        dnaA    1801 ..    1831 +  -4.7  -3.14683   TTGGCGCCGCATCCG       GCTGCCGGG CCCCTCCATCATA TCCGGCAGC       TTCATCACACGATGT  48 188
   Rpal_0002    3163 ..    3182 +   -10  -2.52896   GATCTCTACGATGAA            TTGTCCGC TGAC GCGGACGA             TGGATTGCCGGGTCG  59 198
        recF    4504 ..    4517 +  -3.8  -3.72576   GCACGACTTTGCGCT               GGTG ACGACC CACC                TTTCATGGCACAAAG  56 156
        gyrB    7084 ..    7113 + -14.4  -3.12895   GTACCGCATTTCTTC       TGTGATGGCCGGG CTCGT CCCGGCCATC-CA       TGTCTTCGTCGCGGC  80 78
   Rpal_0006    9071 ..    9091 +  -5.4  -3.60627   GGCTGCGGGAGATCA           GCGTCTGGC CGAA GCCGGA-GC            TTTGCGGTGGCGTCA  54 160
   Rpal_0024   25696 ..   25733 +  -8.3  -3.22388   TACGAGCGAAGCGAA   GCAATCCAGAGGCTCCG TACT CGGCGTTCCTGGATGGC    TTAGTCGCTTCGCTC  58 59
   Rpal_0027   30315 ..   30332 + -12.7  -4.98531   ATCAAAATCCGAAAA             GCCGCCA GACC TGGCGGC              TTTTTCGTTTGAGCC 100 178
   Rpal_0028   31480 ..   31512 + -14.9  -3.19138   GGCGTGAAAAACGAA      GCGGGACAGCAAC GCGAACG GTCGCTGTCCCGC      TATTCGTCGTCCTTT  80 34
   Rpal_0032   37073 ..   37117 +  -7.2  -2.71263   TCAAAGGCATCGCGT C-GGAT-TTCTGAGGCTTGGCG GAG CGCCAAGCCTCATCACAACCAG TGATTGCACAGGATT  52 15
   Rpal_0033   38195 ..   38210 +  -3.3  -3.78778   CGGCACCAGATAGCG              CATCA GATCGA TGATG               TTCTTGGTGTCGTAG  56 476
   Rpal_0035   40436 ..   40468 +    -9  -3.75105   CGTCGTGGTGGCGCT      GAGCGGCCTCAGCC GCGCA GGCTGCCGCCGGTC      TTCTTGGTGACTTCC  71 24
   Rpal_0042   48018 ..   48061 + -11.6  -3.64703   CGTCGAGCCGCACCA GTTCGCCGAGCGCCGGTGCCC GCA GAGCATCG-CGCGCGGCCAGC TTTGCCTCGCGCCCC  75 485
   Rpal_0045   50582 ..   50615 +  -9.5  -3.17392   TGTAACGACTTCTCT     CGGAACGCGGCGTCCT TAA GGGACGCCGC-TGCGG     TTCGCTTACGCGGTC  61 36
   Rpal_0047   52642 ..   52669 +  -6.8  -3.65351   CCCGTCCGGCGGTTC        CGGCGCCCGAGC GGCA GCTCGCGCCGCG         TTTCGGTCAAACTCC  59 53
   Rpal_0048   53588 ..   53605 +  -4.1  -4.05788   GTCGCGAGGTGATCT             CGACAAT GCCC ATTGCCG              TTTGGTTTCGCCGGC  61 29
   Rpal_0049 NONE
   Rpal_0050 NONE
   Rpal_0051 NONE
   Rpal_0052   57211 ..   57222 +  -4.4  -3.06696   GATTGCGTCGCCCTG                CTCT GACT AGAG                 TCTCTTCCCCAAACG  45 39
   Rpal_0053   57876 ..   57889 +  -5.2  -3.33261   CGCGCTCACTGTCTC               GCGG AAACCA CCGC                TTGTGGAACTTCCGC  50 41
   Rpal_0054   59047 ..   59058 +  -7.2   -3.8211   GTCGTCGTTGGTCAG                CGCG CGAT CGCG                 TTGTTATCGATACGG  65 475
   Rpal_0064   68589 ..   68604 +  -6.1   -3.9941   TCGACCGGCTGAAGG              CCGAC GATCCG GTCGG               TTTCGTTCTGCGCGG  64 54
         cmk   70027 ..   70059 +  -7.7  -2.73542   GCCGTTCGAGCGGGC      CGGCGTCGGGT CTAATCGACCA AACCGACGCCG      TCATTGGAGGTTCGC  52 11
        rpsA   72066 ..   72088 + -18.4   -4.8622   ACCTCACGACATCAA           GGGCTCCGGC ATT GCCGGGGCCC           TTTTTCGTTGCGCGC 100 52
   Rpal_0068   73256 ..   73279 +  -8.1  -3.65542   GTCAGTGATCTCTGC          CCGCG-GGGC GTGCA GCCCGTGCGG          TATTTTGACCCTGAA  65 33
        ihfB NONE
   Rpal_0070 NONE
   Rpal_0071 NONE
   Rpal_0072 NONE
        trpA   76937 ..   76966 +  -7.2  -2.78384   ATCGAAGCAGGACGA      TGGTCTGGACGGGGC CCT GCCCCG-CC-G-CCA      TATCCTGACAACGCC  52 46
   Rpal_0074 NONE
   Rpal_0075   79460 ..   79479 + -16.4  -3.55801   GCCGGAAAAGCAAAA            CGGCCGGC GAAT GCCGGCCG             TTTCAGAACGTTCAT  91 151
   Rpal_0087   97655 ..   97669 +  -3.4  -3.64162   CCGTACGCAGATCAC               GCGGAC GAC GCTCGC               TTTGGGATCCTTGGT  51 98
   Rpal_0089 NONE
   Rpal_0090  101846 ..  101871 +  -6.7   -3.4268   GATCTCGGGGTCGAT         TTCGTCCGGCC TCAT GGTCGGGCGCG          TCTTTGACATTCTGG  56 69
   Rpal_0097 NONE
   Rpal_0098 NONE
   Rpal_0099 NONE
   Rpal_0100  110676 ..  110691 +  -5.4  -3.28924   TTGGTTGCCGCAAAC              CGTCGA ATGA TCGATG               TTGTCGCAACGGATC  50 80
   Rpal_0101  111258 ..  111280 + -16.2  -3.06183   CGCGGAGCCTGTCAT           CGGGCGGCGC TTC GCGCCGACCG           TTGGCTCGCAATGAC  84 113
   Rpal_0109  121486 ..  121501 +  -6.8  -2.75957   GATGCCGGGCAGCAA              CGTCGG CAGC TCGACG               TCCTTCAAATTAGTC  48 161
   Rpal_0114  127509 ..  127532 +  -2.3   -2.5474   CACAACATGCCGACC          GCCGTCGTG ACCGGC CGCGATGGA           ATCTTCTCGATCGCA  38 430
   Rpal_0117 NONE
   Rpal_0118  131520 ..  131544 + -20.1  -5.22039   TGCGACCATGAAAAA          TCCCGGCAGGT CCG ACCTGCCGGGA          TTTTTTGAATTTCGG 100 70
   Rpal_0120 NONE
   Rpal_0121 NONE
   Rpal_0122 NONE
   Rpal_0123 NONE
   Rpal_0124 NONE
   Rpal_0125 NONE
   Rpal_0126  141005 ..  141023 +  -5.2  -2.65815   ACCTCCCATTCGGCG             TCCGGATT GGC GAGCCGGA             TCGTATCCATGTAGC  44 333
   Rpal_0133  147648 ..  147667 +    -7  -2.53263   AATGGCGCGCACTCG            CCGCCGCG CGAG TGAGGCGG             TCAGTTACCGGTGGC  48 11
   Rpal_0148  165510 ..  165565 + -21.3  -3.29461   CAGGCCGAGCGACCG TGTCGCC-TCGGCAGCCGGGCGAA-GCG GAT CGTGTTCGCCCGGCGGCCGGCGGCG-CA TTCTGGACCGGATTG 100 66
        rplU  168193 ..  168205 +  -5.5   -3.2614   AAAAAAGCGGGATGA                TTCCG TAA CGGGA                TTCATCTAAAAGGTA  52 65
        rpmA  168581 ..  168606 + -16.1  -5.31519   CAACTAAGGGCTCCA         GGGGAGGCGGG AAAA CCGGCCTCCCC          TTTTTCTTTGCGTAT 100 91
   Rpal_0153  169286 ..  169309 + -18.2  -3.54488   ATTGAAGTGAACGGA          TCGGCCGGGT TGTG ACCCGGCCGA           TGTTGTTTCGAGACA 100 62
   Rpal_0154  169658 ..  169716 +  -2.2  -3.57144   CGGGATCTGACGCCC GCGAGC--AGGCGCGTTCAATCGGCGCT TAACC ATCGCCGGCTGATCGCGCCGCCGCCCAC TTTGCAAATACGCGA  49 31
   Rpal_0155 NONE
        obgE  172179 ..  172195 +  -4.3  -3.42699   CCTGCCAGTCGCCCG              CTTTGCG CGC CGCGACG              TTGTGATCGATACCT  51 130
   Rpal_0158  173361 ..  173387 +  -5.8  -3.73775   GGCAGTCCTTGGGTG        CCCCTGC-CGC GTGTTA GCAAGCAGGGG         TTTCGTGGACGTCCG  60 43
        proA NONE
        nadD  175557 ..  175569 +  -4.7  -3.57792   GTGACTTTTGCGAGA                CGGCG GGG CGGCG                TTTACGGCTCCCTCA  55 89
   Rpal_0161  176215 ..  176256 + -14.4  -3.17527   GTGTCTGACGGATGA GTAGCG-CGGCTCTCGCGC AAAGG GCGCGTGAGCCGATGCGAC TATTGATCCTGGCTG  80 80
   Rpal_0162 NONE
   Rpal_0163 NONE
   Rpal_0164  179551 ..  179570 + -16.4   -4.7254   ATGTATTTGCTGAAA            GGGCGGCC GGTG GGCCGCCC             TTTTTGCTGCGCGGT 100 60
   Rpal_0165 NONE
   Rpal_0166  181508 ..  181522 + -11.4  -2.61216   AGCAGTCCACAGCTC               GGCGCA CTG TGCGCC               TGGATTGCTTCGTCG  62 83
   Rpal_0168 NONE
   Rpal_0169  184435 ..  184445 +  -2.4  -4.56597   CGCTGCTCAGGCTTA                 GCCG CGG CGCC                 TTTTTCAACACGCAA  68 25
   Rpal_0175  191025 ..  191050 + -13.3  -5.08255   CGTCACGTGACAAAA         GCCTGCCGC CGATTGTA GCGGCAGGC          TTTTCTTTTGCGCGT 100 124
        xerC NONE
   Rpal_0178  195447 ..  195465 + -13.2  -2.84602   GTGGCGGCGAACCAG             CGAAGCTG CAG CAGCTTCG             GTTTGGTGACGTCGA  69 276
   Rpal_0191 NONE
   Rpal_0192  212341 ..  212356 +    -6  -2.87931   CGGAACGGGCTGCGC              GGCGCG CTGG CGCACC               TCTCTGGCGGGTCCG  48 54
   Rpal_0195  215734 ..  215754 + -15.4  -5.26119   ACCTGACGGATCGAA            GCCCCGGC CCAGT GCCGGGGC            TTTTGTTTTTGGGCA 100 500
   Rpal_0196  216558 ..  216572 +  -2.7  -3.36515   TAGGCGCCTTGCTTG               CGCGC CAGCC GCGGG               TCTTTGACGATGCGG  48 194
   Rpal_0200 NONE
   Rpal_0201  222405 ..  222421 +  -2.1  -3.29144   CGTCACGTCATTGCC              TGTGCGG GCC CCGGCCA              TTATCAGGGACGTCA  45 87
   Rpal_0202  223155 ..  223167 +  -4.7  -2.73994   GATGCAGGCCAGCCG                GGCCG AGG CGGCG                TGATGTTCGGCAAAT  44 10
   Rpal_0203 NONE
   Rpal_0204  224060 ..  224079 +  -5.7  -3.53444   TCCGGGATGAGCTTC            GGGCGTT ACTAAC AACGTCC             TTTGGAGGGACATCC  55 129
   Rpal_0205  224937 ..  224964 +  -3.3  -3.39449   GCCGCCGAGCACCGC        GCCGAATAGCG AGTACA CGATGGTCGGC         TTCATCTTGATGAAG  48 483
   Rpal_0208  227508 ..  227523 +  -8.2  -4.82901   AGCACCGACGGCGGG              TGCGGC ATCG GCCGCG               TTTTTGTGGAGGAAC  90 356
   Rpal_0209  229533 ..  229561 + -23.9  -3.07962   GCTGCCCTCTCCAGA        GGCCCCGCCTGTG ATT CGCAGGCGGGGCC        TCTTCGCGTCTCGCG 100 65
   Rpal_0210  230431 ..  230450 +   -15   -5.4833   GGTCTAAAAGGAAAA            GCCGCGGA CGGA TCCGCGGC             TTTTTTGTTACGTGA 100 53
   Rpal_0212  232661 ..  232689 + -20.3  -3.13899   CGAAGAGAAATAATT        CCGCCGCGTCCGA GGC TCGAACGCGGCGG        TATTCATCACGAGTT  95 68
   Rpal_0219  238763 ..  238805 +  -9.9  -2.87211   GGTGCACAACAACGT CTG-GATTCCGG-GTTCGCGC TGC GCGCGCACACCGGAATGACGG TGTGTGAAGAGGGAT  61 180
   Rpal_0221  241277 ..  241302 + -19.7  -3.78953   TCACCGCAAATGAAG         GCGCGGGCCGG GTGA CCGGCTCGCGC          TTTCGTGATCCCGAT 100 98
   Rpal_0222  242096 ..  242144 +  -9.6  -3.09635   TCCGTCATGGCGAGC GCCGCGAAGCAATCCCACCTCTG TGCA CCGAGCTGG-ATTGGTTCGCCGC TTCGCTCCTCGCAAT  60 57
   Rpal_0223  242973 ..  243021 + -14.6  -3.84406   AGTCGTCCTCATCCG CC-CGTCATTCCGGG-GCACGCGC AAC GCGCGTGAGCCCGGAATCCCGCGG TTATTGTGATCGGCG  89 39
   Rpal_0224 NONE
   Rpal_0226  246427 ..  246459 + -22.1  -3.88787   GACCTTGAACCCAAA      CAAAAACGCCCGCCG GAT CGGCGGGCGTTTTCG      TTTCTGAGGCTGTCG 100 116
   Rpal_0229  249027 ..  249049 + -16.3  -4.41494   GATGTCGACAGGCAA           TGGCCGGGG CTCGT CCCCGGCCA           TTTTCGTTCGGGGTG 100 55
   Rpal_0230  249991 ..  250010 +    -7  -4.18494   TCATCAGGTTCTCGA            TGCTGCGG AACA CCGCGGCC             TTTTCGATCCGGGTG  72 329
   Rpal_0232  251776 ..  251789 +  -6.7  -3.53012   CGCAGGCGGCTGCTC               TCGCT CGAC AGCGA                TTTAGCGGCGGACAG  58 259
   Rpal_0236  255802 ..  255833 +  -4.2  -2.52464   TTTTCGGAACTTCGC      GCTCGTGTCGCGCA TTGC TGCGCGGCGGGTGA       TGCATTCACACCGCA  41 111
   Rpal_0237  256247 ..  256267 + -10.4   -4.4078   CGGATCGGTTACCAA           CGGGCCCGC AAAC GCGG-CCCG            TTTTCGTTGCGGCAG  95 43
