Rpal_0019 PWY-3781 aerobic respiration I (cytochrome c) Rpal_0019 PWY-4521 arsenite oxidation I (respiratory) Rpal_0019 PWY-6692 Fe(II) oxidation Rpal_0019 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_0020 PWY-3781 aerobic respiration I (cytochrome c) Rpal_0020 PWY-4521 arsenite oxidation I (respiratory) Rpal_0020 PWY-6692 Fe(II) oxidation Rpal_0020 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_0021 PWY-6654 phosphopantothenate biosynthesis III Rpal_0026 PWY-4041 γ-glutamyl cycle Rpal_0026 PWY-5826 hypoglycin biosynthesis Rpal_0028 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Rpal_0028 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Rpal_0028 PWY-6164 3-dehydroquinate biosynthesis I Rpal_0029 PWY-6123 inosine-5'-phosphate biosynthesis I Rpal_0029 PWY-6124 inosine-5'-phosphate biosynthesis II Rpal_0029 PWY-7234 inosine-5'-phosphate biosynthesis III Rpal_0064 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_0066 PWY-7205 CMP phosphorylation Rpal_0074 PWY-4381 fatty acid biosynthesis initiation I Rpal_0074 PWY-5743 3-hydroxypropanoate cycle Rpal_0074 PWY-5744 glyoxylate assimilation Rpal_0074 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_0074 PWY-6679 jadomycin biosynthesis Rpal_0074 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_0075 PWY-2161 folate polyglutamylation Rpal_0083 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_0083 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_0083 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_0083 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Rpal_0086 PWY-5839 menaquinol-7 biosynthesis Rpal_0086 PWY-5844 menaquinol-9 biosynthesis Rpal_0086 PWY-5849 menaquinol-6 biosynthesis Rpal_0086 PWY-5890 menaquinol-10 biosynthesis Rpal_0086 PWY-5891 menaquinol-11 biosynthesis Rpal_0086 PWY-5892 menaquinol-12 biosynthesis Rpal_0086 PWY-5895 menaquinol-13 biosynthesis Rpal_0120 PWY-3221 dTDP-L-rhamnose biosynthesis II Rpal_0120 PWY-6808 dTDP-D-forosamine biosynthesis Rpal_0120 PWY-6942 dTDP-D-desosamine biosynthesis Rpal_0120 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Rpal_0120 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Rpal_0120 PWY-6974 dTDP-L-olivose biosynthesis Rpal_0120 PWY-6976 dTDP-L-mycarose biosynthesis Rpal_0120 PWY-7104 dTDP-L-megosamine biosynthesis Rpal_0120 PWY-7301 dTDP-β-L-noviose biosynthesis Rpal_0120 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Rpal_0120 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Rpal_0120 PWY-7316 dTDP-N-acetylviosamine biosynthesis Rpal_0120 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Rpal_0120 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Rpal_0120 PWY-7414 dTDP-α-D-mycaminose biosynthesis Rpal_0120 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Rpal_0123 PWY-3221 dTDP-L-rhamnose biosynthesis II Rpal_0123 PWY-6808 dTDP-D-forosamine biosynthesis Rpal_0123 PWY-6942 dTDP-D-desosamine biosynthesis Rpal_0123 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Rpal_0123 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Rpal_0123 PWY-6974 dTDP-L-olivose biosynthesis Rpal_0123 PWY-6976 dTDP-L-mycarose biosynthesis Rpal_0123 PWY-7104 dTDP-L-megosamine biosynthesis Rpal_0123 PWY-7301 dTDP-β-L-noviose biosynthesis Rpal_0123 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Rpal_0123 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Rpal_0123 PWY-7316 dTDP-N-acetylviosamine biosynthesis Rpal_0123 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Rpal_0123 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Rpal_0123 PWY-7414 dTDP-α-D-mycaminose biosynthesis Rpal_0123 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Rpal_0160 PWY-5381 pyridine nucleotide cycling (plants) Rpal_0160 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Rpal_0171 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_0173 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_0180 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Rpal_0180 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Rpal_0183 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Rpal_0184 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Rpal_0185 PWY-5392 reductive TCA cycle II Rpal_0185 PWY-5537 pyruvate fermentation to acetate V Rpal_0185 PWY-5538 pyruvate fermentation to acetate VI Rpal_0185 PWY-5690 TCA cycle II (plants and fungi) Rpal_0185 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_0185 PWY-6728 methylaspartate cycle Rpal_0185 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_0185 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_0186 PWY-5392 reductive TCA cycle II Rpal_0186 PWY-5537 pyruvate fermentation to acetate V Rpal_0186 PWY-5538 pyruvate fermentation to acetate VI Rpal_0186 PWY-5690 TCA cycle II (plants and fungi) Rpal_0186 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_0186 PWY-6728 methylaspartate cycle Rpal_0186 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_0186 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_0187 PWY-1622 formaldehyde assimilation I (serine pathway) Rpal_0187 PWY-5392 reductive TCA cycle II Rpal_0187 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_0187 PWY-5690 TCA cycle II (plants and fungi) Rpal_0187 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_0187 PWY-6728 methylaspartate cycle Rpal_0187 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_0187 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_0187 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_0209 PWY-6672 cis-genanyl-CoA degradation Rpal_0209 PWY-7118 chitin degradation to ethanol Rpal_0214 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_0214 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_0215 PWY-3781 aerobic respiration I (cytochrome c) Rpal_0215 PWY-4302 aerobic respiration III (alternative oxidase pathway) Rpal_0215 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_0215 PWY-5690 TCA cycle II (plants and fungi) Rpal_0215 PWY-6728 methylaspartate cycle Rpal_0215 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_0215 PWY-7254 TCA cycle VII (acetate-producers) Rpal_0215 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_0216 PWY-3781 aerobic respiration I (cytochrome c) Rpal_0216 PWY-4302 aerobic respiration III (alternative oxidase pathway) Rpal_0216 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_0216 PWY-5690 TCA cycle II (plants and fungi) Rpal_0216 PWY-6728 methylaspartate cycle Rpal_0216 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_0216 PWY-7254 TCA cycle VII (acetate-producers) Rpal_0216 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_0224 PWY-6854 ethylene biosynthesis III (microbes) Rpal_0226 PWY-7396 butanol and isobutanol biosynthesis (engineered) Rpal_0229 PWY-2941 L-lysine biosynthesis II Rpal_0229 PWY-2942 L-lysine biosynthesis III Rpal_0229 PWY-5097 L-lysine biosynthesis VI Rpal_0229 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_0229 PWY-6559 spermidine biosynthesis II Rpal_0229 PWY-6562 norspermidine biosynthesis Rpal_0229 PWY-7153 grixazone biosynthesis Rpal_0229 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_0231 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_0231 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_0231 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_0231 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_0243 PWY-6829 tRNA methylation (yeast) Rpal_0243 PWY-7285 methylwyosine biosynthesis Rpal_0243 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Rpal_0251 PWY-2941 L-lysine biosynthesis II Rpal_0251 PWY-5097 L-lysine biosynthesis VI Rpal_0255 PWY-5667 CDP-diacylglycerol biosynthesis I Rpal_0255 PWY-5981 CDP-diacylglycerol biosynthesis III Rpal_0257 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_0257 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_0263 PWY-5532 adenosine nucleotides degradation IV Rpal_0263 PWY-5723 Rubisco shunt Rpal_0288 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_0298 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_0317 PWY-3961 phosphopantothenate biosynthesis II Rpal_0322 PWY-6157 autoinducer AI-1 biosynthesis Rpal_0331 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Rpal_0340 PWY-5686 UMP biosynthesis Rpal_0342 PWY-2941 L-lysine biosynthesis II Rpal_0342 PWY-2942 L-lysine biosynthesis III Rpal_0342 PWY-5097 L-lysine biosynthesis VI Rpal_0343 PWY-1042 glycolysis IV (plant cytosol) Rpal_0343 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Rpal_0343 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_0343 PWY-5723 Rubisco shunt Rpal_0343 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_0343 PWY-6886 1-butanol autotrophic biosynthesis Rpal_0343 PWY-6901 superpathway of glucose and xylose degradation Rpal_0343 PWY-7003 glycerol degradation to butanol Rpal_0343 PWY-7124 ethylene biosynthesis V (engineered) Rpal_0343 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Rpal_0348 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_0348 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_0363 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_0363 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_0378 PWY-3162 L-tryptophan degradation V (side chain pathway) Rpal_0378 PWY-5057 L-valine degradation II Rpal_0378 PWY-5076 L-leucine degradation III Rpal_0378 PWY-5078 L-isoleucine degradation II Rpal_0378 PWY-5079 L-phenylalanine degradation III Rpal_0378 PWY-5082 L-methionine degradation III Rpal_0378 PWY-5480 pyruvate fermentation to ethanol I Rpal_0378 PWY-5486 pyruvate fermentation to ethanol II Rpal_0378 PWY-5751 phenylethanol biosynthesis Rpal_0378 PWY-6028 acetoin degradation Rpal_0378 PWY-6313 serotonin degradation Rpal_0378 PWY-6333 acetaldehyde biosynthesis I Rpal_0378 PWY-6342 noradrenaline and adrenaline degradation Rpal_0378 PWY-6587 pyruvate fermentation to ethanol III Rpal_0378 PWY-6802 salidroside biosynthesis Rpal_0378 PWY-6871 3-methylbutanol biosynthesis Rpal_0378 PWY-7013 L-1,2-propanediol degradation Rpal_0378 