Rpal_0001	SSF48295	TrpR-like
Rpal_0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0002	SSF55979	DNA clamp
Rpal_0003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0004	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0004	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0004	SSF56719	Type II DNA topoisomerase
Rpal_0005	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_0006	SSF46785	"Winged helix" DNA-binding domain
Rpal_0006	SSF54909	Dimeric alpha+beta barrel
Rpal_0007	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0008	SSF52833	Thioredoxin-like
Rpal_0009	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0010	SSF46785	"Winged helix" DNA-binding domain
Rpal_0010	SSF54909	Dimeric alpha+beta barrel
Rpal_0014	SSF55008	HMA, heavy metal-associated domain
Rpal_0014	SSF56784	HAD-like
Rpal_0014	SSF81653	Calcium ATPase, transduction domain A
Rpal_0014	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_0016	SSF54862	4Fe-4S ferredoxins
Rpal_0017	SSF46626	Cytochrome c
Rpal_0019	SSF46626	Cytochrome c
Rpal_0020	SSF81442	Cytochrome c oxidase subunit I-like
Rpal_0021	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_0021	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0022	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0023	SSF52833	Thioredoxin-like
Rpal_0024	SSF47616	GST C-terminal domain-like
Rpal_0024	SSF52833	Thioredoxin-like
Rpal_0025	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0026	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_0027	SSF103473	MFS general substrate transporter
Rpal_0028	SSF51569	Aldolase
Rpal_0029	SSF52335	Methylglyoxal synthase-like
Rpal_0029	SSF53927	Cytidine deaminase-like
Rpal_0031	SSF48013	NusB-like
Rpal_0031	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0033	SSF50199	Staphylococcal nuclease
Rpal_0034	SSF54001	Cysteine proteinases
Rpal_0035	SSF51905	FAD/NAD(P)-binding domain
Rpal_0035	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_0036	SSF46955	Putative DNA-binding domain
Rpal_0036	SSF50249	Nucleic acid-binding proteins
Rpal_0036	SSF54991	Anticodon-binding domain of PheRS
Rpal_0036	SSF55681	Class II aaRS and biotin synthetases
Rpal_0036	SSF56037	PheT/TilS domain
Rpal_0037	SSF52980	Restriction endonuclease-like
Rpal_0038	SSF46589	tRNA-binding arm
Rpal_0038	SSF55681	Class II aaRS and biotin synthetases
Rpal_0039	SSF74731	Ribosomal protein L20
Rpal_0040	SSF143034	L35p-like
Rpal_0041	SSF54364	Translation initiation factor IF3, N-terminal domain
Rpal_0041	SSF55200	Translation initiation factor IF3, C-terminal domain
Rpal_0042	SSF53474	alpha/beta-Hydrolases
Rpal_0043	SSF46548	alpha-helical ferredoxin
Rpal_0043	SSF48371	ARM repeat
Rpal_0044	SSF47616	GST C-terminal domain-like
Rpal_0044	SSF52833	Thioredoxin-like
Rpal_0046	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0047	SSF53098	Ribonuclease H-like
Rpal_0050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0053	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rpal_0054	SSF55804	Phoshotransferase/anion transport protein
Rpal_0056	SSF49764	HSP20-like chaperones
Rpal_0057	SSF50331	MOP-like
Rpal_0057	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0058	SSF161098	MetI-like
Rpal_0059	SSF161098	MetI-like
Rpal_0060	SSF53850	Periplasmic binding protein-like II
Rpal_0061	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_0062	SSF82771	GIY-YIG endonuclease
Rpal_0064	SSF55205	EPT/RTPC-like
Rpal_0065	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rpal_0066	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0067	SSF50249	Nucleic acid-binding proteins
Rpal_0068	SSF52096	ClpP/crotonase
Rpal_0069	SSF47729	IHF-like DNA-binding proteins
Rpal_0071	SSF51366	Ribulose-phoshate binding barrel
Rpal_0072	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_0073	SSF51366	Ribulose-phoshate binding barrel
Rpal_0074	SSF52096	ClpP/crotonase
Rpal_0075	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rpal_0075	SSF53623	MurD-like peptide ligases, catalytic domain
Rpal_0076	SSF52833	Thioredoxin-like
Rpal_0077	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0077	SSF52980	Restriction endonuclease-like
Rpal_0078	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0079	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_0080	SSF141371	PilZ domain-like
Rpal_0081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0081	SSF56112	Protein kinase-like (PK-like)
Rpal_0082	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0082	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0082	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0083	SSF51283	dUTPase-like
Rpal_0084	SSF102645	CoaB-like
Rpal_0084	SSF47598	Ribbon-helix-helix
Rpal_0084	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rpal_0085	SSF56112	Protein kinase-like (PK-like)
Rpal_0086	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0087	SSF46946	S13-like H2TH domain
Rpal_0087	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_0087	SSF81624	N-terminal domain of MutM-like DNA repair proteins
Rpal_0088	SSF47090	PGBD-like
Rpal_0088	SSF50494	Trypsin-like serine proteases
Rpal_0089	SSF69572	Activating enzymes of the ubiquitin-like proteins
Rpal_0090	SSF103473	MFS general substrate transporter
Rpal_0097	SSF46689	Homeodomain-like
Rpal_0097	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_0099	SSF111369	HlyD-like secretion proteins
Rpal_0100	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_0100	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_0100	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_0102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0103	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0104	SSF161098	MetI-like
Rpal_0105	SSF161098	MetI-like
Rpal_0106	SSF53850	Periplasmic binding protein-like II
Rpal_0107	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0107	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rpal_0108	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_0108	SSF51556	Metallo-dependent hydrolases
Rpal_0109	SSF46785	"Winged helix" DNA-binding domain
Rpal_0109	SSF53383	PLP-dependent transferases
Rpal_0110	SSF53822	Periplasmic binding protein-like I
Rpal_0111	SSF50129	GroES-like
Rpal_0111	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0112	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_0112	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_0113	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0114	SSF46689	Homeodomain-like
Rpal_0116	SSF53720	ALDH-like
Rpal_0117	SSF54427	NTF2-like
Rpal_0118	SSF51905	FAD/NAD(P)-binding domain
Rpal_0120	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0121	SSF51182	RmlC-like cupins
Rpal_0122	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0123	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_0125	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0125	SSF55781	GAF domain-like
Rpal_0125	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0125	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0126	SSF116726	TrkA C-terminal domain-like
Rpal_0126	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0126	SSF81324	Voltage-gated potassium channels
Rpal_0127	SSF56300	Metallo-dependent phosphatases
Rpal_0128	SSF56300	Metallo-dependent phosphatases
Rpal_0129	SSF53850	Periplasmic binding protein-like II
Rpal_0130	SSF161098	MetI-like
Rpal_0131	SSF161098	MetI-like
Rpal_0132	SSF50331	MOP-like
Rpal_0132	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0133	SSF46785	"Winged helix" DNA-binding domain
Rpal_0133	SSF53850	Periplasmic binding protein-like II
Rpal_0134	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0135	SSF161098	MetI-like
Rpal_0136	SSF53850	Periplasmic binding protein-like II
Rpal_0137	SSF53920	Fe-only hydrogenase
Rpal_0137	SSF54292	2Fe-2S ferredoxin-like
Rpal_0137	SSF54862	4Fe-4S ferredoxins
Rpal_0138	SSF140490	Nqo1C-terminal domain-like
Rpal_0138	SSF46548	alpha-helical ferredoxin
Rpal_0138	SSF51971	Nucleotide-binding domain
Rpal_0139	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_0140	SSF52172	CheY-like
Rpal_0140	SSF52738	Methylesterase CheB, C-terminal domain
Rpal_0141	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rpal_0141	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0142	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_0143	SSF50341	CheW-like
Rpal_0144	SSF50341	CheW-like
Rpal_0145	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_0145	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0145	SSF50341	CheW-like
Rpal_0145	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0146	SSF52172	CheY-like
Rpal_0147	SSF52091	SpoIIaa-like
Rpal_0148	SSF109604	HD-domain/PDEase-like
Rpal_0148	SSF52172	CheY-like
Rpal_0150	SSF53067	Actin-like ATPase domain
Rpal_0151	SSF141091	L21p-like
Rpal_0152	SSF110324	Ribosomal L27 protein-like
Rpal_0153	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0156	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0157	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0157	SSF82051	Obg GTP-binding protein N-terminal domain
Rpal_0158	SSF53633	Carbamate kinase-like
Rpal_0158	SSF88697	PUA domain-like
Rpal_0159	SSF53720	ALDH-like
Rpal_0160	SSF52374	Nucleotidylyl transferase
Rpal_0161	SSF81301	Nucleotidyltransferase
Rpal_0162	SSF75217	alpha/beta knot
Rpal_0163	SSF51261	Duplicated hybrid motif
Rpal_0164	SSF50156	PDZ domain-like
Rpal_0164	SSF52096	ClpP/crotonase
Rpal_0165	SSF88713	Glycoside hydrolase/deacetylase
Rpal_0166	SSF55811	Nudix
Rpal_0168	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0169	SSF55811	Nudix
Rpal_0170	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Rpal_0171	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_0171	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_0171	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0172	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Rpal_0173	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_0173	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_0173	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0174	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
Rpal_0175	SSF50685	Barwin-like endoglucanases
Rpal_0176	SSF161219	CHY zinc finger-like
Rpal_0176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0177	SSF47823	lambda integrase-like, N-terminal domain
Rpal_0177	SSF56349	DNA breaking-rejoining enzymes
Rpal_0180	SSF51905	FAD/NAD(P)-binding domain
Rpal_0180	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_0181	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0182	SSF161084	MAPEG domain-like
Rpal_0183	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rpal_0183	SSF51230	Single hybrid motif
Rpal_0183	SSF52777	CoA-dependent acyltransferases
Rpal_0184	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_0185	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0185	SSF52210	Succinyl-CoA synthetase domains
Rpal_0186	SSF52210	Succinyl-CoA synthetase domains
Rpal_0186	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_0187	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0187	SSF56327	LDH C-terminal domain-like
Rpal_0188	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0189	SSF55144	LigT-like
Rpal_0190	SSF52266	SGNH hydrolase
Rpal_0191	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0195	SSF56112	Protein kinase-like (PK-like)
Rpal_0196	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0198	SSF52833	Thioredoxin-like
Rpal_0199	SSF52016	LeuD/IlvD-like
Rpal_0199	SSF53732	Aconitase iron-sulfur domain
Rpal_0200	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0204	SSF52833	Thioredoxin-like
Rpal_0205	SSF81585	PsbU/PolX domain-like
Rpal_0207	SSF47364	Domain of the SRP/SRP receptor G-proteins
Rpal_0207	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0208	SSF55120	Pseudouridine synthase
Rpal_0209	SSF56801	Acetyl-CoA synthetase-like
Rpal_0210	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_0211	SSF103088	OmpA-like
Rpal_0214	SSF50475	FMN-binding split barrel
Rpal_0215	SSF46548	alpha-helical ferredoxin
Rpal_0215	SSF54292	2Fe-2S ferredoxin-like
Rpal_0216	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rpal_0216	SSF51905	FAD/NAD(P)-binding domain
Rpal_0216	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rpal_0217	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rpal_0218	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rpal_0219	SSF160240	Cation efflux protein cytoplasmic domain-like
Rpal_0219	SSF161111	Cation efflux protein transmembrane domain-like
Rpal_0220	SSF56801	Acetyl-CoA synthetase-like
Rpal_0221	SSF82153	FAS1 domain
Rpal_0222	SSF81342	Transmembrane di-heme cytochromes
Rpal_0223	SSF56524	Oxidoreductase molybdopterin-binding domain
Rpal_0224	SSF49329	Cu,Zn superoxide dismutase-like
Rpal_0225	SSF103473	MFS general substrate transporter
Rpal_0226	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_0229	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0229	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_0231	SSF53056	beta-carbonic anhydrase, cab
Rpal_0232	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_0233	SSF158472	HAMP domain-like
Rpal_0233	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_0234	SSF52016	LeuD/IlvD-like
Rpal_0235	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rpal_0240	SSF53732	Aconitase iron-sulfur domain
Rpal_0242	SSF50104	Translation proteins SH3-like domain
Rpal_0243	SSF75217	alpha/beta knot
Rpal_0244	SSF50346	PRC-barrel domain
Rpal_0244	SSF50447	Translation proteins
Rpal_0245	SSF54565	Ribosomal protein S16
Rpal_0246	SSF47446	Signal peptide-binding domain
Rpal_0246	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0247	SSF143120	YefM-like
Rpal_0248	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0250	SSF55136	Probable bacterial effector-binding domain
Rpal_0251	SSF54506	Diaminopimelate epimerase-like
Rpal_0252	SSF102114	Radical SAM enzymes
Rpal_0253	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0254	SSF88697	PUA domain-like
Rpal_0255	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_0255	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0256	SSF53067	Actin-like ATPase domain
Rpal_0257	SSF69618	HemD-like
Rpal_0259	SSF48452	TPR-like
Rpal_0260	SSF158472	HAMP domain-like
Rpal_0262	SSF51197	Clavaminate synthase-like
Rpal_0263	SSF51649	RuBisCo, C-terminal domain
Rpal_0263	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rpal_0264	SSF111038	YjbQ-like
Rpal_0265	SSF52266	SGNH hydrolase
Rpal_0268	SSF48452	TPR-like
Rpal_0268	SSF52833	Thioredoxin-like
Rpal_0269	SSF88697	PUA domain-like
Rpal_0270	SSF158997	Trm112p-like
Rpal_0271	SSF51905	FAD/NAD(P)-binding domain
Rpal_0272	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_0273	SSF53474	alpha/beta-Hydrolases
Rpal_0274	SSF46689	Homeodomain-like
Rpal_0274	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_0275	SSF54913	GlnB-like
Rpal_0276	SSF111352	Ammonium transporter
Rpal_0277	SSF54913	GlnB-like
Rpal_0278	SSF111352	Ammonium transporter
Rpal_0279	SSF81301	Nucleotidyltransferase
Rpal_0281	SSF53383	PLP-dependent transferases
Rpal_0282	SSF46785	"Winged helix" DNA-binding domain
Rpal_0282	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0283	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Rpal_0284	SSF56219	DNase I-like
Rpal_0285	SSF51206	cAMP-binding domain-like
Rpal_0286	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_0286	SSF52172	CheY-like
Rpal_0287	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_0288	SSF51419	PLP-binding barrel
Rpal_0289	SSF103190	Sensory domain-like
Rpal_0289	SSF158472	HAMP domain-like
Rpal_0289	SSF55073	Nucleotide cyclase
Rpal_0290	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_0290	SSF50677	ValRS/IleRS/LeuRS editing domain
Rpal_0290	SSF52374	Nucleotidylyl transferase
Rpal_0292	SSF48019	post-AAA+ oligomerization domain-like
Rpal_0292	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0293	SSF110849	ParB/Sulfiredoxin
Rpal_0294	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0295	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0296	SSF51905	FAD/NAD(P)-binding domain
Rpal_0297	SSF116878	TrmE connector domain
Rpal_0297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0298	SSF50249	Nucleic acid-binding proteins
Rpal_0298	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0298	SSF68912	Rho N-terminal domain-like
Rpal_0301	SSF52972	ITPase-like
Rpal_0302	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0303	SSF53098	Ribonuclease H-like
Rpal_0304	SSF54611	SecB-like
Rpal_0305	SSF54427	NTF2-like
Rpal_0306	SSF50685	Barwin-like endoglucanases
Rpal_0307	SSF160443	SMR domain-like
Rpal_0308	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0310	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_0311	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0313	SSF52317	Class I glutamine amidotransferase-like
Rpal_0314	SSF51366	Ribulose-phoshate binding barrel
Rpal_0315	SSF51366	Ribulose-phoshate binding barrel
Rpal_0316	SSF101386	all-alpha NTP pyrophosphatases
Rpal_0317	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0318	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0319	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0319	SSF52172	CheY-like
Rpal_0319	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0320	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0320	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0322	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0323	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_0323	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Rpal_0324	SSF52440	PreATP-grasp domain
Rpal_0324	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_0325	SSF52980	Restriction endonuclease-like
Rpal_0326	SSF53790	Tetrapyrrole methylase
Rpal_0327	SSF53822	Periplasmic binding protein-like I
Rpal_0328	SSF46785	"Winged helix" DNA-binding domain
Rpal_0329	SSF54427	NTF2-like
Rpal_0330	SSF102114	Radical SAM enzymes
Rpal_0331	SSF52972	ITPase-like
Rpal_0332	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0332	SSF55666	Ribonuclease PH domain 2-like
Rpal_0333	SSF46785	"Winged helix" DNA-binding domain
Rpal_0333	SSF55781	GAF domain-like
Rpal_0334	SSF51064	Head domain of nucleotide exchange factor GrpE
Rpal_0334	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
Rpal_0336	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Rpal_0336	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Rpal_0336	SSF53067	Actin-like ATPase domain
Rpal_0337	SSF46565	Chaperone J-domain
Rpal_0337	SSF49493	HSP40/DnaJ peptide-binding domain
Rpal_0337	SSF57938	DnaJ/Hsp40 cysteine-rich domain
Rpal_0338	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0339	SSF52218	Flavoproteins
Rpal_0340	SSF51366	Ribulose-phoshate binding barrel
Rpal_0341	SSF54909	Dimeric alpha+beta barrel
Rpal_0342	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0342	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_0343	SSF53649	Alkaline phosphatase-like
Rpal_0343	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Rpal_0344	SSF46689	Homeodomain-like
Rpal_0344	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rpal_0344	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rpal_0346	SSF48150	DNA-glycosylase
Rpal_0347	SSF53474	alpha/beta-Hydrolases
Rpal_0348	SSF53474	alpha/beta-Hydrolases
Rpal_0351	SSF53474	alpha/beta-Hydrolases
Rpal_0352	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0353	SSF52980	Restriction endonuclease-like
Rpal_0355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0355	SSF54980	EF-G C-terminal domain-like
Rpal_0357	SSF55594	HPr-like
Rpal_0358	SSF53062	PTS system fructose IIA component-like
Rpal_0359	SSF53795	PEP carboxykinase-like
Rpal_0360	SSF158472	HAMP domain-like
Rpal_0360	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0360	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0361	SSF52172	CheY-like
Rpal_0362	SSF50475	FMN-binding split barrel
Rpal_0363	SSF53795	PEP carboxykinase-like
Rpal_0363	SSF68923	PEP carboxykinase N-terminal domain
Rpal_0365	SSF55144	LigT-like
Rpal_0366	SSF56601	beta-lactamase/transpeptidase-like
Rpal_0367	SSF56219	DNase I-like
Rpal_0369	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0371	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_0371	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_0372	SSF55120	Pseudouridine synthase
Rpal_0372	SSF55174	Alpha-L RNA-binding motif
Rpal_0374	SSF141868	EAL domain-like
Rpal_0374	SSF55073	Nucleotide cyclase
Rpal_0374	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0375	SSF53383	PLP-dependent transferases
Rpal_0376	SSF46785	"Winged helix" DNA-binding domain
Rpal_0376	SSF54909	Dimeric alpha+beta barrel
Rpal_0377	SSF52833	Thioredoxin-like
Rpal_0378	SSF50129	GroES-like
Rpal_0378	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0379	SSF140376	ChaB-like
Rpal_0380	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0381	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_0382	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0382	SSF56327	LDH C-terminal domain-like
Rpal_0383	SSF53613	Ribokinase-like
Rpal_0384	SSF50692	ADC-like
Rpal_0384	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_0385	SSF51161	Trimeric LpxA-like enzymes
Rpal_0385	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_0386	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_0387	SSF52096	ClpP/crotonase
Rpal_0389	SSF102712	JAB1/MPN domain
Rpal_0389	SSF47781	RuvA domain 2-like
Rpal_0391	SSF100939	SPOC domain-like
Rpal_0392	SSF55920	Creatinase/aminopeptidase
Rpal_0393	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_0394	SSF55166	Hedgehog/DD-peptidase
Rpal_0395	SSF141868	EAL domain-like
Rpal_0395	SSF55073	Nucleotide cyclase
Rpal_0395	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0396	SSF53649	Alkaline phosphatase-like
Rpal_0397	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_0397	SSF69864	Argininosuccinate synthetase, C-terminal domain
Rpal_0398	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rpal_0400	SSF109604	HD-domain/PDEase-like
Rpal_0401	SSF102114	Radical SAM enzymes
Rpal_0403	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0404	SSF50129	GroES-like
Rpal_0404	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0405	SSF51905	FAD/NAD(P)-binding domain
Rpal_0406	SSF46689	Homeodomain-like
Rpal_0408	SSF55248	PCD-like
Rpal_0409	SSF53850	Periplasmic binding protein-like II
Rpal_0411	SSF56935	Porins
Rpal_0412	SSF50447	Translation proteins
Rpal_0412	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0412	SSF54980	EF-G C-terminal domain-like
Rpal_0413	SSF51905	FAD/NAD(P)-binding domain
Rpal_0413	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_0414	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0415	SSF50324	Inorganic pyrophosphatase
Rpal_0416	SSF53187	Zn-dependent exopeptidases
Rpal_0416	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_0417	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0417	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rpal_0418	SSF69786	YggU-like
Rpal_0420	SSF52096	ClpP/crotonase
Rpal_0421	SSF54427	NTF2-like
Rpal_0422	SSF52317	Class I glutamine amidotransferase-like
Rpal_0423	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0424	SSF158682	TerB-like
Rpal_0425	SSF48264	Cytochrome P450
Rpal_0426	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0426	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_0428	SSF46785	"Winged helix" DNA-binding domain
Rpal_0429	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_0430	SSF53901	Thiolase-like
Rpal_0431	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0433	SSF48113	Heme-dependent peroxidases
Rpal_0434	SSF46785	"Winged helix" DNA-binding domain
Rpal_0434	SSF53850	Periplasmic binding protein-like II
Rpal_0435	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0435	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_0436	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Rpal_0436	SSF50249	Nucleic acid-binding proteins
Rpal_0436	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0436	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Rpal_0436	SSF55666	Ribonuclease PH domain 2-like
Rpal_0437	SSF47060	S15/NS1 RNA-binding domain
Rpal_0438	SSF55120	Pseudouridine synthase
Rpal_0439	SSF89919	Ribosome-binding factor A, RbfA
Rpal_0440	SSF50447	Translation proteins
Rpal_0440	SSF52156	Initiation factor IF2/eIF5b, domain 3
Rpal_0440	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0441	SSF55315	L30e-like
Rpal_0441	SSF64376	YlxR-like
Rpal_0442	SSF47794	Rad51 N-terminal domain-like
Rpal_0442	SSF50249	Nucleic acid-binding proteins
Rpal_0442	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rpal_0442	SSF69705	Transcription factor NusA, N-terminal domain
Rpal_0443	SSF74942	YhbC-like, C-terminal domain
Rpal_0443	SSF75420	YhbC-like, N-terminal domain
Rpal_0445	SSF51197	Clavaminate synthase-like
Rpal_0446	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0447	SSF47413	lambda repressor-like DNA-binding domains
Rpal_0448	SSF56317	Carbon-nitrogen hydrolase
Rpal_0449	SSF54631	CBS-domain pair
Rpal_0449	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_0450	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rpal_0451	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0451	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Rpal_0452	SSF102114	Radical SAM enzymes
Rpal_0453	SSF56784	HAD-like
Rpal_0454	SSF46785	"Winged helix" DNA-binding domain
Rpal_0455	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0456	SSF53067	Actin-like ATPase domain
Rpal_0457	SSF110836	Hypothetical protein SAV1430
Rpal_0457	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rpal_0458	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_0459	SSF52374	Nucleotidylyl transferase
Rpal_0461	SSF53613	Ribokinase-like
Rpal_0462	SSF56801	Acetyl-CoA synthetase-like
Rpal_0463	SSF56601	beta-lactamase/transpeptidase-like
Rpal_0465	SSF53720	ALDH-like
Rpal_0466	SSF160935	VPA0735-like
Rpal_0467	SSF50882	beta-Barrel protease inhibitors
Rpal_0468	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0468	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_0469	SSF161098	MetI-like
Rpal_0470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0471	SSF53850	Periplasmic binding protein-like II
Rpal_0472	SSF102215	Creatininase
Rpal_0473	SSF56925	OMPA-like
Rpal_0474	SSF51395	FMN-linked oxidoreductases
Rpal_0475	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_0477	SSF53300	vWA-like
Rpal_0478	SSF140804	YidB-like
Rpal_0480	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0481	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_0481	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0482	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0483	SSF52096	ClpP/crotonase
Rpal_0484	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_0485	SSF52096	ClpP/crotonase
Rpal_0486	SSF53822	Periplasmic binding protein-like I
Rpal_0487	SSF50199	Staphylococcal nuclease
Rpal_0489	SSF141259	CarD-like
Rpal_0490	SSF54862	4Fe-4S ferredoxins
Rpal_0491	SSF55174	Alpha-L RNA-binding motif
Rpal_0492	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0494	SSF143800	L28p-like
Rpal_0495	SSF103190	Sensory domain-like
Rpal_0495	SSF158472	HAMP domain-like
Rpal_0495	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0495	SSF52172	CheY-like
Rpal_0495	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0495	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0497	SSF53300	vWA-like
Rpal_0498	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0499	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0501	SSF46565	Chaperone J-domain
Rpal_0502	SSF82657	BolA-like
Rpal_0503	SSF54631	CBS-domain pair
Rpal_0503	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_0504	SSF56796	Dehydroquinate synthase-like
Rpal_0505	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0507	SSF56349	DNA breaking-rejoining enzymes
Rpal_0508	SSF81342	Transmembrane di-heme cytochromes
Rpal_0509	SSF52096	ClpP/crotonase
Rpal_0510	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_0511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0511	SSF81767	Pre-protein crosslinking domain of SecA
Rpal_0511	SSF81886	Helical scaffold and wing domains of SecA
Rpal_0512	SSF109998	Triger factor/SurA peptide-binding domain-like
Rpal_0512	SSF54534	FKBP-like
Rpal_0513	SSF48334	DNA repair protein MutS, domain III
Rpal_0513	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0513	SSF53150	DNA repair protein MutS, domain II
Rpal_0513	SSF55271	DNA repair protein MutS, domain I
Rpal_0514	SSF53901	Thiolase-like