   Rpal_0238  256641 ..  256697 +  -2.3  -3.05384   GCTGGGGCCTGGGGC CGTCGTGGTAAGCGCCGCGG-CG-CTGCC GCT GGAAGTCGTCCGCG-CATTCATCACG-CG TTCAGTCGGCCACCC  41 15
   Rpal_0239  257459 ..  257490 + -18.8  -3.81146   CCGATCCCGAAAAAG      CAAAACAGGCGCCC CGAG GGGCGCCTGTTTCG       TTGTTAGTTCGACCG 100 41
   Rpal_0247  264043 ..  264055 +  -2.6  -3.26473   CAATCCTGGTTTTTC                TGGC CATCC GCCG                TTGATGATCGTTTCC  45 142
   Rpal_0248  265669 ..  265682 +  -5.9  -3.65046   TCTGGATATCCTTGC               CGTCG ATGC CGGCG                TTCTTCAACTCCAGC  59 481
        dapF  267800 ..  267833 +  -6.8  -2.65354   ATTCGCCGGCGCGCT    CGACC-CGACTGGC GCCTGATG GCC-GTCGAGGTCG     TCACTTTCGGCTGCC  48 7
   Rpal_0252  269112 ..  269125 +  -6.7  -4.06502   AATTACTTTAGCATC               CACAC GCCG GTGTG                TTTGATTTCGGAATC  67 48
   Rpal_0257 NONE
   Rpal_0258  274918 ..  274932 +  -4.2  -3.91882   TCGCCATAGGTCTGC               CCATGC TGC GCATCG               TTCTGTTTCTCGTGA  58 32
   Rpal_0259  276610 ..  276630 + -10.3  -3.85389   GGGGTTACCGGCCGC            CGCGCTGAG TTG CACGGCGCG            TTTCGGTTGTTGGGA  76 18
   Rpal_0261  279751 ..  279777 + -21.6  -3.19192   CCTTTCGACATCTCA         CGGCCGCTTCGG ATA CCGAGGCGGCCG         TTGCGTTGAGTCGCA 100 52
   Rpal_0262  281301 ..  281311 +  -6.8  -3.03441   AGGCGCGGATGCAGT                 CGAG CAC CTCG                 TGTTCCGGCGTCATC  51 343
   Rpal_0265  285335 ..  285348 +  -3.7  -3.09015   GATCCGCGTCGCCTC               GCGGC CGTC GCAGC                TTGGATGACTGTAGG  45 351
   Rpal_0268 NONE
   Rpal_0269  289876 ..  289901 +  -9.7  -2.63596   AACGCGCAGGAATTT         GCGCGCGCGC GTTGACG GCGC-CGCGC         TGCTGTCCGATCAAG  56 39
   Rpal_0270  290407 ..  290423 +  -3.5  -3.61398   CGATGTCGCGAATCC              CGCGCAG CAG CGGCGAG              TTGTTGGAGAACAGG  51 283
   Rpal_0272  292871 ..  292881 +  -2.4  -3.31144   CCGGCGCCCAGATAC                 GCTG CGC CTGC                 TTCTAACGATCGCCA  44 276
   Rpal_0274 NONE
   Rpal_0275  294709 ..  294721 +  -3.3  -3.71848   CAGTTCCAACAGGAC                GGGCA TCA TGACC                TTGTTGCTACGCCGC  54 93
   Rpal_0276  296110 ..  296145 + -15.6  -3.01712   TCATTGTGTCCGCAA    GCT-GGCGTGCCTGATT ATT GATCAGGCATGCCCAGC    TGTTGAGCGCGACCG  81 88
   Rpal_0277 NONE
   Rpal_0278  298261 ..  298286 + -18.3  -4.57482   TGTCCGAACCGTCGA         GGGGTCCCAGC GCAA GCTGGGGCCCC          TTTCTTTATGGCTCG 100 111
   Rpal_0279 NONE
   Rpal_0280  299004 ..  299036 +  -3.6  -3.02947   AGGCTGTGTTGCCGC     CGGTCGATGGTTAA TCGCGTC TTAACC-TCG-CCG     TATCTATGGTGGCTG  43 41
   Rpal_0281 NONE
   Rpal_0282 NONE
   Rpal_0283  303964 ..  303985 +  -6.5  -3.05384   CGGCCTGAATGCTTG           GCCGGTTGT TCAC ACCATCGGC            TTGCGTCCGACCCCA  51 211
   Rpal_0284  305153 ..  305183 + -10.4   -4.2231   GCCGATCAGATCGCC      CGGCCGCG-CCAC CGTCTC GTGGACGCCGCCG       TTTTCCATGGTGATT  85 299
   Rpal_0287  307157 ..  307171 +    -7  -3.31792   GCATCGGCATCCTGC               GGCGCG ATG CCCGCC               TTCTGCGGCTCCTCG  54 348
   Rpal_0289  309498 ..  309514 + -15.1  -2.71712   TTTCATGGCCTAGTC              CGCGCGC TTC GCGCGCG              ATTTGACCCGAGCCC  78 104
        leuS NONE
   Rpal_0291  312815 ..  312829 +  -4.2  -3.25539   ATGTGATCCGCGATT               CCGC CGAGCAC GCGG               TGTTGGTTCACATTC  48 35
        holA  314269 ..  314283 +  -5.6  -4.56597   CACCTTCATGCCGAG               CGCATC GCT GAGGCG               TTTTTCGAGCGCCAG  74 401
   Rpal_0300  323629 ..  323680 +  -4.3  -2.52464   GCTTGCCGATCGGCA GCGCCAGAGGGTGCCGGAATGACGC TGTG GC-TCGGGCC-GCAGCCGCTGGTGC TGGCTTCGCAGAGCC  41 4
   Rpal_0301 NONE
        coaE  324933 ..  324948 +    -6  -2.70932   GGCCGCTGCTAAAAT              GCCGCG GCGG CGCGAC               TGATTCGCGAAGCGA  46 7
   Rpal_0303  325742 ..  325800 + -12.2  -2.58544   GGGCATTGCAAAAGT CGCGAGCGTGAGCAGCGACCGGATCAGC TCG GCTGACCCTGCTGCTGGGCGCGTTCGAG GTTCTGGCGATACAG  65 82
   Rpal_0305 NONE
   Rpal_0306 NONE
   Rpal_0307  329482 ..  329511 +  -5.5  -3.56092   TTAGTTCGCAAAGCA       CGGGGTGTTCATC GGCC GACGCGCCCCCCG        TTTCCAACGTCATCA  57 37
        hisB NONE
   Rpal_0312 NONE
        hisH NONE
   Rpal_0314 NONE
   Rpal_0315 NONE
        hisE NONE
   Rpal_0317  337270 ..  337301 +  -5.9  -4.36914   GCTTGACCCGCGGAT     C-CATCG-CGTGCGC AAGC GCGCGTGACGATGTG      TTTTCTCGAAGACGA  71 71
   Rpal_0327  348262 ..  348281 +  -5.6  -3.57561   ATGGCCAGCTCTGTC            ACGTCGCA ATCC TGCGGCGC             TTTCGAGAGTTGAGC  57 432
   Rpal_0329  349047 ..  349060 +  -9.5  -2.72991   TGTGCCGACATTCCG               CGCCC GGGC GGGCG                TGGTTGGAAATCTCA  55 437
        hrcA  352406 ..  352428 +  -6.3  -3.55801   ACACGGCGCGGATCG           TCAGCCG GATGCTCGG CGGCTGA           TTTCCGAAACTTGAT  59 3
   Rpal_0334  353217 ..  353237 +   -14  -3.87149   TTTGAGAGAGAAAAA            CGACGCGC CGCTC GCGCGTCG            TTTGCGTTTGGTCAG  86 100
        dnaK  356457 ..  356497 + -17.6   -3.7511   GCGACGAGGACCATG  CCCCCATCTGACGAACGC CATCC GCGGTCATCAGGTGGGGG  TTGTCTTGTAAGGCG 100 62
   Rpal_0337  357843 ..  357856 +  -3.7  -3.18912   AAATTTGACACTGGG               CCGCG TTTC CCCGG                TTGGTAGCTGAATGG  47 94
   Rpal_0338 NONE
   Rpal_0339 NONE
   Rpal_0340 NONE
   Rpal_0341  360230 ..  360245 +  -8.2  -2.59431   GCGAGCCAAACGCCA              CCGGGC CGCC GCTCGG               TAAGTTGTCGGACAC  53 44
   Rpal_0342  361280 ..  361308 + -10.1  -3.28712   GGGTCGGGGCGAGGT        CGGAGAGCTGGCC GTC GGCCAGCGGGCCG        TTGTCGCCGACAAGC  63 182
   Rpal_0346  365470 ..  365484 + -11.4  -3.04501   GGCCGAAATCCCATT               GCTCGG CGA CCGAGC               TGTTCAACAGTTCGT  65 416
   Rpal_0352 NONE
   Rpal_0353 NONE
   Rpal_0354  375391 ..  375410 +  -3.4  -4.05446   TTCACCATCGCGCGG            GCGCCGAC GTAG GTCAGCTC             TTTCTGATTGCCGCG  59 513
   Rpal_0356  378412 ..  378458 + -10.2   -3.9461   CGAAATAGCGGGGAG TAGCCGCCGGCGCGGCGGCCTGG CCAA CC-GGCC-TTGCGGCGG-GGCTA TTCTTCTTCGCCGAA  76 33
   Rpal_0362  383500 ..  383518 +  -4.4  -3.10959   GCCACTATTCAGTCG             CCCCACTG GAT CAGGGCGG             TATATATTGACGTTA  45 110
   Rpal_0363  385246 ..  385266 + -15.4   -5.2015   CGATTGAAATACGAA            GGGCGGCC CGCAA GGCCGCCC            TTTTTCTATTCTTCC 100 54
   Rpal_0364  388546 ..  388566 + -15.4  -5.07486   CGATTGAAATACAAA            GGGCGGCC CGCAA GGCCGCCC            TTTTTCTTGGCCGTG 100 221
   Rpal_0366  390628 ..  390678 +  -8.1  -4.44667   GGCGCCGCGGTGGCG GACGCCATGCGCGGCTGAGCCGCGC GCG GCGCGTCACGACCGC-TA-GGCGGC TTTCTTCTTCGCCGC  84 8
   Rpal_0369 NONE
   Rpal_0370  394186 ..  394206 +   -14  -3.18571   CATCAGCTGTCGTTA            TGGCCGGG CTGGT CCCGGCCA            TCTGTGTTTCCAGGC  76 90
   Rpal_0373  396981 ..  396991 +  -2.4  -3.92542   GCCATCCACGGCCAC                 AGGC ACG GCCA                 TTCTTTAAGGATGGA  54 170
   Rpal_0376  401792 ..  401809 + -14.1  -3.28924   ATCGCGCCCGAGGTC             CGGGCGC GCTC GCGCCCG              TTGTCGAACAGGATC  75 90
   Rpal_0380 NONE
   Rpal_0381  405615 ..  405669 +  -5.7  -4.25681   TCAGGCCGTTTCCAC TAC-GTCGGGATTCCGGGTTCGCTTGC TAC GCAAGCGC-CCCGGAATGACCACTGGA TTTCTTCGCTTCGCT  71 127
   Rpal_0383  408149 ..  408183 +    -4  -4.07885   GATCATCGAGCCGAT     CTGAGCGGGCGCCTCG GTT CTGGTTGCTCGCGCGG     TTTTGCCGCGCCGTG  61 22
   Rpal_0384  410671 ..  410683 +  -6.2  -3.14211   CACGCGCGTCATGCG                GCCG GCTTG CGGC                TTGCTCCAACCGAAT  51 117
        glgC NONE
   Rpal_0386  413629 ..  413653 + -12.1  -2.62263   CAGCGATGGTCTTGA          TCGCCGTCGCG GCT CGTGACAGCGA          TACTGTCACGACGAT  65 93
   Rpal_0387 NONE
   Rpal_0388  415177 ..  415193 +  -6.5  -3.82218   ATGCCGAGAGGCTCG              GCGATCG CCA CGATCGA              TTTCGTCATCTGAAT  62 126
   Rpal_0391  417235 ..  417246 +  -7.2  -3.33696   GGCGGGTGGCAAAGC                CCGG AAGG CCGG                 TTAGTTCAACACGAC  58 10
   Rpal_0393  420440 ..  420485 +  -3.1  -3.59979   TGTGGAAGTGGTAAT CGTGGCCGTACATCGGCCGCAC CTT GTGCAGCC-AGCTGCGGTCGCC TTTGGCCTCGCGGCA  49 289
   Rpal_0395  423765 ..  423792 +  -7.6  -3.27774   AGTTTGCGATGGGAT        CGGCGCGGGTGGC TTA GAC-CTCGCGTCG        TTGCTACTTGGCCTC  58 9
   Rpal_0404  433329 ..  433361 + -18.6  -2.68823   TCGCCGCGCGAAGAT     GGTGGGTTACGGCGC AAGA GCGCC-TAACCCACC      CTTGTATCAGCGAGC  87 91
   Rpal_0406  436707 ..  436724 +  -7.7  -2.83164   CGGCCGCGAACCCGT             TTTGGCG GTCC CGCCGAA              TCTGGTGATCGGTCC  53 446
   Rpal_0409  439064 ..  439085 +  -7.9  -2.87132   CCGTCGTCGGGATCG           GCGACAGTC TGCC GGCCGTCGC            TGTGTCCCAGCAGGA  52 438
   Rpal_0412  444959 ..  444986 + -18.5  -2.62184   GATACTCTGACTTTC        CGATGCCCGGC CTTCGT GCCGGGCATCG         TCGTCTCAAGGCCCC  86 51
   Rpal_0413  446368 ..  446381 +  -3.7  -2.71712   AATACGCAAGCGGTC               CGGTC AGTT GTCCG                ATTTCGGCACAGCGC  42 82
   Rpal_0414  447000 ..  447030 +  -9.6  -3.08015   TGGAGCAATTGAGCT       TTTTGCGCTGGCGG ACG CCGCGAGCGCAGGC       TATTCGGGTGGTTCC  60 29
   Rpal_0415  447618 ..  447662 + -12.2  -2.56914   GGGCTAAGCGGCCGG ACGAAGC-GCCGGCG-AACAGG AGT TCTGATGCGCCGGCTGCTTCGA TGGATTCGTAACCTG  65 34
   Rpal_0416  449195 ..  449219 +  -2.8   -3.9122   GCCGGGCTCGACCCG          GCAATCCATC ATCTC GATGAAATGC          TTCTTTCGCGCGCTC  56 94
   Rpal_0427  459036 ..  459073 + -11.9   -2.5294   TGCCGTCGACGCTGA   CCTGGCGCAGCAGACCG ACGT CGGTCAGCTGGTTCAGG    GTATTGTACACGGTC  61 324
   Rpal_0429  460109 ..  460140 +  -8.1  -3.06696   AGCAGACGGCGCAGC     CGGTTGCTGGCTAGC GAGT GCTAGCC-G-AGCCG      TGTCTTCAGCCGCGA  57 12
   Rpal_0430  461463 ..  461506 +  -7.5  -3.63569   CCACGTGCTACGATC CTCATGG-T-GAGAAGGCGTC TCTT GGCGCCGTCCCGAACCATGAG TTGTTGACCGCTTCA  62 78
   Rpal_0431  462562 ..  462578 +  -5.8   -3.5456   GAAAGCGGAGATGCA             GC-CGGC AGGC GCCGTGC              TTACTTCTTCCGCTT  57 192
   Rpal_0434  467108 ..  467148 + -14.8  -2.73364   TGATGTGGTTGATCA  GTTCGACGATGCCGCTCA TTGCT TGAGCCGCGTCGTTGAGC  TGATTGGCCTGAGAG  72 390
   Rpal_0444  480495 ..  480521 +  -4.2  -2.60075   GCTGACGCCTGAGCC         GCCCGCGCGGCT GAC AGACTTGCGCGC         CTTCCTTCCGCACAA  41 29