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_0378 PWY-7118 chitin degradation to ethanol Rpal_0378 PWY-7396 butanol and isobutanol biosynthesis (engineered) Rpal_0378 PWY-7557 dehydrodiconiferyl alcohol degradation Rpal_0385 PWY-622 starch biosynthesis Rpal_0386 PWY-622 starch biosynthesis Rpal_0396 PWY-5491 diethylphosphate degradation Rpal_0397 PWY-4983 L-citrulline-nitric oxide cycle Rpal_0397 PWY-4984 urea cycle Rpal_0397 PWY-5 canavanine biosynthesis Rpal_0397 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_0397 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_0408 PWY-7158 L-phenylalanine degradation V Rpal_0417 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate Rpal_0417 PWY-2201 folate transformations I Rpal_0417 PWY-3841 folate transformations II Rpal_0417 PWY-5030 L-histidine degradation III Rpal_0417 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_0417 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Rpal_0429 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_0429 PWY-5973 cis-vaccenate biosynthesis Rpal_0429 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_0429 PWY-5994 palmitate biosynthesis I (animals and fungi) Rpal_0429 PWY-6113 superpathway of mycolate biosynthesis Rpal_0429 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_0429 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_0429 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_0429 PWYG-321 mycolate biosynthesis Rpal_0431 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_0431 PWY-5973 cis-vaccenate biosynthesis Rpal_0431 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_0431 PWY-6113 superpathway of mycolate biosynthesis Rpal_0431 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_0431 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_0431 PWY-7096 triclosan resistance Rpal_0431 PWYG-321 mycolate biosynthesis Rpal_0472 PWY-6167 flavin biosynthesis II (archaea) Rpal_0497 PWY-7376 cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) Rpal_0499 PWY-7376 cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) Rpal_0504 PWY-6164 3-dehydroquinate biosynthesis I Rpal_0505 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_0509 PWY-4381 fatty acid biosynthesis initiation I Rpal_0509 PWY-5743 3-hydroxypropanoate cycle Rpal_0509 PWY-5744 glyoxylate assimilation Rpal_0509 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_0509 PWY-6679 jadomycin biosynthesis Rpal_0509 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_0514 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_0514 PWY-2361 3-oxoadipate degradation Rpal_0514 PWY-6185 4-methylcatechol degradation (ortho cleavage) Rpal_0520 PWY-7560 methylerythritol phosphate pathway II Rpal_0533 PWY-5676 acetyl-CoA fermentation to butanoate II Rpal_0533 PWY-5741 ethylmalonyl-CoA pathway Rpal_0533 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Rpal_0555 PWY-5692 allantoin degradation to glyoxylate II Rpal_0555 PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) Rpal_0556 PWY-5694 allantoin degradation to glyoxylate I Rpal_0556 PWY-5705 allantoin degradation to glyoxylate III Rpal_0559 PWY-6936 seleno-amino acid biosynthesis Rpal_0560 PWY-6123 inosine-5'-phosphate biosynthesis I Rpal_0560 PWY-6124 inosine-5'-phosphate biosynthesis II Rpal_0560 PWY-7234 inosine-5'-phosphate biosynthesis III Rpal_0595 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_0607 PWY-5855 ubiquinol-7 biosynthesis (prokaryotic) Rpal_0607 PWY-5856 ubiquinol-9 biosynthesis (prokaryotic) Rpal_0607 PWY-5857 ubiquinol-10 biosynthesis (prokaryotic) Rpal_0607 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic) Rpal_0607 PWY-5871 ubiquinol-9 biosynthesis (eukaryotic) Rpal_0607 PWY-5872 ubiquinol-10 biosynthesis (eukaryotic) Rpal_0607 PWY-5873 ubiquinol-7 biosynthesis (eukaryotic) Rpal_0607 PWY-6708 ubiquinol-8 biosynthesis (prokaryotic) Rpal_0607 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Rpal_0607 PWY-7233 ubiquinol-6 bypass biosynthesis (eukaryotic) Rpal_0608 PWY-2941 L-lysine biosynthesis II Rpal_0608 PWY-2942 L-lysine biosynthesis III Rpal_0608 PWY-5097 L-lysine biosynthesis VI Rpal_0608 PWY-6559 spermidine biosynthesis II Rpal_0608 PWY-6562 norspermidine biosynthesis Rpal_0608 PWY-7153 grixazone biosynthesis Rpal_0614 PWY-5386 methylglyoxal degradation I Rpal_0617 PWY-5381 pyridine nucleotide cycling (plants) Rpal_0633 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_0633 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_0720 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Rpal_0720 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Rpal_0737 PWY-6080 4-ethylphenol degradation (anaerobic) Rpal_0737 PWY-7046 4-coumarate degradation (anaerobic) Rpal_0738 PWY-6080 4-ethylphenol degradation (anaerobic) Rpal_0738 PWY-7046 4-coumarate degradation (anaerobic) Rpal_0739 PWY-6080 4-ethylphenol degradation (anaerobic) Rpal_0739 PWY-7046 4-coumarate degradation (anaerobic) Rpal_0743 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_0744 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_0745 PWY-101 photosynthesis light reactions Rpal_0745 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Rpal_0754 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_0754 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_0755 PWY-5532 adenosine nucleotides degradation IV Rpal_0756 PWY-7399 methylphosphonate degradation II Rpal_0757 PWY-7399 methylphosphonate degradation II Rpal_0759 PWY-7399 methylphosphonate degradation II Rpal_0762 PWY-7399 methylphosphonate degradation II Rpal_0770 PWY-7399 methylphosphonate degradation II Rpal_0771 PWY-5532 adenosine nucleotides degradation IV Rpal_0782 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_0782 PWY-5523 5,6-dimethylbenzimidazole biosynthesis Rpal_0783 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_0783 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_0783 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_0785 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_0785 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_0785 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_0788 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_0788 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_0788 PWY-6268 adenosylcobalamin salvage from cobalamin Rpal_0788 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_0792 PWY-5443 aminopropanol phosphate biosynthesis I Rpal_0805 PWY-1881 formate oxidation to CO2 Rpal_0805 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_0805 PWY-6696 oxalate degradation III Rpal_0824 PWY-5340 sulfate activation for sulfonation Rpal_0827 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_0844 PWY-4041 γ-glutamyl cycle Rpal_0844 PWY-5826 hypoglycin biosynthesis Rpal_0857 PWY-6832 2-aminoethylphosphonate degradation II Rpal_0862 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_0862 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_0862 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_0862 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_0865 PWY-5686 UMP biosynthesis Rpal_0867 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_0867 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_0867 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_0867 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_0887 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_0887 PWY-5109 2-methylbutanoate biosynthesis Rpal_0887 PWY-5136 fatty acid β-oxidation II (peroxisome) Rpal_0887 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Rpal_0887 PWY-5177 glutaryl-CoA degradation Rpal_0887 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_0887 PWY-6435 4-hydroxybenzoate biosynthesis V Rpal_0887 PWY-6583 pyruvate fermentation to butanol I Rpal_0887 PWY-6863 pyruvate fermentation to hexanol Rpal_0887 PWY-6883 pyruvate fermentation to butanol II Rpal_0887 PWY-6944 androstenedione degradation Rpal_0887 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Rpal_0887 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Rpal_0887 PWY-7007 methyl ketone biosynthesis Rpal_0887 PWY-7046 4-coumarate degradation (anaerobic) Rpal_0887 PWY-7094 fatty acid salvage Rpal_0887 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Rpal_0887 PWY-735 jasmonic acid biosynthesis Rpal_0887 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Rpal_0890 PWY-6840 homoglutathione biosynthesis Rpal_0890 PWY-7255 ergothioneine biosynthesis I (bacteria) Rpal_0900 PWY-3781 aerobic respiration I (cytochrome c) Rpal_0900 PWY-4521 arsenite oxidation I (respiratory) Rpal_0900 PWY-6692 Fe(II) oxidation Rpal_0900 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_0922 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_0922 PWY-7536 2-amino-3-hydroxycyclopent-2-enone biosynthesis Rpal_0955 PWY-3801 sucrose degradation II (sucrose synthase) Rpal_0955 PWY-6527 stachyose degradation Rpal_0955 PWY-6981 chitin biosynthesis Rpal_0955 PWY-7238 sucrose biosynthesis II Rpal_0955 PWY-7343 UDP-glucose biosynthesis Rpal_0966 PWY-2941 L-lysine biosynthesis II Rpal_0966 PWY-2942 L-lysine biosynthesis III Rpal_0966 PWY-5097 L-lysine biosynthesis VI Rpal_0979 PWY-6785 hydrogen production VIII Rpal_1007 PWY-2301 myo-inositol biosynthesis Rpal_1007 PWY-4702 phytate degradation I Rpal_1007 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation Rpal_1009 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Rpal_1009 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Rpal_1009 PWY-6897 thiamin salvage II Rpal_1009 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Rpal_1009 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Rpal_1009 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Rpal_1009 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Rpal_1010 PWY-1042 glycolysis IV (plant cytosol) Rpal_1010 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_1010 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_1010 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_1010 