Rpal_0515	SSF103473	MFS general substrate transporter
Rpal_0516	SSF111369	HlyD-like secretion proteins
Rpal_0517	SSF46785	"Winged helix" DNA-binding domain
Rpal_0518	SSF46785	"Winged helix" DNA-binding domain
Rpal_0519	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0522	SSF141868	EAL domain-like
Rpal_0522	SSF55073	Nucleotide cyclase
Rpal_0523	SSF54975	Acylphosphatase/BLUF domain-like
Rpal_0525	SSF48576	Terpenoid synthases
Rpal_0526	SSF53955	Lysozyme-like
Rpal_0527	SSF57829	Zn-binding ribosomal proteins
Rpal_0530	SSF141868	EAL domain-like
Rpal_0530	SSF55073	Nucleotide cyclase
Rpal_0532	SSF53901	Thiolase-like
Rpal_0533	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0534	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0535	SSF50630	Acid proteases
Rpal_0536	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0538	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_0540	SSF46785	"Winged helix" DNA-binding domain
Rpal_0541	SSF53474	alpha/beta-Hydrolases
Rpal_0542	SSF158442	DsbB-like
Rpal_0548	SSF53474	alpha/beta-Hydrolases
Rpal_0550	SSF51182	RmlC-like cupins
Rpal_0551	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_0551	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_0553	SSF46785	"Winged helix" DNA-binding domain
Rpal_0553	SSF53850	Periplasmic binding protein-like II
Rpal_0554	SSF118215	Proton glutamate symport protein
Rpal_0555	SSF51182	RmlC-like cupins
Rpal_0556	SSF51182	RmlC-like cupins
Rpal_0557	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0559	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_0560	SSF56104	SAICAR synthase-like
Rpal_0561	SSF51182	RmlC-like cupins
Rpal_0563	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0564	SSF103378	2-methylcitrate dehydratase PrpD
Rpal_0568	SSF53474	alpha/beta-Hydrolases
Rpal_0570	SSF46689	Homeodomain-like
Rpal_0571	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0572	SSF53300	vWA-like
Rpal_0574	SSF52172	CheY-like
Rpal_0575	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0575	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0576	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0578	SSF53474	alpha/beta-Hydrolases
Rpal_0580	SSF53955	Lysozyme-like
Rpal_0580	SSF56601	beta-lactamase/transpeptidase-like
Rpal_0583	SSF53822	Periplasmic binding protein-like I
Rpal_0585	SSF54909	Dimeric alpha+beta barrel
Rpal_0586	SSF103190	Sensory domain-like
Rpal_0586	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0586	SSF52172	CheY-like
Rpal_0586	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0586	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0587	SSF158832	Tex N-terminal region-like
Rpal_0587	SSF47781	RuvA domain 2-like
Rpal_0587	SSF50249	Nucleic acid-binding proteins
Rpal_0587	SSF53098	Ribonuclease H-like
Rpal_0589	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0591	SSF46689	Homeodomain-like
Rpal_0592	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_0592	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0593	SSF50156	PDZ domain-like
Rpal_0593	SSF52096	ClpP/crotonase
Rpal_0594	SSF55021	ACT-like
Rpal_0594	SSF81301	Nucleotidyltransferase
Rpal_0594	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rpal_0594	SSF81891	Poly A polymerase C-terminal region-like
Rpal_0595	SSF56266	DmpA/ArgJ-like
Rpal_0597	SSF55811	Nudix
Rpal_0598	SSF46689	Homeodomain-like
Rpal_0598	SSF53098	Ribonuclease H-like
Rpal_0599	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0601	SSF53271	PRTase-like
Rpal_0602	SSF52833	Thioredoxin-like
Rpal_0603	SSF56317	Carbon-nitrogen hydrolase
Rpal_0605	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0606	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0607	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0608	SSF53633	Carbamate kinase-like
Rpal_0608	SSF55021	ACT-like
Rpal_0609	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Rpal_0609	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_0609	SSF52009	Phosphohistidine domain
Rpal_0609	SSF55781	GAF domain-like
Rpal_0610	SSF75620	Release factor
Rpal_0611	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0613	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0614	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0615	SSF51182	RmlC-like cupins
Rpal_0616	SSF53613	Ribokinase-like
Rpal_0617	SSF55811	Nudix
Rpal_0618	SSF54197	HIT-like
Rpal_0619	SSF48019	post-AAA+ oligomerization domain-like
Rpal_0619	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0620	SSF82607	YbaB-like
Rpal_0621	SSF111304	Recombination protein RecR
Rpal_0623	SSF103473	MFS general substrate transporter
Rpal_0625	SSF56420	Peptide deformylase
Rpal_0626	SSF50486	FMT C-terminal domain-like
Rpal_0626	SSF53328	Formyltransferase
Rpal_0627	SSF55120	Pseudouridine synthase
Rpal_0628	SSF53187	Zn-dependent exopeptidases
Rpal_0628	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_0630	SSF51161	Trimeric LpxA-like enzymes
Rpal_0631	SSF56784	HAD-like
Rpal_0632	SSF47090	PGBD-like
Rpal_0633	SSF53633	Carbamate kinase-like
Rpal_0635	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0637	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_0639	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0641	SSF51306	LexA/Signal peptidase
Rpal_0642	SSF47413	lambda repressor-like DNA-binding domains
Rpal_0644	SSF109709	KorB DNA-binding domain-like
Rpal_0644	SSF110849	ParB/Sulfiredoxin
Rpal_0646	SSF46955	Putative DNA-binding domain
Rpal_0646	SSF53098	Ribonuclease H-like
Rpal_0647	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0650	SSF48295	TrpR-like
Rpal_0656	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_0657	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0661	SSF46689	Homeodomain-like
Rpal_0662	SSF47090	PGBD-like
Rpal_0662	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
Rpal_0666	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_0684	SSF160719	gpW/gp25-like
Rpal_0689	SSF141658	Bacteriophage trimeric proteins domain
Rpal_0689	SSF56436	C-type lectin-like
Rpal_0698	SSF69279	Phage tail proteins
Rpal_0699	SSF50685	Barwin-like endoglucanases
Rpal_0701	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0705	SSF56784	HAD-like
Rpal_0706	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_0706	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_0707	SSF64518	Phase 1 flagellin
Rpal_0709	SSF101116	Flagellar export chaperone FliS
Rpal_0712	SSF117143	Flagellar hook protein flgE
Rpal_0715	SSF64518	Phase 1 flagellin
Rpal_0716	SSF64518	Phase 1 flagellin
Rpal_0717	SSF52096	ClpP/crotonase
Rpal_0718	SSF56801	Acetyl-CoA synthetase-like
Rpal_0719	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_0719	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0720	SSF52096	ClpP/crotonase
Rpal_0721	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0722	SSF46785	"Winged helix" DNA-binding domain
Rpal_0723	SSF50129	GroES-like
Rpal_0723	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0726	SSF53067	Actin-like ATPase domain
Rpal_0727	SSF53067	Actin-like ATPase domain
Rpal_0728	SSF56801	Acetyl-CoA synthetase-like
Rpal_0729	SSF54862	4Fe-4S ferredoxins
Rpal_0730	SSF46785	"Winged helix" DNA-binding domain
Rpal_0731	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0732	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0733	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0735	SSF53822	Periplasmic binding protein-like I
Rpal_0736	SSF56801	Acetyl-CoA synthetase-like
Rpal_0737	SSF47741	CO dehydrogenase ISP C-domain like
Rpal_0737	SSF54292	2Fe-2S ferredoxin-like
Rpal_0738	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rpal_0738	SSF56003	Molybdenum cofactor-binding domain
Rpal_0739	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
Rpal_0739	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_0740	SSF46785	"Winged helix" DNA-binding domain
Rpal_0740	SSF51206	cAMP-binding domain-like
Rpal_0741	SSF50129	GroES-like
Rpal_0741	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0742	SSF53474	alpha/beta-Hydrolases
Rpal_0743	SSF52096	ClpP/crotonase
Rpal_0744	SSF47240	Ferritin-like
Rpal_0745	SSF46548	alpha-helical ferredoxin
Rpal_0745	SSF47240	Ferritin-like
Rpal_0745	SSF51971	Nucleotide-binding domain
Rpal_0745	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_0745	SSF63380	Riboflavin synthase domain-like
Rpal_0746	SSF102114	Radical SAM enzymes
Rpal_0747	SSF46689	Homeodomain-like
Rpal_0748	SSF111369	HlyD-like secretion proteins
Rpal_0749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0752	SSF46785	"Winged helix" DNA-binding domain
Rpal_0752	SSF55781	GAF domain-like
Rpal_0754	SSF50475	FMN-binding split barrel
Rpal_0755	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0756	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_0756	SSF51556	Metallo-dependent hydrolases
Rpal_0757	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0758	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0761	SSF159709	PhnH-like
Rpal_0763	SSF46785	"Winged helix" DNA-binding domain
Rpal_0763	SSF64288	Chorismate lyase-like
Rpal_0765	SSF161098	MetI-like
Rpal_0766	SSF161098	MetI-like
Rpal_0767	SSF53850	Periplasmic binding protein-like II
Rpal_0768	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0769	SSF51161	Trimeric LpxA-like enzymes
Rpal_0770	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_0770	SSF51556	Metallo-dependent hydrolases
Rpal_0772	SSF53474	alpha/beta-Hydrolases
Rpal_0777	SSF54913	GlnB-like
Rpal_0780	SSF49777	PEBP-like
Rpal_0782	SSF55469	FMN-dependent nitroreductase-like
Rpal_0783	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Rpal_0785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0786	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0786	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rpal_0788	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0789	SSF52317	Class I glutamine amidotransferase-like
Rpal_0789	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0791	SSF53807	"Helical backbone" metal receptor
Rpal_0792	SSF53383	PLP-dependent transferases
Rpal_0793	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0794	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_0796	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0797	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0802	SSF46785	"Winged helix" DNA-binding domain
Rpal_0802	SSF53850	Periplasmic binding protein-like II
Rpal_0803	SSF52833	Thioredoxin-like
Rpal_0804	SSF140490	Nqo1C-terminal domain-like
Rpal_0804	SSF142019	Nqo1 FMN-binding domain-like
Rpal_0804	SSF142984	Nqo1 middle domain-like
Rpal_0804	SSF52833	Thioredoxin-like
Rpal_0805	SSF50692	ADC-like
Rpal_0805	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_0805	SSF54292	2Fe-2S ferredoxin-like
Rpal_0805	SSF54862	4Fe-4S ferredoxins
Rpal_0806	SSF53927	Cytidine deaminase-like
Rpal_0808	SSF103473	MFS general substrate transporter
Rpal_0809	SSF50952	Soluble quinoprotein glucose dehydrogenase
Rpal_0810	SSF46626	Cytochrome c
Rpal_0811	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0812	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0813	SSF53300	vWA-like
Rpal_0814	SSF56801	Acetyl-CoA synthetase-like
Rpal_0815	SSF57652	HIPIP (high potential iron protein)
Rpal_0817	SSF48695	Multiheme cytochromes
Rpal_0818	SSF50331	MOP-like
Rpal_0818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0819	SSF161098	MetI-like
Rpal_0820	SSF161098	MetI-like
Rpal_0821	SSF53850	Periplasmic binding protein-like II
Rpal_0822	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_0823	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_0824	SSF50447	Translation proteins
Rpal_0824	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rpal_0824	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0825	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0826	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0827	SSF75304	Amidase signature (AS) enzymes
Rpal_0829	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0830	SSF161098	MetI-like
Rpal_0831	SSF161098	MetI-like
Rpal_0832	SSF53850	Periplasmic binding protein-like II
Rpal_0833	SSF53850	Periplasmic binding protein-like II
Rpal_0834	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0835	SSF47473	EF-hand
Rpal_0836	SSF56935	Porins
Rpal_0837	SSF46785	"Winged helix" DNA-binding domain
Rpal_0837	SSF51206	cAMP-binding domain-like
Rpal_0838	SSF55073	Nucleotide cyclase
Rpal_0838	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0844	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_0845	SSF141868	EAL domain-like
Rpal_0845	SSF55073	Nucleotide cyclase
Rpal_0845	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0848	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_0848	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0849	SSF46626	Cytochrome c
Rpal_0851	SSF141868	EAL domain-like
Rpal_0851	SSF55073	Nucleotide cyclase
Rpal_0851	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0852	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0853	SSF48264	Cytochrome P450
Rpal_0854	SSF55073	Nucleotide cyclase
Rpal_0856	SSF103473	MFS general substrate transporter
Rpal_0857	SSF53383	PLP-dependent transferases
Rpal_0859	SSF50199	Staphylococcal nuclease
Rpal_0861	SSF52129	Caspase-like
Rpal_0862	SSF51069	Carbonic anhydrase
Rpal_0863	SSF51306	LexA/Signal peptidase
Rpal_0864	SSF56399	ADP-ribosylation
Rpal_0865	SSF51395	FMN-linked oxidoreductases
Rpal_0866	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0867	SSF53056	beta-carbonic anhydrase, cab
Rpal_0870	SSF50249	Nucleic acid-binding proteins
Rpal_0870	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rpal_0871	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0872	SSF48452	TPR-like
Rpal_0872	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0873	SSF56925	OMPA-like
Rpal_0874	SSF53822	Periplasmic binding protein-like I
Rpal_0875	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0876	SSF56300	Metallo-dependent phosphatases
Rpal_0877	SSF46785	"Winged helix" DNA-binding domain
Rpal_0877	SSF53850	Periplasmic binding protein-like II
Rpal_0878	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_0882	SSF81901	HCP-like
Rpal_0883	SSF46689	Homeodomain-like
Rpal_0884	SSF54427	NTF2-like
Rpal_0885	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_0885	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_0886	SSF53901	Thiolase-like
Rpal_0887	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_0887	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0887	SSF52096	ClpP/crotonase
Rpal_0888	SSF47616	GST C-terminal domain-like
Rpal_0888	SSF52833	Thioredoxin-like
Rpal_0889	SSF46785	"Winged helix" DNA-binding domain
Rpal_0890	SSF55931	Glutamine synthetase/guanido kinase
Rpal_0892	SSF51306	LexA/Signal peptidase
Rpal_0893	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rpal_0894	SSF46689	Homeodomain-like
Rpal_0896	SSF46785	"Winged helix" DNA-binding domain
Rpal_0897	SSF82784	OsmC-like
Rpal_0899	SSF49503	Cupredoxins
Rpal_0899	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
Rpal_0900	SSF81442	Cytochrome c oxidase subunit I-like
Rpal_0903	SSF110111	Ctag/Cox11
Rpal_0904	SSF81452	Cytochrome c oxidase subunit III-like
Rpal_0907	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_0908	SSF63411	LuxS/MPP-like metallohydrolase
Rpal_0909	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0913	SSF81333	F1F0 ATP synthase subunit C
Rpal_0914	SSF81336	F1F0 ATP synthase subunit A
Rpal_0916	SSF52833	Thioredoxin-like
Rpal_0918	SSF111038	YjbQ-like
Rpal_0919	SSF103473	MFS general substrate transporter
Rpal_0920	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_0920	SSF52172	CheY-like
Rpal_0921	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_0921	SSF52172	CheY-like
Rpal_0921	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0921	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_0922	SSF53383	PLP-dependent transferases
Rpal_0923	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_0924	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_0925	SSF56925	OMPA-like
Rpal_0926	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0927	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_0928	SSF53807	"Helical backbone" metal receptor
Rpal_0929	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0929	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rpal_0930	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rpal_0934	SSF54534	FKBP-like
Rpal_0935	SSF55298	YjgF-like
Rpal_0937	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0938	SSF50621	Alanine racemase C-terminal domain-like
Rpal_0938	SSF51419	PLP-binding barrel
Rpal_0940	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rpal_0943	SSF53800	Chelatase
Rpal_0944	SSF117892	Band 7/SPFH domain
Rpal_0946	SSF46689	Homeodomain-like
Rpal_0946	SSF55136	Probable bacterial effector-binding domain
Rpal_0947	SSF53697	SIS domain
Rpal_0950	SSF161098	MetI-like
Rpal_0951	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0952	SSF53850	Periplasmic binding protein-like II
Rpal_0954	SSF55073	Nucleotide cyclase
Rpal_0955	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_0956	SSF53474	alpha/beta-Hydrolases
Rpal_0957	SSF49764	HSP20-like chaperones
Rpal_0959	SSF51395	FMN-linked oxidoreductases
Rpal_0959	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_0959	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
Rpal_0960	SSF46548	alpha-helical ferredoxin
Rpal_0960	SSF51971	Nucleotide-binding domain
Rpal_0961	SSF52980	Restriction endonuclease-like
Rpal_0963	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0964	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0965	SSF52266	SGNH hydrolase
Rpal_0966	SSF51569	Aldolase
Rpal_0968	SSF47090	PGBD-like
Rpal_0968	SSF53955	Lysozyme-like
Rpal_0972	SSF46689	Homeodomain-like
Rpal_0973	SSF56655	Carbohydrate phosphatase
Rpal_0975	SSF53187	Zn-dependent exopeptidases
Rpal_0976	SSF52172	CheY-like
Rpal_0977	SSF56003	Molybdenum cofactor-binding domain
Rpal_0979	SSF52218	Flavoproteins
Rpal_0980	SSF51182	RmlC-like cupins
Rpal_0981	SSF46785	"Winged helix" DNA-binding domain
Rpal_0981	SSF53850	Periplasmic binding protein-like II
Rpal_0983	SSF143456	VC0467-like
Rpal_0984	SSF141868	EAL domain-like
Rpal_0984	SSF55073	Nucleotide cyclase
Rpal_0984	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_0985	SSF50129	GroES-like
Rpal_0985	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_0988	SSF143800	L28p-like
Rpal_0989	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_0989	SSF90123	ABC transporter transmembrane region
Rpal_0990	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_0991	SSF103088	OmpA-like
Rpal_0994	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_0997	SSF47413	lambda repressor-like DNA-binding domains
Rpal_1000	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rpal_1001	SSF143968	UbiD C-terminal domain-like
Rpal_1001	SSF50475	FMN-binding split barrel
Rpal_1002	SSF55718	SCP-like
Rpal_1005	SSF53474	alpha/beta-Hydrolases
Rpal_1006	SSF46689	Homeodomain-like
Rpal_1006	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_1007	SSF56655	Carbohydrate phosphatase
Rpal_1008	SSF81901	HCP-like
Rpal_1009	SSF51391	Thiamin phosphate synthase
Rpal_1010	SSF51569	Aldolase
Rpal_1011	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
Rpal_1013	SSF53748	Phosphoglycerate kinase
Rpal_1014	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1014	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_1015	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1015	SSF52922	TK C-terminal domain-like
Rpal_1017	SSF102829	Cell division protein ZapA-like
Rpal_1018	SSF50249	Nucleic acid-binding proteins
Rpal_1018	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1020	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1020	SSF55174	Alpha-L RNA-binding motif
Rpal_1021	SSF52309	N-(deoxy)ribosyltransferase-like
Rpal_1022	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1022	SSF52922	TK C-terminal domain-like
Rpal_1023	SSF116842	XseB-like
Rpal_1024	SSF52768	Arginase/deacetylase
Rpal_1025	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Rpal_1025	SSF56300	Metallo-dependent phosphatases
Rpal_1026	SSF47175	Cytochromes
Rpal_1027	SSF52096	ClpP/crotonase
Rpal_1028	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1028	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1029	SSF56349	DNA breaking-rejoining enzymes
Rpal_1030	SSF56349	DNA breaking-rejoining enzymes
Rpal_1038	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1039	SSF53098	Ribonuclease H-like
Rpal_1040	SSF49503	Cupredoxins
Rpal_1042	SSF55008	HMA, heavy metal-associated domain
Rpal_1042	SSF56784	HAD-like
Rpal_1042	SSF81653	Calcium ATPase, transduction domain A
Rpal_1042	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_1045	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1045	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1045	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1046	SSF111369	HlyD-like secretion proteins
Rpal_1047	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_1049	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Rpal_1050	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_1050	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_1050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1052	SSF81333	F1F0 ATP synthase subunit C
Rpal_1053	SSF81336	F1F0 ATP synthase subunit A
Rpal_1056	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Rpal_1057	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_1057	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rpal_1057	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1058	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1058	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1067	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_1068	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1068	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1072	SSF56784	HAD-like
Rpal_1072	SSF81653	Calcium ATPase, transduction domain A
Rpal_1072	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_1077	SSF102405	MCP/YpsA-like
Rpal_1078	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_1083	SSF53474	alpha/beta-Hydrolases
Rpal_1085	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_1085	SSF54292	2Fe-2S ferredoxin-like
Rpal_1085	SSF63380	Riboflavin synthase domain-like
Rpal_1087	SSF48695	Multiheme cytochromes
Rpal_1090	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_1091	SSF49503	Cupredoxins
Rpal_1092	SSF49503	Cupredoxins
Rpal_1094	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1094	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1102	SSF48537	Phospholipase C/P1 nuclease
Rpal_1103	SSF46626	Cytochrome c
Rpal_1106	SSF140931	Fic-like
Rpal_1108	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1112	SSF48295	TrpR-like
Rpal_1114	SSF48452	TPR-like
Rpal_1119	SSF47598	Ribbon-helix-helix
Rpal_1123	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1124	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1126	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_1127	SSF56024	Phospholipase D/nuclease
Rpal_1134	SSF143081	BB1717-like
Rpal_1138	SSF53098	Ribonuclease H-like
Rpal_1145	SSF53474	alpha/beta-Hydrolases
Rpal_1149	SSF56300	Metallo-dependent phosphatases
Rpal_1150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1152	SSF56770	HydA/Nqo6-like
Rpal_1153	SSF56762	HydB/Nqo4-like
Rpal_1154	SSF56770	HydA/Nqo6-like
Rpal_1155	SSF56762	HydB/Nqo4-like
Rpal_1156	SSF81342	Transmembrane di-heme cytochromes
Rpal_1157	SSF53163	HybD-like
Rpal_1159	SSF159127	HupF/HypC-like
Rpal_1160	SSF52833	Thioredoxin-like
Rpal_1162	SSF57802	Rubredoxin-like
Rpal_1164	SSF56762	HydB/Nqo4-like
Rpal_1166	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1167	SSF54975	Acylphosphatase/BLUF domain-like
Rpal_1167	SSF55821	YrdC/RibB
Rpal_1168	SSF159127	HupF/HypC-like
Rpal_1170	SSF55326	PurM N-terminal domain-like
Rpal_1170	SSF56042	PurM C-terminal domain-like
Rpal_1171	SSF46689	Homeodomain-like
Rpal_1171	SSF52172	CheY-like
Rpal_1171	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1172	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1172	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1172	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1173	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1173	SSF52172	CheY-like
Rpal_1173	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1173	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1174	SSF46785	"Winged helix" DNA-binding domain
Rpal_1174	SSF55781	GAF domain-like
Rpal_1175	SSF50022	ISP domain
Rpal_1175	SSF55961	Bet v1-like
Rpal_1176	SSF54368	Glutamine synthetase, N-terminal domain
Rpal_1176	SSF55931	Glutamine synthetase/guanido kinase
Rpal_1177	SSF53822	Periplasmic binding protein-like I
Rpal_1180	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1181	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1182	SSF52172	CheY-like
Rpal_1182	SSF55781	GAF domain-like
Rpal_1182	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1183	SSF46785	"Winged helix" DNA-binding domain
Rpal_1184	SSF46785	"Winged helix" DNA-binding domain
Rpal_1184	SSF51206	cAMP-binding domain-like
Rpal_1185	SSF53254	Phosphoglycerate mutase-like
Rpal_1187	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1187	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1188	SSF53474	alpha/beta-Hydrolases
Rpal_1189	SSF46785	"Winged helix" DNA-binding domain
Rpal_1190	SSF52821	Rhodanese/Cell cycle control phosphatase
Rpal_1191	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1192	SSF52833	Thioredoxin-like
Rpal_1194	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rpal_1194	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rpal_1195	SSF56801	Acetyl-CoA synthetase-like
Rpal_1197	SSF55811	Nudix
Rpal_1198	SSF48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Rpal_1199	SSF53213	LigB-like
Rpal_1200	SSF46689	Homeodomain-like
Rpal_1200	SSF51182	RmlC-like cupins
Rpal_1201	SSF48264	Cytochrome P450
Rpal_1202	SSF55718	SCP-like
Rpal_1202	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_1203	SSF52833	Thioredoxin-like
Rpal_1205	SSF54862	4Fe-4S ferredoxins
Rpal_1207	SSF46785	"Winged helix" DNA-binding domain
Rpal_1208	SSF50022	ISP domain
Rpal_1209	SSF53146	Nitrogenase accessory factor-like
Rpal_1211	SSF46785	"Winged helix" DNA-binding domain
Rpal_1212	SSF111369	HlyD-like secretion proteins
Rpal_1213	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1213	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1213	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1214	SSF52833	Thioredoxin-like
Rpal_1216	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_1216	SSF63380	Riboflavin synthase domain-like
Rpal_1217	SSF55856	Cytochrome b5-like heme/steroid binding domain
Rpal_1218	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1220	SSF53218	Molybdenum cofactor biosynthesis proteins
Rpal_1221	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_1222	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_1223	SSF46785	"Winged helix" DNA-binding domain
Rpal_1223	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_1224	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_1225	SSF102114	Radical SAM enzymes
Rpal_1226	SSF53098	Ribonuclease H-like
Rpal_1228	SSF52141	Uracil-DNA glycosylase-like
Rpal_1229	SSF51905	FAD/NAD(P)-binding domain
Rpal_1229	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_1229	SSF54862	4Fe-4S ferredoxins
Rpal_1230	SSF48452	TPR-like
Rpal_1231	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_1231	SSF55060	GHMP Kinase, C-terminal domain
Rpal_1232	SSF48576	Terpenoid synthases
Rpal_1233	SSF54913	GlnB-like
Rpal_1234	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1235	SSF52096	ClpP/crotonase
Rpal_1237	SSF55681	Class II aaRS and biotin synthetases
Rpal_1238	SSF52980	Restriction endonuclease-like
Rpal_1239	SSF109604	HD-domain/PDEase-like
Rpal_1243	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_1243	SSF52009	Phosphohistidine domain
Rpal_1243	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_1245	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rpal_1245	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rpal_1246	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rpal_1246	SSF51905	FAD/NAD(P)-binding domain
Rpal_1246	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rpal_1247	SSF142754	NadA-like
Rpal_1248	SSF50129	GroES-like
Rpal_1248	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1251	SSF46785	"Winged helix" DNA-binding domain
Rpal_1251	SSF55811	Nudix
Rpal_1252	SSF52799	(Phosphotyrosine protein) phosphatases II
