211	PWY-6313	serotonin degradation
Rpdx1_0211	PWY-6333	acetaldehyde biosynthesis I
Rpdx1_0211	PWY-6342	noradrenaline and adrenaline degradation
Rpdx1_0211	PWY-6587	pyruvate fermentation to ethanol III
Rpdx1_0211	PWY-6802	salidroside biosynthesis
Rpdx1_0211	PWY-6871	3-methylbutanol biosynthesis
Rpdx1_0211	PWY-7013	L-1,2-propanediol degradation
Rpdx1_0211	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_0211	PWY-7118	chitin degradation to ethanol
Rpdx1_0211	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Rpdx1_0211	PWY-7557	dehydrodiconiferyl alcohol degradation
Rpdx1_0218	PWY-622	starch biosynthesis
Rpdx1_0219	PWY-622	starch biosynthesis
Rpdx1_0228	PWY-5491	diethylphosphate degradation
Rpdx1_0231	PWY-4983	L-citrulline-nitric oxide cycle
Rpdx1_0231	PWY-4984	urea cycle
Rpdx1_0231	PWY-5	canavanine biosynthesis
Rpdx1_0231	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_0231	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_0242	PWY-7158	L-phenylalanine degradation V
Rpdx1_0251	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Rpdx1_0251	PWY-2201	folate transformations I
Rpdx1_0251	PWY-3841	folate transformations II
Rpdx1_0251	PWY-5030	L-histidine degradation III
Rpdx1_0251	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_0251	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Rpdx1_0262	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_0262	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_0262	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_0262	PWY-5994	palmitate biosynthesis I (animals and fungi)
Rpdx1_0262	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_0262	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_0262	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_0262	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_0262	PWYG-321	mycolate biosynthesis
Rpdx1_0264	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_0264	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_0264	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_0264	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_0264	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_0264	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_0264	PWY-7096	triclosan resistance
Rpdx1_0264	PWYG-321	mycolate biosynthesis
Rpdx1_0266	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_0266	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_0282	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_0282	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_0287	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_0287	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Rpdx1_0287	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_0287	PWY-5723	Rubisco shunt
Rpdx1_0287	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_0287	PWY-6886	1-butanol autotrophic biosynthesis
Rpdx1_0287	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_0287	PWY-7003	glycerol degradation to butanol
Rpdx1_0287	PWY-7124	ethylene biosynthesis V (engineered)
Rpdx1_0287	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Rpdx1_0288	PWY-2941	L-lysine biosynthesis II
Rpdx1_0288	PWY-2942	L-lysine biosynthesis III
Rpdx1_0288	PWY-5097	L-lysine biosynthesis VI
Rpdx1_0290	PWY-5686	UMP biosynthesis
Rpdx1_0299	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Rpdx1_0306	PWY-6157	autoinducer AI-1 biosynthesis
Rpdx1_0311	PWY-3961	phosphopantothenate biosynthesis II
Rpdx1_0330	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_0341	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_0366	PWY-5350	thiosulfate disproportionation III (rhodanese)
Rpdx1_0372	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_0372	PWY-5723	Rubisco shunt
Rpdx1_0378	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_0378	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_0380	PWY-5667	CDP-diacylglycerol biosynthesis I
Rpdx1_0380	PWY-5981	CDP-diacylglycerol biosynthesis III
Rpdx1_0384	PWY-2941	L-lysine biosynthesis II
Rpdx1_0384	PWY-5097	L-lysine biosynthesis VI
Rpdx1_0393	PWY-6829	tRNA methylation (yeast)
Rpdx1_0393	PWY-7285	methylwyosine biosynthesis
Rpdx1_0393	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Rpdx1_0403	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_0403	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_0403	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_0403	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_0405	PWY-2941	L-lysine biosynthesis II
Rpdx1_0405	PWY-2942	L-lysine biosynthesis III
Rpdx1_0405	PWY-5097	L-lysine biosynthesis VI
Rpdx1_0405	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_0405	PWY-6559	spermidine biosynthesis II
Rpdx1_0405	PWY-6562	norspermidine biosynthesis
Rpdx1_0405	PWY-7153	grixazone biosynthesis
Rpdx1_0405	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_0409	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Rpdx1_0419	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0419	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Rpdx1_0419	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_0419	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_0419	PWY-6728	methylaspartate cycle
Rpdx1_0419	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_0419	PWY-7254	TCA cycle VII (acetate-producers)
Rpdx1_0419	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_0420	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0420	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Rpdx1_0420	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_0420	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_0420	PWY-6728	methylaspartate cycle
Rpdx1_0420	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_0420	PWY-7254	TCA cycle VII (acetate-producers)
Rpdx1_0420	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_0421	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Rpdx1_0421	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_0426	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Rpdx1_0426	PWY-7118	chitin degradation to ethanol
Rpdx1_0446	PWY-1622	formaldehyde assimilation I (serine pathway)
Rpdx1_0446	PWY-5392	reductive TCA cycle II
Rpdx1_0446	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_0446	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_0446	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_0446	PWY-6728	methylaspartate cycle
Rpdx1_0446	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_0446	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_0446	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_0447	PWY-5392	reductive TCA cycle II
Rpdx1_0447	PWY-5537	pyruvate fermentation to acetate V
Rpdx1_0447	PWY-5538	pyruvate fermentation to acetate VI
Rpdx1_0447	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_0447	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_0447	PWY-6728	methylaspartate cycle
Rpdx1_0447	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_0447	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_0448	PWY-5392	reductive TCA cycle II
Rpdx1_0448	PWY-5537	pyruvate fermentation to acetate V
Rpdx1_0448	PWY-5538	pyruvate fermentation to acetate VI
Rpdx1_0448	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_0448	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_0448	PWY-6728	methylaspartate cycle
Rpdx1_0448	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_0448	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_0449	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Rpdx1_0450	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Rpdx1_0453	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Rpdx1_0453	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Rpdx1_0461	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_0463	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_0474	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_0474	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Rpdx1_0521	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0521	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_0521	PWY-6692	Fe(II) oxidation
Rpdx1_0521	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_0527	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Rpdx1_0529	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Rpdx1_0534	PWY-6164	3-dehydroquinate biosynthesis I
Rpdx1_0535	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_0539	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_0539	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_0539	PWY-5744	glyoxylate assimilation
Rpdx1_0539	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_0539	PWY-6679	jadomycin biosynthesis
Rpdx1_0539	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_0544	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_0544	PWY-2361	3-oxoadipate degradation
Rpdx1_0544	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Rpdx1_0550	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_0562	PWY-5676	acetyl-CoA fermentation to butanoate II
Rpdx1_0562	PWY-5741	ethylmalonyl-CoA pathway
Rpdx1_0562	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Rpdx1_0582	PWY-6157	autoinducer AI-1 biosynthesis
Rpdx1_0584	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Rpdx1_0584	PWY-7494	choline degradation IV
Rpdx1_0592	PWY-4081	glutathione redox reactions I
Rpdx1_0596	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_0596	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_0597	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_0597	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_0604	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_0604	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_0634	PWY-5692	allantoin degradation to glyoxylate II