PWY-7385 1,3-propanediol biosynthesis (engineered) Rpal_1013 PWY-1042 glycolysis IV (plant cytosol) Rpal_1013 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_1013 PWY-6886 1-butanol autotrophic biosynthesis Rpal_1013 PWY-6901 superpathway of glucose and xylose degradation Rpal_1013 PWY-7003 glycerol degradation to butanol Rpal_1014 PWY-1042 glycolysis IV (plant cytosol) Rpal_1014 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_1014 PWY-6901 superpathway of glucose and xylose degradation Rpal_1014 PWY-7003 glycerol degradation to butanol Rpal_1015 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_1015 PWY-5723 Rubisco shunt Rpal_1015 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_1015 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_1015 PWY-6901 superpathway of glucose and xylose degradation Rpal_1015 PWY-7560 methylerythritol phosphate pathway II Rpal_1022 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_1022 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_1022 PWY-7560 methylerythritol phosphate pathway II Rpal_1050 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_1057 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_1176 PWY-381 nitrate reduction II (assimilatory) Rpal_1176 PWY-5675 nitrate reduction V (assimilatory) Rpal_1176 PWY-6549 L-glutamine biosynthesis III Rpal_1176 PWY-6963 ammonia assimilation cycle I Rpal_1176 PWY-6964 ammonia assimilation cycle II Rpal_1194 PWY-5381 pyridine nucleotide cycling (plants) Rpal_1208 PWY-3781 aerobic respiration I (cytochrome c) Rpal_1208 PWY-6692 Fe(II) oxidation Rpal_1208 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) Rpal_1208 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_1231 PWY-7560 methylerythritol phosphate pathway II Rpal_1243 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_1243 PWY-6549 L-glutamine biosynthesis III Rpal_1243 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_1243 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_1245 PWY-5316 nicotine biosynthesis Rpal_1245 PWY-5381 pyridine nucleotide cycling (plants) Rpal_1245 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Rpal_1245 PWY-7342 superpathway of nicotine biosynthesis Rpal_1246 PWY-5316 nicotine biosynthesis Rpal_1246 PWY-7342 superpathway of nicotine biosynthesis Rpal_1247 PWY-5316 nicotine biosynthesis Rpal_1247 PWY-7342 superpathway of nicotine biosynthesis Rpal_1257 PWY-5686 UMP biosynthesis Rpal_1266 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_1266 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_1283 PWY-6167 flavin biosynthesis II (archaea) Rpal_1283 PWY-6168 flavin biosynthesis III (fungi) Rpal_1283 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Rpal_1321 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_1321 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_1322 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_1322 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_1353 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_1353 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_1353 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_1359 PWY-6823 molybdenum cofactor biosynthesis Rpal_1361 PWY-5269 cardiolipin biosynthesis II Rpal_1361 PWY-5668 cardiolipin biosynthesis I Rpal_1382 PWY-6703 preQ0 biosynthesis Rpal_1384 PWY-3781 aerobic respiration I (cytochrome c) Rpal_1384 PWY-6692 Fe(II) oxidation Rpal_1384 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) Rpal_1384 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_1389 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_1389 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_1392 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_1392 PWY-5973 cis-vaccenate biosynthesis Rpal_1392 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_1392 PWY-6113 superpathway of mycolate biosynthesis Rpal_1392 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_1392 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_1392 PWY-7096 triclosan resistance Rpal_1392 PWYG-321 mycolate biosynthesis Rpal_1394 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_1422 PWY-1341 phenylacetate degradation II (anaerobic) Rpal_1422 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) Rpal_1450 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_1450 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_1450 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_1454 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_1454 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_1470 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_1470 PWY-5686 UMP biosynthesis Rpal_1470 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_1489 PWY-4381 fatty acid biosynthesis initiation I Rpal_1526 PWY-6698 oxalate degradation V Rpal_1545 PWY-5392 reductive TCA cycle II Rpal_1545 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_1545 PWY-5690 TCA cycle II (plants and fungi) Rpal_1545 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_1545 PWY-6728 methylaspartate cycle Rpal_1545 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_1545 PWY-7254 TCA cycle VII (acetate-producers) Rpal_1545 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_1548 PWY-7254 TCA cycle VII (acetate-producers) Rpal_1577 PWY-5274 sulfide oxidation II (sulfide dehydrogenase) Rpal_1586 PWY-723 alkylnitronates degradation Rpal_1587 PWY-5169 cyanurate degradation Rpal_1587 PWY-5703 urea degradation I Rpal_1587 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1588 PWY-5169 cyanurate degradation Rpal_1588 PWY-5703 urea degradation I Rpal_1608 PWY-6823 molybdenum cofactor biosynthesis Rpal_1608 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_1608 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_1608 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Rpal_1618 PWY-4041 γ-glutamyl cycle Rpal_1636 PWY-4381 fatty acid biosynthesis initiation I Rpal_1636 PWY-5743 3-hydroxypropanoate cycle Rpal_1636 PWY-5744 glyoxylate assimilation Rpal_1636 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_1636 PWY-6679 jadomycin biosynthesis Rpal_1636 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_1642 PWY-3781 aerobic respiration I (cytochrome c) Rpal_1642 PWY-4521 arsenite oxidation I (respiratory) Rpal_1642 PWY-6692 Fe(II) oxidation Rpal_1642 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_1648 PWY-5101 L-isoleucine biosynthesis II Rpal_1648 PWY-5103 L-isoleucine biosynthesis III Rpal_1648 PWY-5104 L-isoleucine biosynthesis IV Rpal_1648 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_1651 PWY-5169 cyanurate degradation Rpal_1651 PWY-5703 urea degradation I Rpal_1651 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1654 PWY-5169 cyanurate degradation Rpal_1654 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1671 PWY-2723 trehalose degradation V Rpal_1671 PWY-3801 sucrose degradation II (sucrose synthase) Rpal_1671 PWY-5384 sucrose degradation IV (sucrose phosphorylase) Rpal_1671 PWY-5661 GDP-glucose biosynthesis Rpal_1671 PWY-5661-1 Rpal_1671 Rpal_1671 PWY-5940 streptomycin biosynthesis Rpal_1671 PWY-5941 glycogen degradation II (eukaryotic) Rpal_1671 PWY-622 starch biosynthesis Rpal_1671 PWY-6731 starch degradation III Rpal_1671 PWY-6737 starch degradation V Rpal_1671 PWY-6749 CMP-legionaminate biosynthesis I Rpal_1671 PWY-7238 sucrose biosynthesis II Rpal_1671 PWY-7343 UDP-glucose biosynthesis Rpal_1692 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_1692 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_1693 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1693 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1694 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1694 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1696 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1696 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1698 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1698 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1701 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1701 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1710 PWY-5526 bacteriochlorophyll a biosynthesis Rpal_1711 PWY-5526 bacteriochlorophyll a biosynthesis Rpal_1711 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1711 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1712 PWY-5526 bacteriochlorophyll a biosynthesis Rpal_1712 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1712 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1716 PWY-101 photosynthesis light reactions Rpal_1716 PWY-6785 hydrogen production VIII Rpal_1717 PWY-101 photosynthesis light reactions Rpal_1717 PWY-6785 hydrogen production VIII Rpal_1727 PWY-5874 heme degradation Rpal_1727 PWY-5915 phycoerythrobilin biosynthesis I Rpal_1727 PWY-5917 phycocyanobilin biosynthesis Rpal_1727 PWY-7170 phytochromobilin biosynthesis Rpal_1730 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1730 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1731 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1731 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1732 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1732 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1733 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1733 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1734 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Rpal_1734 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Rpal_1742 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_1742 PWY-7536 2-amino-3-hydroxycyclopent-2-enone biosynthesis Rpal_1747 PWY-5532 adenosine nucleotides degradation IV Rpal_1747 PWY-5723 Rubisco shunt Rpal_1748 PWY-5532 adenosine nucleotides degradation IV Rpal_1748 PWY-5723 Rubisco shunt Rpal_1757 PWY-5344 L-homocysteine biosynthesis Rpal_1757 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_1768 PWY-5737 (5R)-carbapenem carboxylate biosynthesis Rpal_1768 PWY-6853 ethylene biosynthesis II (microbes) Rpal_1768 PWY-6922 L-Nδ-acetylornithine biosynthesis Rpal_1780 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_1780 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_1786 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_1786 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_1786 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_1823 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_1882 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) Rpal_1882 PWY-7494 choline degradation IV Rpal_1890 PWY-6854 ethylene biosynthesis III (microbes) Rpal_1894 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_1894 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_1900 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1920 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_1920 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_1923 PWY-1341 phenylacetate degradation II (anaerobic) Rpal_1923 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) Rpal_1934 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1936 PWY-3121 linamarin degradation Rpal_1936 PWY-5176 coumarin biosynthesis (via 2-coumarate) Rpal_1936 PWY-6002 lotaustralin degradation Rpal_1936 PWY-6788 cellulose degradation II (fungi) Rpal_1936 PWY-7089 taxiphyllin bioactivation Rpal_1936 PWY-7091 linustatin bioactivation Rpal_1936 PWY-7092 neolinustatin bioactivation Rpal_1972 PWY-1622 formaldehyde assimilation I (serine pathway) Rpal_1972 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_1972 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_1972 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_1972 PWY-6146 Methanobacterium thermoautotrophicum biosynthetic metabolism Rpal_1972 PWY-6549 L-glutamine biosynthesis III Rpal_1972 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_1972 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_1972 PWY-7124 ethylene biosynthesis V (engineered) Rpal_1980 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_1983 PWY-6215 4-chlorobenzoate degradation Rpal_2034 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_2034 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_2034 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_2034 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_2035 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_2035 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_2035 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Rpal_2035 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_2039 PWY-5743 3-hydroxypropanoate cycle Rpal_2039 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_2039 PWY-6728 methylaspartate cycle Rpal_2039 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_2040 PWY-1801 formaldehyde oxidation II (glutathione-dependent) Rpal_2041 PWY-5743 3-hydroxypropanoate cycle Rpal_2041 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_2041 PWY-6728 methylaspartate cycle Rpal_2041 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_2042 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Rpal_2042 PWY-6148 tetrahydromethanopterin biosynthesis Rpal_2042 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Rpal_2042 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Rpal_2043 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Rpal_2043 PWY-6148 tetrahydromethanopterin biosynthesis Rpal_2043 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Rpal_2043 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Rpal_2044 PWY-6614 tetrahydrofolate biosynthesis Rpal_2117 PWY-1801 formaldehyde oxidation II (glutathione-dependent) Rpal_2134 PWY-7142 cyanide detoxification II Rpal_2151 PWY-723 alkylnitronates degradation Rpal_2153 PWY-6654 phosphopantothenate biosynthesis III Rpal_2155 PWY-6695 oxalate degradation II Rpal_2159 PWY-6420 pyrroloquinoline quinone biosynthesis Rpal_2161 PWY-6823 molybdenum cofactor biosynthesis Rpal_2166 PWY-1801 formaldehyde oxidation II (glutathione-dependent) Rpal_2166 PWY-3162 L-tryptophan degradation V (side chain pathway) Rpal_2166 PWY-5057 L-valine degradation II Rpal_2166 PWY-5076 L-leucine degradation III Rpal_2166 PWY-5078 L-isoleucine degradation II Rpal_2166 PWY-5079 L-phenylalanine degradation III Rpal_2166 PWY-5082 L-methionine degradation III Rpal_2166 PWY-5480 pyruvate fermentation to ethanol I Rpal_2166 PWY-5486 pyruvate fermentation to ethanol II Rpal_2166 PWY-5751 phenylethanol biosynthesis Rpal_2166 PWY-6028 acetoin degradation Rpal_2166 PWY-6313 serotonin degradation Rpal_2166 PWY-6333 acetaldehyde biosynthesis I Rpal_2166 PWY-6342 noradrenaline and adrenaline degradation Rpal_2166 PWY-6587 pyruvate fermentation to ethanol III Rpal_2166 PWY-6802 salidroside biosynthesis Rpal_2166 PWY-6871 3-methylbutanol biosynthesis Rpal_2166 PWY-7013 L-1,2-propanediol degradation Rpal_2166 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2166 PWY-7118 chitin degradation to ethanol Rpal_2166 PWY-7396 butanol and isobutanol biosynthesis (engineered) Rpal_2166 PWY-7557 dehydrodiconiferyl alcohol degradation Rpal_2191 PWY-6823 molybdenum cofactor biosynthesis Rpal_2193 PWY-181 photorespiration Rpal_2194 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_2194 PWY-5723 Rubisco shunt Rpal_2196 PWY-4081 glutathione redox reactions I Rpal_2197 PWY-6164 3-dehydroquinate biosynthesis I Rpal_2198 PWY-7039 phosphatidate metabolism, as a signaling molecule Rpal_2211 PWY-5101 L-isoleucine biosynthesis II Rpal_2211 PWY-6871 3-methylbutanol biosynthesis Rpal_2213 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_2213 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_2217 PWY-5669 phosphatidylethanolamine biosynthesis I Rpal_2218 PWY-5669 phosphatidylethanolamine biosynthesis I Rpal_2232 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_2232 PWY-5973 cis-vaccenate biosynthesis Rpal_2232 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_2232 PWY-5994 palmitate biosynthesis I (animals and fungi) Rpal_2232 PWY-6113 superpathway of mycolate biosynthesis Rpal_2232 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_2232 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_2232 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_2232 PWYG-321 mycolate biosynthesis Rpal_2241 PWY-2781 cis-zeatin biosynthesis Rpal_2242 PWY-5101 L-isoleucine biosynthesis II Rpal_2242 PWY-5103 L-isoleucine biosynthesis III Rpal_2242 PWY-5104 L-isoleucine biosynthesis IV Rpal_2242 PWY-5938 (R)-acetoin biosynthesis I Rpal_2242 PWY-5939 (R)-acetoin biosynthesis II Rpal_2242 PWY-6389 (S)-acetoin biosynthesis Rpal_2242 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2243 PWY-5101 L-isoleucine biosynthesis II Rpal_2243 PWY-5103 L-isoleucine biosynthesis III Rpal_2243 PWY-5104 L-isoleucine biosynthesis IV Rpal_2243 PWY-5938 (R)-acetoin biosynthesis I Rpal_2243 PWY-5939 (R)-acetoin biosynthesis II Rpal_2243 PWY-6389 (S)-acetoin biosynthesis Rpal_2243 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2246 PWY-5101 L-isoleucine biosynthesis II Rpal_2246 PWY-5103 L-isoleucine biosynthesis III Rpal_2246 PWY-5104 L-isoleucine biosynthesis IV Rpal_2246 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2257 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Rpal_2259 PWY-6871 3-methylbutanol biosynthesis Rpal_2331 PWY-6157 autoinducer AI-1 biosynthesis Rpal_2351 PWY-6748 nitrate reduction VII (denitrification) Rpal_2351 PWY-7084 nitrifier denitrification Rpal_2372 PWY-5194 siroheme biosynthesis Rpal_2372 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Rpal_2374 PWY-5194 siroheme biosynthesis Rpal_2374 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Rpal_2376 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Rpal_2379 PWY-5194 siroheme biosynthesis Rpal_2379 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Rpal_2384 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_2384 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_2384 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_2385 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_2385 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_2385 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_2387 PWY-7376 cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) Rpal_2435 PWY-4381 fatty acid biosynthesis initiation I Rpal_2435 PWY-5743 3-hydroxypropanoate cycle Rpal_2435 PWY-5744 glyoxylate assimilation Rpal_2435 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_2435 PWY-6679 jadomycin biosynthesis Rpal_2435 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_2448 PWY-5101 L-isoleucine biosynthesis II Rpal_2448 PWY-5103 L-isoleucine biosynthesis III Rpal_2448 PWY-5104 L-isoleucine biosynthesis IV Rpal_2448 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2462 PWY-5532 adenosine nucleotides degradation IV Rpal_2462 PWY-5723 Rubisco shunt Rpal_2475 PWY-5041 S-adenosyl-L-methionine cycle II Rpal_2475 PWY-6151 S-adenosyl-L-methionine cycle I Rpal_2475 PWY-6936 seleno-amino acid biosynthesis Rpal_2475 PWY-702 L-methionine biosynthesis II Rpal_2495 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Rpal_2495 PWY-6596 adenosine nucleotides degradation I Rpal_2495 PWY-7221 guanosine ribonucleotides de novo biosynthesis Rpal_2498 PWY-7221 guanosine ribonucleotides de novo biosynthesis Rpal_2500 PWY-7221 guanosine ribonucleotides de novo biosynthesis Rpal_2513 PWY-1042 glycolysis IV (plant cytosol) Rpal_2513 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Rpal_2513 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_2513 PWY-5723 Rubisco shunt Rpal_2513 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_2513 PWY-6886 1-butanol autotrophic biosynthesis Rpal_2513 PWY-6901 superpathway of glucose and xylose degradation Rpal_2513 PWY-7003 glycerol degradation to butanol Rpal_2513 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Rpal_2513 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_2575 PWY-4041 γ-glutamyl cycle Rpal_2575 PWY-5826 hypoglycin biosynthesis Rpal_2585 PWY-5101 L-isoleucine biosynthesis II Rpal_2585 