Rpal_1253	SSF109604	HD-domain/PDEase-like
Rpal_1255	SSF48150	DNA-glycosylase
Rpal_1256	SSF103025	Folate-binding domain
Rpal_1257	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_1257	SSF51556	Metallo-dependent hydrolases
Rpal_1261	SSF55811	Nudix
Rpal_1263	SSF143081	BB1717-like
Rpal_1266	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_1266	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_1267	SSF55821	YrdC/RibB
Rpal_1268	SSF46689	Homeodomain-like
Rpal_1269	SSF103473	MFS general substrate transporter
Rpal_1270	SSF51556	Metallo-dependent hydrolases
Rpal_1277	SSF53955	Lysozyme-like
Rpal_1280	SSF46785	"Winged helix" DNA-binding domain
Rpal_1280	SSF51206	cAMP-binding domain-like
Rpal_1282	SSF69118	AhpD-like
Rpal_1283	SSF142695	RibA-like
Rpal_1283	SSF55821	YrdC/RibB
Rpal_1284	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1284	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1285	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_1286	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_1287	SSF75625	YebC-like
Rpal_1289	SSF53098	Ribonuclease H-like
Rpal_1290	SSF46929	DNA helicase RuvA subunit, C-terminal domain
Rpal_1290	SSF47781	RuvA domain 2-like
Rpal_1290	SSF50249	Nucleic acid-binding proteins
Rpal_1291	SSF53927	Cytidine deaminase-like
Rpal_1292	SSF46785	"Winged helix" DNA-binding domain
Rpal_1292	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1293	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1294	SSF51905	FAD/NAD(P)-binding domain
Rpal_1296	SSF54427	NTF2-like
Rpal_1297	SSF46689	Homeodomain-like
Rpal_1297	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_1298	SSF54909	Dimeric alpha+beta barrel
Rpal_1299	SSF48452	TPR-like
Rpal_1299	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1299	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1300	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1303	SSF54909	Dimeric alpha+beta barrel
Rpal_1304	SSF46689	Homeodomain-like
Rpal_1304	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_1306	SSF69118	AhpD-like
Rpal_1307	SSF54427	NTF2-like
Rpal_1307	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1307	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1311	SSF52964	TolB, N-terminal domain
Rpal_1311	SSF69304	Tricorn protease N-terminal domain
Rpal_1312	SSF141868	EAL domain-like
Rpal_1312	SSF55073	Nucleotide cyclase
Rpal_1312	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1313	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_1314	SSF103088	OmpA-like
Rpal_1315	SSF48452	TPR-like
Rpal_1316	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1317	SSF140990	FtsH protease domain-like
Rpal_1317	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1320	SSF46689	Homeodomain-like
Rpal_1321	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_1321	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_1322	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_1322	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_1323	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1323	SSF54862	4Fe-4S ferredoxins
Rpal_1326	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1326	SSF90123	ABC transporter transmembrane region
Rpal_1329	SSF51905	FAD/NAD(P)-binding domain
Rpal_1331	SSF48592	GroEL equatorial domain-like
Rpal_1331	SSF52029	GroEL apical domain-like
Rpal_1331	SSF54849	GroEL-intermediate domain like
Rpal_1332	SSF50129	GroES-like
Rpal_1334	SSF103473	MFS general substrate transporter
Rpal_1335	SSF75708	Chemotaxis phosphatase CheZ
Rpal_1336	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_1338	SSF88713	Glycoside hydrolase/deacetylase
Rpal_1339	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_1340	SSF53850	Periplasmic binding protein-like II
Rpal_1341	SSF55681	Class II aaRS and biotin synthetases
Rpal_1342	SSF75217	alpha/beta knot
Rpal_1342	SSF88697	PUA domain-like
Rpal_1346	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rpal_1347	SSF56655	Carbohydrate phosphatase
Rpal_1349	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_1350	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1353	SSF51246	Rudiment single hybrid motif
Rpal_1353	SSF52440	PreATP-grasp domain
Rpal_1353	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_1354	SSF53474	alpha/beta-Hydrolases
Rpal_1355	SSF53927	Cytidine deaminase-like
Rpal_1356	SSF55120	Pseudouridine synthase
Rpal_1356	SSF55174	Alpha-L RNA-binding motif
Rpal_1357	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1358	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1359	SSF54690	Molybdopterin synthase subunit MoaE
Rpal_1360	SSF54285	MoaD/ThiS
Rpal_1362	SSF46600	C-terminal UvrC-binding domain of UvrB
Rpal_1362	SSF47781	RuvA domain 2-like
Rpal_1362	SSF82771	GIY-YIG endonuclease
Rpal_1363	SSF56925	OMPA-like
Rpal_1364	SSF50249	Nucleic acid-binding proteins
Rpal_1365	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1366	SSF52172	CheY-like
Rpal_1367	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1368	SSF55331	Tautomerase/MIF
Rpal_1369	SSF52954	Class II aaRS ABD-related
Rpal_1369	SSF55681	Class II aaRS and biotin synthetases
Rpal_1370	SSF53383	PLP-dependent transferases
Rpal_1371	SSF141868	EAL domain-like
Rpal_1372	SSF56784	HAD-like
Rpal_1373	SSF52317	Class I glutamine amidotransferase-like
Rpal_1374	SSF52317	Class I glutamine amidotransferase-like
Rpal_1376	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1378	SSF55811	Nudix
Rpal_1380	SSF81301	Nucleotidyltransferase
Rpal_1380	SSF81891	Poly A polymerase C-terminal region-like
Rpal_1382	SSF102114	Radical SAM enzymes
Rpal_1383	SSF75217	alpha/beta knot
Rpal_1384	SSF50022	ISP domain
Rpal_1385	SSF46626	Cytochrome c
Rpal_1385	SSF81342	Transmembrane di-heme cytochromes
Rpal_1385	SSF81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Rpal_1385	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Rpal_1386	SSF53474	alpha/beta-Hydrolases
Rpal_1388	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1389	SSF50475	FMN-binding split barrel
Rpal_1391	SSF46565	Chaperone J-domain
Rpal_1391	SSF49493	HSP40/DnaJ peptide-binding domain
Rpal_1392	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1393	SSF53254	Phosphoglycerate mutase-like
Rpal_1394	SSF103263	Chorismate synthase, AroC
Rpal_1395	SSF55073	Nucleotide cyclase
Rpal_1396	SSF54736	ClpS-like
Rpal_1397	SSF53300	vWA-like
Rpal_1398	SSF56796	Dehydroquinate synthase-like
Rpal_1399	SSF53720	ALDH-like
Rpal_1400	SSF46689	Homeodomain-like
Rpal_1400	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1400	SSF55781	GAF domain-like
Rpal_1403	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1405	SSF53474	alpha/beta-Hydrolases
Rpal_1407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1408	SSF161098	MetI-like
Rpal_1409	SSF161098	MetI-like
Rpal_1410	SSF53187	Zn-dependent exopeptidases
Rpal_1410	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_1411	SSF53850	Periplasmic binding protein-like II
Rpal_1413	SSF54631	CBS-domain pair
Rpal_1417	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1417	SSF52922	TK C-terminal domain-like
Rpal_1417	SSF54862	4Fe-4S ferredoxins
Rpal_1418	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rpal_1418	SSF54862	4Fe-4S ferredoxins
Rpal_1419	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1419	SSF52922	TK C-terminal domain-like
Rpal_1420	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1421	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rpal_1422	SSF56801	Acetyl-CoA synthetase-like
Rpal_1425	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1426	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1427	SSF56801	Acetyl-CoA synthetase-like
Rpal_1428	SSF53822	Periplasmic binding protein-like I
Rpal_1429	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1429	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1430	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1430	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1431	SSF52096	ClpP/crotonase
Rpal_1434	SSF74653	TolA/TonB C-terminal domain
Rpal_1435	SSF56801	Acetyl-CoA synthetase-like
Rpal_1441	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_1441	SSF52172	CheY-like
Rpal_1442	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1442	SSF52172	CheY-like
Rpal_1442	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1443	SSF53822	Periplasmic binding protein-like I
Rpal_1446	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1447	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1448	SSF141130	Acetamidase/Formamidase-like
Rpal_1452	SSF56784	HAD-like
Rpal_1452	SSF81653	Calcium ATPase, transduction domain A
Rpal_1452	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rpal_1452	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_1453	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1454	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_1454	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_1456	SSF48295	TrpR-like
Rpal_1458	SSF48029	FliG
Rpal_1460	SSF101801	Surface presentation of antigens (SPOA)
Rpal_1461	SSF46689	Homeodomain-like
Rpal_1461	SSF52172	CheY-like
Rpal_1461	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1463	SSF160272	Shew3726-like
Rpal_1465	SSF54001	Cysteine proteinases
Rpal_1466	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1467	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1468	SSF47240	Ferritin-like
Rpal_1469	SSF51182	RmlC-like cupins
Rpal_1470	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
Rpal_1470	SSF52317	Class I glutamine amidotransferase-like
Rpal_1471	SSF53474	alpha/beta-Hydrolases
Rpal_1472	SSF89095	GatB/YqeY motif
Rpal_1474	SSF55961	Bet v1-like
Rpal_1475	SSF46785	"Winged helix" DNA-binding domain
Rpal_1477	SSF53187	Zn-dependent exopeptidases
Rpal_1478	SSF110857	Gamma-glutamyl cyclotransferase-like
Rpal_1480	SSF56731	DNA primase core
Rpal_1480	SSF57783	Zinc beta-ribbon
Rpal_1481	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1481	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1484	SSF47413	lambda repressor-like DNA-binding domains
Rpal_1485	SSF143011	RelE-like
Rpal_1487	SSF158472	HAMP domain-like
Rpal_1487	SSF55073	Nucleotide cyclase
Rpal_1488	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1489	SSF53901	Thiolase-like
Rpal_1490	SSF51182	RmlC-like cupins
Rpal_1491	SSF52317	Class I glutamine amidotransferase-like
Rpal_1493	SSF53955	Lysozyme-like
Rpal_1496	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1497	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1500	SSF56349	DNA breaking-rejoining enzymes
Rpal_1501	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1502	SSF116734	DNA methylase specificity domain
Rpal_1506	SSF47413	lambda repressor-like DNA-binding domains
Rpal_1509	SSF56300	Metallo-dependent phosphatases
Rpal_1511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1512	SSF56349	DNA breaking-rejoining enzymes
Rpal_1514	SSF51395	FMN-linked oxidoreductases
Rpal_1515	SSF69118	AhpD-like
Rpal_1517	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1517	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1517	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1518	SSF52172	CheY-like
Rpal_1519	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_1519	SSF52172	CheY-like
Rpal_1520	SSF53474	alpha/beta-Hydrolases
Rpal_1521	SSF47240	Ferritin-like
Rpal_1523	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1524	SSF46689	Homeodomain-like
Rpal_1525	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1525	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1526	SSF51182	RmlC-like cupins
Rpal_1529	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1529	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1529	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1530	SSF111369	HlyD-like secretion proteins
Rpal_1531	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_1531	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1532	SSF50692	ADC-like
Rpal_1532	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_1535	SSF57850	RING/U-box
Rpal_1537	SSF46689	Homeodomain-like
Rpal_1538	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1542	SSF111369	HlyD-like secretion proteins
Rpal_1543	SSF46689	Homeodomain-like
Rpal_1544	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1544	SSF48452	TPR-like
Rpal_1544	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1544	SSF55781	GAF domain-like
Rpal_1544	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1544	SSF56112	Protein kinase-like (PK-like)
Rpal_1545	SSF48557	L-aspartase-like
Rpal_1547	SSF51182	RmlC-like cupins
Rpal_1548	SSF51905	FAD/NAD(P)-binding domain
Rpal_1549	SSF48208	Six-hairpin glycosidases
Rpal_1550	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_1551	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1551	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1552	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_1553	SSF56801	Acetyl-CoA synthetase-like
Rpal_1554	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1554	SSF52922	TK C-terminal domain-like
Rpal_1554	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rpal_1557	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1558	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1559	SSF53822	Periplasmic binding protein-like I
Rpal_1560	SSF46689	Homeodomain-like
Rpal_1560	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_1563	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1563	SSF90123	ABC transporter transmembrane region
Rpal_1564	SSF141072	CalX-like
Rpal_1564	SSF51120	beta-Roll
Rpal_1564	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Rpal_1564	SSF56219	DNase I-like
Rpal_1564	SSF56300	Metallo-dependent phosphatases
Rpal_1565	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_1565	SSF46785	"Winged helix" DNA-binding domain
Rpal_1566	SSF51120	beta-Roll
Rpal_1566	SSF51695	PLC-like phosphodiesterases
Rpal_1567	SSF53098	Ribonuclease H-like
Rpal_1569	SSF56349	DNA breaking-rejoining enzymes
Rpal_1571	SSF53850	Periplasmic binding protein-like II
Rpal_1572	SSF161098	MetI-like
Rpal_1573	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1574	SSF53649	Alkaline phosphatase-like
Rpal_1575	SSF81296	E set domains
Rpal_1577	SSF51905	FAD/NAD(P)-binding domain
Rpal_1577	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_1578	SSF46626	Cytochrome c
Rpal_1581	SSF55469	FMN-dependent nitroreductase-like
Rpal_1582	SSF53850	Periplasmic binding protein-like II
Rpal_1583	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1584	SSF161098	MetI-like
Rpal_1585	SSF56801	Acetyl-CoA synthetase-like
Rpal_1586	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_1587	SSF75304	Amidase signature (AS) enzymes
Rpal_1588	SSF160467	PH0987 N-terminal domain-like
Rpal_1588	SSF50891	Cyclophilin-like
Rpal_1588	SSF51230	Single hybrid motif
Rpal_1588	SSF51246	Rudiment single hybrid motif
Rpal_1588	SSF52440	PreATP-grasp domain
Rpal_1588	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_1591	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1592	SSF161098	MetI-like
Rpal_1593	SSF53850	Periplasmic binding protein-like II
Rpal_1594	SSF52096	ClpP/crotonase
Rpal_1595	SSF56801	Acetyl-CoA synthetase-like
Rpal_1596	SSF46785	"Winged helix" DNA-binding domain
Rpal_1596	SSF55781	GAF domain-like
Rpal_1597	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1598	SSF53822	Periplasmic binding protein-like I
Rpal_1599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1600	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1603	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1603	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1603	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1604	SSF111369	HlyD-like secretion proteins
Rpal_1608	SSF53383	PLP-dependent transferases
Rpal_1609	SSF51161	Trimeric LpxA-like enzymes
Rpal_1610	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1610	SSF55021	ACT-like
Rpal_1611	SSF161098	MetI-like
Rpal_1612	SSF53850	Periplasmic binding protein-like II
Rpal_1613	SSF56801	Acetyl-CoA synthetase-like
Rpal_1614	SSF53850	Periplasmic binding protein-like II
Rpal_1617	SSF50475	FMN-binding split barrel
Rpal_1618	SSF110857	Gamma-glutamyl cyclotransferase-like
Rpal_1620	SSF53807	"Helical backbone" metal receptor
Rpal_1622	SSF53807	"Helical backbone" metal receptor
Rpal_1623	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1624	SSF46689	Homeodomain-like
Rpal_1624	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1624	SSF55781	GAF domain-like
Rpal_1626	SSF53633	Carbamate kinase-like
Rpal_1627	SSF53633	Carbamate kinase-like
Rpal_1628	SSF46785	"Winged helix" DNA-binding domain
Rpal_1628	SSF48008	GntR ligand-binding domain-like
Rpal_1630	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1631	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1632	SSF53850	Periplasmic binding protein-like II
Rpal_1633	SSF161098	MetI-like
Rpal_1634	SSF161098	MetI-like
Rpal_1635	SSF56801	Acetyl-CoA synthetase-like
Rpal_1636	SSF51230	Single hybrid motif
Rpal_1636	SSF51246	Rudiment single hybrid motif
Rpal_1636	SSF52096	ClpP/crotonase
Rpal_1636	SSF52440	PreATP-grasp domain
Rpal_1636	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_1637	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1639	SSF81452	Cytochrome c oxidase subunit III-like
Rpal_1641	SSF46626	Cytochrome c
Rpal_1642	SSF81442	Cytochrome c oxidase subunit I-like
Rpal_1643	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1644	SSF53300	vWA-like
Rpal_1647	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1648	SSF143975	IlvD/EDD N-terminal domain-like
Rpal_1648	SSF52016	LeuD/IlvD-like
Rpal_1649	SSF52317	Class I glutamine amidotransferase-like
Rpal_1650	SSF54631	CBS-domain pair
Rpal_1650	SSF81340	Clc chloride channel
Rpal_1651	SSF75304	Amidase signature (AS) enzymes
Rpal_1652	SSF46785	"Winged helix" DNA-binding domain
Rpal_1652	SSF48008	GntR ligand-binding domain-like
Rpal_1653	SSF54427	NTF2-like
Rpal_1654	SSF75304	Amidase signature (AS) enzymes
Rpal_1656	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1658	SSF161098	MetI-like
Rpal_1659	SSF161098	MetI-like
Rpal_1660	SSF53850	Periplasmic binding protein-like II
Rpal_1663	SSF53850	Periplasmic binding protein-like II
Rpal_1664	SSF161098	MetI-like
Rpal_1665	SSF161098	MetI-like
Rpal_1666	SSF50331	MOP-like
Rpal_1666	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1667	SSF56300	Metallo-dependent phosphatases
Rpal_1668	SSF52172	CheY-like
Rpal_1669	SSF53474	alpha/beta-Hydrolases
Rpal_1670	SSF51905	FAD/NAD(P)-binding domain
Rpal_1671	SSF53738	Phosphoglucomutase, first 3 domains
Rpal_1671	SSF55957	Phosphoglucomutase, C-terminal domain
Rpal_1675	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_1676	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_1676	SSF52172	CheY-like
Rpal_1677	SSF55781	GAF domain-like
Rpal_1677	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1677	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1678	SSF56918	Light-harvesting complex subunits
Rpal_1679	SSF56918	Light-harvesting complex subunits
Rpal_1680	SSF103473	MFS general substrate transporter
Rpal_1683	SSF51905	FAD/NAD(P)-binding domain
Rpal_1684	SSF111369	HlyD-like secretion proteins
Rpal_1685	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1685	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1685	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1687	SSF47240	Ferritin-like
Rpal_1689	SSF49785	Galactose-binding domain-like
Rpal_1690	SSF53474	alpha/beta-Hydrolases
Rpal_1692	SSF53850	Periplasmic binding protein-like II
Rpal_1692	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Rpal_1693	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1694	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1694	SSF53300	vWA-like
Rpal_1695	SSF141371	PilZ domain-like
Rpal_1696	SSF51726	UROD/MetE-like
Rpal_1697	SSF53474	alpha/beta-Hydrolases
Rpal_1698	SSF53474	alpha/beta-Hydrolases
Rpal_1699	SSF51905	FAD/NAD(P)-binding domain
Rpal_1700	SSF48576	Terpenoid synthases
Rpal_1701	SSF102886	Coproporphyrinogen III oxidase
Rpal_1702	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1705	SSF159245	AttH-like
Rpal_1706	SSF51905	FAD/NAD(P)-binding domain
Rpal_1707	SSF48576	Terpenoid synthases
Rpal_1708	SSF46785	"Winged helix" DNA-binding domain
Rpal_1708	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1709	SSF50129	GroES-like
Rpal_1709	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1710	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1711	SSF53807	"Helical backbone" metal receptor
Rpal_1712	SSF53807	"Helical backbone" metal receptor
Rpal_1714	SSF56918	Light-harvesting complex subunits
Rpal_1715	SSF56918	Light-harvesting complex subunits
Rpal_1716	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
Rpal_1717	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
Rpal_1718	SSF46689	Homeodomain-like
Rpal_1718	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1720	SSF103473	MFS general substrate transporter
Rpal_1721	SSF51905	FAD/NAD(P)-binding domain
Rpal_1724	SSF46626	Cytochrome c
Rpal_1725	SSF46689	Homeodomain-like
Rpal_1725	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1726	SSF55781	GAF domain-like
Rpal_1726	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1727	SSF48613	Heme oxygenase-like
Rpal_1728	SSF52242	Cobalamin (vitamin B12)-binding domain
Rpal_1730	SSF53807	"Helical backbone" metal receptor
Rpal_1731	SSF53807	"Helical backbone" metal receptor
Rpal_1733	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1734	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1735	SSF103473	MFS general substrate transporter
Rpal_1736	SSF50346	PRC-barrel domain
Rpal_1736	SSF81490	Photosystem II reaction centre subunit H, transmembrane region
Rpal_1740	SSF47240	Ferritin-like
Rpal_1742	SSF53383	PLP-dependent transferases
Rpal_1743	SSF46785	"Winged helix" DNA-binding domain
Rpal_1743	SSF53850	Periplasmic binding protein-like II
Rpal_1744	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_1744	SSF52172	CheY-like
Rpal_1745	SSF52172	CheY-like
Rpal_1746	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_1746	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1746	SSF52172	CheY-like
Rpal_1746	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1746	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1747	SSF51649	RuBisCo, C-terminal domain
Rpal_1747	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rpal_1748	SSF55239	RuBisCO, small subunit
Rpal_1749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1750	SSF46785	"Winged helix" DNA-binding domain
Rpal_1750	SSF53850	Periplasmic binding protein-like II
Rpal_1751	SSF56317	Carbon-nitrogen hydrolase
Rpal_1752	SSF53822	Periplasmic binding protein-like I
Rpal_1754	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1755	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1756	SSF53474	alpha/beta-Hydrolases
Rpal_1757	SSF53383	PLP-dependent transferases
Rpal_1758	SSF50993	Peptidase/esterase 'gauge' domain
Rpal_1758	SSF53474	alpha/beta-Hydrolases
Rpal_1759	SSF51569	Aldolase
Rpal_1760	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rpal_1760	SSF56003	Molybdenum cofactor-binding domain
Rpal_1761	SSF140478	LemA-like
Rpal_1764	SSF47616	GST C-terminal domain-like
Rpal_1764	SSF52833	Thioredoxin-like
Rpal_1766	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_1766	SSF63380	Riboflavin synthase domain-like
Rpal_1767	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_1768	SSF51730	FAD-linked oxidoreductase
Rpal_1768	SSF53720	ALDH-like
Rpal_1768	SSF81935	N-terminal domain of bifunctional PutA protein
Rpal_1770	SSF54292	2Fe-2S ferredoxin-like
Rpal_1770	SSF55073	Nucleotide cyclase
Rpal_1770	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rpal_1774	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1776	SSF53383	PLP-dependent transferases
Rpal_1777	SSF55174	Alpha-L RNA-binding motif
Rpal_1778	SSF52777	CoA-dependent acyltransferases
Rpal_1779	SSF51182	RmlC-like cupins
Rpal_1780	SSF53681	Aspartate/glutamate racemase
Rpal_1781	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1782	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_1783	SSF52200	Toll/Interleukin receptor TIR domain
Rpal_1785	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_1786	SSF55326	PurM N-terminal domain-like
Rpal_1786	SSF56042	PurM C-terminal domain-like
Rpal_1789	SSF82657	BolA-like
Rpal_1790	SSF46785	"Winged helix" DNA-binding domain
Rpal_1794	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1795	SSF109854	DinB/YfiT-like putative metalloenzymes
Rpal_1795	SSF56436	C-type lectin-like
Rpal_1796	SSF52833	Thioredoxin-like
Rpal_1797	SSF52949	Macro domain-like
Rpal_1798	SSF56601	beta-lactamase/transpeptidase-like
Rpal_1799	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_1799	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1800	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1801	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_1802	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1802	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1803	SSF48264	Cytochrome P450
Rpal_1804	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1804	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1805	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1807	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_1808	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1815	SSF56655	Carbohydrate phosphatase
Rpal_1817	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_1817	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1817	SSF50341	CheW-like
Rpal_1817	SSF52172	CheY-like
Rpal_1817	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1818	SSF50341	CheW-like
Rpal_1819	SSF52172	CheY-like
Rpal_1820	SSF52172	CheY-like
Rpal_1820	SSF52738	Methylesterase CheB, C-terminal domain
Rpal_1821	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rpal_1821	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1822	SSF52172	CheY-like
Rpal_1823	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1825	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_1825	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_1829	SSF103473	MFS general substrate transporter
Rpal_1830	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_1831	SSF46689	Homeodomain-like
Rpal_1832	SSF47188	Hemerythrin-like
Rpal_1832	SSF55073	Nucleotide cyclase
Rpal_1835	SSF54001	Cysteine proteinases
Rpal_1838	SSF53474	alpha/beta-Hydrolases
Rpal_1839	SSF111369	HlyD-like secretion proteins
Rpal_1841	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1842	SSF53822	Periplasmic binding protein-like I
Rpal_1843	SSF117143	Flagellar hook protein flgE
Rpal_1848	SSF53137	Translational machinery components
Rpal_1849	SSF51430	NAD(P)-linked oxidoreductase
Rpal_1850	SSF53822	Periplasmic binding protein-like I
Rpal_1852	SSF55073	Nucleotide cyclase
Rpal_1854	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rpal_1856	SSF47240	Ferritin-like
Rpal_1856	SSF56784	HAD-like
Rpal_1856	SSF81653	Calcium ATPase, transduction domain A
Rpal_1856	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_1859	SSF53213	LigB-like
Rpal_1860	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_1862	SSF102114	Radical SAM enzymes
Rpal_1863	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport
Rpal_1864	SSF102114	Radical SAM enzymes
Rpal_1866	SSF56300	Metallo-dependent phosphatases
Rpal_1867	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_1867	SSF56112	Protein kinase-like (PK-like)
Rpal_1869	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_1870	SSF52172	CheY-like
Rpal_1871	SSF158472	HAMP domain-like
Rpal_1871	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1871	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_1872	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_1872	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1872	SSF50341	CheW-like
Rpal_1872	SSF52172	CheY-like
Rpal_1872	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1873	SSF50341	CheW-like
Rpal_1874	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rpal_1874	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_1876	SSF141868	EAL domain-like
Rpal_1876	SSF52172	CheY-like
Rpal_1877	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_1877	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1877	SSF52172	CheY-like
Rpal_1877	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1878	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_1878	SSF52172	CheY-like
Rpal_1879	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1880	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1881	SSF103515	Autotransporter