Rpdx1_0634	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Rpdx1_0635	PWY-5694	allantoin degradation to glyoxylate I
Rpdx1_0635	PWY-5705	allantoin degradation to glyoxylate III
Rpdx1_0638	PWY-6936	seleno-amino acid biosynthesis
Rpdx1_0639	PWY-6123	inosine-5'-phosphate biosynthesis I
Rpdx1_0639	PWY-6124	inosine-5'-phosphate biosynthesis II
Rpdx1_0639	PWY-7234	inosine-5'-phosphate biosynthesis III
Rpdx1_0673	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_0684	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Rpdx1_0684	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Rpdx1_0684	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Rpdx1_0684	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Rpdx1_0684	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Rpdx1_0684	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Rpdx1_0684	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Rpdx1_0684	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Rpdx1_0684	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Rpdx1_0684	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Rpdx1_0685	PWY-2941	L-lysine biosynthesis II
Rpdx1_0685	PWY-2942	L-lysine biosynthesis III
Rpdx1_0685	PWY-5097	L-lysine biosynthesis VI
Rpdx1_0685	PWY-6559	spermidine biosynthesis II
Rpdx1_0685	PWY-6562	norspermidine biosynthesis
Rpdx1_0685	PWY-7153	grixazone biosynthesis
Rpdx1_0691	PWY-5386	methylglyoxal degradation I
Rpdx1_0694	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_0709	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_0709	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_0729	PWY-101	photosynthesis light reactions
Rpdx1_0729	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Rpdx1_0739	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Rpdx1_0739	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_0740	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_0741	PWY-7399	methylphosphonate degradation II
Rpdx1_0742	PWY-7399	methylphosphonate degradation II
Rpdx1_0744	PWY-7399	methylphosphonate degradation II
Rpdx1_0747	PWY-7399	methylphosphonate degradation II
Rpdx1_0754	PWY-7399	methylphosphonate degradation II
Rpdx1_0755	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_0763	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_0763	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Rpdx1_0764	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_0764	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_0764	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_0766	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_0766	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_0766	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_0769	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_0769	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_0769	PWY-6268	adenosylcobalamin salvage from cobalamin
Rpdx1_0769	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_0773	PWY-5443	aminopropanol phosphate biosynthesis I
Rpdx1_0783	PWY-1881	formate oxidation to CO<sub>2</sub>
Rpdx1_0783	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_0783	PWY-6696	oxalate degradation III
Rpdx1_0789	PWY-5506	methanol oxidation to formaldehyde IV
Rpdx1_0803	PWY-5278	sulfite oxidation III
Rpdx1_0803	PWY-5340	sulfate activation for sulfonation
Rpdx1_0803	PWY-6683	sulfate reduction III (assimilatory)
Rpdx1_0803	PWY-6932	selenate reduction
Rpdx1_0805	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_0936	PWY-4041	&gamma;-glutamyl cycle
Rpdx1_0936	PWY-5826	hypoglycin biosynthesis
Rpdx1_0949	PWY-6832	2-aminoethylphosphonate degradation II
Rpdx1_0954	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_0954	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_0954	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_0954	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_0957	PWY-5686	UMP biosynthesis
Rpdx1_0959	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_0959	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_0959	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_0959	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_0979	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_0979	PWY-5109	2-methylbutanoate biosynthesis
Rpdx1_0979	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Rpdx1_0979	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Rpdx1_0979	PWY-5177	glutaryl-CoA degradation
Rpdx1_0979	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_0979	PWY-6435	4-hydroxybenzoate biosynthesis V
Rpdx1_0979	PWY-6583	pyruvate fermentation to butanol I
Rpdx1_0979	PWY-6863	pyruvate fermentation to hexanol
Rpdx1_0979	PWY-6883	pyruvate fermentation to butanol II
Rpdx1_0979	PWY-6944	androstenedione degradation
Rpdx1_0979	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Rpdx1_0979	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Rpdx1_0979	PWY-7007	methyl ketone biosynthesis
Rpdx1_0979	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_0979	PWY-7094	fatty acid salvage
Rpdx1_0979	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Rpdx1_0979	PWY-735	jasmonic acid biosynthesis
Rpdx1_0979	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Rpdx1_0986	PWY-6840	homoglutathione biosynthesis
Rpdx1_0986	PWY-7255	ergothioneine biosynthesis I (bacteria)
Rpdx1_0997	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_0997	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_0997	PWY-6692	Fe(II) oxidation
Rpdx1_0997	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_1021	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_1021	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
Rpdx1_1050	PWY-3801	sucrose degradation II (sucrose synthase)
Rpdx1_1050	PWY-6527	stachyose degradation
Rpdx1_1050	PWY-6981	chitin biosynthesis
Rpdx1_1050	PWY-7238	sucrose biosynthesis II
Rpdx1_1050	PWY-7343	UDP-glucose biosynthesis
Rpdx1_1059	PWY-2941	L-lysine biosynthesis II
Rpdx1_1059	PWY-2942	L-lysine biosynthesis III
Rpdx1_1059	PWY-5097	L-lysine biosynthesis VI
Rpdx1_1074	PWY-6785	hydrogen production VIII
Rpdx1_1102	PWY-2301	<i>myo</i>-inositol biosynthesis
Rpdx1_1102	PWY-4702	phytate degradation I
Rpdx1_1102	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Rpdx1_1104	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Rpdx1_1104	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Rpdx1_1104	PWY-6897	thiamin salvage II
Rpdx1_1104	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Rpdx1_1104	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Rpdx1_1104	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Rpdx1_1104	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Rpdx1_1105	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_1105	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_1105	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_1105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_1105	PWY-7385	1,3-propanediol biosynthesis (engineered)
Rpdx1_1106	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_1106	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_1106	PWY-6886	1-butanol autotrophic biosynthesis
Rpdx1_1106	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_1106	PWY-7003	glycerol degradation to butanol
Rpdx1_1107	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_1107	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_1107	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_1107	PWY-7003	glycerol degradation to butanol
Rpdx1_1108	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_1108	PWY-5723	Rubisco shunt
Rpdx1_1108	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_1108	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_1108	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_1108	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_1115	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_1115	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_1115	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_1127	PWY-5169	cyanurate degradation
Rpdx1_1127	PWY-5703	urea degradation I
Rpdx1_1136	PWY-381	nitrate reduction II (assimilatory)
Rpdx1_1136	PWY-5675	nitrate reduction V (assimilatory)
Rpdx1_1136	PWY-6549	L-glutamine biosynthesis III
Rpdx1_1136	PWY-6963	ammonia assimilation cycle I
Rpdx1_1136	PWY-6964	ammonia assimilation cycle II
Rpdx1_1150	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_1163	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_1176	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_1176	PWY-6692	Fe(II) oxidation
Rpdx1_1176	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Rpdx1_1176	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_1203	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_1216	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_1216	PWY-6549	L-glutamine biosynthesis III
Rpdx1_1216	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_1216	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_1218	PWY-5316	nicotine biosynthesis
Rpdx1_1218	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_1218	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Rpdx1_1218	PWY-7342	superpathway of nicotine biosynthesis
Rpdx1_1219	PWY-5316	nicotine biosynthesis
Rpdx1_1219	PWY-7342	superpathway of nicotine biosynthesis
Rpdx1_1220	PWY-5316	nicotine biosynthesis
Rpdx1_1220	PWY-7342	superpathway of nicotine biosynthesis