PWY-5103 L-isoleucine biosynthesis III Rpal_2585 PWY-5104 L-isoleucine biosynthesis IV Rpal_2585 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_2593 PWY-5344 L-homocysteine biosynthesis Rpal_2593 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_2594 PWY-5344 L-homocysteine biosynthesis Rpal_2594 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_2596 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Rpal_2596 PWY-5389 3-methylthiopropanoate biosynthesis Rpal_2598 PWY-6823 molybdenum cofactor biosynthesis Rpal_2606 PWY-5344 L-homocysteine biosynthesis Rpal_2606 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_2638 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_2638 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_2638 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_2638 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_2638 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Rpal_2638 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Rpal_2638 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Rpal_2638 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Rpal_2639 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_2639 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_2639 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_2639 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_2639 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Rpal_2639 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Rpal_2639 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Rpal_2639 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Rpal_2642 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_2642 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Rpal_2642 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Rpal_2648 PWY-5747 2-methylcitrate cycle II Rpal_2650 PWY-5041 S-adenosyl-L-methionine cycle II Rpal_2650 PWY-6151 S-adenosyl-L-methionine cycle I Rpal_2650 PWY-6936 seleno-amino acid biosynthesis Rpal_2650 PWY-702 L-methionine biosynthesis II Rpal_2683 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) Rpal_2683 PWY-7494 choline degradation IV Rpal_2715 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_2715 PWY-6416 quinate degradation II Rpal_2715 PWY-6707 gallate biosynthesis Rpal_2741 PWY-6823 molybdenum cofactor biosynthesis Rpal_2741 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_2741 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_2741 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Rpal_2745 PWY-6823 molybdenum cofactor biosynthesis Rpal_2745 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_2745 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_2745 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Rpal_2770 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_2770 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_2779 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_2784 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_2786 PWY-7425 2-chloroacrylate degradation I Rpal_2791 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Rpal_2791 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Rpal_2791 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Rpal_2808 PWY-4381 fatty acid biosynthesis initiation I Rpal_2808 PWY-5743 3-hydroxypropanoate cycle Rpal_2808 PWY-5744 glyoxylate assimilation Rpal_2808 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_2808 PWY-6679 jadomycin biosynthesis Rpal_2808 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_2831 PWY-6936 seleno-amino acid biosynthesis Rpal_2857 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Rpal_2857 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Rpal_2857 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) Rpal_2860 PWY-7560 methylerythritol phosphate pathway II Rpal_2875 PWY-6700 queuosine biosynthesis Rpal_2876 PWY-6700 queuosine biosynthesis Rpal_2890 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) Rpal_2890 PWY-7494 choline degradation IV Rpal_2906 PWY-6823 molybdenum cofactor biosynthesis Rpal_2933 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Rpal_2934 PWY-6749 CMP-legionaminate biosynthesis I Rpal_2947 PWY-6826 phosphatidylcholine biosynthesis VI Rpal_2961 PWY-2941 L-lysine biosynthesis II Rpal_2961 PWY-2942 L-lysine biosynthesis III Rpal_2961 PWY-5097 L-lysine biosynthesis VI Rpal_2970 PWY-6012 acyl carrier protein metabolism I Rpal_2970 PWY-6012-1 acyl carrier protein metabolism II (mammalian) Rpal_2988 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_2988 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_3004 PWY-1622 formaldehyde assimilation I (serine pathway) Rpal_3004 PWY-181 photorespiration Rpal_3004 PWY-2161 folate polyglutamylation Rpal_3004 PWY-2201 folate transformations I Rpal_3004 PWY-3661 glycine betaine degradation I Rpal_3004 PWY-3661-1 glycine betaine degradation II (mammalian) Rpal_3004 PWY-3841 folate transformations II Rpal_3004 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_3007 PWY-6167 flavin biosynthesis II (archaea) Rpal_3007 PWY-6168 flavin biosynthesis III (fungi) Rpal_3007 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_3008 PWY-6167 flavin biosynthesis II (archaea) Rpal_3008 PWY-6168 flavin biosynthesis III (fungi) Rpal_3011 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Rpal_3011 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Rpal_3011 PWY-6896 thiamin salvage I Rpal_3011 PWY-6897 thiamin salvage II Rpal_3020 PWY-4381 fatty acid biosynthesis initiation I Rpal_3089 PWY-6655 xanthan biosynthesis Rpal_3089 PWY-6658 acetan biosynthesis Rpal_3102 PWY-5344 L-homocysteine biosynthesis Rpal_3102 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_3113 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Rpal_3113 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Rpal_3114 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_3114 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_3114 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_3114 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Rpal_3114 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_3114 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_3134 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_3135 PWY-1622 formaldehyde assimilation I (serine pathway) Rpal_3135 PWY-181 photorespiration Rpal_3135 PWY-2161 folate polyglutamylation Rpal_3135 PWY-2201 folate transformations I Rpal_3135 PWY-3661 glycine betaine degradation I Rpal_3135 PWY-3661-1 glycine betaine degradation II (mammalian) Rpal_3135 PWY-3841 folate transformations II Rpal_3135 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_3138 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Rpal_3138 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_3145 PWY-5025 indole-3-acetate biosynthesis IV (bacteria) Rpal_3145 PWY-581 indole-3-acetate biosynthesis II Rpal_3145 PWY-7308 acrylonitrile degradation I Rpal_3146 PWY-5025 indole-3-acetate biosynthesis IV (bacteria) Rpal_3146 PWY-581 indole-3-acetate biosynthesis II Rpal_3146 PWY-7308 acrylonitrile degradation I Rpal_3147 PWY-5025 indole-3-acetate biosynthesis IV (bacteria) Rpal_3147 PWY-581 indole-3-acetate biosynthesis II Rpal_3147 PWY-7308 acrylonitrile degradation I Rpal_3150 PWY-6703 preQ0 biosynthesis Rpal_3182 PWY-5381 pyridine nucleotide cycling (plants) Rpal_3182 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Rpal_3182 PWY-6596 adenosine nucleotides degradation I Rpal_3182 PWY-6606 guanosine nucleotides degradation II Rpal_3182 PWY-6607 guanosine nucleotides degradation I Rpal_3182 PWY-6608 guanosine nucleotides degradation III Rpal_3182 PWY-7185 UTP and CTP dephosphorylation I Rpal_3185 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) Rpal_3205 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Rpal_3205 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Rpal_3216 PWY-1042 glycolysis IV (plant cytosol) Rpal_3216 PWY-1622 formaldehyde assimilation I (serine pathway) Rpal_3216 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Rpal_3216 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_3216 PWY-5723 Rubisco shunt Rpal_3216 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_3216 PWY-6886 1-butanol autotrophic biosynthesis Rpal_3216 PWY-6901 superpathway of glucose and xylose degradation Rpal_3216 PWY-7003 glycerol degradation to butanol Rpal_3216 PWY-7124 ethylene biosynthesis V (engineered) Rpal_3216 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Rpal_3217 PWY-6700 queuosine biosynthesis Rpal_3223 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Rpal_3223 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Rpal_3231 PWY-7176 UTP and CTP de novo biosynthesis Rpal_3231 PWY-7177 UTP and CTP dephosphorylation II Rpal_3231 PWY-7185 UTP and CTP dephosphorylation I Rpal_3233 PWY-1042 glycolysis IV (plant cytosol) Rpal_3233 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_3233 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_3233 PWY-7003 glycerol degradation to butanol Rpal_3248 PWY-6823 molybdenum cofactor biosynthesis Rpal_3251 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_3252 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_3258 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_3258 PWY-5973 cis-vaccenate biosynthesis Rpal_3258 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_3258 PWY-5994 palmitate biosynthesis I (animals and fungi) Rpal_3258 PWY-6113 superpathway of mycolate biosynthesis Rpal_3258 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_3258 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_3258 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_3258 PWYG-321 mycolate biosynthesis Rpal_3262 PWY-7560 methylerythritol phosphate pathway II Rpal_3282 PWY-5743 3-hydroxypropanoate cycle Rpal_3282 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_3282 PWY-6728 methylaspartate cycle Rpal_3282 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_3284 