Rpal_1881	SSF51126	Pectin lyase-like
Rpal_1882	SSF51905	FAD/NAD(P)-binding domain
Rpal_1882	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_1883	SSF53720	ALDH-like
Rpal_1884	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_1889	SSF103473	MFS general substrate transporter
Rpal_1890	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
Rpal_1890	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
Rpal_1892	SSF46689	Homeodomain-like
Rpal_1892	SSF51182	RmlC-like cupins
Rpal_1894	SSF50475	FMN-binding split barrel
Rpal_1897	SSF142433	CinA-like
Rpal_1899	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1899	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1900	SSF75304	Amidase signature (AS) enzymes
Rpal_1902	SSF56801	Acetyl-CoA synthetase-like
Rpal_1903	SSF53901	Thiolase-like
Rpal_1904	SSF46689	Homeodomain-like
Rpal_1904	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_1905	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1906	SSF52096	ClpP/crotonase
Rpal_1907	SSF56801	Acetyl-CoA synthetase-like
Rpal_1908	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1908	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1909	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1909	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1910	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1910	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1911	SSF55469	FMN-dependent nitroreductase-like
Rpal_1912	SSF52096	ClpP/crotonase
Rpal_1913	SSF51206	cAMP-binding domain-like
Rpal_1916	SSF55073	Nucleotide cyclase
Rpal_1920	SSF50475	FMN-binding split barrel
Rpal_1921	SSF46785	"Winged helix" DNA-binding domain
Rpal_1921	SSF53850	Periplasmic binding protein-like II
Rpal_1922	SSF51197	Clavaminate synthase-like
Rpal_1923	SSF56801	Acetyl-CoA synthetase-like
Rpal_1924	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1925	SSF53720	ALDH-like
Rpal_1925	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1926	SSF50129	GroES-like
Rpal_1926	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1930	SSF53474	alpha/beta-Hydrolases
Rpal_1930	SSF82784	OsmC-like
Rpal_1931	SSF56524	Oxidoreductase molybdopterin-binding domain
Rpal_1932	SSF48264	Cytochrome P450
Rpal_1933	SSF54862	4Fe-4S ferredoxins
Rpal_1934	SSF75304	Amidase signature (AS) enzymes
Rpal_1935	SSF90123	ABC transporter transmembrane region
Rpal_1936	SSF51445	(Trans)glycosidases
Rpal_1937	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1938	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1941	SSF53822	Periplasmic binding protein-like I
Rpal_1942	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_1944	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1944	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_1945	SSF53187	Zn-dependent exopeptidases
Rpal_1945	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_1946	SSF46785	"Winged helix" DNA-binding domain
Rpal_1946	SSF53850	Periplasmic binding protein-like II
Rpal_1947	SSF160920	PSTPO5379-like
Rpal_1948	SSF53822	Periplasmic binding protein-like I
Rpal_1951	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1952	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1953	SSF51658	Xylose isomerase-like
Rpal_1954	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_1954	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_1954	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_1955	SSF111369	HlyD-like secretion proteins
Rpal_1956	SSF53901	Thiolase-like
Rpal_1957	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1958	SSF52096	ClpP/crotonase
Rpal_1959	SSF56112	Protein kinase-like (PK-like)
Rpal_1962	SSF52096	ClpP/crotonase
Rpal_1963	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_1963	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_1964	SSF56801	Acetyl-CoA synthetase-like
Rpal_1965	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1966	SSF52096	ClpP/crotonase
Rpal_1967	SSF56801	Acetyl-CoA synthetase-like
Rpal_1968	SSF103190	Sensory domain-like
Rpal_1968	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_1968	SSF52172	CheY-like
Rpal_1968	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_1968	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_1969	SSF46785	"Winged helix" DNA-binding domain
Rpal_1969	SSF53850	Periplasmic binding protein-like II
Rpal_1972	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_1973	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_1976	SSF103088	OmpA-like
Rpal_1977	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1978	SSF53901	Thiolase-like
Rpal_1979	SSF50249	Nucleic acid-binding proteins
Rpal_1980	SSF75304	Amidase signature (AS) enzymes
Rpal_1981	SSF56529	FAH
Rpal_1982	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1983	SSF51905	FAD/NAD(P)-binding domain
Rpal_1983	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_1988	SSF52096	ClpP/crotonase
Rpal_1989	SSF56801	Acetyl-CoA synthetase-like
Rpal_1990	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_1991	SSF53822	Periplasmic binding protein-like I
Rpal_1992	SSF55073	Nucleotide cyclase
Rpal_1993	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1994	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_1996	SSF46785	"Winged helix" DNA-binding domain
Rpal_1997	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_1999	SSF55073	Nucleotide cyclase
Rpal_2000	SSF82544	GckA/TtuD-like
Rpal_2001	SSF53822	Periplasmic binding protein-like I
Rpal_2002	SSF52141	Uracil-DNA glycosylase-like
Rpal_2003	SSF102114	Radical SAM enzymes
Rpal_2003	SSF47781	RuvA domain 2-like
Rpal_2004	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2005	SSF56672	DNA/RNA polymerases
Rpal_2007	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2008	SSF46785	"Winged helix" DNA-binding domain
Rpal_2008	SSF53850	Periplasmic binding protein-like II
Rpal_2009	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_2010	SSF111369	HlyD-like secretion proteins
Rpal_2011	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2011	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2011	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2013	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2014	SSF52096	ClpP/crotonase
Rpal_2016	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_2016	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_2019	SSF56935	Porins
Rpal_2021	SSF55073	Nucleotide cyclase
Rpal_2022	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_2022	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_2025	SSF158472	HAMP domain-like
Rpal_2025	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_2027	SSF56935	Porins
Rpal_2029	SSF141371	PilZ domain-like
Rpal_2030	SSF51126	Pectin lyase-like
Rpal_2032	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Rpal_2033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2034	SSF53056	beta-carbonic anhydrase, cab
Rpal_2035	SSF53056	beta-carbonic anhydrase, cab
Rpal_2037	SSF88723	PIN domain-like
Rpal_2038	SSF143120	YefM-like
Rpal_2039	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rpal_2039	SSF52242	Cobalamin (vitamin B12)-binding domain
Rpal_2040	SSF51316	Mss4-like
Rpal_2041	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rpal_2041	SSF52242	Cobalamin (vitamin B12)-binding domain
Rpal_2042	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Rpal_2043	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rpal_2044	SSF51717	Dihydropteroate synthetase-like
Rpal_2047	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2048	SSF53187	Zn-dependent exopeptidases
Rpal_2049	SSF56935	Porins
Rpal_2054	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_2055	SSF53639	AraD/HMP-PK domain-like
Rpal_2058	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2059	SSF46689	Homeodomain-like
Rpal_2059	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2061	SSF82649	SufE/NifU
Rpal_2063	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2063	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2063	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2064	SSF47090	PGBD-like
Rpal_2067	SSF88713	Glycoside hydrolase/deacetylase
Rpal_2072	SSF160935	VPA0735-like
Rpal_2073	SSF53955	Lysozyme-like
Rpal_2073	SSF56601	beta-lactamase/transpeptidase-like
Rpal_2076	SSF46785	"Winged helix" DNA-binding domain
Rpal_2077	SSF48264	Cytochrome P450
Rpal_2078	SSF54292	2Fe-2S ferredoxin-like
Rpal_2079	SSF53822	Periplasmic binding protein-like I
Rpal_2082	SSF56935	Porins
Rpal_2084	SSF56601	beta-lactamase/transpeptidase-like
Rpal_2085	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_2086	SSF103473	MFS general substrate transporter
Rpal_2087	SSF53850	Periplasmic binding protein-like II
Rpal_2091	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2091	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_2095	SSF50789	Herpes virus serine proteinase, assemblin
Rpal_2096	SSF56563	Major capsid protein gp5
Rpal_2098	SSF48371	ARM repeat
Rpal_2099	SSF52949	Macro domain-like
Rpal_2105	SSF50494	Trypsin-like serine proteases
Rpal_2116	SSF54001	Cysteine proteinases
Rpal_2117	SSF51316	Mss4-like
Rpal_2119	SSF46785	"Winged helix" DNA-binding domain
Rpal_2121	SSF81342	Transmembrane di-heme cytochromes
Rpal_2122	SSF51445	(Trans)glycosidases
Rpal_2124	SSF53955	Lysozyme-like
Rpal_2126	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_2126	SSF52172	CheY-like
Rpal_2127	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2130	SSF48452	TPR-like
Rpal_2131	SSF82093	Heme chaperone CcmE
Rpal_2134	SSF56317	Carbon-nitrogen hydrolase
Rpal_2136	SSF103473	MFS general substrate transporter
Rpal_2137	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2138	SSF47240	Ferritin-like
Rpal_2139	SSF47240	Ferritin-like
Rpal_2139	SSF54292	2Fe-2S ferredoxin-like
Rpal_2140	SSF50156	PDZ domain-like
Rpal_2140	SSF50494	Trypsin-like serine proteases
Rpal_2141	SSF52172	CheY-like
Rpal_2142	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2142	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_2143	SSF158472	HAMP domain-like
Rpal_2143	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2143	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2144	SSF81301	Nucleotidyltransferase
Rpal_2144	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rpal_2146	SSF46689	Homeodomain-like
Rpal_2147	SSF103515	Autotransporter
Rpal_2147	SSF52743	Subtilisin-like
Rpal_2148	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2148	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2148	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2149	SSF160240	Cation efflux protein cytoplasmic domain-like
Rpal_2149	SSF161111	Cation efflux protein transmembrane domain-like
Rpal_2150	SSF50129	GroES-like
Rpal_2150	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2151	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_2152	SSF56529	FAH
Rpal_2153	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_2153	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2154	SSF103473	MFS general substrate transporter
Rpal_2155	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_2156	SSF46785	"Winged helix" DNA-binding domain
Rpal_2156	SSF48008	GntR ligand-binding domain-like
Rpal_2158	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_2159	SSF48613	Heme oxygenase-like
Rpal_2161	SSF102114	Radical SAM enzymes
Rpal_2162	SSF111369	HlyD-like secretion proteins
Rpal_2165	SSF46689	Homeodomain-like
Rpal_2165	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2166	SSF50129	GroES-like
Rpal_2166	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2167	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2168	SSF51679	Bacterial luciferase-like
Rpal_2169	SSF46689	Homeodomain-like
Rpal_2169	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2170	SSF111369	HlyD-like secretion proteins
Rpal_2171	SSF111369	HlyD-like secretion proteins
Rpal_2172	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2172	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2172	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2174	SSF52151	FabD/lysophospholipase-like
Rpal_2176	SSF55073	Nucleotide cyclase
Rpal_2177	SSF46689	Homeodomain-like
Rpal_2178	SSF111369	HlyD-like secretion proteins
Rpal_2179	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2179	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2179	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2180	SSF51395	FMN-linked oxidoreductases
Rpal_2181	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2183	SSF50630	Acid proteases
Rpal_2185	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2185	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2186	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_2186	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2187	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rpal_2187	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2191	SSF102114	Radical SAM enzymes
Rpal_2193	SSF56784	HAD-like
Rpal_2194	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_2194	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
Rpal_2196	SSF51905	FAD/NAD(P)-binding domain
Rpal_2196	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_2197	SSF51569	Aldolase
Rpal_2199	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_2199	SSF56317	Carbon-nitrogen hydrolase
Rpal_2201	SSF46689	Homeodomain-like
Rpal_2202	SSF53649	Alkaline phosphatase-like
Rpal_2204	SSF88723	PIN domain-like
Rpal_2205	SSF51182	RmlC-like cupins
Rpal_2208	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_2208	SSF52374	Nucleotidylyl transferase
Rpal_2210	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2211	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rpal_2211	SSF51569	Aldolase
Rpal_2212	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_2213	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_2213	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_2214	SSF46626	Cytochrome c
Rpal_2215	SSF102405	MCP/YpsA-like
Rpal_2216	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2216	SSF90123	ABC transporter transmembrane region
Rpal_2219	SSF89562	RraA-like
Rpal_2221	SSF103088	OmpA-like
Rpal_2223	SSF52821	Rhodanese/Cell cycle control phosphatase
Rpal_2224	SSF53383	PLP-dependent transferases
Rpal_2225	SSF53850	Periplasmic binding protein-like II
Rpal_2227	SSF102114	Radical SAM enzymes
Rpal_2229	SSF50129	GroES-like
Rpal_2229	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2230	SSF53901	Thiolase-like
Rpal_2231	SSF53901	Thiolase-like
Rpal_2232	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_2233	SSF47336	ACP-like
Rpal_2235	SSF110849	ParB/Sulfiredoxin
Rpal_2237	SSF56935	Porins
Rpal_2238	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2239	SSF64288	Chorismate lyase-like
Rpal_2240	SSF56784	HAD-like
Rpal_2241	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2242	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_2242	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_2243	SSF55021	ACT-like
Rpal_2245	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_2246	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_2246	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2247	SSF46785	"Winged helix" DNA-binding domain
Rpal_2247	SSF48008	GntR ligand-binding domain-like
Rpal_2248	SSF53822	Periplasmic binding protein-like I
Rpal_2249	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2250	SSF50993	Peptidase/esterase 'gauge' domain
Rpal_2251	SSF161098	MetI-like
Rpal_2251	SSF53850	Periplasmic binding protein-like II
Rpal_2252	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2254	SSF161098	MetI-like
Rpal_2255	SSF53850	Periplasmic binding protein-like II
Rpal_2256	SSF55811	Nudix
Rpal_2257	SSF102114	Radical SAM enzymes
Rpal_2259	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rpal_2259	SSF51569	Aldolase
Rpal_2272	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2278	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2278	SSF56112	Protein kinase-like (PK-like)
Rpal_2281	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2282	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2286	SSF160240	Cation efflux protein cytoplasmic domain-like
Rpal_2286	SSF161111	Cation efflux protein transmembrane domain-like
Rpal_2288	SSF56300	Metallo-dependent phosphatases
Rpal_2290	SSF46785	"Winged helix" DNA-binding domain
Rpal_2293	SSF56784	HAD-like
Rpal_2293	SSF81653	Calcium ATPase, transduction domain A
Rpal_2293	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_2294	SSF117143	Flagellar hook protein flgE
Rpal_2296	SSF46785	"Winged helix" DNA-binding domain
Rpal_2298	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2299	SSF111369	HlyD-like secretion proteins
Rpal_2300	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2300	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2300	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2312	SSF56300	Metallo-dependent phosphatases
Rpal_2316	SSF50249	Nucleic acid-binding proteins
Rpal_2316	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rpal_2330	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_2330	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Rpal_2331	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2336	SSF56300	Metallo-dependent phosphatases
Rpal_2339	SSF56349	DNA breaking-rejoining enzymes
Rpal_2341	SSF53383	PLP-dependent transferases
Rpal_2341	SSF55904	Ornithine decarboxylase C-terminal domain
Rpal_2342	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2344	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2345	SSF111369	HlyD-like secretion proteins
Rpal_2346	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2346	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2346	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2349	SSF47240	Ferritin-like
Rpal_2350	SSF54862	4Fe-4S ferredoxins
Rpal_2351	SSF49503	Cupredoxins
Rpal_2351	SSF50974	Nitrous oxide reductase, N-terminal domain
Rpal_2352	SSF51126	Pectin lyase-like
Rpal_2353	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2355	SSF160387	NosL/MerB-like
Rpal_2356	SSF143631	ApbE-like
Rpal_2358	SSF64307	SirA-like
Rpal_2362	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2363	SSF52172	CheY-like
Rpal_2364	SSF55781	GAF domain-like
Rpal_2364	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2367	SSF46785	"Winged helix" DNA-binding domain
Rpal_2367	SSF51206	cAMP-binding domain-like
Rpal_2369	SSF47240	Ferritin-like
Rpal_2370	SSF50129	GroES-like
Rpal_2370	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2371	SSF53807	"Helical backbone" metal receptor
Rpal_2372	SSF53790	Tetrapyrrole methylase
Rpal_2373	SSF52317	Class I glutamine amidotransferase-like
Rpal_2373	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2374	SSF53790	Tetrapyrrole methylase
Rpal_2375	SSF159664	CobE/GbiG C-terminal domain-like
Rpal_2376	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2376	SSF53790	Tetrapyrrole methylase
Rpal_2378	SSF53790	Tetrapyrrole methylase
Rpal_2379	SSF53790	Tetrapyrrole methylase
Rpal_2380	SSF63965	Precorrin-8X methylmutase CbiC/CobH
Rpal_2382	SSF103501	Respiratory nitrate reductase 1 gamma chain
Rpal_2383	SSF51905	FAD/NAD(P)-binding domain
Rpal_2383	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rpal_2384	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Rpal_2386	SSF52317	Class I glutamine amidotransferase-like
Rpal_2386	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2387	SSF53790	Tetrapyrrole methylase
Rpal_2388	SSF52317	Class I glutamine amidotransferase-like
Rpal_2389	SSF103473	MFS general substrate transporter
Rpal_2390	SSF52499	Isochorismatase-like hydrolases
Rpal_2392	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_2392	SSF51556	Metallo-dependent hydrolases
Rpal_2394	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_2396	SSF53474	alpha/beta-Hydrolases
Rpal_2397	SSF53474	alpha/beta-Hydrolases
Rpal_2398	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2398	SSF48452	TPR-like
Rpal_2398	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2398	SSF55781	GAF domain-like
Rpal_2398	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2398	SSF56112	Protein kinase-like (PK-like)
Rpal_2399	SSF52172	CheY-like
Rpal_2400	SSF52172	CheY-like
Rpal_2401	SSF46689	Homeodomain-like
Rpal_2402	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2402	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2403	SSF53850	Periplasmic binding protein-like II
Rpal_2404	SSF161098	MetI-like
Rpal_2405	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2406	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2406	SSF55234	Cyanase C-terminal domain
Rpal_2407	SSF160448	PG1857-like
Rpal_2408	SSF52218	Flavoproteins
Rpal_2409	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2410	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_2411	SSF53807	"Helical backbone" metal receptor
Rpal_2413	SSF102114	Radical SAM enzymes
Rpal_2414	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2415	SSF56935	Porins
Rpal_2416	SSF54909	Dimeric alpha+beta barrel
Rpal_2417	SSF144064	Heme iron utilization protein-like
Rpal_2420	SSF74653	TolA/TonB C-terminal domain
Rpal_2425	SSF52096	ClpP/crotonase
Rpal_2427	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2427	SSF52172	CheY-like
Rpal_2427	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2428	SSF46626	Cytochrome c
Rpal_2429	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_2429	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_2430	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_2430	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_2431	SSF47616	GST C-terminal domain-like
Rpal_2431	SSF52833	Thioredoxin-like
Rpal_2432	SSF46689	Homeodomain-like
Rpal_2434	SSF56801	Acetyl-CoA synthetase-like
Rpal_2435	SSF52096	ClpP/crotonase
Rpal_2436	SSF51230	Single hybrid motif
Rpal_2436	SSF51246	Rudiment single hybrid motif
Rpal_2436	SSF52440	PreATP-grasp domain
Rpal_2436	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_2437	SSF52096	ClpP/crotonase
Rpal_2438	SSF56801	Acetyl-CoA synthetase-like
Rpal_2440	SSF56601	beta-lactamase/transpeptidase-like
Rpal_2441	SSF49482	Aromatic compound dioxygenase
Rpal_2442	SSF51430	NAD(P)-linked oxidoreductase
Rpal_2443	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_2444	SSF141868	EAL domain-like
Rpal_2444	SSF55073	Nucleotide cyclase
Rpal_2444	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2445	SSF53720	ALDH-like
Rpal_2448	SSF143975	IlvD/EDD N-terminal domain-like
Rpal_2448	SSF52016	LeuD/IlvD-like
Rpal_2453	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2454	SSF46785	"Winged helix" DNA-binding domain
Rpal_2455	SSF103515	Autotransporter
Rpal_2455	SSF51126	Pectin lyase-like
Rpal_2456	SSF101327	YgfB-like
Rpal_2456	SSF103642	Sec-C motif
Rpal_2457	SSF48592	GroEL equatorial domain-like
Rpal_2457	SSF52029	GroEL apical domain-like
Rpal_2457	SSF54849	GroEL-intermediate domain like
Rpal_2458	SSF50129	GroES-like
Rpal_2462	SSF51649	RuBisCo, C-terminal domain
Rpal_2462	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rpal_2463	SSF51182	RmlC-like cupins
Rpal_2464	SSF141066	ICP-like
Rpal_2466	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2467	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2468	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_2469	SSF54001	Cysteine proteinases
Rpal_2471	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_2472	SSF53218	Molybdenum cofactor biosynthesis proteins
Rpal_2473	SSF53271	PRTase-like
Rpal_2475	SSF51726	UROD/MetE-like
Rpal_2476	SSF47616	GST C-terminal domain-like
Rpal_2476	SSF52833	Thioredoxin-like
Rpal_2477	SSF52833	Thioredoxin-like
Rpal_2478	SSF50129	GroES-like
Rpal_2478	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2479	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_2480	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2481	SSF160996	HI0933 insert domain-like
Rpal_2481	SSF51905	FAD/NAD(P)-binding domain
Rpal_2483	SSF46689	Homeodomain-like
Rpal_2483	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2484	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2486	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_2487	SSF53822	Periplasmic binding protein-like I
Rpal_2488	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rpal_2488	SSF56003	Molybdenum cofactor-binding domain
Rpal_2489	SSF53067	Actin-like ATPase domain
Rpal_2491	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2493	SSF103473	MFS general substrate transporter
Rpal_2495	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_2495	SSF54631	CBS-domain pair
Rpal_2496	SSF50129	GroES-like
Rpal_2496	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2497	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2498	SSF52317	Class I glutamine amidotransferase-like
Rpal_2498	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_2498	SSF54810	GMP synthetase C-terminal dimerisation domain
Rpal_2500	SSF54810	GMP synthetase C-terminal dimerisation domain
Rpal_2503	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2505	SSF88723	PIN domain-like
Rpal_2507	SSF46785	"Winged helix" DNA-binding domain
Rpal_2508	SSF47616	GST C-terminal domain-like
Rpal_2508	SSF52833	Thioredoxin-like
Rpal_2510	SSF50475	FMN-binding split barrel
Rpal_2511	SSF51905	FAD/NAD(P)-binding domain
Rpal_2511	SSF54427	NTF2-like
Rpal_2513	SSF50800	PK beta-barrel domain-like
Rpal_2513	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_2514	SSF52833	Thioredoxin-like
Rpal_2517	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2518	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2522	SSF109755	PhoU-like
Rpal_2524	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2525	SSF143011	RelE-like
Rpal_2526	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_2527	SSF50447	Translation proteins
Rpal_2527	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2527	SSF54980	EF-G C-terminal domain-like
Rpal_2528	SSF48452	TPR-like
Rpal_2530	SSF48452	TPR-like
Rpal_2530	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_2531	SSF55961	Bet v1-like
Rpal_2532	SSF48452	TPR-like
Rpal_2533	SSF56925	OMPA-like
Rpal_2534	SSF55073	Nucleotide cyclase
Rpal_2535	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2535	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2537	SSF46689	Homeodomain-like
Rpal_2537	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2540	SSF64518	Phase 1 flagellin
Rpal_2542	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_2543	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_2544	SSF46689	Homeodomain-like
Rpal_2545	SSF56801	Acetyl-CoA synthetase-like
Rpal_2546	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2547	SSF53901	Thiolase-like
Rpal_2548	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_2548	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_2549	SSF81342	Transmembrane di-heme cytochromes
Rpal_2550	SSF56935	Porins
Rpal_2551	SSF53807	"Helical backbone" metal receptor
Rpal_2552	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_2553	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2554	SSF52317	Class I glutamine amidotransferase-like
Rpal_2555	SSF52317	Class I glutamine amidotransferase-like
Rpal_2557	SSF47175	Cytochromes
Rpal_2558	SSF81342	Transmembrane di-heme cytochromes
Rpal_2559	SSF52096	ClpP/crotonase
Rpal_2560	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_2561	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_2562	SSF53850	Periplasmic binding protein-like II
Rpal_2566	SSF46785	"Winged helix" DNA-binding domain
Rpal_2566	SSF53850	Periplasmic binding protein-like II
Rpal_2567	SSF53383	PLP-dependent transferases
Rpal_2568	SSF53720	ALDH-like
Rpal_2569	SSF53187	Zn-dependent exopeptidases
Rpal_2569	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_2570	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_2571	SSF53850	Periplasmic binding protein-like II
Rpal_2572	SSF161098	MetI-like
Rpal_2573	SSF161098	MetI-like
Rpal_2574	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2575	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_2576	SSF50199	Staphylococcal nuclease
Rpal_2577	SSF56784	HAD-like
Rpal_2577	SSF81653	Calcium ATPase, transduction domain A
Rpal_2583	SSF46785	"Winged helix" DNA-binding domain
Rpal_2584	SSF51905	FAD/NAD(P)-binding domain
Rpal_2585	SSF143975	IlvD/EDD N-terminal domain-like
Rpal_2585	SSF52016	LeuD/IlvD-like
Rpal_2586	SSF103473	MFS general substrate transporter
Rpal_2587	SSF46785	"Winged helix" DNA-binding domain
Rpal_2587	SSF48008	GntR ligand-binding domain-like
Rpal_2588	SSF51182	RmlC-like cupins
Rpal_2589	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2590	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