Rpdx1_1236	PWY-5686	UMP biosynthesis
Rpdx1_1243	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1243	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1260	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_1260	PWY-6168	flavin biosynthesis III (fungi)
Rpdx1_1260	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Rpdx1_1301	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1301	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1302	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1302	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1332	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_1332	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_1332	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_1338	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_1340	PWY-5269	cardiolipin biosynthesis II
Rpdx1_1340	PWY-5668	cardiolipin biosynthesis I
Rpdx1_1361	PWY-6703	preQ<sub>0</sub> biosynthesis
Rpdx1_1363	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_1363	PWY-6692	Fe(II) oxidation
Rpdx1_1363	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Rpdx1_1363	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_1368	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Rpdx1_1368	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_1371	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_1371	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_1371	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_1371	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_1371	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_1371	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_1371	PWY-7096	triclosan resistance
Rpdx1_1371	PWYG-321	mycolate biosynthesis
Rpdx1_1373	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_1398	PWY-101	photosynthesis light reactions
Rpdx1_1398	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Rpdx1_1424	PWY-3221	dTDP-L-rhamnose biosynthesis II
Rpdx1_1424	PWY-6808	dTDP-D-forosamine biosynthesis
Rpdx1_1424	PWY-6942	dTDP-D-desosamine biosynthesis
Rpdx1_1424	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Rpdx1_1424	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Rpdx1_1424	PWY-6974	dTDP-L-olivose biosynthesis
Rpdx1_1424	PWY-6976	dTDP-L-mycarose biosynthesis
Rpdx1_1424	PWY-7104	dTDP-L-megosamine biosynthesis
Rpdx1_1424	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Rpdx1_1424	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Rpdx1_1424	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Rpdx1_1424	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Rpdx1_1424	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Rpdx1_1424	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Rpdx1_1424	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Rpdx1_1424	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Rpdx1_1471	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Rpdx1_1476	PWY-5392	reductive TCA cycle II
Rpdx1_1476	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_1476	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_1476	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_1476	PWY-6728	methylaspartate cycle
Rpdx1_1476	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_1476	PWY-7254	TCA cycle VII (acetate-producers)
Rpdx1_1476	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_1511	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_1511	PWY-6549	L-glutamine biosynthesis III
Rpdx1_1511	PWY-6728	methylaspartate cycle
Rpdx1_1511	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_1511	PWY-7124	ethylene biosynthesis V (engineered)
Rpdx1_1511	PWY-7254	TCA cycle VII (acetate-producers)
Rpdx1_1511	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Rpdx1_1522	PWY-6123	inosine-5'-phosphate biosynthesis I
Rpdx1_1522	PWY-6124	inosine-5'-phosphate biosynthesis II
Rpdx1_1522	PWY-7234	inosine-5'-phosphate biosynthesis III
Rpdx1_1523	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_1523	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_1523	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_1525	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_1525	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_1525	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_1526	PWY-6123	inosine-5'-phosphate biosynthesis I
Rpdx1_1526	PWY-6124	inosine-5'-phosphate biosynthesis II
Rpdx1_1526	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_1526	PWY-7234	inosine-5'-phosphate biosynthesis III
Rpdx1_1528	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_1528	PWY-5723	Rubisco shunt
Rpdx1_1530	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_1605	PWY-6098	diploterol and cycloartenol biosynthesis
Rpdx1_1605	PWY-7072	hopanoid biosynthesis (bacteria)
Rpdx1_1609	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_1618	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Rpdx1_1618	PWY-7494	choline degradation IV
Rpdx1_1632	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_1632	PWY-5109	2-methylbutanoate biosynthesis
Rpdx1_1632	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Rpdx1_1632	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Rpdx1_1632	PWY-5177	glutaryl-CoA degradation
Rpdx1_1632	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_1632	PWY-6435	4-hydroxybenzoate biosynthesis V
Rpdx1_1632	PWY-6583	pyruvate fermentation to butanol I
Rpdx1_1632	PWY-6863	pyruvate fermentation to hexanol
Rpdx1_1632	PWY-6883	pyruvate fermentation to butanol II
Rpdx1_1632	PWY-6944	androstenedione degradation
Rpdx1_1632	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Rpdx1_1632	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Rpdx1_1632	PWY-7007	methyl ketone biosynthesis
Rpdx1_1632	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_1632	PWY-7094	fatty acid salvage
Rpdx1_1632	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Rpdx1_1632	PWY-735	jasmonic acid biosynthesis
Rpdx1_1632	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Rpdx1_1640	PWY-6683	sulfate reduction III (assimilatory)
Rpdx1_1646	PWY-4261	glycerol degradation I
Rpdx1_1650	PWY-2201	folate transformations I
Rpdx1_1650	PWY-3841	folate transformations II
Rpdx1_1652	PWY-2201	folate transformations I
Rpdx1_1652	PWY-3841	folate transformations II
Rpdx1_1654	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Rpdx1_1655	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Rpdx1_1655	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Rpdx1_1664	PWY-5988	wound-induced proteolysis I
Rpdx1_1664	PWY-6018	seed germination protein turnover
Rpdx1_1687	PWY-5704	urea degradation II
Rpdx1_1688	PWY-5704	urea degradation II
Rpdx1_1689	PWY-5704	urea degradation II
Rpdx1_1694	PWY-723	alkylnitronates degradation
Rpdx1_1696	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Rpdx1_1704	PWY-2661	trehalose biosynthesis V
Rpdx1_1705	PWY-2661	trehalose biosynthesis V
Rpdx1_1707	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Rpdx1_1707	PWY-622	starch biosynthesis
Rpdx1_1708	PWY-2622	trehalose biosynthesis IV
Rpdx1_1710	PWY-5941	glycogen degradation II (eukaryotic)
Rpdx1_1710	PWY-6724	starch degradation II
Rpdx1_1710	PWY-6737	starch degradation V
Rpdx1_1710	PWY-7238	sucrose biosynthesis II
Rpdx1_1713	PWY-5530	sorbitol biosynthesis II
Rpdx1_1713	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_1714	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Rpdx1_1714	PWY-6855	chitin degradation I (archaea)
Rpdx1_1714	PWY-6906	chitin derivatives degradation
Rpdx1_1715	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Rpdx1_1717	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_1717	PWY-3801	sucrose degradation II (sucrose synthase)
Rpdx1_1717	PWY-5054	sorbitol biosynthesis I
Rpdx1_1717	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Rpdx1_1717	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Rpdx1_1717	PWY-5659	GDP-mannose biosynthesis
Rpdx1_1717	PWY-5723	Rubisco shunt
Rpdx1_1717	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_1717	PWY-621	sucrose degradation III (sucrose invertase)
Rpdx1_1717	PWY-622	starch biosynthesis
Rpdx1_1717	PWY-6531	mannitol cycle
Rpdx1_1717	PWY-6981	chitin biosynthesis
Rpdx1_1717	PWY-7238	sucrose biosynthesis II
Rpdx1_1717	PWY-7347	sucrose biosynthesis III
Rpdx1_1717	PWY-7385	1,3-propanediol biosynthesis (engineered)
Rpdx1_1720	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_1737	PWY-5350	thiosulfate disproportionation III (rhodanese)
Rpdx1_1777	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Rpdx1_1778	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Rpdx1_1778	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Rpdx1_1778	PWY-6897	thiamin salvage II
Rpdx1_1778	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Rpdx1_1778	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Rpdx1_1778	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Rpdx1_1778	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Rpdx1_1779	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_1779	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_1792	PWY-4202	arsenate detoxification I (glutaredoxin)
Rpdx1_1799	PWY-4202	arsenate detoxification I (glutaredoxin)
Rpdx1_1799	PWY-4621	arsenate detoxification II (glutaredoxin)