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Rpal_3284 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Rpal_3286 PWY-3781 aerobic respiration I (cytochrome c) Rpal_3286 PWY-4302 aerobic respiration III (alternative oxidase pathway) Rpal_3286 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Rpal_3286 PWY-6692 Fe(II) oxidation Rpal_3287 PWY-3781 aerobic respiration I (cytochrome c) Rpal_3287 PWY-4302 aerobic respiration III (alternative oxidase pathway) Rpal_3287 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Rpal_3287 PWY-6692 Fe(II) oxidation Rpal_3313 PWY-6938 NADH repair Rpal_3315 PWY-381 nitrate reduction II (assimilatory) Rpal_3315 PWY-5675 nitrate reduction V (assimilatory) Rpal_3315 PWY-6549 L-glutamine biosynthesis III Rpal_3315 PWY-6963 ammonia assimilation cycle I Rpal_3315 PWY-6964 ammonia assimilation cycle II Rpal_3319 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Rpal_3322 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_3325 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_3325 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_3325 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_3325 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_3325 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Rpal_3325 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Rpal_3325 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Rpal_3325 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Rpal_3407 PWY-2941 L-lysine biosynthesis II Rpal_3407 PWY-2942 L-lysine biosynthesis III Rpal_3407 PWY-5097 L-lysine biosynthesis VI Rpal_3450 PWY-3841 folate transformations II Rpal_3450 PWY-6614 tetrahydrofolate biosynthesis Rpal_3452 PWY-1281 sulfoacetaldehyde degradation I Rpal_3452 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Rpal_3452 PWY-5482 pyruvate fermentation to acetate II Rpal_3452 PWY-5485 pyruvate fermentation to acetate IV Rpal_3452 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_3452 PWY-6637 sulfolactate degradation II Rpal_3452 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Rpal_3460 PWY-5269 cardiolipin biosynthesis II Rpal_3460 PWY-5668 cardiolipin biosynthesis I Rpal_3461 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_3461 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_3461 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_3462 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_3462 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Rpal_3466 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Rpal_3466 PWY-7176 UTP and CTP de novo biosynthesis Rpal_3466 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_3466 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_3466 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Rpal_3466 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_3466 PWY-7205 CMP phosphorylation Rpal_3466 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_3466 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Rpal_3466 PWY-7221 guanosine ribonucleotides de novo biosynthesis Rpal_3466 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Rpal_3466 PWY-7224 purine deoxyribonucleosides salvage Rpal_3466 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Rpal_3466 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Rpal_3470 PWY-5988 wound-induced proteolysis I Rpal_3470 PWY-6018 seed germination protein turnover Rpal_3479 PWY-7221 guanosine ribonucleotides de novo biosynthesis Rpal_3484 PWY-5367 petroselinate biosynthesis Rpal_3484 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_3484 PWY-5973 cis-vaccenate biosynthesis Rpal_3484 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_3484 PWY-5994 palmitate biosynthesis I (animals and fungi) Rpal_3484 PWY-6113 superpathway of mycolate biosynthesis Rpal_3484 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_3484 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_3484 PWY-6951 Rpal_3484 Rpal_3484 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) Rpal_3484 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_3484 PWYG-321 mycolate biosynthesis Rpal_3485 PWY-4381 fatty acid biosynthesis initiation I Rpal_3485 PWY-6799 fatty acid biosynthesis (plant mitochondria) Rpal_3485 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_3495 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_3501 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_3501 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_3501 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_3501 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Rpal_3508 PWY-6654 phosphopantothenate biosynthesis III Rpal_3517 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_3522 PWY-723 alkylnitronates degradation Rpal_3526 PWY-5081 L-tryptophan degradation VIII (to tryptophol) Rpal_3527 PWY-5686 UMP biosynthesis Rpal_3528 PWY-5686 UMP biosynthesis Rpal_3579 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Rpal_3579 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Rpal_3584 PWY-6339 syringate degradation Rpal_3618 PWY-4381 fatty acid biosynthesis initiation I Rpal_3618 PWY-5743 3-hydroxypropanoate cycle Rpal_3618 PWY-5744 glyoxylate assimilation Rpal_3618 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_3618 PWY-6679 jadomycin biosynthesis Rpal_3618 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_3646 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_3698 PWY-5874 heme degradation Rpal_3698 PWY-5915 phycoerythrobilin biosynthesis I Rpal_3698 PWY-5917 phycocyanobilin biosynthesis Rpal_3698 PWY-7170 phytochromobilin biosynthesis Rpal_3719 PWY-6857 retinol biosynthesis Rpal_3727 PWY-6523 nitrite-dependent anaerobic methane oxidation Rpal_3727 PWY-6748 nitrate reduction VII (denitrification) Rpal_3727 PWY-7084 nitrifier denitrification Rpal_3732 PWY-5506 methanol oxidation to formaldehyde IV Rpal_3744 PWY-6749 CMP-legionaminate biosynthesis I Rpal_3745 PWY-5659 GDP-mannose biosynthesis Rpal_3745 PWY-6073 alginate biosynthesis I (algal) Rpal_3745 PWY-6082 alginate biosynthesis II (bacterial) Rpal_3745 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) Rpal_3758 PWY-6012 acyl carrier protein metabolism I Rpal_3758 PWY-6012-1 acyl carrier protein metabolism II (mammalian) Rpal_3856 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Rpal_3856 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Rpal_3856 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Rpal_3872 PWY-5663 tetrahydrobiopterin biosynthesis I Rpal_3872 PWY-5664 tetrahydrobiopterin biosynthesis II Rpal_3872 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Rpal_3872 PWY-6703 preQ0 biosynthesis Rpal_3872 PWY-6983 tetrahydrobiopterin biosynthesis III Rpal_3872 PWY-7442 drosopterin and aurodrosopterin biosynthesis Rpal_3916 PWY-6936 seleno-amino acid biosynthesis Rpal_3916 PWY-7274 D-cycloserine biosynthesis Rpal_3929 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_3940 PWY-5642 2,4-dinitrotoluene degradation Rpal_3940 PWY-6373 acrylate degradation Rpal_3945 PWY-4381 fatty acid biosynthesis initiation I Rpal_3945 PWY-5743 3-hydroxypropanoate cycle Rpal_3945 PWY-5744 glyoxylate assimilation Rpal_3945 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_3945 PWY-6679 jadomycin biosynthesis Rpal_3945 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Rpal_3962 PWY-5101 L-isoleucine biosynthesis II Rpal_3962 PWY-5103 L-isoleucine biosynthesis III Rpal_3962 PWY-5104 L-isoleucine biosynthesis IV Rpal_3962 PWY-7111 pyruvate fermentation to isobutanol (engineered) Rpal_4006 PWY-3841 folate transformations II Rpal_4006 PWY-6614 tetrahydrofolate biosynthesis Rpal_4007 PWY-3841 folate transformations II Rpal_4007 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Rpal_4007 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_4007 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Rpal_4007 PWY-7199 pyrimidine deoxyribonucleosides salvage Rpal_4007 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Rpal_4014 PWY-5392 reductive TCA cycle II Rpal_4014 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_4014 PWY-5690 TCA cycle II (plants and fungi) Rpal_4014 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_4014 PWY-6728 methylaspartate cycle Rpal_4014 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4014 PWY-7254 TCA cycle VII (acetate-producers) Rpal_4014 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_4018 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4018 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4043 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4043 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4046 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4046 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4047 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4047 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4048 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Rpal_4048 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) Rpal_4048 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Rpal_4048 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Rpal_4050 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4050 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4051 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Rpal_4051 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Rpal_4051 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Rpal_4052 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_4052 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_4072 PWY-4202 arsenate detoxification I (glutaredoxin) Rpal_4072 PWY-4621 arsenate detoxification II (glutaredoxin) Rpal_4080 PWY-4202 arsenate detoxification I (glutaredoxin) Rpal_4094 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_4094 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_4095 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Rpal_4095 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Rpal_4095 PWY-6897 thiamin salvage II Rpal_4095 