   Rpal_0445  481833 ..  481849 +  -9.4  -3.06583   CAGTTCCGAGGCGTC              TCCGGC GAACA GCCGGA              TGTTGCGGATATTCT  57 395
   Rpal_0461  497282 ..  497305 +  -5.2  -3.85698   GGCCCTGGCAGAACG          CGCGGA-CGTC GTC GGCGGTCAGCG          TTTCTCCCGGGCGCG  60 403
   Rpal_0464  500753 ..  500776 +    -8  -2.78715   GAAATCGCTCCTCAT          GCGAAGGACG AGGC CGGCCTGCGC           TGTGCTCCCCGCGTT  52 73
   Rpal_0465  502380 ..  502401 + -12.9  -3.21218   AGCCTTGTCGATGAA           CGGCGCGCC GGGT GACGCGCCG            TTCGTCGTGGGGACT  73 45
   Rpal_0472  509634 ..  509647 +  -5.9   -4.2349   CGCTTCGAGTTGTGT               GCGCT AGAT GGCGC                TTTTGCCTGTCACCG  67 252
   Rpal_0473  512297 ..  512318 +  -2.1  -4.07568   AGCGCCATGGCGCGG           GCGACATCG AAGC CGGTGGCGA            TTTTGCCGGCGGCGC  58 471
   Rpal_0475  514770 ..  514782 +  -9.1  -4.05788   CTTAAGGCACAGCCT                TCGGC GGT GCCGA                TTTCCTTTCGCCGCG  76 36
   Rpal_0477  517619 ..  517676 +  -5.3  -3.73953   TCCTACGTTGTGATG CCGGCCGGGAGCGCCGGA-GTGGCGCCG TGC CGGCACCACATTAGGAGGTCTCGATGGG TTTGCTCGACATCCT  58 106
   Rpal_0478  518217 ..  518247 +  -2.6    -4.067   GACCGACGACGAGGC      CTCGCGCTG-GATC TGATC GGTCACGGCG-GAG      TTGTTGTTCCTTTGG  57 10
   Rpal_0479  518588 ..  518622 + -14.9  -2.72991   ATGATCCGCGCTGAG    GCTGC-CGCGGCCCGG TTCG CCGGGCCGCTCGCTGC     TGCTTGCGGATGTGA  75 27
   Rpal_0481 NONE
   Rpal_0482 NONE
   Rpal_0483  522799 ..  522844 +  -6.7  -3.76482   TACTCGTCAGCCCCA CGTCGTCATTCCGGG-GCGCGC GTA GCGCGAACCCGGAATCTCGAAA TTGTTGCTACTGTCC  62 50
   Rpal_0487 NONE
   Rpal_0488  528580 ..  528600 + -19.7  -3.37493   CGCGCCCACGAAAAA            GGCCCGGCG AAT CGCCGGGCC            TTGATGTCTTCGAAC  95 81
        rpmB  535808 ..  535831 + -19.6   -4.4767   TGATTGAGATTTCGG          CGGCCGGGTC GTTC GACCCGGCCG           TTTTGTCGTGCGTGC 100 63
   Rpal_0495  539642 ..  539652 +  -4.6   -2.8474   GCATCAGAGCAGCGT                 CGGC AAT GTCG                 TAGTTCTCAGTGCGG  44 342
   Rpal_0500  545110 ..  545123 +  -5.9  -4.10007   TTCGAGATCCTCGGG               GCTGC GGGC GCGGC                TTTTGGCGCCGTTCT  66 405
   Rpal_0502  546172 ..  546193 + -10.1  -3.73402   ACCACCACGTCGTGC           TCGTCGGAG ATGT CGCCGACGA            TTTCCTCGAGGATGT  70 368
   Rpal_0506 NONE
   Rpal_0507  550619 ..  550637 + -10.2  -3.65902   CCGTAGAGCGCCAGA             TGGCCGGC GCG GGCGGCCA             TTTCGGTGAGATGGC  70 309
   Rpal_0509  552234 ..  552250 +  -9.4  -3.21806   CGTTCGGCCGCAGTT              TCGCCG CGCCC CGGCGA              TTCAATGTTCCTTGA  61 116
   Rpal_0510  554140 ..  554160 +   -14  -3.55973   CTCCAGACAGCAAAA            TGCCCGGC GCGAG GCCGGGCA            TTGCTTATTCGCTTG  81 214
   Rpal_0512  558354 ..  558374 +   -14  -4.93365   AGTTGATTGTCGAAA            TGGCCGGG CTCGT CCCGGCCA            TTTTTCGTTGTCGGC 100 53
   Rpal_0514  562605 ..  562644 + -12.1  -2.71712   GAGGCGCGCTCCGCG  CGCGATG-GATGCGCGGG GCAAG CCCGCGCATGACGCCGCG  ATTTGAGGCGGCGCC  66 104
   Rpal_0518  566599 ..  566611 +  -6.2  -3.61764   GCGGCCATTGCCAAG                CCGC CTGAC GCGG                TTTACGCCTTGATCC  57 18
   Rpal_0519 NONE
        ispG  569122 ..  569153 +  -6.5  -4.58663   GCCGTTCTCTCCACT      CGT-CTTGCCCGGG CTTGA CCCGGGCATCCACG      TTTTTGAGCGCTCGT  78 144
   Rpal_0522 NONE
   Rpal_0523  573581 ..  573610 + -12.8  -3.06183   GGTGGCGAGCGCCAG       CTCGGCGGCGCC GCGATG GGCGGTGCCGAG        TTCGGTGACGATCGC  67 354
        mtgA  575738 ..  575748 +  -2.4  -3.23274   CGACCGCCCTAGCAT                 TCCG ATC CGGC                 TTCCGTTATAAGCCC  43 68
        rpmF  576279 ..  576295 +  -4.4  -3.58522   GAACCACAGGCTTCG              CCGATG TCGAT TATCGG              TTTCCCGCTGCTGCT  53 265
   Rpal_0528  577373 ..  577383 +  -5.4  -4.70921   GTCCCGGAATCCGAA                 TTGG TTT CCAA                 TTTCTTTATATTATC  78 493
   Rpal_0530  579711 ..  579735 +  -8.6  -3.98627   TTGCCGAAGGAAGGT         GGTCG-GCAGA AGGT TCTGCCCGGCC          TTGTTCTCTTGCTCG  70 519
   Rpal_0532  581468 ..  581488 + -18.3  -4.92777   GAACGATTGTTCAAA            CGCCCGGCA GAT TGCCGGGCG            TTTTTGCTTGATGTT 100 95
   Rpal_0533  582332 ..  582351 +  -5.6  -3.14132   ATCGTCTGCGATCCT            CGCACAGC GTGT GTTGCGCG             TTGATGCGAGGCGCG  51 51
   Rpal_0534  583485 ..  583519 +    -2  -3.90112   GGCGGTGTAGTCGCC    GCGCGACGGCCGC AAACCGAACC GC-GCCGCCGAGC     TTTCGTTGAGAGCGA  56 261
   Rpal_0537  587772 ..  587800 +    -3  -3.63515   CGGCCTGCACCACGG       CGTCGTCGCGCCA GGCT TCGCGCG-CGGCC        TTGTTGGCCATCCAG  53 173
   Rpal_0540  592605 ..  592650 +  -7.4  -3.78329   CGCCAGCGGCCTATA GCCGAGACTCCAGCCGGCGA ATGCAG TCGGCGTCTCCAGTCGCGGC TTTCAATTGCTGGCC  65 25
   Rpal_0542 NONE
   Rpal_0544  596503 ..  596513 +  -4.6  -2.70932   GCGAGTGCAACAAGC                 GCCT AAA GGGC                 TGATTAACCCCGAAC  44 12
   Rpal_0545 NONE
   Rpal_0546  597811 ..  597826 +    -6  -3.17075   AGTGTGATTTGCCGC              CGCCGC AACC GCCGCG               TTACGTTCGCGCGCA  51 64
   Rpal_0547 NONE
   Rpal_0549  600771 ..  600785 +  -8.5  -3.01712   ACCAGGGCTGCAGCA               GCCGG GCGAA CCGGC               TCTTGAACCGCAGCG  55 48
   Rpal_0552  602520 ..  602577 + -17.2   -4.7078   CCGATCGAACGCGAG TCCAGC--ATGGTCGTGGGGCCTGCCGGC GAT GCCGGCGGGCCCT-CGACTGTGAGTTGGA TTTTTGCGTGGTTCG 100 62
   Rpal_0554 NONE
   Rpal_0555 NONE
   Rpal_0556  606794 ..  606820 + -10.1  -3.01924   ATCGCATGGTCGCCC        GGTCGCGGCTGC AATT GC-GCCACGACC         TGTTCGGACCGCGTG  60 520
   Rpal_0559  609146 ..  609156 +  -6.8  -3.32844   CGTCGAGATAATCGC                 GCAG CGG CTGC                 TTGTCGAATGACGGC  54 246
   Rpal_0565  615939 ..  615961 +  -6.8  -3.96705   CGCTGCCGGGCAAGC           CGACCGCGCG GGT CGCGTGAACG           TTTAGATTTTGTAAA  67 6
   Rpal_0567  617095 ..  617122 + -14.1  -4.11692   ATTCGTCCACGATGA        TGGCCCGCCGC CCCCAA GCTGCGGGCCA         TTTTGCGGGTGGCTG  93 55
   Rpal_0568  618451 ..  618464 +  -5.9  -2.77899   GACTGCCCTCAGTAT               CGGCG CTGT CGTCG                TCATTGGTGCAACAG  46 61
   Rpal_0569  618999 ..  619030 +   -26  -4.32951   GCTGATCAATCCAAG      GATCGGGCCGCGTC GAGG GACGCGGCCCGATC       TTTATTGCTTAGGGT 100 62
   Rpal_0573  622816 ..  622872 +  -6.8  -3.53012   CCGGGGCGCCGCGTC GC-AGCGAACCCTGAATCTCGATG GATTCGTCGCG TGTCG-GATTCCGGGTTCGCTCGC TTTGCGAGCGCCCCG  57 56
   Rpal_0576 NONE
   Rpal_0577  626632 ..  626654 + -13.4   -2.9838   CGAGTAGGATGATTC           CGGACAGGCC TGT GGACTGTCCG           TGCTTACTTTTTACG  75 34
   Rpal_0578  628344 ..  628354 +    -4  -4.56597   GCCCTGTATATTGGG                 CAAA TGA TTTG                 TTTTTGCGCCGAGCG  72 279
   Rpal_0579  629165 ..  629185 +  -5.3  -3.33815   CGACCTGCACCGCTA            CGGGATCAG CGA CTGAACGCG            TTGATTGCGGGCGCT  50 10
   Rpal_0581  632188 ..  632198 +  -4.6   -3.4914   CTGCTGCACCGGCAA                 CCGG GTA TCGG                 TGTTTAGTGATAGTT  53 107
   Rpal_0585  634973 ..  635004 + -11.6  -3.78067   GACGTCAGGATAGGA      CTGT-GGTAGCGCCG CTT CGGCGCTTCCTATAG      TTTGCCTTCCATCTT  78 48
   Rpal_0586  637836 ..  637846 +  -2.4  -3.29511   TTTGGCCCGGTGCGG                 CGCC TGA GGGG                 TTATGCACACGTGGC  45 75
   Rpal_0587 NONE
   Rpal_0592  646523 ..  646555 + -15.7  -2.87132   AAGGTCAGATCAAAA     CGTCGATGCCCGGC GCAAAG GCCGGGCATC-ACG      TGTATCAGGCGGACC  79 119
        argJ NONE
   Rpal_0596 NONE
   Rpal_0597  653478 ..  653494 +  -6.5  -3.38522   TGGCGACTTGGTGGG              CGGCG AAGAACA CGCCG              TATTTGCCGTCGGTG  55 239
   Rpal_0601 NONE
   Rpal_0602 NONE
   Rpal_0603 NONE
   Rpal_0604  658473 ..  658489 +  -3.6   -4.5442   GACCTCTTGGCTGTA              GCGAGC CTCAT GCTCTC              TTTTGTCATTCCGGG  69 39
   Rpal_0605  659176 ..  659191 +  -2.5  -2.71364   AATGCCGATAACCTC              GCGCGG CGCCA CCG-GC              TGCTTGAACGAGTAG  38 83
   Rpal_0608  662482 ..  662494 +  -6.9  -4.72029   GCGCTGACAGGACGG                CTGGC AAG GCCGG                TTTTGTTGCGTTGCG  81 153
   Rpal_0609  664962 ..  664980 + -11.6   -4.0162   TCGCTTTGTAGCGAC             GCGGCTGC CCC GCCGCCGC             TTTGTCGTCTCACGC  83 30
        prfA  666091 ..  666114 +    -3  -3.05596   GCCGAGCAGGGCAAC          GCGGCGTGAGC GAC GCTC-CGACGA          TTGCATCCGCGCGTC  43 17
   Rpal_0611  667251 ..  667278 +   -12  -3.53224   GGCTCGATGAATTGA        TCCGGCCGGCGGT GTA ACGGCCG-CCGGA        TTTGGAGAACGCGTC  74 311
   Rpal_0612  668154 ..  668175 + -15.1  -4.13654   GATCAAATCAGACGA           GGCCGCGCC GGTT GGTGCGGCC            TTTGTCGTTTCGGCA 100 67
   Rpal_0614 NONE
   Rpal_0615  670430 ..  670482 +   -10  -2.71712   CCCACCGCAACAAAC CACCGAG-C-AGCATGATGGGTCAGG GCG CTTAACCCATCATGCGAGTCTGGGTG ATTTACAGCGCGCCG  60 91
   Rpal_0619 NONE
   Rpal_0620  675440 ..  675458 + -13.8  -2.90065   TGGCCTCGGCCTGCC             GCCCGGGC TCG GCCTGGGC             TAGTCTTTCTGGCCT  74 4
        recR NONE
   Rpal_0622  676833 ..  676862 +  -3.5  -2.57132   GGCGAGGGCGGTGAG       CAGC-GCGTATTGC GTC GCAGTGTGCAGCGG       GTTCTGGCACAGCGC  40 249
         def NONE
         fmt  680978 ..  681024 + -13.6  -3.09516   CGCGAAGGGTGTGCG GGTGGGTTAGGGCTGAGGCGCA GCC TGAGCCTGAGCGCCACCCCACC TTCGGTCGTCACCAC  75 16
        truA  681922 ..  681965 +   -16  -2.53119   ACTGAGCGGCGCGGC CGTCATTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAATCCCG ATGTTGTCGCGAATT  79 36
   Rpal_0639  693309 ..  693338 +  -7.2  -2.62184   CAGGCGGCGGTGCAA      TC-GCGCTCGCGCT GTCC AGCGC-AGCGCAGG       TCGTGTAACCCGCAA  51 397
   Rpal_0642 NONE
   Rpal_0643  695665 ..  695701 + -11.6  -4.10453   TTCCTCCCGTGACTG   ACGGCGGATGCCGGG CCTTCCAA CCC-GCATCCGCCGC    TTTTCAACCCCTTTC  83 25
   Rpal_0644 NONE
   Rpal_0645 NONE
   Rpal_0646 NONE
   Rpal_0647 NONE
   Rpal_0648 NONE
   Rpal_0649 NONE
   Rpal_0650 NONE
   Rpal_0651 NONE
   Rpal_0652  702688 ..  702698 +  -6.8  -3.21912   CAATTAGGTTCTCAA                 CTCC GGC GGAG                 TTCGTCCATTGGCAA  53 225
   Rpal_0653 NONE
   Rpal_0654 NONE
   Rpal_0655 NONE
   Rpal_0656 NONE
   Rpal_0657 NONE
   Rpal_0658 NONE
   Rpal_0659 NONE
   Rpal_0660 NONE