Rpal_2591	SSF53807	"Helical backbone" metal receptor
Rpal_2592	SSF53807	"Helical backbone" metal receptor
Rpal_2593	SSF53383	PLP-dependent transferases
Rpal_2594	SSF53383	PLP-dependent transferases
Rpal_2595	SSF46785	"Winged helix" DNA-binding domain
Rpal_2595	SSF54909	Dimeric alpha+beta barrel
Rpal_2596	SSF51182	RmlC-like cupins
Rpal_2597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2598	SSF102114	Radical SAM enzymes
Rpal_2599	SSF53146	Nitrogenase accessory factor-like
Rpal_2600	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_2600	SSF54631	CBS-domain pair
Rpal_2601	SSF53383	PLP-dependent transferases
Rpal_2602	SSF51197	Clavaminate synthase-like
Rpal_2603	SSF53850	Periplasmic binding protein-like II
Rpal_2604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2604	SSF55021	ACT-like
Rpal_2605	SSF161098	MetI-like
Rpal_2606	SSF53383	PLP-dependent transferases
Rpal_2607	SSF53807	"Helical backbone" metal receptor
Rpal_2608	SSF53807	"Helical backbone" metal receptor
Rpal_2609	SSF53383	PLP-dependent transferases
Rpal_2611	SSF158472	HAMP domain-like
Rpal_2611	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2611	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2612	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_2612	SSF52172	CheY-like
Rpal_2614	SSF111369	HlyD-like secretion proteins
Rpal_2616	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2620	SSF56935	Porins
Rpal_2621	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2622	SSF56935	Porins
Rpal_2624	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2625	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_2626	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rpal_2627	SSF53807	"Helical backbone" metal receptor
Rpal_2628	SSF51658	Xylose isomerase-like
Rpal_2629	SSF47336	ACP-like
Rpal_2630	SSF56801	Acetyl-CoA synthetase-like
Rpal_2633	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_2633	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_2634	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2634	SSF90123	ABC transporter transmembrane region
Rpal_2636	SSF56935	Porins
Rpal_2637	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2638	SSF47240	Ferritin-like
Rpal_2639	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
Rpal_2639	SSF51998	PFL-like glycyl radical enzymes
Rpal_2640	SSF102114	Radical SAM enzymes
Rpal_2642	SSF51998	PFL-like glycyl radical enzymes
Rpal_2644	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2645	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_2646	SSF103378	2-methylcitrate dehydratase PrpD
Rpal_2647	SSF48256	Citrate synthase
Rpal_2648	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_2650	SSF51726	UROD/MetE-like
Rpal_2651	SSF56935	Porins
Rpal_2656	SSF46689	Homeodomain-like
Rpal_2658	SSF101478	ADP-ribosylglycohydrolase
Rpal_2661	SSF53822	Periplasmic binding protein-like I
Rpal_2662	SSF52172	CheY-like
Rpal_2663	SSF53822	Periplasmic binding protein-like I
Rpal_2666	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2667	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2668	SSF141130	Acetamidase/Formamidase-like
Rpal_2669	SSF56317	Carbon-nitrogen hydrolase
Rpal_2670	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2671	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2672	SSF53850	Periplasmic binding protein-like II
Rpal_2673	SSF161098	MetI-like
Rpal_2675	SSF46689	Homeodomain-like
Rpal_2675	SSF52317	Class I glutamine amidotransferase-like
Rpal_2676	SSF52499	Isochorismatase-like hydrolases
Rpal_2680	SSF161098	MetI-like
Rpal_2681	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2681	SSF55021	ACT-like
Rpal_2682	SSF53850	Periplasmic binding protein-like II
Rpal_2683	SSF51905	FAD/NAD(P)-binding domain
Rpal_2683	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_2684	SSF56801	Acetyl-CoA synthetase-like
Rpal_2685	SSF52096	ClpP/crotonase
Rpal_2686	SSF53850	Periplasmic binding protein-like II
Rpal_2687	SSF161098	MetI-like
Rpal_2688	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2690	SSF46785	"Winged helix" DNA-binding domain
Rpal_2691	SSF48371	ARM repeat
Rpal_2694	SSF52096	ClpP/crotonase
Rpal_2697	SSF48435	Bacterial muramidases
Rpal_2697	SSF53955	Lysozyme-like
Rpal_2700	SSF52317	Class I glutamine amidotransferase-like
Rpal_2701	SSF46689	Homeodomain-like
Rpal_2701	SSF52317	Class I glutamine amidotransferase-like
Rpal_2702	SSF51445	(Trans)glycosidases
Rpal_2703	SSF53474	alpha/beta-Hydrolases
Rpal_2705	SSF50494	Trypsin-like serine proteases
Rpal_2707	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2709	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2710	SSF52172	CheY-like
Rpal_2710	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2711	SSF52172	CheY-like
Rpal_2712	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2712	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2713	SSF51246	Rudiment single hybrid motif
Rpal_2713	SSF52440	PreATP-grasp domain
Rpal_2713	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_2714	SSF51230	Single hybrid motif
Rpal_2715	SSF52304	Type II 3-dehydroquinate dehydratase
Rpal_2718	SSF161111	Cation efflux protein transmembrane domain-like
Rpal_2719	SSF46689	Homeodomain-like
Rpal_2719	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_2720	SSF52833	Thioredoxin-like
Rpal_2721	SSF52833	Thioredoxin-like
Rpal_2723	SSF48452	TPR-like
Rpal_2724	SSF53383	PLP-dependent transferases
Rpal_2726	SSF118215	Proton glutamate symport protein
Rpal_2728	SSF50249	Nucleic acid-binding proteins
Rpal_2729	SSF53187	Zn-dependent exopeptidases
Rpal_2730	SSF53955	Lysozyme-like
Rpal_2730	SSF56601	beta-lactamase/transpeptidase-like
Rpal_2732	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_2732	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2733	SSF51261	Duplicated hybrid motif
Rpal_2734	SSF52833	Thioredoxin-like
Rpal_2736	SSF81342	Transmembrane di-heme cytochromes
Rpal_2737	SSF103473	MFS general substrate transporter
Rpal_2738	SSF52374	Nucleotidylyl transferase
Rpal_2738	SSF55174	Alpha-L RNA-binding motif
Rpal_2739	SSF53067	Actin-like ATPase domain
Rpal_2740	SSF53474	alpha/beta-Hydrolases
Rpal_2741	SSF53383	PLP-dependent transferases
Rpal_2742	SSF101960	Stabilizer of iron transporter SufD
Rpal_2743	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2744	SSF101960	Stabilizer of iron transporter SufD
Rpal_2745	SSF53383	PLP-dependent transferases
Rpal_2746	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rpal_2747	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_2748	SSF89360	HesB-like domain
Rpal_2750	SSF51905	FAD/NAD(P)-binding domain
Rpal_2751	SSF55298	YjgF-like
Rpal_2752	SSF48452	TPR-like
Rpal_2753	SSF159894	YgaC/TfoX-N like
Rpal_2754	SSF55073	Nucleotide cyclase
Rpal_2755	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2756	SSF46689	Homeodomain-like
Rpal_2757	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_2758	SSF52129	Caspase-like
Rpal_2759	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2760	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2763	SSF143011	RelE-like
Rpal_2764	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2765	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_2765	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2765	SSF56719	Type II DNA topoisomerase
Rpal_2767	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_2769	SSF50475	FMN-binding split barrel
Rpal_2770	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2770	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_2771	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2772	SSF102114	Radical SAM enzymes
Rpal_2774	SSF55298	YjgF-like
Rpal_2775	SSF46785	"Winged helix" DNA-binding domain
Rpal_2775	SSF48008	GntR ligand-binding domain-like
Rpal_2776	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2777	SSF161098	MetI-like
Rpal_2778	SSF53850	Periplasmic binding protein-like II
Rpal_2779	SSF75304	Amidase signature (AS) enzymes
Rpal_2780	SSF53474	alpha/beta-Hydrolases
Rpal_2782	SSF53383	PLP-dependent transferases
Rpal_2783	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2783	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_2784	SSF56655	Carbohydrate phosphatase
Rpal_2785	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2786	SSF56784	HAD-like
Rpal_2787	SSF64182	DHH phosphoesterases
Rpal_2790	SSF47090	PGBD-like
Rpal_2790	SSF53955	Lysozyme-like
Rpal_2791	SSF111331	NAD kinase/diacylglycerol kinase-like
Rpal_2792	SSF50104	Translation proteins SH3-like domain
Rpal_2792	SSF50249	Nucleic acid-binding proteins
Rpal_2793	SSF55681	Class II aaRS and biotin synthetases
Rpal_2794	SSF102114	Radical SAM enzymes
Rpal_2798	SSF141371	PilZ domain-like
Rpal_2799	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_2800	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_2801	SSF50249	Nucleic acid-binding proteins
Rpal_2803	SSF46785	"Winged helix" DNA-binding domain
Rpal_2805	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_2808	SSF52096	ClpP/crotonase
Rpal_2809	SSF51230	Single hybrid motif
Rpal_2809	SSF51246	Rudiment single hybrid motif
Rpal_2809	SSF52440	PreATP-grasp domain
Rpal_2809	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_2810	SSF51569	Aldolase
Rpal_2815	SSF56925	OMPA-like
Rpal_2815	SSF69917	OMPT-like
Rpal_2816	SSF54534	FKBP-like
Rpal_2823	SSF48239	Terpenoid cyclases/Protein prenyltransferases
Rpal_2824	SSF53955	Lysozyme-like
Rpal_2824	SSF56601	beta-lactamase/transpeptidase-like
Rpal_2826	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rpal_2827	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_2830	SSF48403	Ankyrin repeat
Rpal_2831	SSF53383	PLP-dependent transferases
Rpal_2832	SSF53850	Periplasmic binding protein-like II
Rpal_2833	SSF161098	MetI-like
Rpal_2834	SSF161098	MetI-like
Rpal_2835	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2837	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_2838	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2840	SSF51905	FAD/NAD(P)-binding domain
Rpal_2841	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2842	SSF111369	HlyD-like secretion proteins
Rpal_2843	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2843	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2843	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2844	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_2844	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_2844	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_2847	SSF52266	SGNH hydrolase
Rpal_2850	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_2851	SSF56954	Outer membrane efflux proteins (OEP)
Rpal_2853	SSF46589	tRNA-binding arm
Rpal_2853	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_2853	SSF50677	ValRS/IleRS/LeuRS editing domain
Rpal_2853	SSF52374	Nucleotidylyl transferase
Rpal_2854	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_2856	SSF50486	FMT C-terminal domain-like
Rpal_2857	SSF102114	Radical SAM enzymes
Rpal_2858	SSF55961	Bet v1-like
Rpal_2859	SSF142433	CinA-like
Rpal_2860	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_2860	SSF69765	IpsF-like
Rpal_2861	SSF51395	FMN-linked oxidoreductases
Rpal_2862	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2862	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2862	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2863	SSF46689	Homeodomain-like
Rpal_2863	SSF52172	CheY-like
Rpal_2863	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2864	SSF158472	HAMP domain-like
Rpal_2864	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_2864	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_2864	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_2865	SSF46689	Homeodomain-like
Rpal_2865	SSF52172	CheY-like
Rpal_2865	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2866	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rpal_2867	SSF50182	Sm-like ribonucleoproteins
Rpal_2868	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2869	SSF101904	GyrA/ParC C-terminal domain-like
Rpal_2869	SSF56719	Type II DNA topoisomerase
Rpal_2871	SSF52374	Nucleotidylyl transferase
Rpal_2872	SSF50891	Cyclophilin-like
Rpal_2873	SSF74653	TolA/TonB C-terminal domain
Rpal_2874	SSF50891	Cyclophilin-like
Rpal_2875	SSF111337	QueA-like
Rpal_2876	SSF51713	tRNA-guanine transglycosylase
Rpal_2877	SSF47413	lambda repressor-like DNA-binding domains
Rpal_2877	SSF51182	RmlC-like cupins
Rpal_2879	SSF53850	Periplasmic binding protein-like II
Rpal_2880	SSF50475	FMN-binding split barrel
Rpal_2881	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2882	SSF161098	MetI-like
Rpal_2883	SSF51679	Bacterial luciferase-like
Rpal_2884	SSF53850	Periplasmic binding protein-like II
Rpal_2885	SSF102114	Radical SAM enzymes
Rpal_2886	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2887	SSF53807	"Helical backbone" metal receptor
Rpal_2888	SSF53807	"Helical backbone" metal receptor
Rpal_2889	SSF53850	Periplasmic binding protein-like II
Rpal_2890	SSF51905	FAD/NAD(P)-binding domain
Rpal_2890	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_2891	SSF54909	Dimeric alpha+beta barrel
Rpal_2892	SSF82784	OsmC-like
Rpal_2893	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2894	SSF161098	MetI-like
Rpal_2895	SSF53850	Periplasmic binding protein-like II
Rpal_2896	SSF53383	PLP-dependent transferases
Rpal_2897	SSF53474	alpha/beta-Hydrolases
Rpal_2898	SSF53474	alpha/beta-Hydrolases
Rpal_2899	SSF53850	Periplasmic binding protein-like II
Rpal_2900	SSF161098	MetI-like
Rpal_2901	SSF161098	MetI-like
Rpal_2902	SSF53850	Periplasmic binding protein-like II
Rpal_2903	SSF161098	MetI-like
Rpal_2904	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2906	SSF102114	Radical SAM enzymes
Rpal_2907	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2908	SSF53807	"Helical backbone" metal receptor
Rpal_2909	SSF53807	"Helical backbone" metal receptor
Rpal_2910	SSF51905	FAD/NAD(P)-binding domain
Rpal_2912	SSF52499	Isochorismatase-like hydrolases
Rpal_2913	SSF53850	Periplasmic binding protein-like II
Rpal_2914	SSF46785	"Winged helix" DNA-binding domain
Rpal_2914	SSF53850	Periplasmic binding protein-like II
Rpal_2915	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2916	SSF161098	MetI-like
Rpal_2917	SSF161098	MetI-like
Rpal_2918	SSF53850	Periplasmic binding protein-like II
Rpal_2919	SSF53187	Zn-dependent exopeptidases
Rpal_2919	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_2920	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_2923	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_2924	SSF55298	YjgF-like
Rpal_2926	SSF56918	Light-harvesting complex subunits
Rpal_2927	SSF56918	Light-harvesting complex subunits
Rpal_2928	SSF51445	(Trans)glycosidases
Rpal_2928	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_2930	SSF51445	(Trans)glycosidases
Rpal_2933	SSF51161	Trimeric LpxA-like enzymes
Rpal_2933	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_2934	SSF53697	SIS domain
Rpal_2934	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_2936	SSF50249	Nucleic acid-binding proteins
Rpal_2936	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2937	SSF109910	YgfY-like
Rpal_2938	SSF141259	CarD-like
Rpal_2938	SSF143517	TRCF domain-like
Rpal_2938	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2940	SSF56801	Acetyl-CoA synthetase-like
Rpal_2941	SSF53850	Periplasmic binding protein-like II
Rpal_2943	SSF81301	Nucleotidyltransferase
Rpal_2944	SSF141255	YccV-like
Rpal_2946	SSF51905	FAD/NAD(P)-binding domain
Rpal_2949	SSF50129	GroES-like
Rpal_2949	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2950	SSF102114	Radical SAM enzymes
Rpal_2951	SSF46785	"Winged helix" DNA-binding domain
Rpal_2951	SSF53850	Periplasmic binding protein-like II
Rpal_2952	SSF53850	Periplasmic binding protein-like II
Rpal_2953	SSF161098	MetI-like
Rpal_2954	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2955	SSF53474	alpha/beta-Hydrolases
Rpal_2956	SSF88713	Glycoside hydrolase/deacetylase
Rpal_2957	SSF50891	Cyclophilin-like
Rpal_2958	SSF160467	PH0987 N-terminal domain-like
Rpal_2958	SSF50891	Cyclophilin-like
Rpal_2959	SSF89562	RraA-like
Rpal_2960	SSF51182	RmlC-like cupins
Rpal_2961	SSF51569	Aldolase
Rpal_2962	SSF81330	Gated mechanosensitive channel
Rpal_2963	SSF74982	Small protein B (SmpB)
Rpal_2964	SSF52833	Thioredoxin-like
Rpal_2965	SSF52141	Uracil-DNA glycosylase-like
Rpal_2967	SSF63562	RPB6/omega subunit-like
Rpal_2968	SSF109604	HD-domain/PDEase-like
Rpal_2968	SSF55021	ACT-like
Rpal_2968	SSF81271	TGS-like
Rpal_2968	SSF81301	Nucleotidyltransferase
Rpal_2969	SSF63892	Pyridoxine 5'-phosphate synthase
Rpal_2970	SSF56214	4'-phosphopantetheinyl transferase
Rpal_2971	SSF51306	LexA/Signal peptidase
Rpal_2972	SSF54768	dsRNA-binding domain-like
Rpal_2972	SSF69065	RNase III domain-like
Rpal_2973	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_2973	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rpal_2975	SSF50249	Nucleic acid-binding proteins
Rpal_2975	SSF57863	ArfGap/RecO-like zinc finger
Rpal_2976	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_2977	SSF46785	"Winged helix" DNA-binding domain
Rpal_2978	SSF101904	GyrA/ParC C-terminal domain-like
Rpal_2978	SSF56719	Type II DNA topoisomerase
Rpal_2982	SSF46689	Homeodomain-like
Rpal_2982	SSF51182	RmlC-like cupins
Rpal_2985	SSF111369	HlyD-like secretion proteins
Rpal_2986	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_2988	SSF51569	Aldolase
Rpal_2990	SSF56801	Acetyl-CoA synthetase-like
Rpal_2991	SSF46785	"Winged helix" DNA-binding domain
Rpal_2995	SSF46458	Globin-like
Rpal_2996	SSF47616	GST C-terminal domain-like
Rpal_2996	SSF52833	Thioredoxin-like
Rpal_2998	SSF55781	GAF domain-like
Rpal_2999	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3004	SSF53383	PLP-dependent transferases
Rpal_3006	SSF53597	Dihydrofolate reductase-like
Rpal_3006	SSF53927	Cytidine deaminase-like
Rpal_3007	SSF63380	Riboflavin synthase domain-like
Rpal_3008	SSF52121	Lumazine synthase
Rpal_3009	SSF48013	NusB-like
Rpal_3011	SSF55326	PurM N-terminal domain-like
Rpal_3011	SSF56042	PurM C-terminal domain-like
Rpal_3015	SSF53474	alpha/beta-Hydrolases
Rpal_3019	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_3020	SSF53901	Thiolase-like
Rpal_3021	SSF47729	IHF-like DNA-binding proteins
Rpal_3022	SSF46955	Putative DNA-binding domain
Rpal_3025	SSF56349	DNA breaking-rejoining enzymes
Rpal_3030	SSF103370	NinB
Rpal_3031	SSF46565	Chaperone J-domain
Rpal_3032	SSF52980	Restriction endonuclease-like
Rpal_3044	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3044	SSF51306	LexA/Signal peptidase
Rpal_3048	SSF48295	TrpR-like
Rpal_3057	SSF56784	HAD-like
Rpal_3074	SSF53955	Lysozyme-like
Rpal_3075	SSF88874	Receptor-binding domain of short tail fibre protein gp12
Rpal_3077	SSF53955	Lysozyme-like
Rpal_3084	SSF56935	Porins
Rpal_3087	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3089	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3090	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3091	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3092	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3093	SSF88713	Glycoside hydrolase/deacetylase
Rpal_3094	SSF47240	Ferritin-like
Rpal_3098	SSF46689	Homeodomain-like
Rpal_3098	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3099	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_3099	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_3100	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3102	SSF53383	PLP-dependent transferases
Rpal_3103	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3104	SSF52096	ClpP/crotonase
Rpal_3105	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3106	SSF52161	Ribosomal protein L13
Rpal_3107	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_3108	SSF55073	Nucleotide cyclase
Rpal_3109	SSF54909	Dimeric alpha+beta barrel
Rpal_3111	SSF50685	Barwin-like endoglucanases
Rpal_3112	SSF53474	alpha/beta-Hydrolases
Rpal_3113	SSF56601	beta-lactamase/transpeptidase-like
Rpal_3113	SSF69189	Penicillin-binding protein associated domain
Rpal_3114	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3115	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3116	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_3116	SSF52374	Nucleotidylyl transferase
Rpal_3117	SSF51556	Metallo-dependent hydrolases
Rpal_3118	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_3119	SSF56801	Acetyl-CoA synthetase-like
Rpal_3123	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_3123	SSF63380	Riboflavin synthase domain-like
Rpal_3126	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3127	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3134	SSF51419	PLP-binding barrel
Rpal_3135	SSF53383	PLP-dependent transferases
Rpal_3136	SSF46785	"Winged helix" DNA-binding domain
Rpal_3136	SSF53383	PLP-dependent transferases
Rpal_3138	SSF53613	Ribokinase-like
Rpal_3142	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3143	SSF54909	Dimeric alpha+beta barrel
Rpal_3144	SSF56935	Porins
Rpal_3145	SSF56209	Nitrile hydratase alpha chain
Rpal_3146	SSF50090	Electron transport accessory proteins
Rpal_3147	SSF50090	Electron transport accessory proteins
Rpal_3148	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3149	SSF56601	beta-lactamase/transpeptidase-like
Rpal_3150	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_3151	SSF101386	all-alpha NTP pyrophosphatases
Rpal_3152	SSF54631	CBS-domain pair
Rpal_3152	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_3154	SSF50249	Nucleic acid-binding proteins
Rpal_3155	SSF56925	OMPA-like
Rpal_3156	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3160	SSF46689	Homeodomain-like
Rpal_3161	SSF81324	Voltage-gated potassium channels
Rpal_3163	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3164	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3165	SSF158634	RPA2825-like
Rpal_3168	SSF51905	FAD/NAD(P)-binding domain
Rpal_3169	SSF48576	Terpenoid synthases
Rpal_3170	SSF64076	MTH938-like
Rpal_3171	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_3172	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_3174	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3175	SSF56925	OMPA-like
Rpal_3175	SSF69917	OMPT-like
Rpal_3177	SSF48452	TPR-like
Rpal_3177	SSF53474	alpha/beta-Hydrolases
Rpal_3178	SSF51261	Duplicated hybrid motif
Rpal_3178	SSF54106	LysM domain
Rpal_3179	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3180	SSF52172	CheY-like
Rpal_3181	SSF81301	Nucleotidyltransferase
Rpal_3182	SSF64167	SurE-like
Rpal_3184	SSF55797	PR-1-like
Rpal_3185	SSF46589	tRNA-binding arm
Rpal_3185	SSF55681	Class II aaRS and biotin synthetases
Rpal_3186	SSF103515	Autotransporter
Rpal_3190	SSF46785	"Winged helix" DNA-binding domain
Rpal_3192	SSF51445	(Trans)glycosidases
Rpal_3193	SSF110997	Sporulation related repeat
Rpal_3194	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_3194	SSF52374	Nucleotidylyl transferase
Rpal_3194	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Rpal_3195	SSF109604	HD-domain/PDEase-like
Rpal_3196	SSF89360	HesB-like domain
Rpal_3197	SSF103190	Sensory domain-like
Rpal_3198	SSF63712	Nicotinic receptor ligand binding domain-like
Rpal_3201	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3202	SSF56219	DNase I-like
Rpal_3203	SSF81901	HCP-like
Rpal_3205	SSF51905	FAD/NAD(P)-binding domain
Rpal_3205	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_3206	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rpal_3206	SSF51230	Single hybrid motif
Rpal_3206	SSF52777	CoA-dependent acyltransferases
Rpal_3208	SSF51230	Single hybrid motif
Rpal_3208	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_3208	SSF52922	TK C-terminal domain-like
Rpal_3209	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_3211	SSF52218	Flavoproteins
Rpal_3212	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_3215	SSF50129	GroES-like
Rpal_3215	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3216	SSF51604	Enolase C-terminal domain-like
Rpal_3216	SSF54826	Enolase N-terminal domain-like
Rpal_3217	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rpal_3219	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_3220	SSF74650	Galactose mutarotase-like
Rpal_3220	SSF81296	E set domains
Rpal_3221	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_3222	SSF103473	MFS general substrate transporter
Rpal_3223	SSF51569	Aldolase
Rpal_3224	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_3225	SSF54909	Dimeric alpha+beta barrel
Rpal_3231	SSF52317	Class I glutamine amidotransferase-like
Rpal_3231	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3233	SSF51351	Triosephosphate isomerase (TIM)
Rpal_3234	SSF109998	Triger factor/SurA peptide-binding domain-like
Rpal_3234	SSF54534	FKBP-like
Rpal_3235	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rpal_3235	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rpal_3236	SSF51366	Ribulose-phoshate binding barrel
Rpal_3237	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
Rpal_3238	SSF56784	HAD-like
Rpal_3238	SSF81653	Calcium ATPase, transduction domain A
Rpal_3238	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rpal_3238	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_3241	SSF49764	HSP20-like chaperones
Rpal_3242	SSF141371	PilZ domain-like
Rpal_3243	SSF103088	OmpA-like
Rpal_3244	SSF56784	HAD-like
Rpal_3245	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3248	SSF53218	Molybdenum cofactor biosynthesis proteins
Rpal_3248	SSF63867	MoeA C-terminal domain-like
Rpal_3248	SSF63882	MoeA N-terminal region -like
Rpal_3249	SSF46785	"Winged helix" DNA-binding domain
Rpal_3249	SSF51306	LexA/Signal peptidase
Rpal_3251	SSF50715	Ribosomal protein L25-like
Rpal_3251	SSF52374	Nucleotidylyl transferase
Rpal_3252	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rpal_3252	SSF52374	Nucleotidylyl transferase
Rpal_3253	SSF48256	Citrate synthase
Rpal_3254	SSF53927	Cytidine deaminase-like
Rpal_3255	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3257	SSF51161	Trimeric LpxA-like enzymes
Rpal_3258	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3259	SSF51161	Trimeric LpxA-like enzymes
Rpal_3261	SSF50156	PDZ domain-like
Rpal_3262	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3262	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_3262	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Rpal_3264	SSF64005	Undecaprenyl diphosphate synthase
Rpal_3265	SSF55194	Ribosome recycling factor, RRF
Rpal_3266	SSF53633	Carbamate kinase-like
Rpal_3267	SSF46934	UBA-like
Rpal_3267	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
Rpal_3268	SSF52313	Ribosomal protein S2
Rpal_3269	SSF52129	Caspase-like
Rpal_3270	SSF160975	AF1531-like
Rpal_3270	SSF89550	PHP domain-like
Rpal_3274	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3276	SSF52954	Class II aaRS ABD-related
Rpal_3276	SSF55681	Class II aaRS and biotin synthetases
Rpal_3277	SSF81296	E set domains
Rpal_3279	SSF110087	DR1885-like metal-binding protein
Rpal_3282	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_3283	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_3284	SSF50037	C-terminal domain of transcriptional repressors
Rpal_3284	SSF55681	Class II aaRS and biotin synthetases
Rpal_3290	SSF54862	4Fe-4S ferredoxins
Rpal_3292	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_3292	SSF54292	2Fe-2S ferredoxin-like
Rpal_3292	SSF54862	4Fe-4S ferredoxins
Rpal_3293	SSF140490	Nqo1C-terminal domain-like
Rpal_3293	SSF142019	Nqo1 FMN-binding domain-like
Rpal_3293	SSF142984	Nqo1 middle domain-like
Rpal_3295	SSF52833	Thioredoxin-like
Rpal_3296	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3297	SSF56762	HydB/Nqo4-like
Rpal_3298	SSF143243	Nqo5-like
Rpal_3299	SSF56770	HydA/Nqo6-like
Rpal_3302	SSF47729	IHF-like DNA-binding proteins
Rpal_3303	SSF53187	Zn-dependent exopeptidases
Rpal_3303	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_3304	SSF111369	HlyD-like secretion proteins
Rpal_3305	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_3305	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_3305	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_3306	SSF141868	EAL domain-like
Rpal_3306	SSF55073	Nucleotide cyclase
Rpal_3306	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3307	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3307	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_3307	SSF88697	PUA domain-like
Rpal_3308	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3308	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_3309	SSF52096	ClpP/crotonase
Rpal_3310	SSF102735	Trigger factor ribosome-binding domain