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Rpal_4095 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Rpal_4095 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Rpal_4095 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Rpal_4096 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis Rpal_4133 PWY-5350 thiosulfate disproportionation III (rhodanese) Rpal_4149 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_4155 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_4155 PWY-3801 sucrose degradation II (sucrose synthase) Rpal_4155 PWY-5054 sorbitol biosynthesis I Rpal_4155 PWY-5384 sucrose degradation IV (sucrose phosphorylase) Rpal_4155 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Rpal_4155 PWY-5659 GDP-mannose biosynthesis Rpal_4155 PWY-5723 Rubisco shunt Rpal_4155 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_4155 PWY-621 sucrose degradation III (sucrose invertase) Rpal_4155 PWY-622 starch biosynthesis Rpal_4155 PWY-6531 mannitol cycle Rpal_4155 PWY-6981 chitin biosynthesis Rpal_4155 PWY-7238 sucrose biosynthesis II Rpal_4155 PWY-7347 sucrose biosynthesis III Rpal_4155 PWY-7385 1,3-propanediol biosynthesis (engineered) Rpal_4157 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Rpal_4158 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Rpal_4158 PWY-6855 chitin degradation I (archaea) Rpal_4158 PWY-6906 chitin derivatives degradation Rpal_4159 PWY-5530 sorbitol biosynthesis II Rpal_4159 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_4162 PWY-5941 glycogen degradation II (eukaryotic) Rpal_4162 PWY-6724 starch degradation II Rpal_4162 PWY-6737 starch degradation V Rpal_4162 PWY-7238 sucrose biosynthesis II Rpal_4164 PWY-2622 trehalose biosynthesis IV Rpal_4165 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose) Rpal_4165 PWY-622 starch biosynthesis Rpal_4167 PWY-2661 trehalose biosynthesis V Rpal_4168 PWY-2661 trehalose biosynthesis V Rpal_4175 PWY-5964 guanylyl molybdenum cofactor biosynthesis Rpal_4177 PWY-723 alkylnitronates degradation Rpal_4182 PWY-5704 urea degradation II Rpal_4184 PWY-5704 urea degradation II Rpal_4185 PWY-5704 urea degradation II Rpal_4207 PWY-5988 wound-induced proteolysis I Rpal_4207 PWY-6018 seed germination protein turnover Rpal_4216 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Rpal_4216 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Rpal_4217 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) Rpal_4223 PWY-2201 folate transformations I Rpal_4223 PWY-3841 folate transformations II Rpal_4224 PWY-2201 folate transformations I Rpal_4224 PWY-3841 folate transformations II Rpal_4226 PWY-4261 glycerol degradation I Rpal_4231 PWY-6683 sulfate reduction III (assimilatory) Rpal_4238 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_4238 PWY-5109 2-methylbutanoate biosynthesis Rpal_4238 PWY-5136 fatty acid β-oxidation II (peroxisome) Rpal_4238 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Rpal_4238 PWY-5177 glutaryl-CoA degradation Rpal_4238 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_4238 PWY-6435 4-hydroxybenzoate biosynthesis V Rpal_4238 PWY-6583 pyruvate fermentation to butanol I Rpal_4238 PWY-6863 pyruvate fermentation to hexanol Rpal_4238 PWY-6883 pyruvate fermentation to butanol II Rpal_4238 PWY-6944 androstenedione degradation Rpal_4238 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Rpal_4238 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Rpal_4238 PWY-7007 methyl ketone biosynthesis Rpal_4238 PWY-7046 4-coumarate degradation (anaerobic) Rpal_4238 PWY-7094 fatty acid salvage Rpal_4238 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Rpal_4238 PWY-735 jasmonic acid biosynthesis Rpal_4238 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Rpal_4251 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) Rpal_4251 PWY-7494 choline degradation IV Rpal_4255 PWY-7560 methylerythritol phosphate pathway II Rpal_4261 PWY-6098 diploterol and cycloartenol biosynthesis Rpal_4261 PWY-7072 hopanoid biosynthesis (bacteria) Rpal_4338 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_4340 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_4340 PWY-5723 Rubisco shunt Rpal_4343 PWY-6123 inosine-5'-phosphate biosynthesis I Rpal_4343 PWY-6124 inosine-5'-phosphate biosynthesis II Rpal_4343 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_4343 PWY-7234 inosine-5'-phosphate biosynthesis III Rpal_4344 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_4344 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_4344 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_4346 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Rpal_4346 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Rpal_4346 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Rpal_4347 PWY-6123 inosine-5'-phosphate biosynthesis I Rpal_4347 PWY-6124 inosine-5'-phosphate biosynthesis II Rpal_4347 PWY-7234 inosine-5'-phosphate biosynthesis III Rpal_4362 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_4362 PWY-6549 L-glutamine biosynthesis III Rpal_4362 PWY-6728 methylaspartate cycle Rpal_4362 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4362 PWY-7124 ethylene biosynthesis V (engineered) Rpal_4362 PWY-7254 TCA cycle VII (acetate-producers) Rpal_4362 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Rpal_4397 PWY-5392 reductive TCA cycle II Rpal_4397 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Rpal_4397 PWY-5690 TCA cycle II (plants and fungi) Rpal_4397 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_4397 PWY-6728 methylaspartate cycle Rpal_4397 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4397 PWY-7254 TCA cycle VII (acetate-producers) Rpal_4397 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_4402 PWY-1801 formaldehyde oxidation II (glutathione-dependent) Rpal_4448 PWY-3221 dTDP-L-rhamnose biosynthesis II Rpal_4448 PWY-6808 dTDP-D-forosamine biosynthesis Rpal_4448 PWY-6942 dTDP-D-desosamine biosynthesis Rpal_4448 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Rpal_4448 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Rpal_4448 PWY-6974 dTDP-L-olivose biosynthesis Rpal_4448 PWY-6976 dTDP-L-mycarose biosynthesis Rpal_4448 PWY-7104 dTDP-L-megosamine biosynthesis Rpal_4448 PWY-7301 dTDP-β-L-noviose biosynthesis Rpal_4448 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Rpal_4448 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Rpal_4448 PWY-7316 dTDP-N-acetylviosamine biosynthesis Rpal_4448 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Rpal_4448 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Rpal_4448 PWY-7414 dTDP-α-D-mycaminose biosynthesis Rpal_4448 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Rpal_4472 PWY-5738 GDP-6-deoxy-D-talose biosynthesis Rpal_4472 PWY-5739 GDP-D-perosamine biosynthesis Rpal_4472 PWY-5740 GDP-L-colitose biosynthesis Rpal_4472 PWY-66 GDP-L-fucose biosynthesis I (from GDP-D-mannose) Rpal_4475 PWY-101 photosynthesis light reactions Rpal_4475 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Rpal_4481 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Rpal_4493 PWY-6910 hydroxymethylpyrimidine salvage Rpal_4493 PWY-7356 thiamin salvage IV (yeast) Rpal_4493 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Rpal_4505 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Rpal_4505 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Rpal_4505 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Rpal_4510 PWY-6478 GDP-D-glycero-α-D-manno-heptose biosynthesis Rpal_4513 PWY-3821 galactose degradation III Rpal_4513 PWY-6317 galactose degradation I (Leloir pathway) Rpal_4513 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis Rpal_4513 PWY-6527 stachyose degradation Rpal_4513 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Rpal_4513 PWY-7344 UDP-D-galactose biosynthesis Rpal_4545 PWY-5041 S-adenosyl-L-methionine cycle II Rpal_4546 PWY-5041 S-adenosyl-L-methionine cycle II Rpal_4546 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis Rpal_4548 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) Rpal_4554 PWY-5041 S-adenosyl-L-methionine cycle II Rpal_4554 PWY-6151 S-adenosyl-L-methionine cycle I Rpal_4554 PWY-6936 seleno-amino acid biosynthesis Rpal_4554 PWY-702 L-methionine biosynthesis II Rpal_4562 PWY-2201 folate transformations I Rpal_4562 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_4563 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_4563 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Rpal_4578 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis Rpal_4586 PWY-3821 galactose degradation III Rpal_4586 PWY-6317 galactose degradation I (Leloir pathway) Rpal_4586 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis Rpal_4586 PWY-6527 stachyose degradation Rpal_4586 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Rpal_4586 PWY-7344 UDP-D-galactose biosynthesis Rpal_4605 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_4605 PWY-5686 UMP biosynthesis Rpal_4605 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_4623 PWY-6523 nitrite-dependent anaerobic methane oxidation Rpal_4623 PWY-6748 nitrate reduction VII (denitrification) Rpal_4623 PWY-7084 nitrifier denitrification Rpal_4625 PWY-7181 pyrimidine deoxyribonucleosides degradation Rpal_4654 PWY-6123 inosine-5'-phosphate biosynthesis I Rpal_4654 PWY-7234 inosine-5'-phosphate biosynthesis III Rpal_4663 PWY-3781 aerobic respiration I (cytochrome c) Rpal_4663 PWY-4521 arsenite oxidation I (respiratory) Rpal_4663 PWY-6692 Fe(II) oxidation Rpal_4663 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Rpal_4670 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) Rpal_4673 PWY-1042 glycolysis IV (plant cytosol) Rpal_4673 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Rpal_4673 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_4673 PWY-5723 Rubisco shunt Rpal_4673 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_4673 PWY-6886 1-butanol autotrophic biosynthesis Rpal_4673 PWY-6901 superpathway of glucose