   Rpal_0661  706452 ..  706470 +  -2.4  -2.89881   TCAGCGGTCCCGATG            CCGT-GC GGTGCA GCTACGG             TCTCTCGCGTCGATC  40 91
   Rpal_0662 NONE
   Rpal_0663 NONE
   Rpal_0664 NONE
   Rpal_0665 NONE
   Rpal_0666 NONE
   Rpal_0667 NONE
   Rpal_0668 NONE
   Rpal_0669 NONE
   Rpal_0670 NONE
   Rpal_0671 NONE
   Rpal_0672  714559 ..  714577 +  -6.6  -3.14564   TGTCAGCGGCCCGAG             TGGCCGGG GTG CACGGCTA             TTGATGCACCCATGA  53 209
   Rpal_0673 NONE
   Rpal_0674 NONE
   Rpal_0675 NONE
   Rpal_0676 NONE
   Rpal_0677 NONE
   Rpal_0678 NONE
   Rpal_0679 NONE
   Rpal_0680 NONE
   Rpal_0681 NONE
   Rpal_0682 NONE
   Rpal_0683 NONE
   Rpal_0684 NONE
   Rpal_0685  721819 ..  721836 +  -3.3  -3.53811   CTGTGAGTTGGGGGA             TTGACGG ATGA CCGCCGA              TTTCACCCCGATCCA  51 15
   Rpal_0686 NONE
   Rpal_0687 NONE
   Rpal_0688  725606 ..  725620 +  -3.5  -3.53012   ACGGCACAAAGATCA              CCG-GC TACA GCGCGG               TTTAAAGCCGCCCCA  49 6
   Rpal_0689 NONE
   Rpal_0690  727932 ..  727957 + -16.9  -2.75064   TTGCCTGACGGCCCA         GGGTCGCTGAC GCGT GTCAGCGGCCC          TACTTACGTCAGCGC  84 33
   Rpal_0691 NONE
   Rpal_0692  730149 ..  730159 +  -3.2  -3.53012   GACGGCTCGGAGAGA                 CGAG CGA CTTG                 TTTCGGAGGCAGCGG  49 162
   Rpal_0693 NONE
   Rpal_0694  730903 ..  730929 +  -5.1  -3.05963   GGGGCGTGCTGAGGA        GCGACCGATGAG TAAC CTCGACG-TCGC         TCTTCGGCTCCGGCT  47 15
   Rpal_0695  733179 ..  733193 +  -4.2  -2.82516   GCAATAGTTCCTCGT               CCCTGT TCG ACACGG               TGTGATCATGAGCGC  42 6
   Rpal_0696 NONE
   Rpal_0697 NONE
   Rpal_0698 NONE
   Rpal_0699 NONE
   Rpal_0700  735693 ..  735709 +  -5.7  -3.55071   CGGGGTCCGGAATTA              CCCGGCC GCG GGTCGAG              TTTGGCGACCTGTCC  57 58
   Rpal_0701  736736 ..  736746 +  -8.2  -3.17194   CCATGGACAATCCGC                 GCCG GCC CGGC                 TTGGATTGGGGCCAT  58 65
   Rpal_0702  737117 ..  737143 +  -2.9  -3.53444   TCCATCAGTTCAAAC        GGGTGCTGCGCG GTTC CGCG-GGCATGC         TTTCGCAGGCGATGG  49 113
   Rpal_0706  742747 ..  742763 + -11.5  -2.61681   CGTCGTCAGGTGTCA              TCGCCGC GAT GCGGCGG              GTTATGCCGTTCAGC  62 122
   Rpal_0707  743626 ..  743656 + -14.7  -2.56271   CGGCTGATGACGTCT      GA-TCCGGGCCGGC ACCG GCCGGCCCGGCCTC       CTCTTGTGATCGGAC  74 34
   Rpal_0708 NONE
   Rpal_0709  745762 ..  745782 +  -9.7  -3.15861   CGAGGCCTGGGAGTA            CGTCGCG GTGACGA CGCGACG            TTGATGACGATGATC  61 1
   Rpal_0710  746214 ..  746235 + -12.3  -3.57144   GCCAGCGATTCTGGC           GCGACGCGT TCCA ACGCGTTGC            TTTCCGGATCAGCCA  75 58
   Rpal_0711 NONE
        flgE NONE
   Rpal_0713 NONE
   Rpal_0714 NONE
   Rpal_0715 NONE
        flgL  751999 ..  752011 + -10.5  -3.28712   CTAGCGGTGGGAGAA                GCGCG GTG CGCGC                TTCTCCAGGAAGGCC  66 60
   Rpal_0722 NONE
   Rpal_0723  759076 ..  759091 +  -4.8  -2.60555   TGTGCCTTTGCCAAA              TTTGAT CCGC ATCAAA               TGAATTATCGCATTC  43 76
   Rpal_0724 NONE
   Rpal_0725 NONE
   Rpal_0726  762992 ..  763018 +   -10  -3.09635   CTCCGAATTCGCCCG         CCGCGCCGTCGC GGC GTGACGACGGGG         TTGGGTAGTGCCGCT  62 7
   Rpal_0727 NONE
   Rpal_0728 NONE
   Rpal_0729  765973 ..  766003 +  -6.7  -3.14522   AATGCCGTGCCGAGG      CGCCGTTCGGACCG CGTT CGG-CCTTGCGGCG       TTCGGTATCCATTAC  52 109
   Rpal_0737 NONE
   Rpal_0738  776446 ..  776463 +  -2.5  -3.10112   GGCGGTGGCGGAGAG             GGCAGCC TCAT GACCGCC              TTGAATGCGTTGAAT  41 13
   Rpal_0739  777634 ..  777646 +  -6.2  -3.40403   CAGCCCCAATTCGCC                GGCG ATCAG CGCC                TTGTCGTAGGGCAGC  55 221
   Rpal_0741 NONE
   Rpal_0742 NONE
   Rpal_0743  782247 ..  782281 +  -9.3  -3.18264   TGCGAGCGTAGCGAA    GCAATCCAG-GACCGC GCGC GAGGCCGCTGGATTGC     TTCATCGCTGCGCCC  61 100
   Rpal_0744  783842 ..  783868 + -16.5  -3.60296   TAGACCTATGTCTAA         GGCCGCCCCGC CGAAA GCGGGGCAGCC         TTTCGCATGCCGGTC  91 73
   Rpal_0745  787181 ..  787213 + -13.4  -3.57144   CTGCGGCTTCGGTCC     GTCGCCGCGCACCGG GCGG CGGGTGC-CGGCGGC      TTTGCCGGTCCCAGG  77 100
   Rpal_0748 NONE
   Rpal_0749 NONE
   Rpal_0750  794939 ..  794951 +  -5.5  -4.27316   TCGGCGATGTCGTCG                GCGAG CTT CTTGC                TTTTGGCTTCGGCGA  69 100
   Rpal_0752  796327 ..  796338 +  -4.4  -3.57144   ACTGGCCGGCTCGCA                TCGT CAAG ACGA                 TTTCGCCCTACGGCG  53 283
   Rpal_0763  805402 ..  805413 +  -2.2  -3.73775   CTTCCGCCCGATGAT                C-GCG AAG CGCAG                TTTGCTGGAGATCCA  51 376
   Rpal_0769 NONE
   Rpal_0770  811048 ..  811061 +  -4.5  -3.28261   AAACTGCCGCACCCG               GCTGGC GTT GCC-GC               TTGATCTGAGGTTAT  48 8
   Rpal_0771  812268 ..  812288 +  -4.6  -4.04206   CGATGGGCGCTGAAA           CCGC-CGCG ACCG CGCGCGCGA            TTTCTGTAGCGCTGC  62 501
   Rpal_0773  813229 ..  813245 +  -2.2  -4.03234   GGGGTCGAAACGCCA              GCGG CAGCATGAC CCGC              TTTATCTAAGGCGGA  57 46
   Rpal_0776  815959 ..  815982 +  -6.6  -4.00042   TGGCTTCGATTTGAT          CCGACGCG TTGCAGGC CGCGCCGG           TTGTTTGCTAGGCGC  67 354
   Rpal_0778  816293 ..  816312 +  -4.3  -3.53012   GTCTGCCGGAAGGAA            CGATCCTG CGCTT CAGG-TCG            TTTGCACGCCGACGA  51 72
   Rpal_0779  816865 ..  816885 +    -6  -3.53811   ACCAAGCCCGAGTGA            TCCGGCGG ATTTG TCGCCGGC            TTTCGACGGCCTCCC  57 26
   Rpal_0780  817510 ..  817534 +  -4.2  -3.56643   ACAACGATCACTGGA          CTGTTCGGCC GCTGA GTCTGAGCAG          TTTCCAGGATCTCAA  53 11
   Rpal_0781  817995 ..  818012 +  -3.3  -3.41051   GATTTCGTGCAAATT             GCG-GCTG TCG CCGCGCGC             TTGTCATGACGATCG  49 193
   Rpal_0784  820648 ..  820669 +  -2.8  -2.62616   GTCTCCCGATGATGG           GCGGGCGC CGGCAT GAGCGCGC            TGATCTCCACCCTGG  39 10
   Rpal_0785 NONE
   Rpal_0786  822230 ..  822272 +  -8.5  -2.55544   TCATTGCGAGCGAAG CGAAGCAATCCAGGACT TTCGGGCTC GGAGCTGGATTGCTTCG TCGCTTCGCTCCTCG  53 57
        cobN NONE
   Rpal_0788  826725 ..  826774 +  -2.8  -2.72144   GCGGCAGAAGCCCGA GTATGTTATTCCGGG-GCGGGAGC GCCA GCTCGCGAACCCGGAATCTCG-AC ATTTAGAGCACCTCG  40 45
   Rpal_0789  828723 ..  828734 +  -2.2  -4.42386   CGATCATCGAATCGG                CGGT GTTG ATCG                 TTTTGTAGATCAAAA  65 411
   Rpal_0792  831166 ..  831199 +  -3.7  -3.21924   GCGGCACCTTCAGGT     TCCGGACCACGGC AGGATCAC GCCGCTGTCCTGA      TATTGTGCCCGATAG  47 43
   Rpal_0798  837260 ..  837279 +  -4.2  -4.73682   CTGCTGCAAAACGTA            GCAGAGAG AGCG CTCGTTGC             TTTTCTCTTCTCGGC  75 492
   Rpal_0799  838760 ..  838772 +  -4.7  -2.75844   CACGCAATGAGAAAC                CGGCC ATG GCCCG                ATTTGGACTGAGAGC  44 31
   Rpal_0800 NONE
   Rpal_0801  840433 ..  840466 + -14.6  -4.02817   CTCTCCCCAGACTGG     CCCCGCGCTCCCGAT ACGCA ACCGGGAG-GCGGGG     TTATTGTTGTCCGGC  93 413
   Rpal_0802  841577 ..  841624 +    -9  -2.55551   TCCGTCCGCAAACAA CCTCGGGATTCCGGGTTCGCCGT TGC GCGGCGC-CCCGGAATAACGGTG TCAATTCCCCTTGTC  56 133
   Rpal_0803  842192 ..  842215 +  -3.1  -3.14211   TGCTCTGTTGGCGGA          GGCGCAGCGA TGAGT TTGC-GCGTC          TTCATCCCGCGCGAT  44 13
   Rpal_0804 NONE
   Rpal_0805 NONE
   Rpal_0806 NONE
   Rpal_0807 NONE
   Rpal_0808  849379 ..  849404 + -21.9  -2.63079   TCTCGACCGATGTTG         CGGGACGGCGG CGTG CCGCCGTCCCG          TCGATTCTCTGACGA 100 41
   Rpal_0809  850913 ..  850946 + -12.3  -2.79302   TCTCCGCCTGCTTCA     TTCCGGAGCGCTCGC GCAA GCGGCCGCCCCGGGA      TGTGATCGCGATGAT  66 59
   Rpal_0810  851656 ..  851674 +  -5.8  -3.78934   CGGAATGCAACAAAG             GCTCGCCG TCG CGGCGCGG             TTGTTCTACACAGCC  60 61
   Rpal_0811 NONE
   Rpal_0812 NONE
   Rpal_0813  855166 ..  855195 +  -4.2  -3.54459   CACAGCGTGCTGGTC       TTGCGCCGACCGG CTGCA CAGG-CGGCTCAA       TTTCGCGGCAGTTAG  53 52
   Rpal_0814  857039 ..  857050 +  -7.2  -3.37796   TTGCCGGCGTAGAGA                CGGC ACCA GCCG                 TTCTCGCTGATCGGG  58 222
   Rpal_0823 NONE
   Rpal_0824  870454 ..  870483 +  -8.5  -3.67296   TCGGGGTAGCTGATC       TCGACG-TCGGCGC CGA GCGCCGAGCGGGGA       TTTCGGTCGATCATC  65 105
   Rpal_0833  881075 ..  881100 + -16.9  -5.24129   CAGCGATCACAAAGC         GGGCTGCGTAC GAAA GTGCGCAGCCC          TTTTTTGTCGCCCGC 100 54
   Rpal_0834  881997 ..  882049 +   -17  -3.14344   CAAGCCGGCATGAGC TACTTTGGCGATCGTCCCGGCGAG GCTCG CAAGCCGGGACGATCGCAAGGGTG TTAGTCCGGGAAGTC  89 28
   Rpal_0837  886029 ..  886041 +  -4.1  -3.09327   CATTAACGCGGTAGC                CCTAG TCC TTAGG                TCTTAAATAGACTGA  45 82
   Rpal_0838  887281 ..  887297 +  -5.2  -4.08692   TTACTTATGATCACT              TCAGAT CAAAA ATCTGA              TTTTACGGAAGGTTC  63 287
   Rpal_0843  892578 ..  892596 +  -7.4  -4.03234   CTTTCTGCCACGGCG             TCGCCC CACGGCT GGGCGA             TTTCTGTCGCGCCGC  70 77
   Rpal_0847  898309 ..  898320 +  -7.2  -3.66178   GTGGTGGGCGTTTTG                GCCC GCCT GGGC                 TTTCGCCTTCGCCAG  61 74
   Rpal_0852  903458 ..  903502 + -16.6  -2.55544   TCATTGCGAGCGAAG CGAAACAATCCAG-AGCGCCG AGCA CGGGGCTTCTGGATTGCTTCG TCGCTTCGCTCCTCG  80 63
   Rpal_0855  907498 ..  907517 + -16.4  -5.65496   GATGGATGTTTCGAA            GGCCCCGG TTCG CCGGGGCC             TTTTTGTTTTTGCTG 100 53
   Rpal_0856  909586 ..  909597 +  -2.2  -4.32034   AGATGCACCGGGGCC                GTGC CGGC GTAC                 TTTTGGTAGTGCTCG  65 473
   Rpal_0861  915208 ..  915234 + -23.8  -4.05446   TTCTGAGAACGAAAA         GGCCTGACGCGG TGC CCGCGTCAGGCC         TTTGTCGTTGACAGC 100 62
   Rpal_0864  917393 ..  917422 +  -2.7  -3.07443   CGACGGCAGCCACGT       CGTGCCGGAGCTCG CAT CGTGATTCG-CGCG       TTCGATGCCGTCTCG  41 4
   Rpal_0865  918527 ..  918576 +  -9.9  -3.34013   CGTTATTCTCACCAC CGACGTCATTCCGGG-GCGCTCGC AAA GCGAGCGAACCCGGAATCCAGTAG TTACTTGGGCACATG  66 47
   Rpal_0872  926078 ..  926119 + -12.9  -3.25823   CAATGACGAGGATGC CGCAAACAAAACCCCGGCC GCTA GGCCGGGGCTCTGTGTCCG  TTGCTGTGAGGCAAA  74 118
   Rpal_0874  929113 ..  929145 + -11.2  -4.08216   ATCCCGACACGTGGT      TGCGTATGGCCGGG CTCGT CCCGGCCATTCACG      TTTTAGGGCGGCTCC  82 88