Rpdx1_1818	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1818	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1819	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_1819	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Rpdx1_1819	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_1820	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1820	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1822	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_1822	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Rpdx1_1822	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Rpdx1_1822	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_1823	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1823	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1825	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1825	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1828	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1828	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1853	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_1853	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_1857	PWY-5392	reductive TCA cycle II
Rpdx1_1857	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Rpdx1_1857	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_1857	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_1857	PWY-6728	methylaspartate cycle
Rpdx1_1857	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_1857	PWY-7254	TCA cycle VII (acetate-producers)
Rpdx1_1857	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_1864	PWY-3841	folate transformations II
Rpdx1_1864	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_1864	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_1864	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Rpdx1_1864	PWY-7199	pyrimidine deoxyribonucleosides salvage
Rpdx1_1864	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Rpdx1_1866	PWY-3841	folate transformations II
Rpdx1_1866	PWY-6614	tetrahydrofolate biosynthesis
Rpdx1_1902	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_1902	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_1902	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_1902	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_1920	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_1920	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_1920	PWY-5744	glyoxylate assimilation
Rpdx1_1920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_1920	PWY-6679	jadomycin biosynthesis
Rpdx1_1920	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_1925	PWY-5642	2,4-dinitrotoluene degradation
Rpdx1_1925	PWY-6373	acrylate degradation
Rpdx1_1933	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_1947	PWY-6936	seleno-amino acid biosynthesis
Rpdx1_1947	PWY-7274	D-cycloserine biosynthesis
Rpdx1_1991	PWY-5663	tetrahydrobiopterin biosynthesis I
Rpdx1_1991	PWY-5664	tetrahydrobiopterin biosynthesis II
Rpdx1_1991	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Rpdx1_1991	PWY-6703	preQ<sub>0</sub> biosynthesis
Rpdx1_1991	PWY-6983	tetrahydrobiopterin biosynthesis III
Rpdx1_1991	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Rpdx1_2005	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Rpdx1_2005	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Rpdx1_2005	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Rpdx1_2048	PWY-6012	acyl carrier protein metabolism I
Rpdx1_2048	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Rpdx1_2062	PWY-5659	GDP-mannose biosynthesis
Rpdx1_2062	PWY-6073	alginate biosynthesis I (algal)
Rpdx1_2062	PWY-6082	alginate biosynthesis II (bacterial)
Rpdx1_2062	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Rpdx1_2063	PWY-6749	CMP-legionaminate biosynthesis I
Rpdx1_2086	PWY-6157	autoinducer AI-1 biosynthesis
Rpdx1_2125	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_2125	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Rpdx1_2125	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Rpdx1_2125	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_2127	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_2127	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Rpdx1_2127	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Rpdx1_2127	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_2140	PWY-6857	retinol biosynthesis
Rpdx1_2204	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2227	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_2227	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_2227	PWY-5744	glyoxylate assimilation
Rpdx1_2227	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_2227	PWY-6679	jadomycin biosynthesis
Rpdx1_2227	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_2253	PWY-6339	syringate degradation
Rpdx1_2256	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Rpdx1_2256	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Rpdx1_2306	PWY-5686	UMP biosynthesis
Rpdx1_2307	PWY-5686	UMP biosynthesis
Rpdx1_2308	PWY-5081	L-tryptophan degradation VIII (to tryptophol)
Rpdx1_2312	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Rpdx1_2312	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Rpdx1_2313	PWY-723	alkylnitronates degradation
Rpdx1_2318	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_2326	PWY-6654	phosphopantothenate biosynthesis III
Rpdx1_2337	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_2337	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_2337	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_2337	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_2342	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_2352	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_2352	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Rpdx1_2352	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_2353	PWY-5367	petroselinate biosynthesis
Rpdx1_2353	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_2353	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_2353	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_2353	PWY-5994	palmitate biosynthesis I (animals and fungi)
Rpdx1_2353	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_2353	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_2353	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_2353	PWY-6951	Rpdx1_2353
Rpdx1_2353	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Rpdx1_2353	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_2353	PWYG-321	mycolate biosynthesis
Rpdx1_2358	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2367	PWY-5988	wound-induced proteolysis I
Rpdx1_2367	PWY-6018	seed germination protein turnover
Rpdx1_2371	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Rpdx1_2371	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Rpdx1_2371	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_2371	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2371	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Rpdx1_2371	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Rpdx1_2371	PWY-7205	CMP phosphorylation
Rpdx1_2371	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Rpdx1_2371	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2371	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2371	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2371	PWY-7224	purine deoxyribonucleosides salvage
Rpdx1_2371	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_2371	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2375	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_2375	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Rpdx1_2376	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_2376	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_2376	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_2377	PWY-5269	cardiolipin biosynthesis II
Rpdx1_2377	PWY-5668	cardiolipin biosynthesis I
Rpdx1_2385	PWY-1281	sulfoacetaldehyde degradation I
Rpdx1_2385	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_2385	PWY-5482	pyruvate fermentation to acetate II
Rpdx1_2385	PWY-5485	pyruvate fermentation to acetate IV
Rpdx1_2385	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_2385	PWY-6637	sulfolactate degradation II
Rpdx1_2385	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_2387	PWY-3841	folate transformations II
Rpdx1_2387	PWY-6614	tetrahydrofolate biosynthesis
Rpdx1_2408	PWY-6840	homoglutathione biosynthesis
Rpdx1_2408	PWY-7255	ergothioneine biosynthesis I (bacteria)
Rpdx1_2436	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Rpdx1_2448	PWY-4041	&gamma;-glutamyl cycle
Rpdx1_2448	PWY-5826	hypoglycin biosynthesis
Rpdx1_2464	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Rpdx1_2464	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_2464	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Rpdx1_2464	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Rpdx1_2464	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2464	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2464	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_2464	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2467	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_2470	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Rpdx1_2474	PWY-381	nitrate reduction II (assimilatory)
Rpdx1_2474	PWY-5675	nitrate reduction V (assimilatory)
Rpdx1_2474	PWY-6549	L-glutamine biosynthesis III
Rpdx1_2474	PWY-6963	ammonia assimilation cycle I
Rpdx1_2474	PWY-6964	ammonia assimilation cycle II
Rpdx1_2476	PWY-6938	NADH repair
Rpdx1_2508	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Rpdx1_2565	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_2565	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Rpdx1_2565	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Rpdx1_2565	PWY-6692	Fe(II) oxidation