Rpal_3310	SSF109998	Triger factor/SurA peptide-binding domain-like
Rpal_3310	SSF54534	FKBP-like
Rpal_3311	SSF46785	"Winged helix" DNA-binding domain
Rpal_3312	SSF49503	Cupredoxins
Rpal_3313	SSF53613	Ribokinase-like
Rpal_3313	SSF64153	YjeF N-terminal domain-like
Rpal_3314	SSF54913	GlnB-like
Rpal_3315	SSF54368	Glutamine synthetase, N-terminal domain
Rpal_3315	SSF55931	Glutamine synthetase/guanido kinase
Rpal_3316	SSF46689	Homeodomain-like
Rpal_3316	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3318	SSF53383	PLP-dependent transferases
Rpal_3319	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3320	SSF53383	PLP-dependent transferases
Rpal_3322	SSF75304	Amidase signature (AS) enzymes
Rpal_3323	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3323	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_3324	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_3325	SSF51998	PFL-like glycyl radical enzymes
Rpal_3325	SSF75625	YebC-like
Rpal_3326	SSF53927	Cytidine deaminase-like
Rpal_3343	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3355	SSF160059	PriA/YqbF domain
Rpal_3360	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3360	SSF51306	LexA/Signal peptidase
Rpal_3361	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3365	SSF46955	Putative DNA-binding domain
Rpal_3365	SSF53098	Ribonuclease H-like
Rpal_3367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3372	SSF161266	Gam-like
Rpal_3373	SSF46785	"Winged helix" DNA-binding domain
Rpal_3374	SSF48295	TrpR-like
Rpal_3381	SSF46689	Homeodomain-like
Rpal_3382	SSF53955	Lysozyme-like
Rpal_3389	SSF88697	PUA domain-like
Rpal_3395	SSF55331	Tautomerase/MIF
Rpal_3396	SSF53474	alpha/beta-Hydrolases
Rpal_3397	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3398	SSF50129	GroES-like
Rpal_3398	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3403	SSF46785	"Winged helix" DNA-binding domain
Rpal_3403	SSF53850	Periplasmic binding protein-like II
Rpal_3407	SSF51569	Aldolase
Rpal_3408	SSF55804	Phoshotransferase/anion transport protein
Rpal_3409	SSF52172	CheY-like
Rpal_3410	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_3410	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_3410	SSF55781	GAF domain-like
Rpal_3410	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3412	SSF56784	HAD-like
Rpal_3412	SSF81653	Calcium ATPase, transduction domain A
Rpal_3412	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rpal_3412	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_3418	SSF56918	Light-harvesting complex subunits
Rpal_3419	SSF56918	Light-harvesting complex subunits
Rpal_3421	SSF56918	Light-harvesting complex subunits
Rpal_3422	SSF56918	Light-harvesting complex subunits
Rpal_3423	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_3423	SSF52172	CheY-like
Rpal_3424	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_3424	SSF55781	GAF domain-like
Rpal_3424	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3424	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3425	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_3425	SSF55781	GAF domain-like
Rpal_3425	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3425	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3426	SSF52172	CheY-like
Rpal_3427	SSF52172	CheY-like
Rpal_3427	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3428	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_3428	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_3428	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_3429	SSF111369	HlyD-like secretion proteins
Rpal_3430	SSF46689	Homeodomain-like
Rpal_3430	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3432	SSF51430	NAD(P)-linked oxidoreductase
Rpal_3437	SSF81901	HCP-like
Rpal_3440	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3441	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3442	SSF53187	Zn-dependent exopeptidases
Rpal_3442	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_3448	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_3449	SSF88713	Glycoside hydrolase/deacetylase
Rpal_3450	SSF53597	Dihydrofolate reductase-like
Rpal_3452	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3452	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rpal_3452	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_3453	SSF50249	Nucleic acid-binding proteins
Rpal_3453	SSF55261	GAD domain-like
Rpal_3453	SSF55681	Class II aaRS and biotin synthetases
Rpal_3455	SSF47819	HRDC-like
Rpal_3455	SSF53098	Ribonuclease H-like
Rpal_3457	SSF109604	HD-domain/PDEase-like
Rpal_3457	SSF53067	Actin-like ATPase domain
Rpal_3458	SSF140356	PPK N-terminal domain-like
Rpal_3458	SSF143724	PHP14-like
Rpal_3458	SSF56024	Phospholipase D/nuclease
Rpal_3459	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3461	SSF55326	PurM N-terminal domain-like
Rpal_3461	SSF56042	PurM C-terminal domain-like
Rpal_3462	SSF53328	Formyltransferase
Rpal_3463	SSF50249	Nucleic acid-binding proteins
Rpal_3464	SSF46785	"Winged helix" DNA-binding domain
Rpal_3464	SSF51206	cAMP-binding domain-like
Rpal_3466	SSF54919	Nucleoside diphosphate kinase, NDK
Rpal_3467	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3469	SSF102400	DNA polymerase III chi subunit
Rpal_3470	SSF52949	Macro domain-like
Rpal_3470	SSF53187	Zn-dependent exopeptidases
Rpal_3474	SSF109998	Triger factor/SurA peptide-binding domain-like
Rpal_3475	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_3476	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3477	SSF50129	GroES-like
Rpal_3477	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3479	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3482	SSF53901	Thiolase-like
Rpal_3483	SSF47336	ACP-like
Rpal_3484	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3485	SSF52151	FabD/lysophospholipase-like
Rpal_3485	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rpal_3486	SSF55073	Nucleotide cyclase
Rpal_3487	SSF54995	Ribosomal protein S6
Rpal_3488	SSF46911	Ribosomal protein S18
Rpal_3490	SSF55653	Ribosomal protein L9 C-domain
Rpal_3490	SSF55658	L9 N-domain-like
Rpal_3491	SSF46626	Cytochrome c
Rpal_3492	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3494	SSF48024	N-terminal domain of DnaB helicase
Rpal_3494	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3495	SSF50621	Alanine racemase C-terminal domain-like
Rpal_3495	SSF51419	PLP-binding barrel
Rpal_3498	SSF53146	Nitrogenase accessory factor-like
Rpal_3499	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3499	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_3501	SSF53271	PRTase-like
Rpal_3501	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_3502	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3503	SSF53822	Periplasmic binding protein-like I
Rpal_3504	SSF103473	MFS general substrate transporter
Rpal_3505	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3508	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_3510	SSF53850	Periplasmic binding protein-like II
Rpal_3512	SSF81901	HCP-like
Rpal_3514	SSF55931	Glutamine synthetase/guanido kinase
Rpal_3514	SSF89095	GatB/YqeY motif
Rpal_3515	SSF52151	FabD/lysophospholipase-like
Rpal_3516	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3516	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3517	SSF75304	Amidase signature (AS) enzymes
Rpal_3521	SSF141000	Glu-tRNAGln amidotransferase C subunit
Rpal_3522	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_3523	SSF53098	Ribonuclease H-like
Rpal_3524	SSF54427	NTF2-like
Rpal_3525	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_3525	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_3526	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_3526	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_3527	SSF53671	Aspartate/ornithine carbamoyltransferase
Rpal_3528	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_3528	SSF51556	Metallo-dependent hydrolases
Rpal_3531	SSF102405	MCP/YpsA-like
Rpal_3535	SSF56712	Prokaryotic type I DNA topoisomerase
Rpal_3535	SSF57783	Zinc beta-ribbon
Rpal_3536	SSF50249	Nucleic acid-binding proteins
Rpal_3538	SSF55811	Nudix
Rpal_3539	SSF103473	MFS general substrate transporter
Rpal_3540	SSF57829	Zn-binding ribosomal proteins
Rpal_3541	SSF52172	CheY-like
Rpal_3541	SSF55073	Nucleotide cyclase
Rpal_3542	SSF52172	CheY-like
Rpal_3544	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
Rpal_3544	SSF56672	DNA/RNA polymerases
Rpal_3546	SSF55298	YjgF-like
Rpal_3547	SSF51695	PLC-like phosphodiesterases
Rpal_3548	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_3549	SSF54197	HIT-like
Rpal_3550	SSF118196	YaeB-like
Rpal_3553	SSF49879	SMAD/FHA domain
Rpal_3554	SSF53955	Lysozyme-like
Rpal_3556	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3556	SSF81923	Double Clp-N motif
Rpal_3557	SSF54736	ClpS-like
Rpal_3558	SSF53300	vWA-like
Rpal_3559	SSF56601	beta-lactamase/transpeptidase-like
Rpal_3560	SSF46565	Chaperone J-domain
Rpal_3561	SSF53300	vWA-like
Rpal_3562	SSF53474	alpha/beta-Hydrolases
Rpal_3563	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3564	SSF52374	Nucleotidylyl transferase
Rpal_3568	SSF47616	GST C-terminal domain-like
Rpal_3568	SSF52833	Thioredoxin-like
Rpal_3569	SSF46785	"Winged helix" DNA-binding domain
Rpal_3571	SSF51430	NAD(P)-linked oxidoreductase
Rpal_3572	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3573	SSF158791	MgtE N-terminal domain-like
Rpal_3573	SSF161093	MgtE membrane domain-like
Rpal_3573	SSF54631	CBS-domain pair
Rpal_3574	SSF88713	Glycoside hydrolase/deacetylase
Rpal_3575	SSF88713	Glycoside hydrolase/deacetylase
Rpal_3578	SSF101801	Surface presentation of antigens (SPOA)
Rpal_3579	SSF55681	Class II aaRS and biotin synthetases
Rpal_3580	SSF141868	EAL domain-like
Rpal_3580	SSF55073	Nucleotide cyclase
Rpal_3580	SSF55781	GAF domain-like
Rpal_3580	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3581	SSF55331	Tautomerase/MIF
Rpal_3582	SSF46785	"Winged helix" DNA-binding domain
Rpal_3582	SSF53850	Periplasmic binding protein-like II
Rpal_3583	SSF54975	Acylphosphatase/BLUF domain-like
Rpal_3584	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_3585	SSF51230	Single hybrid motif
Rpal_3585	SSF51246	Rudiment single hybrid motif
Rpal_3585	SSF52440	PreATP-grasp domain
Rpal_3585	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_3586	SSF53649	Alkaline phosphatase-like
Rpal_3589	SSF48173	Cryptochrome/photolyase FAD-binding domain
Rpal_3589	SSF52425	Cryptochrome/photolyase, N-terminal domain
Rpal_3591	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_3592	SSF54506	Diaminopimelate epimerase-like
Rpal_3594	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3598	SSF158472	HAMP domain-like
Rpal_3598	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_3600	SSF158472	HAMP domain-like
Rpal_3600	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3600	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3601	SSF46626	Cytochrome c
Rpal_3601	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rpal_3602	SSF55811	Nudix
Rpal_3603	SSF51569	Aldolase
Rpal_3604	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3605	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3606	SSF50249	Nucleic acid-binding proteins
Rpal_3607	SSF53901	Thiolase-like
Rpal_3608	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_3608	SSF52922	TK C-terminal domain-like
Rpal_3608	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rpal_3613	SSF56112	Protein kinase-like (PK-like)
Rpal_3613	SSF81606	PP2C-like
Rpal_3615	SSF143011	RelE-like
Rpal_3616	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3617	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3618	SSF52096	ClpP/crotonase
Rpal_3620	SSF160544	EscU C-terminal domain-like
Rpal_3622	SSF160909	ATP12-like
Rpal_3624	SSF55120	Pseudouridine synthase
Rpal_3624	SSF55174	Alpha-L RNA-binding motif
Rpal_3626	SSF53474	alpha/beta-Hydrolases
Rpal_3627	SSF48452	TPR-like
Rpal_3631	SSF55469	FMN-dependent nitroreductase-like
Rpal_3632	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_3632	SSF52172	CheY-like
Rpal_3632	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3632	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3633	SSF53822	Periplasmic binding protein-like I
Rpal_3634	SSF111038	YjbQ-like
Rpal_3635	SSF141868	EAL domain-like
Rpal_3635	SSF55073	Nucleotide cyclase
Rpal_3636	SSF48019	post-AAA+ oligomerization domain-like
Rpal_3636	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3637	SSF50156	PDZ domain-like
Rpal_3637	SSF50494	Trypsin-like serine proteases
Rpal_3638	SSF46785	"Winged helix" DNA-binding domain
Rpal_3639	SSF50129	GroES-like
Rpal_3639	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3640	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3641	SSF64263	Prokaryotic ribosomal protein L17
Rpal_3642	SSF47789	C-terminal domain of RNA polymerase alpha subunit
Rpal_3642	SSF55257	RBP11-like subunits of RNA polymerase
Rpal_3642	SSF56553	Insert subdomain of RNA polymerase alpha subunit
Rpal_3643	SSF53137	Translational machinery components
Rpal_3644	SSF46946	S13-like H2TH domain
Rpal_3646	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3647	SSF103491	Preprotein translocase SecY subunit
Rpal_3648	SSF52080	Ribosomal proteins L15p and L18e
Rpal_3649	SSF55129	Ribosomal protein L30p/L7e
Rpal_3650	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_3650	SSF54768	dsRNA-binding domain-like
Rpal_3651	SSF53137	Translational machinery components
Rpal_3652	SSF56053	Ribosomal protein L6
Rpal_3653	SSF56047	Ribosomal protein S8
Rpal_3654	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_3655	SSF55282	RL5-like
Rpal_3656	SSF50104	Translation proteins SH3-like domain
Rpal_3657	SSF50193	Ribosomal protein L14
Rpal_3658	SSF50249	Nucleic acid-binding proteins
Rpal_3659	SSF46561	Ribosomal protein L29 (L29p)
Rpal_3660	SSF54686	Ribosomal protein L16p/L10e
Rpal_3661	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rpal_3661	SSF54821	Ribosomal protein S3 C-terminal domain
Rpal_3662	SSF54843	Ribosomal protein L22
Rpal_3663	SSF54570	Ribosomal protein S19
Rpal_3664	SSF50104	Translation proteins SH3-like domain
Rpal_3664	SSF50249	Nucleic acid-binding proteins
Rpal_3665	SSF54189	Ribosomal proteins S24e, L23 and L15e
Rpal_3666	SSF52166	Ribosomal protein L4
Rpal_3667	SSF50447	Translation proteins
Rpal_3668	SSF54999	Ribosomal protein S10
Rpal_3669	SSF50447	Translation proteins
Rpal_3669	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rpal_3669	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3670	SSF50447	Translation proteins
Rpal_3670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3670	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_3670	SSF54980	EF-G C-terminal domain-like
Rpal_3671	SSF47973	Ribosomal protein S7
Rpal_3672	SSF50249	Nucleic acid-binding proteins
Rpal_3674	SSF46689	Homeodomain-like
Rpal_3674	SSF51182	RmlC-like cupins
Rpal_3675	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3677	SSF46785	"Winged helix" DNA-binding domain
Rpal_3677	SSF53850	Periplasmic binding protein-like II
Rpal_3678	SSF103473	MFS general substrate transporter
Rpal_3679	SSF55008	HMA, heavy metal-associated domain
Rpal_3679	SSF56784	HAD-like
Rpal_3679	SSF81653	Calcium ATPase, transduction domain A
Rpal_3679	SSF81665	Calcium ATPase, transmembrane domain M
Rpal_3680	SSF46955	Putative DNA-binding domain
Rpal_3681	SSF103473	MFS general substrate transporter
Rpal_3682	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_3683	SSF46785	"Winged helix" DNA-binding domain
Rpal_3684	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3684	SSF90123	ABC transporter transmembrane region
Rpal_3685	SSF51905	FAD/NAD(P)-binding domain
Rpal_3685	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3685	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_3686	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rpal_3687	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rpal_3688	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Rpal_3688	SSF54736	ClpS-like
Rpal_3689	SSF160369	Ribosomal protein L10-like
Rpal_3690	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3690	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_3691	SSF56808	Ribosomal protein L1
Rpal_3692	SSF46906	Ribosomal protein L11, C-terminal domain
Rpal_3692	SSF54747	Ribosomal L11/L12e N-terminal domain
Rpal_3693	SSF50104	Translation proteins SH3-like domain
Rpal_3693	SSF82679	N-utilization substance G protein NusG, N-terminal domain
Rpal_3695	SSF74653	TolA/TonB C-terminal domain
Rpal_3698	SSF48613	Heme oxygenase-like
Rpal_3699	SSF56925	OMPA-like
Rpal_3699	SSF56935	Porins
Rpal_3701	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_3701	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_3703	SSF50447	Translation proteins
Rpal_3703	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rpal_3703	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3704	SSF56601	beta-lactamase/transpeptidase-like
Rpal_3705	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3706	SSF53254	Phosphoglycerate mutase-like
Rpal_3707	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3709	SSF56112	Protein kinase-like (PK-like)
Rpal_3710	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_3710	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_3711	SSF46689	Homeodomain-like
Rpal_3711	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3714	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3718	SSF53822	Periplasmic binding protein-like I
Rpal_3719	SSF53474	alpha/beta-Hydrolases
Rpal_3720	SSF56801	Acetyl-CoA synthetase-like
Rpal_3721	SSF46689	Homeodomain-like
Rpal_3721	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3722	SSF53901	Thiolase-like
Rpal_3723	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3724	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3725	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3726	SSF52096	ClpP/crotonase
Rpal_3727	SSF49503	Cupredoxins
Rpal_3728	SSF56219	DNase I-like
Rpal_3730	SSF47240	Ferritin-like
Rpal_3732	SSF52317	Class I glutamine amidotransferase-like
Rpal_3732	SSF56634	Heme-dependent catalase-like
Rpal_3733	SSF51011	Glycosyl hydrolase domain
Rpal_3733	SSF51445	(Trans)glycosidases
Rpal_3733	SSF81296	E set domains
Rpal_3734	SSF54001	Cysteine proteinases
Rpal_3736	SSF50156	PDZ domain-like
Rpal_3736	SSF50494	Trypsin-like serine proteases
Rpal_3739	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rpal_3739	SSF52738	Methylesterase CheB, C-terminal domain
Rpal_3739	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3739	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3741	SSF46785	"Winged helix" DNA-binding domain
Rpal_3741	SSF51206	cAMP-binding domain-like
Rpal_3744	SSF53738	Phosphoglucomutase, first 3 domains
Rpal_3744	SSF55957	Phosphoglucomutase, C-terminal domain
Rpal_3745	SSF51182	RmlC-like cupins
Rpal_3745	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_3749	SSF47413	lambda repressor-like DNA-binding domains
Rpal_3758	SSF56214	4'-phosphopantetheinyl transferase
Rpal_3759	SSF53474	alpha/beta-Hydrolases
Rpal_3760	SSF52777	CoA-dependent acyltransferases
Rpal_3760	SSF53474	alpha/beta-Hydrolases
Rpal_3761	SSF47336	ACP-like
Rpal_3761	SSF52151	FabD/lysophospholipase-like
Rpal_3761	SSF52777	CoA-dependent acyltransferases
Rpal_3761	SSF53383	PLP-dependent transferases
Rpal_3761	SSF53901	Thiolase-like
Rpal_3761	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rpal_3761	SSF56801	Acetyl-CoA synthetase-like
Rpal_3762	SSF47336	ACP-like
Rpal_3762	SSF56801	Acetyl-CoA synthetase-like
Rpal_3764	SSF51445	(Trans)glycosidases
Rpal_3765	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3766	SSF51905	FAD/NAD(P)-binding domain
Rpal_3768	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3769	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_3772	SSF53383	PLP-dependent transferases
Rpal_3774	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3775	SSF56300	Metallo-dependent phosphatases
Rpal_3777	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3786	SSF56349	DNA breaking-rejoining enzymes
Rpal_3794	SSF56300	Metallo-dependent phosphatases
Rpal_3802	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3803	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3804	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3805	SSF46785	"Winged helix" DNA-binding domain
Rpal_3808	SSF143081	BB1717-like
Rpal_3809	SSF56672	DNA/RNA polymerases
Rpal_3813	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3816	SSF53474	alpha/beta-Hydrolases
Rpal_3817	SSF56349	DNA breaking-rejoining enzymes
Rpal_3818	SSF46785	"Winged helix" DNA-binding domain
Rpal_3818	SSF51206	cAMP-binding domain-like
Rpal_3824	SSF161111	Cation efflux protein transmembrane domain-like
Rpal_3825	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rpal_3826	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3827	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3830	SSF53822	Periplasmic binding protein-like I
Rpal_3831	SSF50346	PRC-barrel domain
Rpal_3836	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_3837	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3838	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3839	SSF52172	CheY-like
Rpal_3840	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_3840	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3840	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_3842	SSF53474	alpha/beta-Hydrolases
Rpal_3844	SSF55315	L30e-like
Rpal_3844	SSF75217	alpha/beta knot
Rpal_3848	SSF54975	Acylphosphatase/BLUF domain-like
Rpal_3853	SSF56925	OMPA-like
Rpal_3856	SSF111331	NAD kinase/diacylglycerol kinase-like
Rpal_3857	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3858	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3861	SSF52172	CheY-like
Rpal_3862	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_3864	SSF161098	MetI-like
Rpal_3865	SSF53850	Periplasmic binding protein-like II
Rpal_3866	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3867	SSF56317	Carbon-nitrogen hydrolase
Rpal_3868	SSF46785	"Winged helix" DNA-binding domain
Rpal_3868	SSF53850	Periplasmic binding protein-like II
Rpal_3869	SSF53955	Lysozyme-like
Rpal_3871	SSF141734	HisI-like
Rpal_3872	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rpal_3873	SSF82649	SufE/NifU
Rpal_3874	SSF52096	ClpP/crotonase
Rpal_3878	SSF50249	Nucleic acid-binding proteins
Rpal_3882	SSF46689	Homeodomain-like
Rpal_3883	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3885	SSF103473	MFS general substrate transporter
Rpal_3886	SSF52954	Class II aaRS ABD-related
Rpal_3886	SSF55186	ThrRS/AlaRS common domain
Rpal_3886	SSF55681	Class II aaRS and biotin synthetases
Rpal_3886	SSF81271	TGS-like
Rpal_3888	SSF55469	FMN-dependent nitroreductase-like
Rpal_3889	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_3889	SSF51556	Metallo-dependent hydrolases
Rpal_3890	SSF141868	EAL domain-like
Rpal_3890	SSF55073	Nucleotide cyclase
Rpal_3890	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_3892	SSF52151	FabD/lysophospholipase-like
Rpal_3895	SSF56935	Porins
Rpal_3896	SSF46689	Homeodomain-like
Rpal_3896	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3897	SSF54631	CBS-domain pair
Rpal_3898	SSF144091	Rhomboid-like
Rpal_3900	SSF46785	"Winged helix" DNA-binding domain
Rpal_3900	SSF51206	cAMP-binding domain-like
Rpal_3901	SSF141371	PilZ domain-like
Rpal_3906	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3908	SSF46785	"Winged helix" DNA-binding domain
Rpal_3912	SSF51161	Trimeric LpxA-like enzymes
Rpal_3916	SSF51161	Trimeric LpxA-like enzymes
Rpal_3917	SSF53474	alpha/beta-Hydrolases
Rpal_3920	SSF51905	FAD/NAD(P)-binding domain
Rpal_3920	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_3922	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_3924	SSF52980	Restriction endonuclease-like
Rpal_3925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3927	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_3928	SSF53187	Zn-dependent exopeptidases
Rpal_3928	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_3929	SSF75304	Amidase signature (AS) enzymes
Rpal_3930	SSF52096	ClpP/crotonase
Rpal_3932	SSF56529	FAH
Rpal_3933	SSF46785	"Winged helix" DNA-binding domain
Rpal_3933	SSF48008	GntR ligand-binding domain-like
Rpal_3934	SSF56801	Acetyl-CoA synthetase-like
Rpal_3935	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_3935	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3936	SSF52096	ClpP/crotonase
Rpal_3937	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_3937	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_3938	SSF88723	PIN domain-like
Rpal_3939	SSF47598	Ribbon-helix-helix
Rpal_3940	SSF53720	ALDH-like
Rpal_3941	SSF46689	Homeodomain-like
Rpal_3941	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_3942	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3943	SSF52096	ClpP/crotonase
Rpal_3944	SSF103473	MFS general substrate transporter
Rpal_3945	SSF52096	ClpP/crotonase
Rpal_3946	SSF46785	"Winged helix" DNA-binding domain
Rpal_3946	SSF55781	GAF domain-like
Rpal_3947	SSF51230	Single hybrid motif
Rpal_3948	SSF53850	Periplasmic binding protein-like II
Rpal_3951	SSF50249	Nucleic acid-binding proteins
Rpal_3952	SSF53901	Thiolase-like
Rpal_3953	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_3954	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_3955	SSF56801	Acetyl-CoA synthetase-like
Rpal_3956	SSF53901	Thiolase-like
Rpal_3957	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3958	SSF161098	MetI-like
Rpal_3959	SSF160964	MalF N-terminal region-like
Rpal_3959	SSF161098	MetI-like
Rpal_3960	SSF53850	Periplasmic binding protein-like II
Rpal_3961	SSF50331	MOP-like
Rpal_3961	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_3962	SSF143975	IlvD/EDD N-terminal domain-like
Rpal_3962	SSF52016	LeuD/IlvD-like
Rpal_3963	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3964	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_3965	SSF74653	TolA/TonB C-terminal domain
Rpal_3968	SSF51197	Clavaminate synthase-like
Rpal_3969	SSF56935	Porins
Rpal_3971	SSF111369	HlyD-like secretion proteins
Rpal_3972	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_3972	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_3972	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_3973	SSF88723	PIN domain-like
Rpal_3974	SSF89447	AbrB/MazE/MraZ-like
Rpal_3980	SSF56563	Major capsid protein gp5
Rpal_3996	SSF50494	Trypsin-like serine proteases
Rpal_3997	SSF56349	DNA breaking-rejoining enzymes
Rpal_3999	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_4000	SSF53822	Periplasmic binding protein-like I
Rpal_4001	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4002	SSF50156	PDZ domain-like
Rpal_4002	SSF50494	Trypsin-like serine proteases
Rpal_4004	SSF117892	Band 7/SPFH domain
Rpal_4005	SSF117892	Band 7/SPFH domain
Rpal_4006	SSF53597	Dihydrofolate reductase-like
Rpal_4007	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
Rpal_4008	SSF53850	Periplasmic binding protein-like II
Rpal_4013	SSF101738	SspB-like
Rpal_4014	SSF48557	L-aspartase-like
Rpal_4018	SSF55103	FAD-linked oxidases, C-terminal domain
Rpal_4018	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_4019	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4021	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4022	SSF143100	TTHA1013/TTHA0281-like
Rpal_4023	SSF143100	TTHA1013/TTHA0281-like
Rpal_4024	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4027	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4028	SSF103473	MFS general substrate transporter
Rpal_4028	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4029	SSF51905	FAD/NAD(P)-binding domain
Rpal_4031	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4033	SSF53092	Creatinase/prolidase N-terminal domain
Rpal_4033	SSF55920	Creatinase/aminopeptidase
Rpal_4034	SSF103473	MFS general substrate transporter
Rpal_4035	SSF47781	RuvA domain 2-like
Rpal_4035	SSF50249	Nucleic acid-binding proteins
Rpal_4035	SSF52113	BRCT domain
Rpal_4035	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rpal_4036	SSF82771	GIY-YIG endonuclease
Rpal_4037	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4038	SSF48452	TPR-like
Rpal_4039	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_4040	SSF52490	Tubulin nucleotide-binding domain-like
Rpal_4040	SSF55307	Tubulin C-terminal domain-like
Rpal_4041	SSF53067	Actin-like ATPase domain
Rpal_4043	SSF52440	PreATP-grasp domain
Rpal_4043	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4046	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_4046	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Rpal_4047	SSF51984	MurCD N-terminal domain