   Rpal_0875  931994 ..  932008 +  -5.6  -2.78712   AGGGTCGGGGTAGGG               GGTGCC ACA GGCACG               TCATTCAATTGAGAA  46 67
   Rpal_0876  932773 ..  932806 + -16.1  -2.94747   CCTTTCAACGAGTCA     TTCCGGG-GCGCTCAC GCA GTGAGCGAACCCGGAA     TCTCTGGTGCGCTAG  83 59
   Rpal_0878  934770 ..  934812 +  -2.5  -2.55074   CCGGCAGGCTGAGCT GCTGCGGC-GGGGCGTTCCG CTAC CGGAACGAAGCGGCTGCGGG TACGTTGGCGTTCAC  38 29
   Rpal_0879  936512 ..  936553 +  -8.7  -2.80816   CGAACGAGGTGTCGG TCTCGGTC-AGCAGCTCGCC GCC GGAGAACAGCTTGATCGAGA TGTCGTAGCTACCGA  54 339
   Rpal_0884  943227 ..  943241 +  -3.5  -2.55668   GCAGCAATAAGCGCG               TCGGC GACTG GTCGA               ATTCATCTCGCCGTC  39 31
   Rpal_0885  945097 ..  945108 +  -5.8  -3.72576   GAACTGCCGGCGGAA                GCGT TCTG ACGC                 TTTCGTCAAACCAAC  60 17
   Rpal_0886 NONE
   Rpal_0887  949128 ..  949152 + -17.2  -4.32857   CAGTACAAATAACAA          GGGCCGGATC ATCGC GATCCGGCCC          TTTGTCTTTCCCCGC 100 328
   Rpal_0889  950564 ..  950581 +  -2.5  -3.63569   TTCCACCACCTCGCG             TCGCCCG ATCC CGCGCGC              TTCTTCCGGACTTCC  49 85
   Rpal_0890  951986 ..  952003 +    -4  -3.14931   GCTGGCGGACCAAGA             CCGCGC TGGCCC GCGCCG              TTCATCCGCCATACA  47 43
   Rpal_0891  953062 ..  953086 +  -9.2  -3.14132   GCGGCCGACGCCGTC          CGGCGTTACC TTGGC GGCGACGCCG          TTGATGAACACCCGG  59 422
   Rpal_0894  955215 ..  955245 +  -6.9  -3.01712   GGCGGATCGTGAACG      GCGGC-TCATCACG GCTT CGTAATGAAGCTGC       TGTTCGACCAGAACC  51 4
   Rpal_0895  955604 ..  955617 +  -2.4  -3.50393   GAAGTCGGTGCAGGG               TGTC TCGCTT GACA                TTATATCGCGTGCGA  47 64
   Rpal_0896  956165 ..  956193 +  -3.9  -3.16881   TTTCCTTCTCTAATA       TATCGTTCG-CG ATATAG CGTCGCACGATA        TTAATCCGCTGCCTC  47 72
   Rpal_0897  956781 ..  956819 + -10.3  -2.79273   CCACGGAAGCTCTGC  GATACTG-GGTCCCCCGC ATGC GCGGGGGATGACAGCATC   ATTCTGTTCACGGGC  60 148
   Rpal_0899  958731 ..  958750 +    -2  -3.08046   TCGCAAGACGTCGAA            CGGAGACC GCAA GGTCTGAG             GTTTTCAAGTCAGGA  41 51
   Rpal_0900  960392 ..  960426 +    -2  -2.90075   GGTGCTGCCGCAGGT    GCG-CTGAGGCCGGT GTTGGA ACCTGCATCCGCCGC     TGTCGTTGCGGCAGC  40 19
   Rpal_0901 NONE
   Rpal_0902 NONE
   Rpal_0903 NONE
   Rpal_0904  963265 ..  963299 +  -7.3  -3.66654   AGCGAAGCGACGAAG    CAATCCAGGAGTCC CATGCACC GGGCTC-TGGATTG     TTTCGCCTTCGGCTC  62 135
   Rpal_0905 NONE
   Rpal_0906  964625 ..  964646 +  -5.7  -3.53343   TCGATCAATATCAAA           GGCTTGGGC GTTC GGCCGGGCC            TTTGGAGGCACCCTT  55 137
   Rpal_0907 NONE
   Rpal_0908  967415 ..  967434 +    -2  -3.83998   GACTCTGCGGGTCGG            GAGTGCCG TCCA TGGCGCTG             TTTCGTATGCCATCC  54 76
   Rpal_0909  968035 ..  968056 +  -2.9  -3.59402   CGGTCCGGGAGCACC           TGCCGCC TTTGGTTC GCCGGCA            TTGCTTTGCTATAAC  51 47
   Rpal_0910  968846 ..  968871 + -21.9  -4.13995   TAAACAAAACAAAAA         GGCCGGCGCGA TCGC TCGCGCCGGCC          TTTGATTTGTAACAG 100 107
   Rpal_0916  972412 ..  972431 +  -7.8  -3.14132   CGGCCGACGAACTGA            GGCCCCAT ATAG GTGGGGTC             TTGATCGGAAAGGCG  56 26
   Rpal_0917  973035 ..  973060 +    -2  -3.10409   CTTCAGCGGCGACAA        GATCT-G-ATCG GCCG CGATGCGAGATC         TTCGATGAGTTCATC  41 19
   Rpal_0918  973669 ..  973692 + -19.6  -3.48269   TCTCCTAAAACAAAG          CGGCCGCGGA TTGC TCCGCGGCCG           TTGCTATTTGGTCGG 100 156
   Rpal_0920  976472 ..  976506 + -20.2  -3.19157   TGCGAGCAAAGCGAA     GCAATCCAGAGGCC ATGCGTG GGCCTCTGGATTGC     TTCGTCGACTTCGTC  95 83
   Rpal_0926 NONE
   Rpal_0927 NONE
   Rpal_0928  989190 ..  989230 +  -3.8  -4.11216   TGACCCGAGCCTGGA CCGCCGCGGCGGTCGCCCGG AAT CCG-GCGGTC-CCGCCACGA TTTTCGGCCTCAGCC  63 58
   Rpal_0929 NONE
   Rpal_0930  991398 ..  991409 +  -3.6  -3.86822   TACGAAAGCAGGCGG                CTGC CGAT GCGG                 TTTCTCACCACCTTC  56 54
   Rpal_0931  992134 ..  992150 +  -3.6  -2.71791   AAGATTGATTCACCT              TGTCGC TAATT GCGACC              CTTTCGGAACCCGGT  40 33
   Rpal_0932  992620 ..  992645 + -13.3  -5.18726   GGAAGATCGACTTTG         GCCGGGCTGCGT TCA GCG-AGCCCGGC         TTTTTCTTGTGCCGC 100 60
   Rpal_0940 NONE
   Rpal_0941 1001569 .. 1001613 +   -10  -3.06183   GCGAGGAGCGCAGCG ACGGAGCAATCCACTG-CCCC GCGT GGGGCCTCTGGATTGCTTCGC TTCGCTCGCAATGAC  62 94
   Rpal_0942 1002826 .. 1002842 +  -7.9  -4.07568   CCAGCAGCCTGCAAA              TCTGCGC TTT GCGCGGG              TTTTGGCAAAACCCC  70 41
        hemH NONE
   Rpal_0944 NONE
   Rpal_0945 1005967 .. 1005999 + -10.6  -3.53012   ATAGTCGCCCCCGGC      GATCTCGATGCGCT CGACC GGCGGATCGAGGTC      TTTGCCGCCCGGCGC  70 351
   Rpal_0948 1009952 .. 1010010 +  -3.9  -2.83403   TTTGCCGCGTCGGGC CGATCGGCGAGTGTCCGCCCCGAAC GACGGGGATGG GCTCGGGGCGGGGA-T-GACGATCG GTTTGCTGCGCGGGG  44 89
   Rpal_0949 1011114 .. 1011127 +  -9.5  -3.25823   CGATGACGATCATCG               CGGCG AACA CGCCG                TTGCTGTCGAACGAG  61 122
   Rpal_0954 1016401 .. 1016413 + -10.5  -3.30124   GTTCGAGGGCGCCGT                GCCGG GCG CCGGC                TTCTCCACCATGCCG  63 341
   Rpal_0957 1018809 .. 1018832 +   -21  -3.36749   ACCCCTAGCCAAGCA          GGCGCCCCGG GCAA CCGGGGCGCC           TTGCTGTTGGGAATA  95 78
   Rpal_0959 NONE
        gltD 1026570 .. 1026601 +  -8.6  -2.52464   CGGGCTCGACCCGCG      CATCCATCGCGCGC ATTA GCGCGCGATCGACA       TCACTTAAGCGAAGA  53 107
   Rpal_0961 1027383 .. 1027426 +   -11  -3.16191   GGACGGGTTGAGCGC AGCGAAACCCATCACCGC CTCGCCGC GCAGCGATGGGTTTCGCG TTGCTCAAGCTGTCC  67 158
   Rpal_0964 1031967 .. 1031999 + -12.5  -3.71848   GAAGATCGAGAAGAA      GCCCGACGCGCTCGG CGG CGGGGCGCGGCGGCC      TTGTTGCTGCGGCGG  81 118
   Rpal_0969 1037424 .. 1037459 +  -7.4  -2.70932   TCGCGCTCGGCATCC    GGGTGGCGCTGGCTCG CACT TGAACCGGCGGCGCTC     TGCTTAGCCGAACAG  52 3
   Rpal_0972 1039684 .. 1039728 +  -2.6  -3.91897   CGTGGCGTCCTTGAT GG-CGGCGCAGCG-GCGCACGC CGA GCTTGCGCTCGCCGGACGGGCC TTTGTACGTCGCCGA  56 368
   Rpal_0976 1043069 .. 1043083 +  -2.1  -3.78934   CGCCGCTAGAATCAG              C-CTGG GGAG CCAGCG               TTCTTCTGGGCACCG  52 378
   Rpal_0977 1043411 .. 1043451 + -11.1  -3.03771   GGTGGCGCCGGTGCA  GCTTCGGCAATGCCGCTTG CCA TAGGTGGCGATGCTGAGGC  TCTTGCAAACTATAC  62 203
   Rpal_0981 1046342 .. 1046354 +  -6.2  -4.32402   GAAGCGGCGCAGGCC                GGGC TGCGC GCCC                TTGTTTTCCTTCGGC  73 166
   Rpal_0983 1048115 .. 1048149 + -10.6  -3.01712   TCATCGCCGCATCGA     CGTCCATCGGTTCGCC GAA GGCGAAGCCCTGGGCG     TATTCGCAGCCGAGC  62 303
   Rpal_0986 1052562 .. 1052583 + -11.5  -5.05782   CTGTTATCAACTTAA           AAGCCGCCG GAAA CGGCGGCTC            TTTTTTGGCCTCGGT 100 223
   Rpal_0987 1053438 .. 1053457 + -16.4  -4.06786   TCTGCCAACGCAAAA            CGCCCCGC GCGA GCGGGGCG             TTTGTCGTATTGGGT 100 169
   Rpal_0989 1056015 .. 1056032 +  -8.3  -3.07043   TCCACAGCATGTTCA             GCACCGG CCGG CCGGAGC              TGTTGAGCTCCTCGC  55 195
   Rpal_0993 NONE
   Rpal_0994 1060658 .. 1060716 +  -5.5  -3.43264   TGACTGTTCGTGCAC CGGG-GCGCGACGTGTT-GTCGCTCTGCG CGTGC TGCAAAGC-ACGAACATG-CGCGCGCTCG TTGTGGTGCCTCCTT  55 38
   Rpal_0995 1061104 .. 1061119 +    -9  -2.53263   GCGGCGTTTCGGCTG              GTTCGC GTGG GCGAAC               TAAGTTCGAACTGAG  56 7
   Rpal_0996 1061453 .. 1061483 +   -19  -4.91084   ACTTGAAAATTCGAA       GGCCGGCACCTGCG CCC TGCAGCTGCCGGCC       TTTTCTTATTCGCTG 100 77
   Rpal_0999 1063035 .. 1063051 +  -8.7  -3.16264   GGGGCGCCTCCACGA              GTTCGGG CGT CTCGAAC              TGTTCGTGCGTAGTT  58 116
   Rpal_1002 NONE
   Rpal_1003 1066934 .. 1066981 +   -12  -4.56597   CCGGCGCCTACAAGA AGACTTGGCGCTGAC-AGCGTGG CGC CGACGCTCGTCGGCGCCGAGTGA TTTTTCGCGAACCAC 100 12
   Rpal_1004 1068163 .. 1068196 +  -5.9  -3.45366   GCATCATGTGAAGAA     GATG-GATCGCCGGGT CGA GCCCGGCGATGACGGC     TTACTTGGTTCGAAG  55 252
   Rpal_1006 1070357 .. 1070377 +  -6.1  -3.02166   TCAGCGGCTTCAGGA            TCCGCGC GAGTTCG GCGTGGA            TGGTTTCGTTGCCGC  49 74
   Rpal_1016 NONE
   Rpal_1017 1080995 .. 1081010 +  -3.2  -4.07568   CGCATCGCTGTCACA              GGCG AATACTCG CGCC               TTTTCGGCGAGACGC  59 520
   Rpal_1026 1091223 .. 1091247 +  -5.6  -4.25681   CCACCGCTTCGGCCG          GCAGCGCG CAGATTTCC CGCGCGGC          TTTCTTGGCTTCCAT  69 222
   Rpal_1029 1096330 .. 1096349 +  -8.6  -3.61398   AGCGCTTCTTCCTGA            TCCCGAAG GACT TTTCGGGA             TTCTTCCGGACGACC  65 176
   Rpal_1030 NONE
   Rpal_1031 NONE
   Rpal_1032 NONE
   Rpal_1033 1099465 .. 1099479 +  -2.1  -3.62046   CCGTCATGAGCGCGA              CGTCGG AGCG CC-ACG               TTCTTCCCGAGATGG  49 32
   Rpal_1034 NONE
   Rpal_1035 NONE
   Rpal_1036 1101363 .. 1101375 +  -3.3  -4.32177   CTTTCGGCTTTCCAT                TTGGC GCC GCCCA                TTTGTTCTGCCCTGA  64 86
   Rpal_1037 1102427 .. 1102449 +  -6.2  -4.09739   CAATCGGCGCGCAAA           TTTGACCCCG TAT CGGCGTCCAA           TTTTGACCCCCTTGA  65 21
   Rpal_1042 1110239 .. 1110261 +  -3.2  -4.65895   GTGTCTGTCACGTCC           GCCAACTGCG CAA CGGCGCTGGC           TTTTTCGGTCGGCAC  69 109
   Rpal_1058 NONE
   Rpal_1059 NONE
   Rpal_1060 1128281 .. 1128293 +  -4.8  -3.91144   ATCGGAGCGCGGACG                CCGA CGGTC TCGG                TTTCTGCGCTCTACC  60 310
   Rpal_1062 1128947 .. 1128965 +    -3  -4.16016   ACCGACTAGGCAAGC             CGAACAAC GTC GGTGATCG             TTTCTTACAAGGTAA  61 61
   Rpal_1066 1134412 .. 1134435 +  -7.4  -2.61239   AGAGGTCCATTACCA          CCAAGTCCGTG ACG CACGG-CATGG          ATTGTGAACTCTGTC  51 484
   Rpal_1068 NONE
   Rpal_1069 NONE
   Rpal_1070 NONE
   Rpal_1071 1136410 .. 1136446 + -18.7  -3.71649   AAAAGAAGTAATCAC    CGGAGCACGGAGGCCGA ACG TCGACTTCCGCGCTCCG    TTTGGCGTTTCAACC 100 30
   Rpal_1072 NONE
   Rpal_1073 1139416 .. 1139443 +  -8.3  -2.84693   CTCGCGCGCCGGAGA        AGCGCTCGCCG TGATGC CGGCGAGCGAA         GTTGTTGATCATCGC  55 12
   Rpal_1078 1144910 .. 1144940 + -15.6  -2.72839   CCGCCGAAGGAGGAA       GTGATCCGACGA TGTTAGT TCGTCGGATCAC       TGCTTCACAATCATT  78 44
   Rpal_1080 1146191 .. 1146214 +    -3  -4.43208   ATCCGTTCTGCCGCA          GCCGGAGCGCG ATC TGCGC-CTGGA          TTTGTTTCGCGGTCT  67 352