Rpdx1_2567	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Rpdx1_2567	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Rpdx1_2569	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_2569	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_2569	PWY-6728	methylaspartate cycle
Rpdx1_2569	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_2589	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_2593	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_2593	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_2593	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_2593	PWY-5994	palmitate biosynthesis I (animals and fungi)
Rpdx1_2593	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_2593	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_2593	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_2593	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_2593	PWYG-321	mycolate biosynthesis
Rpdx1_2598	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_2599	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_2602	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_2616	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_2616	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_2616	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_2616	PWY-7003	glycerol degradation to butanol
Rpdx1_2618	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Rpdx1_2618	PWY-7177	UTP and CTP dephosphorylation II
Rpdx1_2618	PWY-7185	UTP and CTP dephosphorylation I
Rpdx1_2625	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Rpdx1_2625	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Rpdx1_2628	PWY-6700	queuosine biosynthesis
Rpdx1_2629	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_2629	PWY-1622	formaldehyde assimilation I (serine pathway)
Rpdx1_2629	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Rpdx1_2629	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_2629	PWY-5723	Rubisco shunt
Rpdx1_2629	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_2629	PWY-6886	1-butanol autotrophic biosynthesis
Rpdx1_2629	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_2629	PWY-7003	glycerol degradation to butanol
Rpdx1_2629	PWY-7124	ethylene biosynthesis V (engineered)
Rpdx1_2629	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Rpdx1_2640	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Rpdx1_2640	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Rpdx1_2659	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Rpdx1_2662	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_2662	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Rpdx1_2662	PWY-6596	adenosine nucleotides degradation I
Rpdx1_2662	PWY-6606	guanosine nucleotides degradation II
Rpdx1_2662	PWY-6607	guanosine nucleotides degradation I
Rpdx1_2662	PWY-6608	guanosine nucleotides degradation III
Rpdx1_2662	PWY-7185	UTP and CTP dephosphorylation I
Rpdx1_2694	PWY-6703	preQ<sub>0</sub> biosynthesis
Rpdx1_2697	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Rpdx1_2697	PWY-581	indole-3-acetate biosynthesis II
Rpdx1_2697	PWY-7308	acrylonitrile degradation I
Rpdx1_2698	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Rpdx1_2698	PWY-581	indole-3-acetate biosynthesis II
Rpdx1_2698	PWY-7308	acrylonitrile degradation I
Rpdx1_2699	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Rpdx1_2699	PWY-581	indole-3-acetate biosynthesis II
Rpdx1_2699	PWY-7308	acrylonitrile degradation I
Rpdx1_2705	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Rpdx1_2705	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_2708	PWY-1622	formaldehyde assimilation I (serine pathway)
Rpdx1_2708	PWY-181	photorespiration
Rpdx1_2708	PWY-2161	folate polyglutamylation
Rpdx1_2708	PWY-2201	folate transformations I
Rpdx1_2708	PWY-3661	glycine betaine degradation I
Rpdx1_2708	PWY-3661-1	glycine betaine degradation II (mammalian)
Rpdx1_2708	PWY-3841	folate transformations II
Rpdx1_2708	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_2709	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_2727	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Rpdx1_2727	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Rpdx1_2727	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_2727	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Rpdx1_2727	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Rpdx1_2727	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Rpdx1_2728	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_2728	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_2740	PWY-5344	L-homocysteine biosynthesis
Rpdx1_2740	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Rpdx1_2757	PWY-6655	xanthan biosynthesis
Rpdx1_2757	PWY-6658	acetan biosynthesis
Rpdx1_2763	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_2773	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Rpdx1_2773	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Rpdx1_2773	PWY-6896	thiamin salvage I
Rpdx1_2773	PWY-6897	thiamin salvage II
Rpdx1_2775	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_2775	PWY-6168	flavin biosynthesis III (fungi)
Rpdx1_2776	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_2776	PWY-6168	flavin biosynthesis III (fungi)
Rpdx1_2776	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_2779	PWY-1622	formaldehyde assimilation I (serine pathway)
Rpdx1_2779	PWY-181	photorespiration
Rpdx1_2779	PWY-2161	folate polyglutamylation
Rpdx1_2779	PWY-2201	folate transformations I
Rpdx1_2779	PWY-3661	glycine betaine degradation I
Rpdx1_2779	PWY-3661-1	glycine betaine degradation II (mammalian)
Rpdx1_2779	PWY-3841	folate transformations II
Rpdx1_2779	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_2792	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_2792	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_2812	PWY-6012	acyl carrier protein metabolism I
Rpdx1_2812	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Rpdx1_2821	PWY-2941	L-lysine biosynthesis II
Rpdx1_2821	PWY-2942	L-lysine biosynthesis III
Rpdx1_2821	PWY-5097	L-lysine biosynthesis VI
Rpdx1_2835	PWY-6826	phosphatidylcholine biosynthesis VI
Rpdx1_2847	PWY-6749	CMP-legionaminate biosynthesis I
Rpdx1_2848	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Rpdx1_2865	PWY-6700	queuosine biosynthesis
Rpdx1_2866	PWY-6700	queuosine biosynthesis
Rpdx1_2881	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_2884	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Rpdx1_2884	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Rpdx1_2884	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Rpdx1_2909	PWY-6936	seleno-amino acid biosynthesis
Rpdx1_2927	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_2927	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_2927	PWY-5744	glyoxylate assimilation
Rpdx1_2927	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_2927	PWY-6679	jadomycin biosynthesis
Rpdx1_2927	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_3004	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Rpdx1_3004	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Rpdx1_3004	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Rpdx1_3009	PWY-7425	2-chloroacrylate degradation I
Rpdx1_3011	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_3016	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_3024	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_3024	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_3045	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_3045	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_3045	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_3045	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Rpdx1_3049	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_3049	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_3049	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_3049	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Rpdx1_3072	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_3072	PWY-6416	quinate degradation II
Rpdx1_3072	PWY-6707	gallate biosynthesis
Rpdx1_3118	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_3118	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_3118	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_3127	PWY-4041	&gamma;-glutamyl cycle
Rpdx1_3137	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Rpdx1_3138	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
Rpdx1_3239	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_3239	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Rpdx1_3239	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_3239	PWY-5723	Rubisco shunt
Rpdx1_3239	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_3239	PWY-6886	1-butanol autotrophic biosynthesis
Rpdx1_3239	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_3239	PWY-7003	glycerol degradation to butanol
Rpdx1_3239	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Rpdx1_3239	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_3317	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_3320	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Rpdx1_3320	PWY-6596	adenosine nucleotides degradation I
Rpdx1_3320	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_3332	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_3339	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Rpdx1_3339	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Rpdx1_3339	PWY-6936	seleno-amino acid biosynthesis
Rpdx1_3339	PWY-702	L-methionine biosynthesis II