Rpal_4047	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rpal_4047	SSF53623	MurD-like peptide ligases, catalytic domain
Rpal_4048	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4050	SSF51984	MurCD N-terminal domain
Rpal_4050	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rpal_4050	SSF53623	MurD-like peptide ligases, catalytic domain
Rpal_4052	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rpal_4052	SSF53623	MurD-like peptide ligases, catalytic domain
Rpal_4052	SSF63418	MurE/MurF N-terminal domain
Rpal_4053	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rpal_4053	SSF53623	MurD-like peptide ligases, catalytic domain
Rpal_4053	SSF63418	MurE/MurF N-terminal domain
Rpal_4054	SSF56519	Penicillin binding protein dimerisation domain
Rpal_4054	SSF56601	beta-lactamase/transpeptidase-like
Rpal_4056	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4056	SSF81799	Putative methyltransferase TM0872, insert domain
Rpal_4057	SSF47090	PGBD-like
Rpal_4057	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
Rpal_4058	SSF140931	Fic-like
Rpal_4060	SSF103473	MFS general substrate transporter
Rpal_4061	SSF111369	HlyD-like secretion proteins
Rpal_4062	SSF46689	Homeodomain-like
Rpal_4062	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4064	SSF103190	Sensory domain-like
Rpal_4064	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4066	SSF103515	Autotransporter
Rpal_4066	SSF51126	Pectin lyase-like
Rpal_4067	SSF56784	HAD-like
Rpal_4068	SSF102114	Radical SAM enzymes
Rpal_4068	SSF52242	Cobalamin (vitamin B12)-binding domain
Rpal_4069	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4070	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4072	SSF52833	Thioredoxin-like
Rpal_4073	SSF52788	Phosphotyrosine protein phosphatases I
Rpal_4074	SSF46785	"Winged helix" DNA-binding domain
Rpal_4075	SSF52833	Thioredoxin-like
Rpal_4077	SSF46785	"Winged helix" DNA-binding domain
Rpal_4079	SSF46785	"Winged helix" DNA-binding domain
Rpal_4080	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4083	SSF53383	PLP-dependent transferases
Rpal_4084	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4085	SSF57652	HIPIP (high potential iron protein)
Rpal_4087	SSF50346	PRC-barrel domain
Rpal_4089	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_4089	SSF52172	CheY-like
Rpal_4090	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4090	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4092	SSF51905	FAD/NAD(P)-binding domain
Rpal_4092	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_4093	SSF54285	MoaD/ThiS
Rpal_4094	SSF110399	ThiG-like
Rpal_4095	SSF51391	Thiamin phosphate synthase
Rpal_4099	SSF54427	NTF2-like
Rpal_4101	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4102	SSF47598	Ribbon-helix-helix
Rpal_4108	SSF51905	FAD/NAD(P)-binding domain
Rpal_4108	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_4111	SSF55298	YjgF-like
Rpal_4115	SSF55136	Probable bacterial effector-binding domain
Rpal_4118	SSF158472	HAMP domain-like
Rpal_4118	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4120	SSF47240	Ferritin-like
Rpal_4124	SSF47090	PGBD-like
Rpal_4124	SSF53955	Lysozyme-like
Rpal_4126	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4131	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4133	SSF52821	Rhodanese/Cell cycle control phosphatase
Rpal_4134	SSF52821	Rhodanese/Cell cycle control phosphatase
Rpal_4136	SSF55073	Nucleotide cyclase
Rpal_4136	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4138	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4139	SSF50022	ISP domain
Rpal_4139	SSF55961	Bet v1-like
Rpal_4140	SSF46785	"Winged helix" DNA-binding domain
Rpal_4140	SSF48008	GntR ligand-binding domain-like
Rpal_4141	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_4141	SSF54292	2Fe-2S ferredoxin-like
Rpal_4141	SSF63380	Riboflavin synthase domain-like
Rpal_4143	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4144	SSF63829	Calcium-dependent phosphotriesterase
Rpal_4146	SSF82771	GIY-YIG endonuclease
Rpal_4148	SSF52833	Thioredoxin-like
Rpal_4149	SSF75304	Amidase signature (AS) enzymes
Rpal_4151	SSF53474	alpha/beta-Hydrolases
Rpal_4152	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4153	SSF46785	"Winged helix" DNA-binding domain
Rpal_4155	SSF51569	Aldolase
Rpal_4155	SSF53697	SIS domain
Rpal_4156	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_4156	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4157	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4157	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_4158	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_4159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4160	SSF56784	HAD-like
Rpal_4161	SSF48208	Six-hairpin glycosidases
Rpal_4162	SSF51445	(Trans)glycosidases
Rpal_4163	SSF51445	(Trans)glycosidases
Rpal_4164	SSF51011	Glycosyl hydrolase domain
Rpal_4164	SSF51445	(Trans)glycosidases
Rpal_4164	SSF56112	Protein kinase-like (PK-like)
Rpal_4165	SSF51011	Glycosyl hydrolase domain
Rpal_4165	SSF51445	(Trans)glycosidases
Rpal_4165	SSF81296	E set domains
Rpal_4166	SSF51011	Glycosyl hydrolase domain
Rpal_4166	SSF51445	(Trans)glycosidases
Rpal_4166	SSF81296	E set domains
Rpal_4167	SSF51445	(Trans)glycosidases
Rpal_4167	SSF81296	E set domains
Rpal_4168	SSF51445	(Trans)glycosidases
Rpal_4171	SSF50249	Nucleic acid-binding proteins
Rpal_4171	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rpal_4172	SSF100939	SPOC domain-like
Rpal_4174	SSF64307	SirA-like
Rpal_4175	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4176	SSF50129	GroES-like
Rpal_4176	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4177	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_4178	SSF56801	Acetyl-CoA synthetase-like
Rpal_4180	SSF69287	Urease metallochaperone UreE, N-terminal domain
Rpal_4180	SSF69737	Urease metallochaperone UreE, C-terminal domain
Rpal_4181	SSF54909	Dimeric alpha+beta barrel
Rpal_4182	SSF51338	Composite domain of metallo-dependent hydrolases
Rpal_4182	SSF51556	Metallo-dependent hydrolases
Rpal_4183	SSF109604	HD-domain/PDEase-like
Rpal_4184	SSF51278	Urease, beta-subunit
Rpal_4185	SSF54111	Urease, gamma-subunit
Rpal_4187	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4188	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4191	SSF53822	Periplasmic binding protein-like I
Rpal_4192	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4193	SSF50249	Nucleic acid-binding proteins
Rpal_4194	SSF50249	Nucleic acid-binding proteins
Rpal_4202	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4203	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4206	SSF48452	TPR-like
Rpal_4207	SSF53187	Zn-dependent exopeptidases
Rpal_4208	SSF50044	SH3-domain
Rpal_4208	SSF54001	Cysteine proteinases
Rpal_4209	SSF55811	Nudix
Rpal_4210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4211	SSF161098	MetI-like
Rpal_4212	SSF161098	MetI-like
Rpal_4213	SSF53850	Periplasmic binding protein-like II
Rpal_4214	SSF53850	Periplasmic binding protein-like II
Rpal_4215	SSF46626	Cytochrome c
Rpal_4216	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4217	SSF53850	Periplasmic binding protein-like II
Rpal_4217	SSF55021	ACT-like
Rpal_4218	SSF46689	Homeodomain-like
Rpal_4219	SSF111369	HlyD-like secretion proteins
Rpal_4220	SSF103473	MFS general substrate transporter
Rpal_4221	SSF63380	Riboflavin synthase domain-like
Rpal_4222	SSF51679	Bacterial luciferase-like
Rpal_4223	SSF51730	FAD-linked oxidoreductase
Rpal_4224	SSF47644	Methionine synthase domain
Rpal_4224	SSF51717	Dihydropteroate synthetase-like
Rpal_4224	SSF52242	Cobalamin (vitamin B12)-binding domain
Rpal_4224	SSF56507	Methionine synthase activation domain-like
Rpal_4224	SSF82282	Homocysteine S-methyltransferase
Rpal_4225	SSF82771	GIY-YIG endonuclease
Rpal_4226	SSF53067	Actin-like ATPase domain
Rpal_4227	SSF52172	CheY-like
Rpal_4228	SSF53850	Periplasmic binding protein-like II
Rpal_4229	SSF46458	Globin-like
Rpal_4230	SSF46458	Globin-like
Rpal_4231	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Rpal_4231	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rpal_4232	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_4232	SSF63380	Riboflavin synthase domain-like
Rpal_4233	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4234	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_4234	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_4235	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_4235	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_4236	SSF53901	Thiolase-like
Rpal_4237	SSF56801	Acetyl-CoA synthetase-like
Rpal_4238	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_4238	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4238	SSF52096	ClpP/crotonase
Rpal_4239	SSF46785	"Winged helix" DNA-binding domain
Rpal_4239	SSF55781	GAF domain-like
Rpal_4240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4241	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4244	SSF53822	Periplasmic binding protein-like I
Rpal_4245	SSF53822	Periplasmic binding protein-like I
Rpal_4246	SSF53822	Periplasmic binding protein-like I
Rpal_4247	SSF47240	Ferritin-like
Rpal_4248	SSF143865	CorA soluble domain-like
Rpal_4248	SSF144083	Magnesium transport protein CorA, transmembrane region
Rpal_4249	SSF56925	OMPA-like
Rpal_4250	SSF53187	Zn-dependent exopeptidases
Rpal_4250	SSF55031	Bacterial exopeptidase dimerisation domain
Rpal_4251	SSF51905	FAD/NAD(P)-binding domain
Rpal_4251	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_4252	SSF53474	alpha/beta-Hydrolases
Rpal_4253	SSF53383	PLP-dependent transferases
Rpal_4254	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4256	SSF102114	Radical SAM enzymes
Rpal_4257	SSF53850	Periplasmic binding protein-like II
Rpal_4258	SSF53649	Alkaline phosphatase-like
Rpal_4259	SSF46785	"Winged helix" DNA-binding domain
Rpal_4259	SSF53850	Periplasmic binding protein-like II
Rpal_4260	SSF53167	Purine and uridine phosphorylases
Rpal_4261	SSF48239	Terpenoid cyclases/Protein prenyltransferases
Rpal_4262	SSF51905	FAD/NAD(P)-binding domain
Rpal_4263	SSF48576	Terpenoid synthases
Rpal_4264	SSF48576	Terpenoid synthases
Rpal_4267	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4269	SSF102114	Radical SAM enzymes
Rpal_4271	SSF158472	HAMP domain-like
Rpal_4271	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4273	SSF54001	Cysteine proteinases
Rpal_4274	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4275	SSF54001	Cysteine proteinases
Rpal_4276	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_4277	SSF89733	L-sulfolactate dehydrogenase-like
Rpal_4278	SSF46785	"Winged helix" DNA-binding domain
Rpal_4279	SSF56529	FAH
Rpal_4280	SSF55331	Tautomerase/MIF
Rpal_4281	SSF53720	ALDH-like
Rpal_4282	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_4283	SSF56529	FAH
Rpal_4284	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_4284	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_4285	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_4285	SSF54292	2Fe-2S ferredoxin-like
Rpal_4285	SSF63380	Riboflavin synthase domain-like
Rpal_4286	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rpal_4287	SSF47240	Ferritin-like
Rpal_4289	SSF47240	Ferritin-like
Rpal_4290	SSF46689	Homeodomain-like
Rpal_4290	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4293	SSF53474	alpha/beta-Hydrolases
Rpal_4295	SSF51905	FAD/NAD(P)-binding domain
Rpal_4295	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_4296	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_4296	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_4296	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4297	SSF111369	HlyD-like secretion proteins
Rpal_4298	SSF46689	Homeodomain-like
Rpal_4299	SSF48264	Cytochrome P450
Rpal_4300	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4301	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_4302	SSF53613	Ribokinase-like
Rpal_4303	SSF51905	FAD/NAD(P)-binding domain
Rpal_4303	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_4305	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4306	SSF117396	TM1631-like
Rpal_4311	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4312	SSF111369	HlyD-like secretion proteins
Rpal_4313	SSF46689	Homeodomain-like
Rpal_4313	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4314	SSF103473	MFS general substrate transporter
Rpal_4314	SSF55073	Nucleotide cyclase
Rpal_4316	SSF102462	Peptidyl-tRNA hydrolase II
Rpal_4318	SSF52096	ClpP/crotonase
Rpal_4319	SSF46785	"Winged helix" DNA-binding domain
Rpal_4319	SSF53850	Periplasmic binding protein-like II
Rpal_4320	SSF53218	Molybdenum cofactor biosynthesis proteins
Rpal_4320	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4323	SSF53300	vWA-like
Rpal_4324	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4325	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
Rpal_4325	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_4326	SSF47741	CO dehydrogenase ISP C-domain like
Rpal_4326	SSF54292	2Fe-2S ferredoxin-like
Rpal_4327	SSF55961	Bet v1-like
Rpal_4332	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4333	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4334	SSF53822	Periplasmic binding protein-like I
Rpal_4335	SSF82771	GIY-YIG endonuclease
Rpal_4336	SSF46689	Homeodomain-like
Rpal_4336	SSF53098	Ribonuclease H-like
Rpal_4338	SSF56266	DmpA/ArgJ-like
Rpal_4339	SSF47473	EF-hand
Rpal_4340	SSF51366	Ribulose-phoshate binding barrel
Rpal_4342	SSF46689	Homeodomain-like
Rpal_4342	SSF53098	Ribonuclease H-like
Rpal_4343	SSF48557	L-aspartase-like
Rpal_4344	SSF52317	Class I glutamine amidotransferase-like
Rpal_4346	SSF82697	PurS-like
Rpal_4347	SSF56104	SAICAR synthase-like
Rpal_4349	SSF46689	Homeodomain-like
Rpal_4350	SSF47413	lambda repressor-like DNA-binding domains
Rpal_4352	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_4357	SSF54534	FKBP-like
Rpal_4358	SSF52141	Uracil-DNA glycosylase-like
Rpal_4360	SSF55073	Nucleotide cyclase
Rpal_4360	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4361	SSF75217	alpha/beta knot
Rpal_4362	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_4363	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_4364	SSF46689	Homeodomain-like
Rpal_4365	SSF56935	Porins
Rpal_4368	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4369	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4371	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4372	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Rpal_4372	SSF50447	Translation proteins
Rpal_4372	SSF55186	ThrRS/AlaRS common domain
Rpal_4372	SSF55681	Class II aaRS and biotin synthetases
Rpal_4373	SSF101790	Aminomethyltransferase beta-barrel domain
Rpal_4373	SSF103025	Folate-binding domain
Rpal_4374	SSF51230	Single hybrid motif
Rpal_4375	SSF53383	PLP-dependent transferases
Rpal_4376	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4376	SSF54752	RecA protein, C-terminal domain
Rpal_4377	SSF103515	Autotransporter
Rpal_4377	SSF52266	SGNH hydrolase
Rpal_4383	SSF46785	"Winged helix" DNA-binding domain
Rpal_4383	SSF51206	cAMP-binding domain-like
Rpal_4386	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4387	SSF52129	Caspase-like
Rpal_4388	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4389	SSF52833	Thioredoxin-like
Rpal_4390	SSF47413	lambda repressor-like DNA-binding domains
Rpal_4392	SSF82199	SET domain
Rpal_4397	SSF117457	FumA C-terminal domain-like
Rpal_4402	SSF51316	Mss4-like
Rpal_4403	SSF47616	GST C-terminal domain-like
Rpal_4403	SSF52833	Thioredoxin-like
Rpal_4404	SSF54427	NTF2-like
Rpal_4405	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4405	SSF52172	CheY-like
Rpal_4405	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4405	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4406	SSF160544	EscU C-terminal domain-like
Rpal_4414	SSF48452	TPR-like
Rpal_4416	SSF53474	alpha/beta-Hydrolases
Rpal_4417	SSF46689	Homeodomain-like
Rpal_4417	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4420	SSF101801	Surface presentation of antigens (SPOA)
Rpal_4420	SSF103039	CheC-like
Rpal_4422	SSF117143	Flagellar hook protein flgE
Rpal_4423	SSF117143	Flagellar hook protein flgE
Rpal_4426	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_4426	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_4426	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4427	SSF111369	HlyD-like secretion proteins
Rpal_4428	SSF46689	Homeodomain-like
Rpal_4428	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4430	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
Rpal_4430	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_4438	SSF64518	Phase 1 flagellin
Rpal_4439	SSF48452	TPR-like
Rpal_4439	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4440	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_4440	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_4441	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4442	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4443	SSF52374	Nucleotidylyl transferase
Rpal_4443	SSF53613	Ribokinase-like
Rpal_4444	SSF50129	GroES-like
Rpal_4444	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4445	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_4445	SSF52922	TK C-terminal domain-like
Rpal_4446	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_4447	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4448	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4449	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4450	SSF53697	SIS domain
Rpal_4451	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4452	SSF64518	Phase 1 flagellin
Rpal_4453	SSF64518	Phase 1 flagellin
Rpal_4454	SSF64518	Phase 1 flagellin
Rpal_4455	SSF117143	Flagellar hook protein flgE
Rpal_4456	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4456	SSF52172	CheY-like
Rpal_4456	SSF55781	GAF domain-like
Rpal_4456	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4456	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4459	SSF51316	Mss4-like
Rpal_4460	SSF51905	FAD/NAD(P)-binding domain
Rpal_4461	SSF53254	Phosphoglycerate mutase-like
Rpal_4462	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_4465	SSF47240	Ferritin-like
Rpal_4467	SSF52266	SGNH hydrolase
Rpal_4470	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4471	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4472	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4473	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4474	SSF81340	Clc chloride channel
Rpal_4475	SSF51905	FAD/NAD(P)-binding domain
Rpal_4476	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4477	SSF54292	2Fe-2S ferredoxin-like
Rpal_4478	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_4480	SSF58113	Apolipoprotein A-I
Rpal_4481	SSF75304	Amidase signature (AS) enzymes
Rpal_4484	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4485	SSF52091	SpoIIaa-like
Rpal_4486	SSF51604	Enolase C-terminal domain-like
Rpal_4486	SSF54826	Enolase N-terminal domain-like
Rpal_4487	SSF103473	MFS general substrate transporter
Rpal_4489	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rpal_4490	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4491	SSF56300	Metallo-dependent phosphatases
Rpal_4492	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4493	SSF53613	Ribokinase-like
Rpal_4494	SSF54909	Dimeric alpha+beta barrel
Rpal_4495	SSF46626	Cytochrome c
Rpal_4496	SSF47175	Cytochromes
Rpal_4497	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rpal_4497	SSF56003	Molybdenum cofactor-binding domain
Rpal_4499	SSF53067	Actin-like ATPase domain
Rpal_4501	SSF53383	PLP-dependent transferases
Rpal_4502	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4502	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_4503	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4506	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4507	SSF52374	Nucleotidylyl transferase
Rpal_4507	SSF53613	Ribokinase-like
Rpal_4508	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4509	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4510	SSF53697	SIS domain
Rpal_4511	SSF56784	HAD-like
Rpal_4512	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4513	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4514	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4514	SSF90123	ABC transporter transmembrane region
Rpal_4515	SSF56529	FAH
Rpal_4517	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4517	SSF52980	Restriction endonuclease-like
Rpal_4518	SSF55073	Nucleotide cyclase
Rpal_4520	SSF46785	"Winged helix" DNA-binding domain
Rpal_4520	SSF51206	cAMP-binding domain-like
Rpal_4523	SSF102114	Radical SAM enzymes
Rpal_4524	SSF48452	TPR-like
Rpal_4524	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4524	SSF55073	Nucleotide cyclase
Rpal_4525	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4526	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_4526	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_4535	SSF55781	GAF domain-like
Rpal_4536	SSF55781	GAF domain-like
Rpal_4537	SSF52172	CheY-like
Rpal_4538	SSF103515	Autotransporter
Rpal_4538	SSF52743	Subtilisin-like
Rpal_4539	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4540	SSF46785	"Winged helix" DNA-binding domain
Rpal_4542	SSF143120	YefM-like
Rpal_4543	SSF88723	PIN domain-like
Rpal_4545	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4545	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_4546	SSF55973	S-adenosylmethionine synthetase
Rpal_4547	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4548	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_4548	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4548	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Rpal_4549	SSF53822	Periplasmic binding protein-like I
Rpal_4552	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4553	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4554	SSF51726	UROD/MetE-like
Rpal_4555	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4556	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4559	SSF53822	Periplasmic binding protein-like I
Rpal_4562	SSF53328	Formyltransferase
Rpal_4562	SSF55021	ACT-like
Rpal_4563	SSF69618	HemD-like
Rpal_4564	SSF53822	Periplasmic binding protein-like I
Rpal_4567	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4568	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4571	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4572	SSF56801	Acetyl-CoA synthetase-like
Rpal_4575	SSF53822	Periplasmic binding protein-like I
Rpal_4576	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4577	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4578	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4579	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4581	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4582	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4583	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4584	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4585	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4586	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4587	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4588	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4592	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_4592	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_4593	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_4593	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4594	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4596	SSF46689	Homeodomain-like
Rpal_4597	SSF53098	Ribonuclease H-like
Rpal_4603	SSF51316	Mss4-like
Rpal_4604	SSF55068	Peptide methionine sulfoxide reductase
Rpal_4605	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
Rpal_4605	SSF52335	Methylglyoxal synthase-like
Rpal_4605	SSF52440	PreATP-grasp domain
Rpal_4605	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4606	SSF46557	GreA transcript cleavage protein, N-terminal domain
Rpal_4606	SSF54534	FKBP-like
Rpal_4608	SSF46785	"Winged helix" DNA-binding domain
Rpal_4608	SSF54909	Dimeric alpha+beta barrel
Rpal_4609	SSF51905	FAD/NAD(P)-binding domain
Rpal_4610	SSF46785	"Winged helix" DNA-binding domain
Rpal_4610	SSF53850	Periplasmic binding protein-like II
Rpal_4611	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4618	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4618	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4618	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4620	SSF88723	PIN domain-like
Rpal_4621	SSF46785	"Winged helix" DNA-binding domain
Rpal_4621	SSF51206	cAMP-binding domain-like
Rpal_4622	SSF140683	SP0561-like
Rpal_4623	SSF49503	Cupredoxins
Rpal_4624	SSF56436	C-type lectin-like
Rpal_4625	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rpal_4625	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rpal_4625	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
Rpal_4626	SSF53271	PRTase-like
Rpal_4627	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_4629	SSF55331	Tautomerase/MIF
Rpal_4630	SSF46785	"Winged helix" DNA-binding domain
Rpal_4630	SSF53850	Periplasmic binding protein-like II
Rpal_4631	SSF53850	Periplasmic binding protein-like II
Rpal_4632	SSF161098	MetI-like
Rpal_4634	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_4635	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_4637	SSF161098	MetI-like
Rpal_4638	SSF161098	MetI-like
Rpal_4639	SSF50331	MOP-like
Rpal_4639	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4640	SSF46785	"Winged helix" DNA-binding domain
Rpal_4641	SSF161098	MetI-like
Rpal_4642	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4643	SSF53850	Periplasmic binding protein-like II
Rpal_4644	SSF50475	FMN-binding split barrel
Rpal_4645	SSF56317	Carbon-nitrogen hydrolase
Rpal_4646	SSF141868	EAL domain-like
Rpal_4646	SSF55073	Nucleotide cyclase
Rpal_4646	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4647	SSF51905	FAD/NAD(P)-binding domain
Rpal_4648	SSF46785	"Winged helix" DNA-binding domain
Rpal_4649	SSF48008	GntR ligand-binding domain-like
Rpal_4650	SSF53822	Periplasmic binding protein-like I
Rpal_4653	SSF55073	Nucleotide cyclase
Rpal_4654	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Rpal_4655	SSF51246	Rudiment single hybrid motif
Rpal_4655	SSF52440	PreATP-grasp domain
Rpal_4655	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4658	SSF51182	RmlC-like cupins
Rpal_4659	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_4660	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_4662	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4662	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_4663	SSF81469	Bacterial aa3 type cytochrome c oxidase subunit IV
Rpal_4665	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rpal_4667	SSF46689	Homeodomain-like
Rpal_4667	SSF52172	CheY-like
Rpal_4667	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4668	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4668	SSF47090	PGBD-like
Rpal_4669	SSF55166	Hedgehog/DD-peptidase
Rpal_4671	SSF158757	SMc04008-like
Rpal_4673	SSF50800	PK beta-barrel domain-like
Rpal_4673	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_4673	SSF52935	PK C-terminal domain-like
Rpal_4674	SSF82784	OsmC-like
Rpal_4675	SSF53474	alpha/beta-Hydrolases
Rpal_4676	SSF48452	TPR-like
Rpal_4677	SSF57840	Ribosomal protein L36
Rpal_4678	SSF51556	Metallo-dependent hydrolases
Rpal_4679	SSF56784	HAD-like
Rpal_4680	SSF55826	YbaK/ProRS associated domain
Rpal_4682	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4683	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4687	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4688	SSF52151	FabD/lysophospholipase-like
Rpal_4689	SSF55797	PR-1-like
Rpal_4690	SSF54368	Glutamine synthetase, N-terminal domain
Rpal_4690	SSF55931	Glutamine synthetase/guanido kinase
Rpal_4692	SSF56601	beta-lactamase/transpeptidase-like
Rpal_4694	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Rpal_4694	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rpal_4696	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4696	SSF53790	Tetrapyrrole methylase
Rpal_4696	SSF75615	Siroheme synthase middle domains-like
Rpal_4697	SSF51645	Malate synthase G
Rpal_4698	SSF69047	Hypothetical protein YjbJ
Rpal_4701	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4704	SSF52172	CheY-like
Rpal_4704	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_4706	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_4706	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_4708	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4710	SSF50692	ADC-like