   Rpal_1082 1147942 .. 1147962 +  -7.5  -3.30243   CCAAGGTAGGGATTG            TCTTCGGCC AAA GGCTGACGA            TTGTCGCGGATCGAT  56 170
   Rpal_1084 1150424 .. 1150439 +  -4.6  -3.21276   TGCTGCCGCTGATCG              CGACGT TCTG ACGGCG               TCTTCTCGGAAGCAG  48 15
   Rpal_1085 NONE
   Rpal_1086 NONE
   Rpal_1087 1154532 .. 1154553 +  -5.7  -3.85698   TGTTCGTATACTGAA           GGGCGGTGG CGCA CTTCTGCCC            TTTCTACGCCGACAG  62 518
   Rpal_1089 NONE
   Rpal_1090 NONE
   Rpal_1091 NONE
   Rpal_1092 NONE
   Rpal_1093 1159884 .. 1159922 + -10.9  -3.14051   AGGCCAAGTAAGCAG   GCGGGCGTGGCGATGCC GCTCA GGTATCGCCAGGCACGG   TCTTGCTGGACATCG  67 30
   Rpal_1094 1160732 .. 1160754 +  -6.2  -3.53811   TTCGGCGTGCAAAAA           TTGGACGCCG ATA CGGGGTCAAA           TTTGCGCACGATGAC  57 138
   Rpal_1095 1161855 .. 1161881 +  -3.6  -3.16921   GCACATCGTTCGAGT         GGGGTCAGGC AACGCCG GCCTGAACGC         TTCCTGACGCTTCCT  44 3
   Rpal_1097 NONE
   Rpal_1098 1164583 .. 1164613 +  -4.6  -3.63073   AGCGTAGGGCAGTTG       CGTGTCACTTCGTG GCT CGCGAAGTGTAAGG       TTCTTCGACCCTGTA  55 183
   Rpal_1099 1166397 .. 1166407 +  -8.2  -4.07868   GCCCGCTTCCGAGAT                 CGCC GGC GGCG                 TTTATGTCGATATGC  72 264
   Rpal_1108 1177516 .. 1177556 +  -9.5  -3.68222   GCGAAGCAATGACGG  CCCAGTGTTCGCCGCCGCC GTC GGAGCCGGCGAACAGGGCG  TTCTTGCGGTTCAGC  71 499
   Rpal_1119 NONE
   Rpal_1120 NONE
   Rpal_1121 NONE
   Rpal_1122 NONE
   Rpal_1123 NONE
   Rpal_1124 NONE
   Rpal_1125 NONE
   Rpal_1126 NONE
   Rpal_1127 1201179 .. 1201190 +  -7.2  -3.86346   CCCACCATGAATCCA                GCCG CCCG CGGC                 TTTCTGGCGACGTGA  64 86
   Rpal_1133 NONE
   Rpal_1134 1205815 .. 1205830 +  -6.2  -3.40597   TCCGTATCAAGTCCA              TGCAAA ATGA TTTGCA               TATTTGCATGGAGCG  55 129
   Rpal_1135 NONE
   Rpal_1136 NONE
   Rpal_1137 NONE
   Rpal_1138 1209126 .. 1209137 +  -3.6  -3.53012   GACTTCGTATTCGCC                GCCG TAAA TGGC                 TTTCGGCAGGCAGAA  51 287
   Rpal_1140 1211681 .. 1211712 +    -7  -3.92522   GCGCATGGTCGCCAA      GCCGCTCGGGTCCG ACGA CGCCCCCGCACGGC       TTTCTCGAATTCCCG  65 105
   Rpal_1141 NONE
   Rpal_1142 1213578 .. 1213605 +  -8.4  -2.78715   TAACTGAAATCCCAG        CCATCGACTTCG ACGA CGTAGTCGATGA         TCTCCTCGGGCGGTT  52 457
   Rpal_1146 1215627 .. 1215672 + -13.9  -2.78384   CACCGCCAGCCAAGC GGCCCGTCGCCCGTG-CCCGCG CAC CGCGGGGCATGGATGACAGACC TGTGCTGCCGGCGCC  72 97
   Rpal_1147 NONE
   Rpal_1148 NONE
   Rpal_1149 NONE
   Rpal_1150 1219564 .. 1219593 +  -2.2  -4.18018   TTCTGCCAGCTCGAT      C-TCGA-TGACGCG CTCC CGCATCACTCGACG       TTTTCGGTCAACCGG  59 467
   Rpal_1152 NONE
   Rpal_1153 1224530 .. 1224544 +  -6.4  -3.87994   TTGCTATCAAGCACT               TGATGC AGT GCGTCA               TTTCTGCGCGTCGCT  65 153
   Rpal_1154 NONE
   Rpal_1155 NONE
   Rpal_1156 1228345 .. 1228395 +  -6.2  -3.09635   CCCGTCATTGCGAGC GCAGCGAAGCAATCCAGAGGTGCG GTGCA CGGAGC-C-GGATTGCTTCGTCGC TTCGCTCCTCGCAAT  49 63
   Rpal_1157 NONE
   Rpal_1158 1229612 .. 1229641 +  -2.7  -3.75665   GCGGCCGGTGTCGCG       CTCGCGCTCCCGCT GTA AGCGTCCG-GCGAG       TTTGCTGCGATGTGC  52 8
   Rpal_1159 1230036 .. 1230049 +  -2.3  -3.14211   TTCCATAGGCCCGCC               TCGGC AGCG GGCGA                TTGGTCACAACCGAT  43 108
   Rpal_1160 NONE
   Rpal_1161 NONE
   Rpal_1162 NONE
   Rpal_1163 NONE
   Rpal_1164 NONE
   Rpal_1165 NONE
   Rpal_1166 NONE
   Rpal_1167 NONE
   Rpal_1168 NONE
   Rpal_1169 NONE
   Rpal_1170 NONE
   Rpal_1171 1240721 .. 1240734 +  -4.5  -2.79302   CGATTTGCGCAAGGG               CCTCG CCGA TGAGG                TCTGATCGCGGTGGT  42 7
   Rpal_1172 1242070 .. 1242086 +  -6.5  -2.72379   TTTACCTTGGCGCTT              CCCGC GGCCTGA GCGGG              TAGTTGGCGGCTTCG  49 14
   Rpal_1173 1244740 .. 1244795 +  -4.8  -3.74693   TCATAGCGCCGGATC GGC-ACT-GC-GACCGAACG-GAAGCCG GGCT CGGCTTCGCGATCGACCAGCGAGTAGCC TTTGGTGCGATCGGC  55 191
   Rpal_1175 NONE
   Rpal_1176 1248542 .. 1248556 +  -4.2  -2.53271   ACCGAGTGGGAGCAG               CGCGAA TAT TTCGAG               ATGTTCTAGCGGTCA  41 2
   Rpal_1177 1249798 .. 1249835 +  -6.9  -2.80443   AAGCTGAAACTTTGA   GCTCTTCGCGCCTTCGTT CGT GACTT-GGCGCGGAGGGC   TCTGGTCGACTATAG  49 39
   Rpal_1178 NONE
   Rpal_1179 1251850 .. 1251868 +  -2.2  -3.15544   ATTTCAGGCAGGCGA             GGGCGGCG CGA TGACGACC             TTGCTCGAAGTCCAG  43 12
   Rpal_1180 NONE
   Rpal_1181 1253553 .. 1253577 +  -3.6  -3.61398   TTGCCAGCGTCGGGG         GCTGCTGCGCGA TTG TC-TGCAGC-GC         TTCTTCGGCGGAGGC  51 260
   Rpal_1183 1257161 .. 1257173 +  -6.2  -2.52516   GCTCGCAGAACAGAT                GCGC CATCC GCGC                CTTCATCGTCCGGGC  45 313
   Rpal_1185 1258401 .. 1258417 + -10.8  -2.75838   AAGCCTTTTTGCTTG              CGCGGC CTGTT GCCGCG              TGCTCTGGTTTTGAC  63 58
   Rpal_1186 1259150 .. 1259208 + -15.3  -3.01712   AGCGGCGACTGAACG CCGC-CACCGGCGCCTCCGCGTCGCTGG CTTGAA CCAGC-A-GCGGTGGCGCCGGCGCGCCG TGTTACAGCGAGCGG  81 29
   Rpal_1189 1262620 .. 1262630 +  -4.6  -3.97088   CGTCTTTACGCTCAT                 GGCC ATC GGTC                 TTTCGTGTTGTGAGC  61 414
   Rpal_1191 1263627 .. 1263656 +  -4.2  -3.84451   GAGCGCTGCCTCCAC      ACCGAGCGCGG-CG AAAT CGATCGCGC-CGGC       TTTCACTTTCGGCGA  57 204
   Rpal_1194 1265762 .. 1265794 +  -2.6  -3.96327   GGCATTGCGGGGCAG     GGGCTCGGAGCGGAT GATG ATGCTCTCCG-GCAC      TTTGTAGTCCGACAT  56 243
   Rpal_1196 1267750 .. 1267778 +   -11  -4.32046   GGTGGCGCCGCCGCC       CGCGCCGT-AAGC GCAT GCTGGACGGCGCG        TTTGATTTTTCGAAG  89 16
   Rpal_1197 1268515 .. 1268533 +  -7.4  -3.53811   CGGGTCGGTCTCTGC             TGTCCGGA TTC TCCTGACA             TTTGACGCACGTCAA  62 52
   Rpal_1198 NONE
   Rpal_1199 1270342 .. 1270370 +   -11  -3.06696   GAATTGATCACCGCC       GCGCGCGGCATAG CGCG CT-TGCCGCTCGC        TCTGTTGCGCCAACC  62 492
   Rpal_1201 1272264 .. 1272294 + -17.6  -4.27316   GCGAAAGTCCGATTG       GAGCGGCCGTGGTC TCA GGTCACGGCTGCTC       TTTTAGGTTCGACGA 100 48
   Rpal_1203 1275162 .. 1275190 +  -5.8  -3.53091   TCCGGGGCGCGAGCG        TTCGCCAGGGCG ATAGG CGCCGGGGCGGG        TTTGCCGCGGCCGAT  55 49
   Rpal_1204 1276016 .. 1276056 + -18.4  -3.45366   AGGGACTGTCTCACC TGGTGCGCGGGGCGACG TAACCGAT CGTCGCCCCGC-CACCG  TTGCTTAGTTCGAGG  95 6
   Rpal_1207 1278719 .. 1278734 +  -2.5  -2.70932   TTCGCAAAACGTAGG              TGCGG CGCGAT CCGTA               TCATTGGACCACGCA  39 27
   Rpal_1208 1279541 .. 1279554 +  -9.5  -3.14602   CCCGGCCGTGTTGAA               GCCGC CGGA GCGGC                TCTTGCTCCCCTCAC  61 227
   Rpal_1209 1280038 .. 1280071 + -17.5  -2.84602   AGTGCCGCGACGAAC     CAATCCAGGGCCCCG TGCT CGGTGCTCTGGATTG      CTTTGCTACGCTCGC  87 82
   Rpal_1211 NONE
   Rpal_1212 1281775 .. 1281791 +  -3.5  -3.53444   GTGACAGGCTGGTGC              AGCCGTG AAC CTCGGCA              TTTCAGGCCGCCTGA  49 18
   Rpal_1213 1285004 .. 1285014 +  -4.6  -3.05384   GCCACGGCAAAGTGA                 TGGC ACT GCCG                 TTCGATCCGAGGCAC  47 26
   Rpal_1214 1285824 .. 1285834 +  -8.2  -3.71378   AATGACGCAGAGCGG                 GCGG GTT CCGC                 TTTCAATCTCGCCTG  69 131
   Rpal_1215 NONE
   Rpal_1216 NONE
   Rpal_1217 1287922 .. 1287957 +  -9.8  -3.96216   CAACCACGGCCAAAA    G-AGCTCCGGTTCTGAT TGG ATCAGAACCGGAGAAAC    TTATTTGCGTCAGGC  76 80
   Rpal_1219 1290425 .. 1290456 + -10.9  -4.16943   CTGCAGATATTCATT      CGT-CATGCCCGGC CTTGT GCCGGGCATCCACG      TTTTGCGGTATGCCG  84 56
   Rpal_1220 1291145 .. 1291189 +  -3.4  -3.69483   CGCCACGGAACCATC GCCTCCAATC-ACAAGGCGCA ACAA TGCGCCGCGACGATGGGAGGA TGTTTTGGGTCAGAT  54 89
   Rpal_1221 NONE
   Rpal_1222 1292741 .. 1292778 +  -4.9  -2.70932   TTTGCCGAAACCCTG  GTGGCGGATCGGGCGGCG TAACC CGTCGC-C-A-CCGCCGC  TGGTTCAGCGCGGCG  44 5
   Rpal_1225 1295983 .. 1295995 +  -3.3  -3.05384   AATTGCGGGCATGAT                CCGGA ATT TACGG                TTGCGTAGCCCGGGC  43 74
        rnhB 1296882 .. 1296912 +  -8.9  -2.88544   CACCGCGTGAGTGCG      GCCGCGCCGGTTGC GCGT GCGGCCGCCG-GGC       TCTATCACGGTCAGA  55 31
   Rpal_1227 1298526 .. 1298557 +  -7.3  -3.01712   TTACTTAGTTGGACG     TC-GCG-GCGAGCGC GGTG GCGATCGCGCGCAGA      TCTTGCCAGGCGAGC  54 95
   Rpal_1229 1301415 .. 1301439 + -11.3  -4.26076   CGACGCGATGCTGCC          GGCTCGGCGGC CGG GCCAACGAGCC          TTTTCCTGGAGCTAG  89 235
   Rpal_1230 1303249 .. 1303264 +  -6.8  -3.53012   AAGGGCGGCGGCTGA              GGC-GGC GCG GCCGGCC              TTTGCGGCGGAAACG  57 26
   Rpal_1231 1304324 .. 1304368 + -24.3  -3.61652   CAGTTCAGAACATCT CGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACG TTGCTTGTTTGAGGA 100 97
   Rpal_1233 NONE
   Rpal_1234 1306662 .. 1306672 +  -2.4  -3.57462   ACTACTGCGGTTGCG                 GCTC GTT GTGC                 TTTGCCGGTGCGCTG  49 72
   Rpal_1235 1307775 .. 1307793 +  -5.8  -3.74693   TTGAAAGATGCACGG             CCGCGCGG CCT CCGCGCCA             TTTGGTCCCGTCAGC  60 37
   Rpal_1236 1308440 .. 1308461 + -10.1  -4.07687   TTGATTTGCCGGGGC           GCGGCCG ATACGGTC CGGCCGC            TTTTCCAAAAACCCT  78 395
        glyQ NONE
   Rpal_1238 NONE
        glyS 1312411 .. 1312442 +  -5.9  -4.06687   TTTTGGTCCTCCCAT      GGT-CATTGCCGGG CTCGA CCCGGCAATCCATC      TTCTTTGTGAAGAGT  65 198
   Rpal_1240 1314199 .. 1314212 +  -3.7  -3.79251   GATGGCTGGGTGGCC               TCGCC GCTG GGCGC                TTTGATGATGAGGTA  57 424
   Rpal_1242 1315770 .. 1315787 +  -2.5  -4.73094   TTGAGACCGCCAAAA             CGTGGTC TAAA GCCCCCG              TTTTCTGTTCCTCTT  72 65
   Rpal_1243 1318878 .. 1318899 +   -13  -4.33928   TGATCAGATTTCGAA           TGGCCGGG CTTCGT CCCGGCCA            TTTGTATTTGGGCTG  95 55
   Rpal_1244 1320601 .. 1320631 +  -9.1   -4.0825   GGGCAACTAAGCGGG      CAGCGC-GCACAGGC CTG GCCTGTGTTGC-CTG      TTGTTTCCTTGACAG  76 31
   Rpal_1248 1326244 .. 1326263 +  -7.8  -4.08706   ACTTTACCAACCAAG            CTGCGCCA TTCT TGCCGCAG             TTTGTATGGTAAGGA  70 62
   Rpal_1249 1327219 .. 1327231 +  -4.8  -3.39784   GCAGATCAGCCACGC                CACC GAGTA GGTG                TATTGTTCGGCATCG  51 338
   Rpal_1254 1332239 .. 1332263 + -14.2  -5.21709   ACGAAGCCCTCTTCG          CCGGCGCCGC AGAAC GCCGCGCCGG          TTTTTTCATCTGCCC 100 61