Rpdx1_3352	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_3352	PWY-5723	Rubisco shunt
Rpdx1_3371	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_3371	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_3371	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_3371	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_3382	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_3382	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_3382	PWY-5744	glyoxylate assimilation
Rpdx1_3382	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_3382	PWY-6679	jadomycin biosynthesis
Rpdx1_3382	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_3417	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Rpdx1_3419	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_3419	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_3419	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_3420	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_3420	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_3420	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_3425	PWY-5194	siroheme biosynthesis
Rpdx1_3425	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Rpdx1_3428	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Rpdx1_3430	PWY-5194	siroheme biosynthesis
Rpdx1_3430	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Rpdx1_3432	PWY-5194	siroheme biosynthesis
Rpdx1_3432	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Rpdx1_3443	PWY-6748	nitrate reduction VII (denitrification)
Rpdx1_3443	PWY-7084	nitrifier denitrification
Rpdx1_3463	PWY-6871	3-methylbutanol biosynthesis
Rpdx1_3464	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Rpdx1_3477	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_3477	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_3477	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_3477	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_3481	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_3481	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_3481	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_3481	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Rpdx1_3481	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Rpdx1_3481	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Rpdx1_3481	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_3482	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_3482	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_3482	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_3482	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Rpdx1_3482	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Rpdx1_3482	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Rpdx1_3482	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_3483	PWY-2781	<i>cis</i>-zeatin biosynthesis
Rpdx1_3491	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_3491	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_3491	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_3491	PWY-5994	palmitate biosynthesis I (animals and fungi)
Rpdx1_3491	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_3491	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_3491	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_3491	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_3491	PWYG-321	mycolate biosynthesis
Rpdx1_3502	PWY-5669	phosphatidylethanolamine biosynthesis I
Rpdx1_3503	PWY-5669	phosphatidylethanolamine biosynthesis I
Rpdx1_3507	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_3507	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_3509	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_3509	PWY-6871	3-methylbutanol biosynthesis
Rpdx1_3520	PWY-5381	pyridine nucleotide cycling (plants)
Rpdx1_3520	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Rpdx1_3521	PWY-7039	phosphatidate metabolism, as a signaling molecule
Rpdx1_3522	PWY-6164	3-dehydroquinate biosynthesis I
Rpdx1_3523	PWY-4081	glutathione redox reactions I
Rpdx1_3525	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_3525	PWY-5723	Rubisco shunt
Rpdx1_3526	PWY-181	photorespiration
Rpdx1_3528	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_3551	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Rpdx1_3551	PWY-3162	L-tryptophan degradation V (side chain pathway)
Rpdx1_3551	PWY-5057	L-valine degradation II
Rpdx1_3551	PWY-5076	L-leucine degradation III
Rpdx1_3551	PWY-5078	L-isoleucine degradation II
Rpdx1_3551	PWY-5079	L-phenylalanine degradation III
Rpdx1_3551	PWY-5082	L-methionine degradation III
Rpdx1_3551	PWY-5480	pyruvate fermentation to ethanol I
Rpdx1_3551	PWY-5486	pyruvate fermentation to ethanol II
Rpdx1_3551	PWY-5751	phenylethanol biosynthesis
Rpdx1_3551	PWY-6028	acetoin degradation
Rpdx1_3551	PWY-6313	serotonin degradation
Rpdx1_3551	PWY-6333	acetaldehyde biosynthesis I
Rpdx1_3551	PWY-6342	noradrenaline and adrenaline degradation
Rpdx1_3551	PWY-6587	pyruvate fermentation to ethanol III
Rpdx1_3551	PWY-6802	salidroside biosynthesis
Rpdx1_3551	PWY-6871	3-methylbutanol biosynthesis
Rpdx1_3551	PWY-7013	L-1,2-propanediol degradation
Rpdx1_3551	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_3551	PWY-7118	chitin degradation to ethanol
Rpdx1_3551	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Rpdx1_3551	PWY-7557	dehydrodiconiferyl alcohol degradation
Rpdx1_3552	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_3554	PWY-6420	pyrroloquinoline quinone biosynthesis
Rpdx1_3558	PWY-6695	oxalate degradation II
Rpdx1_3559	PWY-6654	phosphopantothenate biosynthesis III
Rpdx1_3561	PWY-723	alkylnitronates degradation
Rpdx1_3576	PWY-7142	cyanide detoxification II
Rpdx1_3597	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Rpdx1_3685	PWY-6614	tetrahydrofolate biosynthesis
Rpdx1_3686	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Rpdx1_3686	PWY-6148	tetrahydromethanopterin biosynthesis
Rpdx1_3686	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Rpdx1_3686	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Rpdx1_3687	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Rpdx1_3687	PWY-6148	tetrahydromethanopterin biosynthesis
Rpdx1_3687	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Rpdx1_3687	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Rpdx1_3688	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_3688	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_3688	PWY-6728	methylaspartate cycle
Rpdx1_3688	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_3689	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Rpdx1_3690	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_3690	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_3690	PWY-6728	methylaspartate cycle
Rpdx1_3690	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_3751	PWY-6215	4-chlorobenzoate degradation
Rpdx1_3754	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_3760	PWY-1622	formaldehyde assimilation I (serine pathway)
Rpdx1_3760	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Rpdx1_3760	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_3760	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_3760	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Rpdx1_3760	PWY-6549	L-glutamine biosynthesis III
Rpdx1_3760	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Rpdx1_3760	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Rpdx1_3760	PWY-7124	ethylene biosynthesis V (engineered)
Rpdx1_3792	PWY-3121	linamarin degradation
Rpdx1_3792	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Rpdx1_3792	PWY-6002	lotaustralin degradation
Rpdx1_3792	PWY-6788	cellulose degradation II (fungi)
Rpdx1_3792	PWY-7089	taxiphyllin bioactivation
Rpdx1_3792	PWY-7091	linustatin bioactivation
Rpdx1_3792	PWY-7092	neolinustatin bioactivation
Rpdx1_3794	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_3801	PWY-1341	phenylacetate degradation II (anaerobic)
Rpdx1_3801	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Rpdx1_3804	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Rpdx1_3804	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Rpdx1_3824	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_3829	PWY-6854	ethylene biosynthesis III (microbes)
Rpdx1_3837	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Rpdx1_3837	PWY-7494	choline degradation IV
Rpdx1_3888	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_3924	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Rpdx1_3924	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Rpdx1_3924	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Rpdx1_3928	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_3928	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_3942	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Rpdx1_3942	PWY-6853	ethylene biosynthesis II (microbes)
Rpdx1_3942	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Rpdx1_3956	PWY-5344	L-homocysteine biosynthesis
Rpdx1_3956	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Rpdx1_3959	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_3959	PWY-5723	Rubisco shunt
Rpdx1_3960	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_3960	PWY-5723	Rubisco shunt
Rpdx1_3966	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_3966	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