Rpal_4710	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_4712	SSF51206	cAMP-binding domain-like
Rpal_4712	SSF81324	Voltage-gated potassium channels
Rpal_4713	SSF46785	"Winged helix" DNA-binding domain
Rpal_4713	SSF51206	cAMP-binding domain-like
Rpal_4714	SSF46626	Cytochrome c
Rpal_4715	SSF159594	XCC0632-like
Rpal_4716	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4717	SSF52091	SpoIIaa-like
Rpal_4719	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4719	SSF52210	Succinyl-CoA synthetase domains
Rpal_4719	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4719	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4720	SSF54631	CBS-domain pair
Rpal_4721	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4721	SSF56112	Protein kinase-like (PK-like)
Rpal_4722	SSF53474	alpha/beta-Hydrolases
Rpal_4723	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_4724	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_4725	SSF54631	CBS-domain pair
Rpal_4726	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4726	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4726	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4727	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_4727	SSF52172	CheY-like
Rpal_4728	SSF52172	CheY-like
Rpal_4729	SSF46785	"Winged helix" DNA-binding domain
Rpal_4729	SSF51206	cAMP-binding domain-like
Rpal_4730	SSF53383	PLP-dependent transferases
Rpal_4736	SSF54862	4Fe-4S ferredoxins
Rpal_4738	SSF50692	ADC-like
Rpal_4738	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rpal_4738	SSF54292	2Fe-2S ferredoxin-like
Rpal_4738	SSF54862	4Fe-4S ferredoxins
Rpal_4739	SSF140490	Nqo1C-terminal domain-like
Rpal_4739	SSF142019	Nqo1 FMN-binding domain-like
Rpal_4739	SSF142984	Nqo1 middle domain-like
Rpal_4740	SSF52833	Thioredoxin-like
Rpal_4741	SSF143243	Nqo5-like
Rpal_4741	SSF56762	HydB/Nqo4-like
Rpal_4742	SSF56770	HydA/Nqo6-like
Rpal_4744	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4744	SSF90123	ABC transporter transmembrane region
Rpal_4745	SSF56601	beta-lactamase/transpeptidase-like
Rpal_4746	SSF56801	Acetyl-CoA synthetase-like
Rpal_4747	SSF52833	Thioredoxin-like
Rpal_4748	SSF46689	Homeodomain-like
Rpal_4748	SSF53098	Ribonuclease H-like
Rpal_4749	SSF53098	Ribonuclease H-like
Rpal_4750	SSF56112	Protein kinase-like (PK-like)
Rpal_4756	SSF48371	ARM repeat
Rpal_4759	SSF46689	Homeodomain-like
Rpal_4761	SSF54975	Acylphosphatase/BLUF domain-like
Rpal_4762	SSF46785	"Winged helix" DNA-binding domain
Rpal_4762	SSF53850	Periplasmic binding protein-like II
Rpal_4763	SSF101874	YceI-like
Rpal_4764	SSF55469	FMN-dependent nitroreductase-like
Rpal_4765	SSF53213	LigB-like
Rpal_4766	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4768	SSF52799	(Phosphotyrosine protein) phosphatases II
Rpal_4770	SSF56918	Light-harvesting complex subunits
Rpal_4771	SSF56918	Light-harvesting complex subunits
Rpal_4774	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4775	SSF141371	PilZ domain-like
Rpal_4776	SSF51430	NAD(P)-linked oxidoreductase
Rpal_4777	SSF55826	YbaK/ProRS associated domain
Rpal_4778	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_4779	SSF54909	Dimeric alpha+beta barrel
Rpal_4780	SSF103481	Multidrug resistance efflux transporter EmrE
Rpal_4783	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4784	SSF47240	Ferritin-like
Rpal_4787	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4788	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4789	SSF143548	Serine metabolism enzymes domain
Rpal_4789	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4789	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rpal_4789	SSF55021	ACT-like
Rpal_4790	SSF53383	PLP-dependent transferases
Rpal_4791	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4792	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4793	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4794	SSF47616	GST C-terminal domain-like
Rpal_4794	SSF52833	Thioredoxin-like
Rpal_4795	SSF56925	OMPA-like
Rpal_4796	SSF56925	OMPA-like
Rpal_4797	SSF103473	MFS general substrate transporter
Rpal_4798	SSF53738	Phosphoglucomutase, first 3 domains
Rpal_4798	SSF55957	Phosphoglucomutase, C-terminal domain
Rpal_4800	SSF51395	FMN-linked oxidoreductases
Rpal_4801	SSF52096	ClpP/crotonase
Rpal_4802	SSF52172	CheY-like
Rpal_4803	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4803	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rpal_4804	SSF52091	SpoIIaa-like
Rpal_4805	SSF47413	lambda repressor-like DNA-binding domains
Rpal_4806	SSF50447	Translation proteins
Rpal_4806	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4806	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_4806	SSF54980	EF-G C-terminal domain-like
Rpal_4809	SSF53383	PLP-dependent transferases
Rpal_4810	SSF47616	GST C-terminal domain-like
Rpal_4810	SSF52833	Thioredoxin-like
Rpal_4812	SSF50952	Soluble quinoprotein glucose dehydrogenase
Rpal_4813	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rpal_4814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4815	SSF51430	NAD(P)-linked oxidoreductase
Rpal_4817	SSF56784	HAD-like
Rpal_4819	SSF52096	ClpP/crotonase
Rpal_4820	SSF47616	GST C-terminal domain-like
Rpal_4820	SSF52833	Thioredoxin-like
Rpal_4821	SSF55718	SCP-like
Rpal_4821	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_4824	SSF46600	C-terminal UvrC-binding domain of UvrB
Rpal_4824	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4825	SSF143100	TTHA1013/TTHA0281-like
Rpal_4826	SSF54786	YcfA/nrd intein domain
Rpal_4827	SSF143011	RelE-like
Rpal_4828	SSF47413	lambda repressor-like DNA-binding domains
Rpal_4830	SSF53901	Thiolase-like
Rpal_4832	SSF54427	NTF2-like
Rpal_4835	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4836	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_4838	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4838	SSF81271	TGS-like
Rpal_4839	SSF53178	Peptidyl-tRNA hydrolase-like
Rpal_4840	SSF50715	Ribosomal protein L25-like
Rpal_4843	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4844	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rpal_4846	SSF53271	PRTase-like
Rpal_4847	SSF52121	Lumazine synthase
Rpal_4849	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4850	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_4850	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4851	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4851	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4852	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_4852	SSF52172	CheY-like
Rpal_4853	SSF46785	"Winged helix" DNA-binding domain
Rpal_4854	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rpal_4855	SSF118116	DNA mismatch repair protein MutL
Rpal_4855	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_4855	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4856	SSF75620	Release factor
Rpal_4857	SSF63411	LuxS/MPP-like metallohydrolase
Rpal_4858	SSF63411	LuxS/MPP-like metallohydrolase
Rpal_4861	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rpal_4861	SSF50677	ValRS/IleRS/LeuRS editing domain
Rpal_4861	SSF52374	Nucleotidylyl transferase
Rpal_4862	SSF51161	Trimeric LpxA-like enzymes
Rpal_4863	SSF52374	Nucleotidylyl transferase
Rpal_4863	SSF82114	Riboflavin kinase-like
Rpal_4864	SSF55895	Ribonuclease Rh-like
Rpal_4869	SSF56935	Porins
Rpal_4871	SSF56935	Porins
Rpal_4872	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_4873	SSF50182	Sm-like ribonucleoproteins
Rpal_4873	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rpal_4873	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rpal_4874	SSF55811	Nudix
Rpal_4875	SSF56300	Metallo-dependent phosphatases
Rpal_4878	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_4879	SSF47413	lambda repressor-like DNA-binding domains
Rpal_4881	SSF47090	PGBD-like
Rpal_4881	SSF53955	Lysozyme-like
Rpal_4882	SSF53822	Periplasmic binding protein-like I
Rpal_4883	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4884	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4888	SSF51395	FMN-linked oxidoreductases
Rpal_4889	SSF53850	Periplasmic binding protein-like II
Rpal_4891	SSF161098	MetI-like
Rpal_4892	SSF161098	MetI-like
Rpal_4893	SSF50331	MOP-like
Rpal_4893	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4894	SSF50331	MOP-like
Rpal_4894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4895	SSF51905	FAD/NAD(P)-binding domain
Rpal_4895	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_4896	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_4896	SSF46785	"Winged helix" DNA-binding domain
Rpal_4899	SSF50475	FMN-binding split barrel
Rpal_4900	SSF46689	Homeodomain-like
Rpal_4900	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rpal_4901	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_4901	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_4901	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4902	SSF111369	HlyD-like secretion proteins
Rpal_4903	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rpal_4904	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rpal_4904	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_4904	SSF52172	CheY-like
Rpal_4904	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4904	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_4905	SSF69047	Hypothetical protein YjbJ
Rpal_4906	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rpal_4907	SSF144266	MPN010-like
Rpal_4908	SSF56801	Acetyl-CoA synthetase-like
Rpal_4909	SSF46785	"Winged helix" DNA-binding domain
Rpal_4909	SSF51206	cAMP-binding domain-like
Rpal_4911	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_4912	SSF56529	FAH
Rpal_4913	SSF47616	GST C-terminal domain-like
Rpal_4913	SSF52833	Thioredoxin-like
Rpal_4914	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rpal_4914	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rpal_4915	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_4917	SSF56935	Porins
Rpal_4919	SSF51261	Duplicated hybrid motif
Rpal_4920	SSF63829	Calcium-dependent phosphotriesterase
Rpal_4921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4921	SSF81923	Double Clp-N motif
Rpal_4922	SSF50800	PK beta-barrel domain-like
Rpal_4923	SSF54001	Cysteine proteinases
Rpal_4924	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4925	SSF53474	alpha/beta-Hydrolases
Rpal_4926	SSF48600	Chorismate mutase II
Rpal_4927	SSF53383	PLP-dependent transferases
Rpal_4928	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_4928	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4931	SSF143865	CorA soluble domain-like
Rpal_4931	SSF144083	Magnesium transport protein CorA, transmembrane region
Rpal_4932	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_4934	SSF56801	Acetyl-CoA synthetase-like
Rpal_4935	SSF52980	Restriction endonuclease-like
Rpal_4940	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_4940	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_4941	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4942	SSF53383	PLP-dependent transferases
Rpal_4943	SSF56059	Glutathione synthetase ATP-binding domain-like
Rpal_4944	SSF53383	PLP-dependent transferases
Rpal_4945	SSF56300	Metallo-dependent phosphatases
Rpal_4946	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_4950	SSF52821	Rhodanese/Cell cycle control phosphatase
Rpal_4952	SSF51905	FAD/NAD(P)-binding domain
Rpal_4952	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_4953	SSF51905	FAD/NAD(P)-binding domain
Rpal_4953	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rpal_4954	SSF46626	Cytochrome c
Rpal_4956	SSF46626	Cytochrome c
Rpal_4957	SSF56524	Oxidoreductase molybdopterin-binding domain
Rpal_4957	SSF81296	E set domains
Rpal_4958	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Rpal_4958	SSF56300	Metallo-dependent phosphatases
Rpal_4959	SSF81296	E set domains
Rpal_4961	SSF46626	Cytochrome c
Rpal_4962	SSF46626	Cytochrome c
Rpal_4963	SSF143744	GlcG-like
Rpal_4964	SSF52833	Thioredoxin-like
Rpal_4966	SSF52833	Thioredoxin-like
Rpal_4967	SSF46785	"Winged helix" DNA-binding domain
Rpal_4969	SSF75169	DsrEFH-like
Rpal_4972	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_4972	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_4972	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_4973	SSF111369	HlyD-like secretion proteins
Rpal_4974	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4975	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4976	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_4977	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_4978	SSF48150	DNA-glycosylase
Rpal_4978	SSF55811	Nudix
Rpal_4980	SSF52833	Thioredoxin-like
Rpal_4983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4983	SSF75553	Smc hinge domain
Rpal_4984	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_4985	SSF140478	LemA-like
Rpal_4987	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4988	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_4990	SSF53271	PRTase-like
Rpal_4991	SSF52317	Class I glutamine amidotransferase-like
Rpal_4991	SSF56322	ADC synthase
Rpal_4993	SSF82057	Prokaryotic SH3-related domain
Rpal_4994	SSF56925	OMPA-like
Rpal_4996	SSF56801	Acetyl-CoA synthetase-like
Rpal_4997	SSF48452	TPR-like
Rpal_4998	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_4999	SSF102114	Radical SAM enzymes
Rpal_5002	SSF53850	Periplasmic binding protein-like II
Rpal_5003	SSF103473	MFS general substrate transporter
Rpal_5004	SSF52172	CheY-like
Rpal_5005	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_5005	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5006	SSF56300	Metallo-dependent phosphatases
Rpal_5007	SSF53850	Periplasmic binding protein-like II
Rpal_5008	SSF141868	EAL domain-like
Rpal_5008	SSF52172	CheY-like
Rpal_5012	SSF55811	Nudix
Rpal_5013	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5014	SSF56784	HAD-like
Rpal_5015	SSF52172	CheY-like
Rpal_5017	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rpal_5018	SSF52972	ITPase-like
Rpal_5019	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5020	SSF52788	Phosphotyrosine protein phosphatases I
Rpal_5022	SSF53720	ALDH-like
Rpal_5024	SSF55205	EPT/RTPC-like
Rpal_5027	SSF51206	cAMP-binding domain-like
Rpal_5027	SSF51905	FAD/NAD(P)-binding domain
Rpal_5029	SSF54427	NTF2-like
Rpal_5032	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_5033	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_5033	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_5037	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_5038	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5039	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rpal_5040	SSF46785	"Winged helix" DNA-binding domain
Rpal_5040	SSF55781	GAF domain-like
Rpal_5041	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_5042	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_5042	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5043	SSF50199	Staphylococcal nuclease
Rpal_5044	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5045	SSF55073	Nucleotide cyclase
Rpal_5046	SSF53067	Actin-like ATPase domain
Rpal_5047	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rpal_5047	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5048	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5049	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5052	SSF50156	PDZ domain-like
Rpal_5052	SSF50494	Trypsin-like serine proteases
Rpal_5055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5058	SSF53822	Periplasmic binding protein-like I
Rpal_5059	SSF50156	PDZ domain-like
Rpal_5059	SSF50494	Trypsin-like serine proteases
Rpal_5060	SSF53850	Periplasmic binding protein-like II
Rpal_5062	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5064	SSF51445	(Trans)glycosidases
Rpal_5065	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5066	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_5067	SSF75005	Arabinanase/levansucrase/invertase
Rpal_5070	SSF52317	Class I glutamine amidotransferase-like
Rpal_5071	SSF53383	PLP-dependent transferases
Rpal_5072	SSF56801	Acetyl-CoA synthetase-like
Rpal_5073	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rpal_5074	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_5075	SSF47336	ACP-like
Rpal_5076	SSF56801	Acetyl-CoA synthetase-like
Rpal_5077	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5078	SSF55681	Class II aaRS and biotin synthetases
Rpal_5079	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_5079	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_5080	SSF47336	ACP-like
Rpal_5081	SSF51182	RmlC-like cupins
Rpal_5083	SSF54862	4Fe-4S ferredoxins
Rpal_5084	SSF51905	FAD/NAD(P)-binding domain
Rpal_5084	SSF54373	FAD-linked reductases, C-terminal domain
Rpal_5085	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_5085	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_5086	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_5088	SSF51569	Aldolase
Rpal_5089	SSF53383	PLP-dependent transferases
Rpal_5090	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rpal_5090	SSF82649	SufE/NifU
Rpal_5091	SSF89360	HesB-like domain
Rpal_5093	SSF46548	alpha-helical ferredoxin
Rpal_5096	SSF53146	Nitrogenase accessory factor-like
Rpal_5097	SSF53807	"Helical backbone" metal receptor
Rpal_5098	SSF53807	"Helical backbone" metal receptor
Rpal_5099	SSF53807	"Helical backbone" metal receptor
Rpal_5100	SSF53807	"Helical backbone" metal receptor
Rpal_5101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5104	SSF159203	NifT/FixU-like
Rpal_5107	SSF48371	ARM repeat
Rpal_5108	SSF48452	TPR-like
Rpal_5109	SSF89360	HesB-like domain
Rpal_5110	SSF54862	4Fe-4S ferredoxins
Rpal_5111	SSF102114	Radical SAM enzymes
Rpal_5111	SSF53146	Nitrogenase accessory factor-like
Rpal_5112	SSF54862	4Fe-4S ferredoxins
Rpal_5113	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5113	SSF55781	GAF domain-like
Rpal_5114	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5116	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5117	SSF50037	C-terminal domain of transcriptional repressors
Rpal_5119	SSF158472	HAMP domain-like
Rpal_5119	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_5120	SSF158472	HAMP domain-like
Rpal_5120	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_5122	SSF51649	RuBisCo, C-terminal domain
Rpal_5122	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rpal_5123	SSF51569	Aldolase
Rpal_5124	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_5124	SSF52922	TK C-terminal domain-like
Rpal_5125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5126	SSF56655	Carbohydrate phosphatase
Rpal_5127	SSF53474	alpha/beta-Hydrolases
Rpal_5128	SSF46785	"Winged helix" DNA-binding domain
Rpal_5128	SSF55781	GAF domain-like
Rpal_5129	SSF53850	Periplasmic binding protein-like II
Rpal_5130	SSF161098	MetI-like
Rpal_5131	SSF50331	MOP-like
Rpal_5131	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5132	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_5133	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_5135	SSF69118	AhpD-like
Rpal_5136	SSF53639	AraD/HMP-PK domain-like
Rpal_5137	SSF53613	Ribokinase-like
Rpal_5138	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5139	SSF50129	GroES-like
Rpal_5139	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5140	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rpal_5141	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_5142	SSF56784	HAD-like
Rpal_5143	SSF103473	MFS general substrate transporter
Rpal_5144	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_5145	SSF46689	Homeodomain-like
Rpal_5145	SSF51182	RmlC-like cupins
Rpal_5146	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rpal_5146	SSF51569	Aldolase
Rpal_5146	SSF89000	post-HMGL domain-like
Rpal_5147	SSF47741	CO dehydrogenase ISP C-domain like
Rpal_5147	SSF54292	2Fe-2S ferredoxin-like
Rpal_5148	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rpal_5148	SSF56003	Molybdenum cofactor-binding domain
Rpal_5149	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
Rpal_5149	SSF56176	FAD-binding/transporter-associated domain-like
Rpal_5150	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rpal_5151	SSF56529	FAH
Rpal_5151	SSF63433	Fumarylacetoacetate hydrolase, FAH, N-terminal domain
Rpal_5152	SSF47616	GST C-terminal domain-like
Rpal_5152	SSF52833	Thioredoxin-like
Rpal_5153	SSF51182	RmlC-like cupins
Rpal_5154	SSF56281	Metallo-hydrolase/oxidoreductase
Rpal_5156	SSF51905	FAD/NAD(P)-binding domain
Rpal_5157	SSF46785	"Winged helix" DNA-binding domain
Rpal_5158	SSF48452	TPR-like
Rpal_5158	SSF52129	Caspase-like
Rpal_5159	SSF103088	OmpA-like
Rpal_5160	SSF51230	Single hybrid motif
Rpal_5161	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rpal_5161	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rpal_5161	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rpal_5165	SSF158472	HAMP domain-like
Rpal_5165	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_5166	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rpal_5166	SSF52374	Nucleotidylyl transferase
Rpal_5167	SSF53850	Periplasmic binding protein-like II
Rpal_5168	SSF160246	EspE N-terminal domain-like
Rpal_5168	SSF53448	Nucleotide-diphospho-sugar transferases
Rpal_5169	SSF52833	Thioredoxin-like
Rpal_5172	SSF158472	HAMP domain-like
Rpal_5172	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rpal_5174	SSF51395	FMN-linked oxidoreductases
Rpal_5175	SSF53850	Periplasmic binding protein-like II
Rpal_5176	SSF46785	"Winged helix" DNA-binding domain
Rpal_5176	SSF53850	Periplasmic binding protein-like II
Rpal_5177	SSF54506	Diaminopimelate epimerase-like
Rpal_5178	SSF51556	Metallo-dependent hydrolases
Rpal_5179	SSF89562	RraA-like
Rpal_5180	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_5180	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5181	SSF51556	Metallo-dependent hydrolases
Rpal_5182	SSF48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Rpal_5183	SSF53213	LigB-like
Rpal_5184	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5184	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rpal_5186	SSF101386	all-alpha NTP pyrophosphatases
Rpal_5189	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rpal_5190	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5193	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_5193	SSF48452	TPR-like
Rpal_5194	SSF52743	Subtilisin-like
Rpal_5196	SSF50331	MOP-like
Rpal_5196	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5197	SSF161098	MetI-like
Rpal_5198	SSF53850	Periplasmic binding protein-like II
Rpal_5199	SSF46785	"Winged helix" DNA-binding domain
Rpal_5199	SSF50331	MOP-like
Rpal_5200	SSF50331	MOP-like
Rpal_5202	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rpal_5202	SSF52922	TK C-terminal domain-like
Rpal_5202	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rpal_5202	SSF54862	4Fe-4S ferredoxins
Rpal_5203	SSF46548	alpha-helical ferredoxin
Rpal_5203	SSF51971	Nucleotide-binding domain
Rpal_5203	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rpal_5203	SSF63380	Riboflavin synthase domain-like
Rpal_5204	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Rpal_5204	SSF53098	Ribonuclease H-like
Rpal_5204	SSF56672	DNA/RNA polymerases
Rpal_5204	SSF88723	PIN domain-like
Rpal_5205	SSF53271	PRTase-like
Rpal_5208	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rpal_5209	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rpal_5210	SSF52768	Arginase/deacetylase
Rpal_5212	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5214	SSF110857	Gamma-glutamyl cyclotransferase-like
Rpal_5215	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rpal_5218	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5220	SSF52172	CheY-like
Rpal_5222	SSF69118	AhpD-like
Rpal_5223	SSF50621	Alanine racemase C-terminal domain-like
Rpal_5223	SSF51419	PLP-binding barrel
Rpal_5225	SSF48557	L-aspartase-like
Rpal_5226	SSF52833	Thioredoxin-like
Rpal_5228	SSF52218	Flavoproteins
Rpal_5229	SSF46785	"Winged helix" DNA-binding domain
Rpal_5229	SSF53850	Periplasmic binding protein-like II
Rpal_5230	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rpal_5230	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5231	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_5231	SSF52467	DHS-like NAD/FAD-binding domain
Rpal_5232	SSF52402	Adenine nucleotide alpha hydrolases-like
Rpal_5233	SSF89028	Cobalamin adenosyltransferase-like
Rpal_5236	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_5236	SSF52172	CheY-like
Rpal_5236	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5237	SSF52374	Nucleotidylyl transferase
Rpal_5238	SSF48150	DNA-glycosylase
Rpal_5239	SSF47598	Ribbon-helix-helix
Rpal_5239	SSF55021	ACT-like
Rpal_5240	SSF56935	Porins
Rpal_5241	SSF50346	PRC-barrel domain
Rpal_5242	SSF51011	Glycosyl hydrolase domain
Rpal_5242	SSF51445	(Trans)glycosidases
Rpal_5247	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rpal_5247	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rpal_5249	SSF56300	Metallo-dependent phosphatases
Rpal_5250	SSF51283	dUTPase-like
Rpal_5251	SSF53383	PLP-dependent transferases
Rpal_5252	SSF52266	SGNH hydrolase
Rpal_5253	SSF52266	SGNH hydrolase
Rpal_5255	SSF110069	ApaG-like
Rpal_5257	SSF118352	HSP33 redox switch-like
Rpal_5257	SSF64397	Hsp33 domain
Rpal_5258	SSF53671	Aspartate/ornithine carbamoyltransferase
Rpal_5259	SSF53383	PLP-dependent transferases
Rpal_5261	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_5261	SSF52172	CheY-like
Rpal_5262	SSF109755	PhoU-like
Rpal_5263	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5264	SSF161098	MetI-like
Rpal_5265	SSF161098	MetI-like
Rpal_5266	SSF53850	Periplasmic binding protein-like II
Rpal_5267	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_5267	SSF55785	PYP-like sensor domain (PAS domain)
Rpal_5267	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5270	SSF103088	OmpA-like
Rpal_5271	SSF88713	Glycoside hydrolase/deacetylase
Rpal_5272	SSF51735	NAD(P)-binding Rossmann-fold domains
Rpal_5273	SSF47413	lambda repressor-like DNA-binding domains
Rpal_5273	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5274	SSF53850	Periplasmic binding protein-like II
Rpal_5275	SSF158472	HAMP domain-like
Rpal_5275	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5276	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_5276	SSF52172	CheY-like
Rpal_5276	SSF55781	GAF domain-like
Rpal_5276	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5277	SSF46894	C-terminal effector domain of the bipartite response regulators
Rpal_5277	SSF52172	CheY-like
Rpal_5278	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rpal_5278	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rpal_5282	SSF141523	L,D-transpeptidase catalytic domain-like
Rpal_5283	SSF53850	Periplasmic binding protein-like II
Rpal_5284	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_5284	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_5285	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rpal_5285	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rpal_5286	SSF69118	AhpD-like
Rpal_5287	SSF103473	MFS general substrate transporter
Rpal_5288	SSF103473	MFS general substrate transporter
Rpal_5289	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rpal_5290	SSF56935	Porins
Rpal_5294	SSF53822	Periplasmic binding protein-like I
Rpal_5295	SSF103473	MFS general substrate transporter
Rpal_5296	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5298	SSF159245	AttH-like
Rpal_5299	SSF161084	MAPEG domain-like
Rpal_5300	SSF53822	Periplasmic binding protein-like I
Rpal_5301	SSF56925	OMPA-like
Rpal_5301	SSF69917	OMPT-like
Rpal_5302	SSF110942	HSP90 C-terminal domain
Rpal_5302	SSF54211	Ribosomal protein S5 domain 2-like
Rpal_5302	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5303	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rpal_5303	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rpal_5304	SSF52172	CheY-like
Rpal_5307	SSF100950	NagB/RpiA/CoA transferase-like
Rpal_5308	SSF53167	Purine and uridine phosphorylases
Rpal_5309	SSF56796	Dehydroquinate synthase-like
Rpal_5310	SSF56801	Acetyl-CoA synthetase-like
Rpal_5311	SSF54909	Dimeric alpha+beta barrel
Rpal_5312	SSF46955	Putative DNA-binding domain
Rpal_5313	SSF47819	HRDC-like
Rpal_5313	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rpal_5316	SSF56801	Acetyl-CoA synthetase-like
Rpal_5317	SSF109604	HD-domain/PDEase-like
Rpal_5317	SSF52172	CheY-like
Rpal_5319	SSF53474	alpha/beta-Hydrolases
Rpal_5321	SSF55068	Peptide methionine sulfoxide reductase
Rpal_5323	SSF46992	Ribosomal protein S20