and xylose degradation Rpal_4673 PWY-7003 glycerol degradation to butanol Rpal_4673 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Rpal_4673 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Rpal_4679 PWY-7425 2-chloroacrylate degradation I Rpal_4690 PWY-381 nitrate reduction II (assimilatory) Rpal_4690 PWY-5675 nitrate reduction V (assimilatory) Rpal_4690 PWY-6549 L-glutamine biosynthesis III Rpal_4690 PWY-6963 ammonia assimilation cycle I Rpal_4690 PWY-6964 ammonia assimilation cycle II Rpal_4694 PWY-6683 sulfate reduction III (assimilatory) Rpal_4696 PWY-5194 siroheme biosynthesis Rpal_4696 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Rpal_4697 PWY-6728 methylaspartate cycle Rpal_4697 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4697 PWY-7118 chitin degradation to ethanol Rpal_4697 PWY-7294 xylose degradation IV Rpal_4697 PWY-7295 L-arabinose degradation IV Rpal_4719 PWY-5392 reductive TCA cycle II Rpal_4719 PWY-5537 pyruvate fermentation to acetate V Rpal_4719 PWY-5538 pyruvate fermentation to acetate VI Rpal_4719 PWY-5690 TCA cycle II (plants and fungi) Rpal_4719 PWY-5913 TCA cycle VI (obligate autotrophs) Rpal_4719 PWY-6728 methylaspartate cycle Rpal_4719 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4719 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Rpal_4730 PWY-5344 L-homocysteine biosynthesis Rpal_4730 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_4750 PWY-702 L-methionine biosynthesis II Rpal_4751 PWY-7560 methylerythritol phosphate pathway II Rpal_4774 PWY-7219 adenosine ribonucleotides de novo biosynthesis Rpal_4798 PWY-6749 CMP-legionaminate biosynthesis I Rpal_4803 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_4847 PWY-6167 flavin biosynthesis II (archaea) Rpal_4847 PWY-6168 flavin biosynthesis III (fungi) Rpal_4850 PWY-3341 L-proline biosynthesis III Rpal_4850 PWY-4981 L-proline biosynthesis II (from arginine) Rpal_4850 PWY-6344 L-ornithine degradation II (Stickland reaction) Rpal_4854 PWY-5057 L-valine degradation II Rpal_4854 PWY-5076 L-leucine degradation III Rpal_4854 PWY-5078 L-isoleucine degradation II Rpal_4854 PWY-5101 L-isoleucine biosynthesis II Rpal_4854 PWY-5103 L-isoleucine biosynthesis III Rpal_4854 PWY-5104 L-isoleucine biosynthesis IV Rpal_4854 PWY-5108 L-isoleucine biosynthesis V Rpal_4863 PWY-5523 5,6-dimethylbenzimidazole biosynthesis Rpal_4863 PWY-6167 flavin biosynthesis II (archaea) Rpal_4863 PWY-6168 flavin biosynthesis III (fungi) Rpal_4878 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Rpal_4895 PWY-4261 glycerol degradation I Rpal_4895 PWY-6118 glycerol-3-phosphate shuttle Rpal_4895 PWY-6952 glycerophosphodiester degradation Rpal_4906 PWY-4041 γ-glutamyl cycle Rpal_4906 PWY-5826 hypoglycin biosynthesis Rpal_4925 PWY-5344 L-homocysteine biosynthesis Rpal_4926 PWY-3461 L-tyrosine biosynthesis II Rpal_4926 PWY-3462 L-phenylalanine biosynthesis II Rpal_4926 PWY-6120 L-tyrosine biosynthesis III Rpal_4926 PWY-6627 salinosporamide A biosynthesis Rpal_4951 PWY-6825 phosphatidylcholine biosynthesis V Rpal_4952 PWY-5274 sulfide oxidation II (sulfide dehydrogenase) Rpal_4953 PWY-5274 sulfide oxidation II (sulfide dehydrogenase) Rpal_4990 PWY-6605 adenine and adenosine salvage II Rpal_4990 PWY-6610 adenine and adenosine salvage IV Rpal_4991 PWY-5958 acridone alkaloid biosynthesis Rpal_4991 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Rpal_4991 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Rpal_5024 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Rpal_5024 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Rpal_5042 PWY-6654 phosphopantothenate biosynthesis III Rpal_5046 PWY-5482 pyruvate fermentation to acetate II Rpal_5046 PWY-5485 pyruvate fermentation to acetate IV Rpal_5046 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_5047 PWY-1281 sulfoacetaldehyde degradation I Rpal_5047 PWY-5482 pyruvate fermentation to acetate II Rpal_5047 PWY-5485 pyruvate fermentation to acetate IV Rpal_5047 PWY-5497 purine nucleobases degradation II (anaerobic) Rpal_5047 PWY-6637 sulfolactate degradation II Rpal_5048 PWY-5971 palmitate biosynthesis II (bacteria and plants) Rpal_5048 PWY-5973 cis-vaccenate biosynthesis Rpal_5048 PWY-5989 stearate biosynthesis II (bacteria and plants) Rpal_5048 PWY-6113 superpathway of mycolate biosynthesis Rpal_5048 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Rpal_5048 PWY-6519 8-amino-7-oxononanoate biosynthesis I Rpal_5048 PWY-7096 triclosan resistance Rpal_5048 PWYG-321 mycolate biosynthesis Rpal_5062 PWY-3821 galactose degradation III Rpal_5062 PWY-6317 galactose degradation I (Leloir pathway) Rpal_5062 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis Rpal_5062 PWY-6527 stachyose degradation Rpal_5062 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Rpal_5062 PWY-7344 UDP-D-galactose biosynthesis Rpal_5071 PWY-5344 L-homocysteine biosynthesis Rpal_5071 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Rpal_5072 PWY-5136 fatty acid β-oxidation II (peroxisome) Rpal_5072 PWY-5143 long-chain fatty acid activation Rpal_5072 PWY-5353 arachidonate biosynthesis I (lower eukaryotes) Rpal_5072 PWY-5885 wax esters biosynthesis II Rpal_5072 PWY-5972 stearate biosynthesis I (animals and fungi) Rpal_5072 PWY-5995 linoleate biosynthesis I (plants) Rpal_5072 PWY-6000 γ-linolenate biosynthesis II (animals) Rpal_5072 PWY-6001 linoleate biosynthesis II (animals) Rpal_5072 PWY-6803 phosphatidylcholine acyl editing Rpal_5072 PWY-6873 long chain fatty acid ester synthesis for microdiesel production Rpal_5072 PWY-6920 6-gingerol analog biosynthesis Rpal_5072 PWY-6951 Rpal_5072 Rpal_5072 PWY-7033 alkane biosynthesis II Rpal_5072 PWY-7035 (Z)-9-tricosene biosynthesis Rpal_5072 PWY-7049 icosapentaenoate biosynthesis II (metazoa) Rpal_5072 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) Rpal_5072 PWY-7094 fatty acid salvage Rpal_5072 PWY-7288 fatty acid β-oxidation (peroxisome, yeast) Rpal_5081 PWY-5692 allantoin degradation to glyoxylate II Rpal_5081 PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) Rpal_5088 PWY-3081 L-lysine biosynthesis V Rpal_5088 PWY-6871 3-methylbutanol biosynthesis Rpal_5089 PWY-6823 molybdenum cofactor biosynthesis Rpal_5089 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_5089 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_5089 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Rpal_5111 PWY-6823 molybdenum cofactor biosynthesis Rpal_5122 PWY-5532 adenosine nucleotides degradation IV Rpal_5122 PWY-5723 Rubisco shunt Rpal_5123 PWY-1042 glycolysis IV (plant cytosol) Rpal_5123 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_5123 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_5123 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Rpal_5123 PWY-7385 1,3-propanediol biosynthesis (engineered) Rpal_5124 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Rpal_5124 PWY-5723 Rubisco shunt Rpal_5124 PWY-6891 thiazole biosynthesis II (Bacillus) Rpal_5124 PWY-6892 thiazole biosynthesis I (E. coli) Rpal_5124 PWY-6901 superpathway of glucose and xylose degradation Rpal_5124 PWY-7560 methylerythritol phosphate pathway II Rpal_5125 PWY-5723 Rubisco shunt Rpal_5126 PWY-5484 glycolysis II (from fructose 6-phosphate) Rpal_5146 PWY-6871 3-methylbutanol biosynthesis Rpal_5166 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Rpal_5182 PWY-6216 3-chlorobenzoate degradation II (via protocatechuate) Rpal_5182 PWY-6217 3,4-dichlorobenzoate degradation Rpal_5189 PWY-723 alkylnitronates degradation Rpal_5205 PWY-5686 UMP biosynthesis Rpal_5208 PWY-5941 glycogen degradation II (eukaryotic) Rpal_5208 PWY-622 starch biosynthesis Rpal_5208 PWY-6731 starch degradation III Rpal_5208 PWY-6737 starch degradation V Rpal_5208 PWY-7238 sucrose biosynthesis II Rpal_5210 PWY-31 canavanine degradation Rpal_5210 PWY-4984 urea cycle Rpal_5210 PWY-6305 putrescine biosynthesis IV Rpal_5210 PWY-6922 L-Nδ-acetylornithine biosynthesis Rpal_5223 PWY-2941 L-lysine biosynthesis II Rpal_5223 PWY-2942 L-lysine biosynthesis III Rpal_5223 PWY-5097 L-lysine biosynthesis VI Rpal_5225 PWY-4983 L-citrulline-nitric oxide cycle Rpal_5225 PWY-4984 urea cycle Rpal_5225 PWY-5 canavanine biosynthesis Rpal_5225 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Rpal_5225 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_5230 PWY-1361 benzoyl-CoA degradation I (aerobic) Rpal_5230 PWY-5109 2-methylbutanoate biosynthesis Rpal_5230 PWY-5136 fatty acid β-oxidation II (peroxisome) Rpal_5230 PWY-5138 unsaturated, even numbered fatty acid β-oxidation Rpal_5230 PWY-5177 glutaryl-CoA degradation Rpal_5230 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Rpal_5230 PWY-6435 4-hydroxybenzoate biosynthesis V Rpal_5230 PWY-6583 pyruvate fermentation to butanol I Rpal_5230 PWY-6863 pyruvate fermentation to hexanol Rpal_5230 PWY-6883 pyruvate fermentation to butanol II Rpal_5230 PWY-6944 androstenedione degradation Rpal_5230 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) Rpal_5230 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) Rpal_5230 PWY-7007 methyl ketone biosynthesis Rpal_5230 PWY-7046 4-coumarate degradation (anaerobic) Rpal_5230 PWY-7094 fatty acid salvage Rpal_5230 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Rpal_5230 PWY-735 jasmonic acid biosynthesis Rpal_5230 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) Rpal_5233 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Rpal_5233 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Rpal_5233 PWY-6268 adenosylcobalamin salvage from cobalamin Rpal_5233 PWY-6269 adenosylcobalamin salvage from cobinamide II Rpal_5250 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Rpal_5258 PWY-4981 L-proline biosynthesis II (from arginine) Rpal_5258 PWY-4984 urea cycle Rpal_5258 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Rpal_5273 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Rpal_5307 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Rpal_5307 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II