   Rpal_1257 1335265 .. 1335295 + -11.1  -2.52516   GTTTCCTGCGGCCGC      CGCGTCACGCGCGG TGGC CCGC-CTTGGCGCG       ATTGATGGTCGAACG  62 64
   Rpal_1258 1336197 .. 1336219 + -11.2  -2.73875   AGCAGTCTCGGCGCG           CTCCACCGCG AAG CGCGATGGGG           TAGTGTTAGCACGCG  63 332
   Rpal_1263 NONE
   Rpal_1264 NONE
   Rpal_1265 1339124 .. 1339147 +  -7.5  -3.51825   AGCAGAGCCTTGATC          GACCGC-ATC AGCTC GATCGCGGTC          TTGTCCTTCACCTCG  60 83
   Rpal_1268 1342787 .. 1342817 +  -5.5  -3.85698   GGTCACCCGACAATT      TTTCGGCAGACGTG TTCT CACGATTGC-GAAA       TTTGTCGCCGACGAG  62 69
   Rpal_1269 NONE
   Rpal_1270 1345066 .. 1345092 + -13.7  -3.06302   GTTTTGTGCGTTCAA        CCGCCGCCC-CT AACC GGAGGGCGGCGG         TTGGATAAAAATCCT  75 41
   Rpal_1272 1347734 .. 1347777 + -15.2  -2.75064   CGCCTCGCTCTCTTC CGGGAATTGCAGCGACCGGA CGCG TCCGGTCGCCGATCTTCCCG TGGTTGCGTCGCGGA  78 73
   Rpal_1273 NONE
   Rpal_1274 NONE
   Rpal_1275 1349034 .. 1349054 +  -6.8  -3.50219   TTGACCCGAGTTTCA           CCTGCCGGC CTTG GCCG-CGGG            TTGTGTGAGGATATT  57 37
   Rpal_1276 NONE
   Rpal_1277 1350930 .. 1350950 +  -6.7  -3.57792   TGAGCAGTGGTGAGA            CGTCGCTTC GCG GTGGCGGCG            TTTCGGAATAGGTCG  58 143
   Rpal_1279 1351717 .. 1351773 + -20.2  -3.00298   CGTCCCCGCGTGCGC GGCGGTTCGCCGCCGCGTTCGGTTGAT CAAG ATCAACAGGACGCTGCGGCGC-TCGCC TCTATCCTTCGCAGG  93 82
   Rpal_1280 1352504 .. 1352525 +  -3.6  -2.56596   TCTCCTCGCAGATTC           TCGACGTC TTCTCT GACGCCGG            TGACTTGGTCACAGA  39 44
   Rpal_1281 1352810 .. 1352840 + -12.6  -3.38162   ACTACCCAAGTGTGG      CTCTCGGG-GCGG CGCAGC CCGCTCCCGGGAG       TTGCCTTTGTTGAAT  74 46
   Rpal_1282 1353294 .. 1353316 +  -8.4  -3.05384   GAGAATTTCGCGCAA          GGC-GGCCG CCCGGC CGGCCCGCC           TTGCGTCGCCGCCCG  57 82
   Rpal_1283 NONE
   Rpal_1284 1355728 .. 1355748 +  -7.5  -2.60392   CAGGCGTTTTCGTAA            GGCGTGG CGTAAGT CCGCGCC            CTTCGTTCCGCGCTC  51 26
   Rpal_1285 1357023 .. 1357048 + -10.4  -3.09933   GCCCTGCCGCGAGCC         CGGCCGGATC GTTGAA GATCCGGCGG          TTGCGTGAGTTGGCG  62 194
   Rpal_1287 1359985 .. 1360018 +  -2.9  -4.57073   GGTTGTAAAACACAA     TCTGCTCACCTCGTG TTCG CACGAGGGGCGTCGC      TTTTTCGCGCGCCTC  69 448
        ruvC 1360738 .. 1360787 +  -2.7  -2.60244   AGCACAGTGCTCGGG GAC-CCCCACCCCCGACTCCTCC CCGCGA GGGGGAGG-GGGGAAGAGGCGTC TCGCTTGGTTGGGGC  38 124
        ruvA NONE
   Rpal_1291 1361845 .. 1361855 +  -2.4  -3.25192   ACCGAACAAATATAG                 CCGG GAG CGGG                 TGTTGTGAGCTTGGC  43 7
        ruvB NONE
   Rpal_1293 1363589 .. 1363612 +  -6.7  -3.92324   GCGGCCGTTGCCTGT          TTCCCGAGC TAGGGC GCTCCGGAA           TTTGATGTTACAGGG  65 51
   Rpal_1294 1364988 .. 1365001 +  -5.9  -2.87132   GCCTTCCGAGCTGCC               TCGGG TCGC CCCGG                TGTCTCCCGGACAGC  48 40
   Rpal_1295 NONE
   Rpal_1296 1366836 .. 1366851 +  -4.6  -2.67188   CCGACGATGTGCCGG              GGCTCG CCGC CGATCC               GTTCTGATCGTGTCG  43 3
   Rpal_1297 1367460 .. 1367482 +    -4   -2.8007   GGGGTCCAGGCCCTC           GGTCATCCGC TTC GTTGACGACC           TCGTTCCTGGCTTGG  42 62
   Rpal_1298 NONE
   Rpal_1299 1369491 .. 1369521 + -10.3  -3.16564   GCCGTTGACGCGGAT      GCCGAGCGCGG-CG AGTT CGACCGCGCACTGC       TTGGTGAAGTGCGCC  62 307
   Rpal_1301 1370448 .. 1370481 + -16.8  -2.60723   TGATCGTCGCTTACG     GAAGCGCCGCCTGCG TTGTT TGC-GGCGGCGCTTC     GTTCGTTGGCACTAA  80 38
   Rpal_1303 1371453 .. 1371463 +  -3.2  -3.65351   GCCTGCCGGCAATTG                 GGTT CGT GACC                 TTTACATCGCCCTCA  51 122
   Rpal_1304 NONE
   Rpal_1305 1372840 .. 1372875 + -11.7  -5.25803   GACCCTCCAGCGCCA    ACCGCCGCCCGCCTG AGCCCC CAGGCGGGCGGCTTC     TTTTTTGTCGCGCTT 100 56
   Rpal_1306 NONE
   Rpal_1307 1374395 .. 1374416 +  -5.9  -3.72695   CCCTGTTATAGTAAC           CCCTTATTA ACCC TGATGAGGG            TTTGGTGAGGAACGT  60 105
   Rpal_1308 NONE
   Rpal_1309 NONE
   Rpal_1310 NONE
        tolB 1378284 .. 1378336 + -17.1  -2.80935   CTGTCCTGACCACTG AGCGTTGAACTCACCGTAAGTTCCG AGC CGAGATTTACGGTGAGTTCCGCGCG TGTCGTCGGTGCCGT  84 32
   Rpal_1312 1380899 .. 1380915 +  -3.7   -3.1582   ATGCTTTGCCGGTCC              GTTAAGG ATT CGTTAAC              ATTTTCGTACGGTCG  47 146
   Rpal_1313 1381918 .. 1381941 +  -3.8  -3.18681   CATTAACCATCACGT          TTGCTTTTGG CCGA CCGGGGGCAA           TTGATCGAGTTCGGC  47 221
   Rpal_1314 1382574 .. 1382591 + -14.1  -5.65496   ATCGAAGTCGCAAAA             CGGCGCC GCGG GGCGCCG              TTTTTGTTTTTGGTG 100 53
   Rpal_1315 NONE
   Rpal_1316 1384979 .. 1385004 + -11.9  -2.70525   TAGATTAGGCGAACC         GGCTCT-CGGGA AGC TCCCGCAGGGCC         ATTCGTTTCGGCGCC  66 170
   Rpal_1317 1387011 .. 1387028 + -14.1  -5.49234   CCTGACTTCGAAAAA             CGCGGCG GCGA CGCCGCG              TTTTTTGTTGCGTGT 100 54
   Rpal_1318 1387840 .. 1387853 +  -5.9  -2.52516   GCCGCCAGTGGCGAC               GTCCC ACGC GGGGC                ATTCGTCATGACCGA  45 1
   Rpal_1319 1388349 .. 1388368 +  -3.4  -3.53012   GCGGCCGCGCTCGTT            CCAGGACG AACA CGCCATGG             TTTACCGGCGAACCC  49 196
   Rpal_1320 1389129 .. 1389154 +  -3.1  -2.89564   CGGCGCGACAACCGC         CTCGCGCACAG CAGC CTGCGCAGGAG          TATCTCGCATGACCA  42 115
   Rpal_1321 1390700 .. 1390753 +  -7.6  -3.13343   ACTTTCCACGTCATT GCGAGCGAAGCGAAGCAA-TCCGGCGC CGA GCGCAGAACTTGATT-GCTTCG-TCGC TTCGCTCCTTGCAAT  56 69
   Rpal_1322 NONE
   Rpal_1323 1393391 .. 1393401 +  -8.2  -2.77899   GCCTGGAACGCCGGT                 CGCG GGG CGCG                 TGATTGCTGGCCGAG  54 46
   Rpal_1324 1394412 .. 1394434 + -20.6  -3.21747   ATCCTGGTTTGCAGA           GGCCGCGGTC CTG GACCGCGGCC           TTCGTCGTCACGTCC  95 57
   Rpal_1325 1395799 .. 1395822 + -19.6  -5.69262   TTCTGGGGGGCTGAA          GGGCGGCAGG GTGA CCTGCCGCCC           TTTTTGTTTTTCTGC 100 52
   Rpal_1327 1399757 .. 1399780 +   -21  -4.41047   CTGAATTGCGCCAAA          GCCCCGCGGC CTCG GCCGCGGGGC           TTTTCGTTGCAGGCT 100 53
   Rpal_1328 1400559 .. 1400609 +  -5.3  -2.82516   CCGGATAGCTGCGGT CGAGATGGG-CGAGCAGCGCCTGCT GCC AGCGGGCGC-GCTTGGCCCGATAGG TGTCCTGATCGAGGC  46 294
   Rpal_1333 NONE
   Rpal_1334 1407457 .. 1407499 +   -12  -3.29471   ACCGTTGAGTAGCTT GGCGT-CGTCGTCGCGGGTG TCGAC CACCGGCGGCG-CGTGCGCC TTGATCTCGTCGACG  68 119
   Rpal_1336 1409421 .. 1409449 +  -3.8  -3.42996   CGCGGTCGCTGCCCG       CGTCGGCGAC-AC GGTC GTAGTCGTTGCCG        TTCTGATCCATCATG  49 187
   Rpal_1343 NONE
        ubiA 1417223 .. 1417239 + -15.1  -2.94747   GTAGTATGGCGTGAG              GCCGGGC GAG GCCCGGC              TCTCTCATCCAATCG  79 27
   Rpal_1346 NONE
   Rpal_1347 NONE
   Rpal_1348 NONE
   Rpal_1349 NONE
        lpxK 1422952 .. 1422970 + -13.2  -3.05844   AGCTCGCCGGGCGGC             GCTGAGAC GCG GTCTCAGC             TCTTGGGCTGAAACG  71 21
   Rpal_1353 1426506 .. 1426537 + -10.9  -3.14878   GGTTCGCTCAGCATC      CGT-CATGGCCGGG CTCGT CCCGGCCATCCACG      TCTTCACTTGCGGCA  67 57
   Rpal_1354 1427971 .. 1427981 +  -2.4  -3.70109   CATGAAAGTGGAAGC                 CGTC ATC GTCG                 TTCTTGGCTCGTCTC  51 450
   Rpal_1356 1430389 .. 1430432 + -13.9  -2.71791   TTGGCCTTGCAGCGC GCACGGCTGAACCTCTCCCCG CGTG CGGGGAGAGGT-C-GACGCGC ATTTGCGCGGCGGGT  72 62
   Rpal_1357 1431390 .. 1431403 +  -4.5  -3.12327   CGGCGATCCAGAATA               CTTCG GCTT CGGAG                TCTTCGCTGTCGAGC  47 258
   Rpal_1363 1437023 .. 1437046 + -19.6   -5.0065   AACTTGGATCATCAC          TCCCGGCCGG TTTT CCGGCCGGGA           TTTTCTTTGTCGGTG 100 109
   Rpal_1366 1439430 .. 1439452 +   -17  -4.85782   CGCACGGGTTTAGAA           CGCGCTCCTC ATC GAGGGGCGCG           TTTGTTTTTGCAGCA 100 62
   Rpal_1370 1443453 .. 1443471 +  -4.5   -2.8294   CGACAAGGTCGGCAA             GGTGATC CGCGC GGTCGCC             TGATTCTGCCCGATA  44 4
   Rpal_1371 1445116 .. 1445130 +    -7  -3.44319   GCCGCACTGGTTCGC               CGCGCC GCC GGCCCG               TTCTGATCGATTCAG  57 5
   Rpal_1372 1445996 .. 1446022 +  -2.1  -3.56092   TGACCCGCGAGCTGC         GCTGGTAGGCG CAGCT CGACTTCCACC         TTTCAAGAGTGATCA  49 18
   Rpal_1377 NONE
   Rpal_1378 1454518 .. 1454554 +  -3.1  -3.16564   CATTCTGCGCGCGCT   GTACGA-ACGGGTC-TG CCTGC CATGATCCGTGTCGTCC   TTACTGAGATCGGAA  44 1
   Rpal_1379 NONE
   Rpal_1380 1456129 .. 1456156 + -11.2  -2.59431   CTCGTCCGGAAAATA        CGCGACCGCG TGCTGATC CGCGGCCGCG         TCAGTTATGGCGAAG  62 99
   Rpal_1384 NONE
   Rpal_1385 1460533 .. 1460546 +  -9.5  -5.60689   CAACGAGACAGGAAA               GCCCC TTCG GGGGC                TTTTTTGTTGTCTGC 100 59
   Rpal_1386 NONE
   Rpal_1387 1461710 .. 1461750 + -23.5  -3.63922   CCGATGCGATCGTCT  GCAACGCCCCGTTTCCGAT GCG ATCGGAAATGGGGCGTTGG  TCTTTTCGGGGGCAT 100 94
   Rpal_1390 NONE
   Rpal_1391 1464879 .. 1464924 + -18.4  -3.07816   AATTTGACGCAAGTA GCGGCCTCGGTGCGGGG GATCAGCGCGCAA CCCCGC-CCGAGGCCGC TTGCGTCGATCGGCG  90 56
   Rpal_1392 1466080 .. 1466116 +  -8.1  -3.65351   CTAAGGACACGCTCA   GGATCGTCATGCGCGGG CTAGA CCCGCGCATC-C-ATCC   TTTAAATCACCATCC  65 37
   Rpal_1393 1466874 .. 1466884 +    -4  -4.15044   AGTAAACACTGACTG                 TTCA AAG TGAA                 TTTCTTCGCGAGCCC  63 129
   Rpal_1394 1468009 .. 1468032 +  -3.7  -3.07935   TCCGAGCCGCCGTCT          CGCTCCAGC ATCCGC GCAGGACCG           TTGGATGACTGCCAT  45 41
   Rpal_1395 1469508 .. 1469543 +  -8.8  -3.83026   GAACAGCAGTGGATA    GCCCTTGGCGCGGCCG GCGT CGGTTGCGCGGGTGGC     TTTGGTCTCGGCGAC  68 237
   Rpal_1397 1470901 .. 1470946 + -10.6  -2.50443   TCTCCGTCCGGATCA GTTCGAGCGGGATGACTT GCCAGTTCAG AAGTCATCCCGCTCCAAG GTTGATCGGATCTGC  59 61
   Rpal_1400 1476303 .. 1476313 +  -6.8  -3.35597   AGTCCAGTGAGCATG                 CCGA GCA TCGG                 TGTTTCCGGGCTGGC  56 349
   Rpal_1411 1490852 .. 1490880 + -19.6  -3.83026   CGTCGAAACATCATC        GCGCCGTCCTGC CTCCA GCAGGGCGGCGC        TTTGCTGTGCGGAGC 100 64
   Rpal_1413 1493476 .. 1493496 + -11.1  -3.32769   GGGGCAAGACCGAAG            CGGCGCATC ATT GATGGGCCG            TTACTGATTTCACGC  69 12
   Rpal_1417 NONE
   Rpal_1418 NONE
   Rpal_1419 1499903 .. 1499950 +  -2.6  -2.68823   CGCTACCAAGCTCGC TTCGGAGGTCTGAGATGTTCCGC GAC GCGCCGCATTTC-GACGTCCGCG ATTATCTCCGCAAGG  39 13