Rpdx1_3974	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3974	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3975	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3975	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3976	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3976	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3977	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3977	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3978	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3978	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3981	PWY-5874	heme degradation
Rpdx1_3981	PWY-5915	phycoerythrobilin biosynthesis I
Rpdx1_3981	PWY-5917	phycocyanobilin biosynthesis
Rpdx1_3981	PWY-7170	phytochromobilin biosynthesis
Rpdx1_3991	PWY-101	photosynthesis light reactions
Rpdx1_3991	PWY-6785	hydrogen production VIII
Rpdx1_3992	PWY-101	photosynthesis light reactions
Rpdx1_3992	PWY-6785	hydrogen production VIII
Rpdx1_3996	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Rpdx1_3996	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3996	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3997	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Rpdx1_3997	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_3997	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_3998	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
Rpdx1_4007	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_4007	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_4010	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_4010	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_4012	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_4012	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_4014	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_4014	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_4015	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Rpdx1_4015	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Rpdx1_4016	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_4016	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_4037	PWY-2723	trehalose degradation V
Rpdx1_4037	PWY-3801	sucrose degradation II (sucrose synthase)
Rpdx1_4037	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Rpdx1_4037	PWY-5661	GDP-glucose biosynthesis
Rpdx1_4037	PWY-5661-1	Rpdx1_4037
Rpdx1_4037	PWY-5940	streptomycin biosynthesis
Rpdx1_4037	PWY-5941	glycogen degradation II (eukaryotic)
Rpdx1_4037	PWY-622	starch biosynthesis
Rpdx1_4037	PWY-6731	starch degradation III
Rpdx1_4037	PWY-6737	starch degradation V
Rpdx1_4037	PWY-6749	CMP-legionaminate biosynthesis I
Rpdx1_4037	PWY-7238	sucrose biosynthesis II
Rpdx1_4037	PWY-7343	UDP-glucose biosynthesis
Rpdx1_4053	PWY-5169	cyanurate degradation
Rpdx1_4053	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_4056	PWY-5169	cyanurate degradation
Rpdx1_4056	PWY-5703	urea degradation I
Rpdx1_4056	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Rpdx1_4059	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_4059	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_4059	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_4059	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Rpdx1_4064	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_4064	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_4064	PWY-6692	Fe(II) oxidation
Rpdx1_4064	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_4070	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_4070	PWY-5743	3-hydroxypropanoate cycle
Rpdx1_4070	PWY-5744	glyoxylate assimilation
Rpdx1_4070	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_4070	PWY-6679	jadomycin biosynthesis
Rpdx1_4070	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Rpdx1_4087	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_4087	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_4087	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_4087	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Rpdx1_4109	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_4110	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_4114	PWY-6080	4-ethylphenol degradation (anaerobic)
Rpdx1_4114	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_4115	PWY-6080	4-ethylphenol degradation (anaerobic)
Rpdx1_4115	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_4116	PWY-6080	4-ethylphenol degradation (anaerobic)
Rpdx1_4116	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_4133	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Rpdx1_4133	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Rpdx1_4153	PWY-4381	fatty acid biosynthesis initiation I
Rpdx1_4170	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_4170	PWY-5686	UMP biosynthesis
Rpdx1_4170	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_4187	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_4187	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_4191	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_4191	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_4191	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_4213	PWY-1341	phenylacetate degradation II (anaerobic)
Rpdx1_4213	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Rpdx1_4230	PWY-6910	hydroxymethylpyrimidine salvage
Rpdx1_4230	PWY-7356	thiamin salvage IV (yeast)
Rpdx1_4230	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Rpdx1_4242	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Rpdx1_4242	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Rpdx1_4242	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Rpdx1_4247	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Rpdx1_4250	PWY-3821	galactose degradation III
Rpdx1_4250	PWY-6317	galactose degradation I (Leloir pathway)
Rpdx1_4250	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Rpdx1_4250	PWY-6527	stachyose degradation
Rpdx1_4250	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Rpdx1_4250	PWY-7344	UDP-D-galactose biosynthesis
Rpdx1_4274	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Rpdx1_4275	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Rpdx1_4275	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Rpdx1_4277	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Rpdx1_4283	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Rpdx1_4283	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Rpdx1_4283	PWY-6936	seleno-amino acid biosynthesis
Rpdx1_4283	PWY-702	L-methionine biosynthesis II
Rpdx1_4290	PWY-2201	folate transformations I
Rpdx1_4290	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_4291	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_4291	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Rpdx1_4308	PWY-3221	dTDP-L-rhamnose biosynthesis II
Rpdx1_4308	PWY-6808	dTDP-D-forosamine biosynthesis
Rpdx1_4308	PWY-6942	dTDP-D-desosamine biosynthesis
Rpdx1_4308	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Rpdx1_4308	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Rpdx1_4308	PWY-6974	dTDP-L-olivose biosynthesis
Rpdx1_4308	PWY-6976	dTDP-L-mycarose biosynthesis
Rpdx1_4308	PWY-7104	dTDP-L-megosamine biosynthesis
Rpdx1_4308	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Rpdx1_4308	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Rpdx1_4308	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Rpdx1_4308	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Rpdx1_4308	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Rpdx1_4308	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Rpdx1_4308	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Rpdx1_4308	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Rpdx1_4313	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Rpdx1_4318	PWY-3221	dTDP-L-rhamnose biosynthesis II
Rpdx1_4318	PWY-6808	dTDP-D-forosamine biosynthesis
Rpdx1_4318	PWY-6942	dTDP-D-desosamine biosynthesis
Rpdx1_4318	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Rpdx1_4318	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Rpdx1_4318	PWY-6974	dTDP-L-olivose biosynthesis
Rpdx1_4318	PWY-6976	dTDP-L-mycarose biosynthesis
Rpdx1_4318	PWY-7104	dTDP-L-megosamine biosynthesis
Rpdx1_4318	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Rpdx1_4318	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Rpdx1_4318	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Rpdx1_4318	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Rpdx1_4318	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Rpdx1_4318	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Rpdx1_4318	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Rpdx1_4318	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Rpdx1_4325	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Rpdx1_4325	PWY-5739	GDP-D-perosamine biosynthesis
Rpdx1_4325	PWY-5740	GDP-L-colitose biosynthesis
Rpdx1_4325	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Rpdx1_4327	PWY-5659	GDP-mannose biosynthesis
Rpdx1_4327	PWY-6073	alginate biosynthesis I (algal)
Rpdx1_4327	PWY-6082	alginate biosynthesis II (bacterial)
Rpdx1_4327	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Rpdx1_4328	PWY-6749	CMP-legionaminate biosynthesis I
Rpdx1_4333	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_4333	PWY-5686	UMP biosynthesis
Rpdx1_4333	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_4349	PWY-6523	nitrite-dependent anaerobic methane oxidation
Rpdx1_4349	PWY-6748	nitrate reduction VII (denitrification)
Rpdx1_4349	PWY-7084	nitrifier denitrification
Rpdx1_4351	PWY-7181	pyrimidine deoxyribonucleosides degradation
Rpdx1_4385	PWY-6123	inosine-5'-phosphate biosynthesis I
Rpdx1_4385	PWY-7234	inosine-5'-phosphate biosynthesis III
Rpdx1_4394	PWY-3781	aerobic respiration I (cytochrome c)
Rpdx1_4394	PWY-4521	arsenite oxidation I (respiratory)
Rpdx1_4394	PWY-6692	Fe(II) oxidation
Rpdx1_4394	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Rpdx1_4402	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Rpdx1_4405	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_4405	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Rpdx1_4405	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_4405	PWY-5723	Rubisco shunt
Rpdx1_4405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_4405	PWY-6886	1-butanol autotrophic biosynthesis
Rpdx1_4405	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_4405	PWY-7003	glycerol degradation to butanol
Rpdx1_4405	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Rpdx1_4405	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Rpdx1_4413	PWY-7425	2-chloroacrylate degradation I
Rpdx1_4426	PWY-381	nitrate reduction II (assimilatory)
Rpdx1_4426	PWY-5675	nitrate reduction V (assimilatory)
Rpdx1_4426	PWY-6549	L-glutamine biosynthesis III
Rpdx1_4426	PWY-6963	ammonia assimilation cycle I
Rpdx1_4426	PWY-6964	ammonia assimilation cycle II
Rpdx1_4430	PWY-6683	sulfate reduction III (assimilatory)
Rpdx1_4432	PWY-5194	siroheme biosynthesis
Rpdx1_4432	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Rpdx1_4436	PWY-6728	methylaspartate cycle
Rpdx1_4436	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_4436	PWY-7118	chitin degradation to ethanol
Rpdx1_4436	PWY-7294	xylose degradation IV
Rpdx1_4436	PWY-7295	L-arabinose degradation IV
Rpdx1_4459	PWY-5392	reductive TCA cycle II
Rpdx1_4459	PWY-5537	pyruvate fermentation to acetate V
Rpdx1_4459	PWY-5538	pyruvate fermentation to acetate VI
Rpdx1_4459	PWY-5690	TCA cycle II (plants and fungi)
Rpdx1_4459	PWY-5913	TCA cycle VI (obligate autotrophs)
Rpdx1_4459	PWY-6728	methylaspartate cycle
Rpdx1_4459	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_4459	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Rpdx1_4470	PWY-5344	L-homocysteine biosynthesis
Rpdx1_4470	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Rpdx1_4489	PWY-702	L-methionine biosynthesis II
Rpdx1_4490	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_4510	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Rpdx1_4533	PWY-6749	CMP-legionaminate biosynthesis I
Rpdx1_4538	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_4581	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_4581	PWY-6168	flavin biosynthesis III (fungi)
Rpdx1_4583	PWY-3341	L-proline biosynthesis III
Rpdx1_4583	PWY-4981	L-proline biosynthesis II (from arginine)
Rpdx1_4583	PWY-6344	L-ornithine degradation II (Stickland reaction)
Rpdx1_4587	PWY-5057	L-valine degradation II
Rpdx1_4587	PWY-5076	L-leucine degradation III
Rpdx1_4587	PWY-5078	L-isoleucine degradation II
Rpdx1_4587	PWY-5101	L-isoleucine biosynthesis II
Rpdx1_4587	PWY-5103	L-isoleucine biosynthesis III
Rpdx1_4587	PWY-5104	L-isoleucine biosynthesis IV
Rpdx1_4587	PWY-5108	L-isoleucine biosynthesis V
Rpdx1_4597	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Rpdx1_4597	PWY-6167	flavin biosynthesis II (archaea)
Rpdx1_4597	PWY-6168	flavin biosynthesis III (fungi)
Rpdx1_4610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Rpdx1_4629	PWY-4261	glycerol degradation I
Rpdx1_4629	PWY-6118	glycerol-3-phosphate shuttle
Rpdx1_4629	PWY-6952	glycerophosphodiester degradation
Rpdx1_4637	PWY-4041	&gamma;-glutamyl cycle
Rpdx1_4637	PWY-5826	hypoglycin biosynthesis
Rpdx1_4655	PWY-5344	L-homocysteine biosynthesis
Rpdx1_4656	PWY-3461	L-tyrosine biosynthesis II
Rpdx1_4656	PWY-3462	L-phenylalanine biosynthesis II
Rpdx1_4656	PWY-6120	L-tyrosine biosynthesis III
Rpdx1_4656	PWY-6627	salinosporamide A biosynthesis
Rpdx1_4679	PWY-6825	phosphatidylcholine biosynthesis V
Rpdx1_4698	PWY-6605	adenine and adenosine salvage II
Rpdx1_4698	PWY-6610	adenine and adenosine salvage IV
Rpdx1_4699	PWY-5958	acridone alkaloid biosynthesis
Rpdx1_4699	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Rpdx1_4699	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Rpdx1_4736	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Rpdx1_4736	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Rpdx1_4744	PWY-6654	phosphopantothenate biosynthesis III
Rpdx1_4748	PWY-5482	pyruvate fermentation to acetate II
Rpdx1_4748	PWY-5485	pyruvate fermentation to acetate IV
Rpdx1_4748	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_4749	PWY-1281	sulfoacetaldehyde degradation I
Rpdx1_4749	PWY-5482	pyruvate fermentation to acetate II
Rpdx1_4749	PWY-5485	pyruvate fermentation to acetate IV
Rpdx1_4749	PWY-5497	purine nucleobases degradation II (anaerobic)
Rpdx1_4749	PWY-6637	sulfolactate degradation II
Rpdx1_4750	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Rpdx1_4750	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Rpdx1_4750	PWY-5989	stearate biosynthesis II (bacteria and plants)
Rpdx1_4750	PWY-6113	superpathway of mycolate biosynthesis
Rpdx1_4750	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Rpdx1_4750	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Rpdx1_4750	PWY-7096	triclosan resistance
Rpdx1_4750	PWYG-321	mycolate biosynthesis
Rpdx1_4766	PWY-3821	galactose degradation III
Rpdx1_4766	PWY-6317	galactose degradation I (Leloir pathway)
Rpdx1_4766	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Rpdx1_4766	PWY-6527	stachyose degradation
Rpdx1_4766	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Rpdx1_4766	PWY-7344	UDP-D-galactose biosynthesis
Rpdx1_4777	PWY-5692	allantoin degradation to glyoxylate II
Rpdx1_4777	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Rpdx1_4785	PWY-3081	L-lysine biosynthesis V
Rpdx1_4785	PWY-6871	3-methylbutanol biosynthesis
Rpdx1_4786	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_4786	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_4786	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_4786	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Rpdx1_4808	PWY-6823	molybdenum cofactor biosynthesis
Rpdx1_4819	PWY-5532	adenosine nucleotides degradation IV
Rpdx1_4819	PWY-5723	Rubisco shunt
Rpdx1_4820	PWY-1042	glycolysis IV (plant cytosol)
Rpdx1_4820	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_4820	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_4820	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Rpdx1_4820	PWY-7385	1,3-propanediol biosynthesis (engineered)
Rpdx1_4821	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Rpdx1_4821	PWY-5723	Rubisco shunt
Rpdx1_4821	PWY-6891	thiazole biosynthesis II (Bacillus)
Rpdx1_4821	PWY-6892	thiazole biosynthesis I (E. coli)
Rpdx1_4821	PWY-6901	superpathway of glucose and xylose degradation
Rpdx1_4821	PWY-7560	methylerythritol phosphate pathway II
Rpdx1_4822	PWY-5723	Rubisco shunt
Rpdx1_4823	PWY-5484	glycolysis II (from fructose 6-phosphate)
Rpdx1_4861	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Rpdx1_4876	PWY-6216	3-chlorobenzoate degradation II (via protocatechuate)
Rpdx1_4876	PWY-6217	3,4-dichlorobenzoate degradation
Rpdx1_4883	PWY-723	alkylnitronates degradation
Rpdx1_4900	PWY-5686	UMP biosynthesis
Rpdx1_4903	PWY-5941	glycogen degradation II (eukaryotic)
Rpdx1_4903	PWY-622	starch biosynthesis
Rpdx1_4903	PWY-6731	starch degradation III
Rpdx1_4903	PWY-6737	starch degradation V
Rpdx1_4903	PWY-7238	sucrose biosynthesis II
Rpdx1_4905	PWY-31	canavanine degradation
Rpdx1_4905	PWY-4984	urea cycle
Rpdx1_4905	PWY-6305	putrescine biosynthesis IV
Rpdx1_4905	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Rpdx1_4917	PWY-2941	L-lysine biosynthesis II
Rpdx1_4917	PWY-2942	L-lysine biosynthesis III
Rpdx1_4917	PWY-5097	L-lysine biosynthesis VI
Rpdx1_4919	PWY-4983	L-citrulline-nitric oxide cycle
Rpdx1_4919	PWY-4984	urea cycle
Rpdx1_4919	PWY-5	canavanine biosynthesis
Rpdx1_4919	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Rpdx1_4919	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_4925	PWY-1361	benzoyl-CoA degradation I (aerobic)
Rpdx1_4925	PWY-5109	2-methylbutanoate biosynthesis
Rpdx1_4925	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Rpdx1_4925	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Rpdx1_4925	PWY-5177	glutaryl-CoA degradation
Rpdx1_4925	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Rpdx1_4925	PWY-6435	4-hydroxybenzoate biosynthesis V
Rpdx1_4925	PWY-6583	pyruvate fermentation to butanol I
Rpdx1_4925	PWY-6863	pyruvate fermentation to hexanol
Rpdx1_4925	PWY-6883	pyruvate fermentation to butanol II
Rpdx1_4925	PWY-6944	androstenedione degradation
Rpdx1_4925	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Rpdx1_4925	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Rpdx1_4925	PWY-7007	methyl ketone biosynthesis
Rpdx1_4925	PWY-7046	4-coumarate degradation (anaerobic)
Rpdx1_4925	PWY-7094	fatty acid salvage
Rpdx1_4925	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Rpdx1_4925	PWY-735	jasmonic acid biosynthesis
Rpdx1_4925	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Rpdx1_4928	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Rpdx1_4928	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Rpdx1_4928	PWY-6268	adenosylcobalamin salvage from cobalamin
Rpdx1_4928	PWY-6269	adenosylcobalamin salvage from cobinamide II
Rpdx1_4948	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Rpdx1_4961	PWY-4981	L-proline biosynthesis II (from arginine)
Rpdx1_4961	PWY-4984	urea cycle
Rpdx1_4961	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Rpdx1_4976	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Rpdx1_5007	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Rpdx1_5007	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II