   Rpal_1420 NONE
   Rpal_1421 NONE
   Rpal_1422 1502728 .. 1502767 + -15.3  -3.94404   CGATGCAGCATAAAA G-TA-ATCGACACGCGCCT TGAC AGGCGCGTGTCGATCTAAC  TTTAATTAACTGATT  91 73
   Rpal_1423 NONE
   Rpal_1424 NONE
   Rpal_1425 NONE
   Rpal_1426 NONE
   Rpal_1427 NONE
   Rpal_1428 1509377 .. 1509397 +   -14  -5.38054   TGTCTCAAACCCAAA            TGCCCGGC CTCGC GCCGGGCA            TTTTTCTTTCTAGGA 100 52
   Rpal_1432 NONE
   Rpal_1433 NONE
   Rpal_1434 1515178 .. 1515210 +   -14  -3.10344   CGCTGCAGTGAGTGA      GCGCGCAGGCCGGC GTCAG GCCTGCCCGTGCGC      TGTCTTCACTGCGGC  75 30
   Rpal_1436 NONE
   Rpal_1437 NONE
   Rpal_1438 NONE
   Rpal_1439 NONE
   Rpal_1440 1521094 .. 1521110 +  -5.7  -4.07568   CATTGGTGGCGATCG              CCGCGGC GGC GGTGCGG              TTTTCGACGCCGAGC  64 54
   Rpal_1443 1526889 .. 1526924 +  -9.7  -3.02511   AGGCGCTCTCACTCC    GGACGTCATCGCCGGG CTCGA CCCGGCGATC-CATCC    TCTTCGGAAGATGGA  60 49
   Rpal_1444 NONE
   Rpal_1445 NONE
   Rpal_1446 NONE
   Rpal_1447 NONE
   Rpal_1448 1531865 .. 1531896 + -10.9  -3.10796   TAAGTAACCAAACGT      CGT-CATGGCCGGG CTTGT CCCGGCCATCCACG      TCTTAACTGCTGAGC  66 34
   Rpal_1449 1532473 .. 1532501 +  -5.2  -4.27474   AGCGAAGCGAAGCAA        TCCAGGAGACGG ATGCC CCGAATTCTGGA        TTTCTTCGTCGCTTT  68 60
   Rpal_1451 1534162 .. 1534178 +  -7.9  -4.03234   CGAGGGAGGCGTTCC              GGCTGCG GGC CGCAGCG              TTTCTGTCGAGCCGA  70 235
   Rpal_1452 1536969 .. 1536998 +  -9.9  -3.07443   GTAACCGGTTTCATC       GCGGCGC-TCGGTG AAA CGCCGGCGCGCCCC       TTCCATCGCGTGTGG  62 37
   Rpal_1453 1537939 .. 1537960 +  -3.7  -2.73159   GGTACCTGTGCGCGA           CG-CTGGG AGCTGAG CCCAGACG           GTTTGCCGGCCTTGG  42 13
   Rpal_1454 1540117 .. 1540128 +  -5.8  -3.53012   TCGCTGCTTCGAAAG                CCGA ACCT TCGG                 TTTGGCGGCCCACCA  55 499
   Rpal_1456 1540614 .. 1540654 + -11.2  -4.14615   CAGGTTTTGACGTTT TGACGAAAGCCGGC--CCCG TTT CGGGAAGCCGGCTTTCAGCA TTTTCAAGGGTTTTT  84 53
        fliF NONE
        fliG NONE
        fliH NONE
   Rpal_1460 NONE
   Rpal_1461 1545972 .. 1546019 +   -25  -3.01712   GGCCCCCTCTGGAAG GTCTCTCCTCCGCCCCTCCTCCT GAA AGGAGGTGGGGCGGAG-AGGGGC TATTAGGCAGCAAAG 100 82
   Rpal_1465 1548177 .. 1548203 +  -9.4  -4.10672   GCCGTCGGCACCAAG         CCCGGTTCCGAT TCA ATCGGAGTCGGA         TTTGCTTTAGCTTGC  79 65
   Rpal_1466 1549574 .. 1549601 +  -8.4  -3.13522   AGCTTGGCCAGCATC        TCGGCCTCGCTGT AGC GCTGC-AGGCCGA        TCTTCGTGCGCAGCT  56 221
   Rpal_1468 1551402 .. 1551418 +  -2.2  -3.86897   ACTACCGAGAAATCG              TGGCTG GCGAA CAGGCA              TTTGTGGCCGGTGCC  54 454
   Rpal_1471 1554103 .. 1554150 +  -7.8  -3.68351   GTCATTGCGAGCCGA AGGCGAAGCAATCCAG-GCTC TTTTCGC GGCCTCTGGATTGCTTCGTCG TTTCGCTCCTCGCAA  65 92
   Rpal_1472 1554747 .. 1554764 +  -2.6  -4.15044   CTGCGTCACGGCCGC             CGCGCA CCCCGT TGCGCC              TTTCTTCACGAAAAC  59 123
   Rpal_1473 1556314 .. 1556330 + -10.1  -3.08471   CCAAAGCTGATGCTT              GGCAGCG TCG TGCTGCC              TTGGGTGAAGTTCTG  62 257
   Rpal_1476 1557765 .. 1557802 +  -2.8  -3.82083   GGCGAAGCCGACGAA  GCAAGCCAGCTA--CCGA GTGC TCGGCGTATCTGGATTGC   TTTGCCTTCTGCTCG  54 68
   Rpal_1478 1559645 .. 1559662 +  -5.5   -3.5525   ATCAAACCGGCTCCG             CTTGCGA ATTG TCGCGGG              TTTACAAGGGTATCT  57 456
        dnaG 1562095 .. 1562118 + -13.1  -3.96531   GAGCGGGATCGTGCG          GGGTGGCGC AGGCGG GCGCCGCCC           TTTGTGCGTCTCTCC  86 181
   Rpal_1481 1564305 .. 1564336 + -15.2  -3.56092   AACTAACGAGAGTGA      GGTGGGCACATGCGC GAA GCGCCT-TGCCCACC      TTTCACGCCTGATGA  86 35
   Rpal_1482 1564700 .. 1564712 +  -4.7  -4.64676   CGCTTGCCGACCTGA                ACCGC TTT GCGGC                TTTTCTTCAGGATCA  74 79
   Rpal_1487 1570954 .. 1570967 +  -6.7  -3.76952   AATCGTCAATTGAAC               GGCTT ATCA AAGCC                TTTCAATTAGCTGCC  62 202
   Rpal_1490 1573804 .. 1573838 +  -5.6  -2.53213   GGCTGACGATGTTCT    GGCCG-GCGGCGGTG AAGTAG CATCGGCGCGCGGCA     TCCATTCGCAGGTTG  45 6
   Rpal_1491 1574732 .. 1574756 + -19.3  -4.25104   ATAAGCGAACAACGA          CCGCGCCGGTG GCT CATCGGCGCGG          TTTTGATGCGAGAGG 100 99
   Rpal_1493 1576273 .. 1576330 + -16.2  -2.86785   GCAGTAAGCGCCCGG CTAATCCGGGCGCGCGGCACCGTCAC ATCGAG GTGGCGGTGCTGTTGGCCCGGACCAG CTTGTTGATCTGGTC  83 34
        mnmA NONE
   Rpal_1497 1580800 .. 1580818 + -14.6   -3.2963   CTCGTGCCGCCGGAA             CGTGGCGA GCC TCGCCACG             TTGTCCGGGCATGAT  82 42
   Rpal_1498 1581566 .. 1581584 +    -8  -3.33815   TGGTCGACGCGGCTT             GCTCGGAC GCA GCCCGGGC             TTCCTTGCGGGGCCT  56 424
   Rpal_1500 1582944 .. 1582970 +    -3  -2.79915   TGATCGGAATGGCAT        CCTGGCGCGTT GGCCGA AAC-CGCCAAG         TATGGTCAGATAAGT  40 38
   Rpal_1501 NONE
   Rpal_1502 NONE
   Rpal_1503 1586609 .. 1586622 +  -4.5  -3.92542   ATGCGGCGTCGGACC               CGACCG CGG CGG-CG               TTCTTTGCCGGTAAG  58 111
   Rpal_1507 1591267 .. 1591299 +  -2.5  -2.78912   TTCTCCGCAACGAGA      TCTAACCAACGTGCC TTC GGCGCGATCGGGAGA      GTTCTATGTGTACTC  39 88
   Rpal_1508 1591838 .. 1591857 +  -3.4  -2.79831   TGGCGAAGATGCCGA            GGGGCTCG GCGG CGAGGGCC             TGTGATGCGGGTTCA  40 1
   Rpal_1509 NONE
   Rpal_1510 1593625 .. 1593649 +  -2.7  -2.77791   ACGTCATCGACTTCT          GCATGACTGAC TTC GTCGGCCGTAC          TCATGTTCACTTGCG  39 16
   Rpal_1511 1594734 .. 1594761 + -14.9  -2.71263   CGACGTCTGAAATAC        CCGGGCAGAGC GGACCA GTTCTGCCCGG         TCCTTCCGGCGCATT  75 455
   Rpal_1514 1596869 .. 1596893 +  -5.6  -4.18018   GGGCCAGCGGATTCC          GTCGACGGTC CGGGC GCTCGTCGGC          TTTTGAGTGGCCCAC  67 158
   Rpal_1515 1597510 .. 1597528 +  -3.7  -3.53012   TGGTTCGAACAGCTT             CAGCGGC TTGTT GCTGCGG             TTTGAACCAACCCCG  51 182
   Rpal_1516 1598288 .. 1598323 +  -2.5  -4.07568   GGTGGCCGGATTGTG   GCCGGCAC-CT-GTCTG ATGC CATGCGAGAGCGCCGGC    TTTTCCCGGACCGCG  57 188
   Rpal_1517 1600414 .. 1600429 +  -4.8  -2.57489   GCCACAATCGCCGTC              TCATAT CTTG ATATGA               TGGGTTACGTTGGTC  43 15
   Rpal_1518 1600890 .. 1600904 +  -4.2  -3.14132   TGCTCGCGAGCCGGA               TTCGCC GGG GACGAA               TTCATGAGCGAGAAA  47 4
   Rpal_1519 1601661 .. 1601677 +  -7.9   -3.1505   GCCGCGCCGGCGCGT              GCCCCCT CGA AGGGCGC              TTCGTCAGGCGTCGT  56 92
   Rpal_1520 1602845 .. 1602858 +  -3.1  -3.73072   CCGCTCCACTTTGCT               CGG-TC TCC GATCCG               TTTGATCGGGAACTT  54 78
   Rpal_1521 NONE
   Rpal_1522 1604098 .. 1604133 + -13.2   -2.7535   TCCAGCCTAGCAGCC    GCTGTCCGGCGGGCCAC TTG GTGCTCCGCCGG-CTGC    TAGTCTGTTGAAGCA  68 31
   Rpal_1531 1617032 .. 1617042 +  -8.2  -3.53563   GAACAATGGAGATGC                 GCCG TGC CGGC                 TTTGGCGGCGCATCT  63 55
   Rpal_1532 NONE
   Rpal_1533 NONE
   Rpal_1534 1622089 .. 1622131 +  -4.1  -4.05004   GAGAGCTGAGGCAAG TC-GCCGCGGCCGTTTCGCAG GAG CTGTGAA-CGTCTGCCGCCGG TTATTGTTGTGGTGG  61 32
   Rpal_1535 1622554 .. 1622577 +  -7.4  -3.08508   CGGATCGCGCCATCC          GTG-GCGTGGC GGA GCAACGCTCAC          TCGTTTTGACCAATG  54 105
   Rpal_1536 1622981 .. 1623012 +  -5.7  -3.68351   CAGACGCATCACGAA      GGCGCG-GTTCGGC CCGGT GCCGCCCGCGCGTC      TTTGCATCCTCCCGA  60 60
   Rpal_1537 1623956 .. 1623972 +  -6.5  -2.78384   GCATCCCGATCAGTT              CGGCAGT CAC GCTGTCG              TCTGGTAGAGCCCGA  49 1
   Rpal_1538 1625189 .. 1625216 + -17.8  -4.44548   ATGCCGAACAACGAA        GGGAGCGCCG-CA ATG TGTCGGCGCTCCC        TTTTGGTTCGATCTG 100 342
   Rpal_1540 NONE
   Rpal_1541 1628001 .. 1628017 +  -4.3  -2.53715   GTCATCGTCTCGGGA              GCTCATC AAT GACGGGC              GTTGATACTCCTGCA  41 14
   Rpal_1542 1629093 .. 1629112 +  -3.5  -3.35522   AGATGTAGGCGATTT            CCGCCAA GCTCAG TTGGCCG             TCTTTGAGCAGGTTC  49 168
   Rpal_1544 1635190 .. 1635229 +  -4.2  -2.75844   CCCGTCTCCGAGCAC  GTCGCGCCCTGAGCATAT CTTG GTATGATTGGGACCCGAC   ATTTGCGGTCCCAAC  42 14
        fumC NONE
   Rpal_1546 NONE
   Rpal_1547 NONE
   Rpal_1548 1640047 .. 1640072 +  -5.3  -4.06179   GCTGCGTTCCGATCA         GCGATCGCTTC CTGC GACGTGAACGC          TTTGTCCGTTTTGGG  63 114
   Rpal_1549 NONE
   Rpal_1550 NONE
   Rpal_1551 1644341 .. 1644353 +  -3.3  -2.97425   GACTTCTACGAACGG                GTGTG AGG CGCGC                TATGTCGATTCTGTC  43 20
   Rpal_1552 NONE
   Rpal_1553 NONE
   Rpal_1554 1650628 .. 1650655 +  -2.6  -3.18199   GCCGGCGCGCGAGAA        GGAG-GCGGCGCT ATG ATCGTCGAACTCC        TTGAGTTCGCCATTC  43 10
   Rpal_1555 NONE
   Rpal_1556 NONE
   Rpal_1557 1653183 .. 1653208 +  -8.9  -2.82516   CACGGTCGCCGGTCA         CGGAGCGCG GCCATGAG CGCGCCCCG          TCTGATCGTCAAAGC  54 10
   Rpal_1558 NONE
   Rpal_1559 NONE
   Rpal_1560 1655871 .. 1655898 +  -5.5  -3.02511   GCAGTGGGTCAAATT        CGCCG-AGGACG TCACC CGGCCTGCGGTG        TATTGGCCGAATGGG  49 79
   Rpal_1564 1668879 .. 1668890 +  -5.8  -3.24188   CGGGATCGCGCTTCG                GGCT CCAA AGCC                 TTGATGCTCATCTGA  51 162
   Rpal_1565 1670044 .. 1670062 +  -4.4  -3.08798   CCCGCCGCACACCTT             TGCGGCCG GAA CGGTCCCG             TCTTGCCTCAACGAT  45 112
   Rpal_1566 1675333 .. 1675344 +  -3.6  -3.66999   GGATTCAAAGGGGGA                GCGG ATGT CTGC                 TTTGGGTCAATAGCT  51 114
   Rpal_1571 NONE
   Rpal_1572 NONE
   Rpal_1573 NONE
   Rpal_1574 1685038 .. 1685064 + -11.4  -3.82946   AGGTCAAGCCTGACC         GGCGCCTGGCGC AGC GCGTCCGGAGCC         TTCTATTTCACGTCC  79 51
   Rpal_1583 NONE
   Rpal_1584 NONE
   Rpal_1585 1693714 .. 1693725 +  -5.8  -2.52464   CTTGACACTGTCTGA                TCGC GACT GCGA                 TCAATTCCACGCGGA  45 36
   Rpal_1586 1695217 .. 1695238 +  -7.2  -4.34402   AGGAGGCCGTCTCGC           GCCTCGCC TTACCC GGCAAGGC            TTTTGATGTAGGCCC  76 431
   Rpal_1595 1708048 .. 1708063 +    -4  -4.77986   TGGCCATCTCGCGCA              TCGATT TGGT GATCGA               TTTTTCGATCTTTGG  77 403
   Rpal_1597 1709721 .. 1709737 +  -4.3  -2.81173   TGTCGTTGTGATCAA              CAACGGT CTC GCCGCTG              TCTCGTGAAGTTAGT  42 1
   Rpal_1598 1711119 .. 1711129 +  -2.4  -3.31144   CCCAAGAGCTGATCT                 GGCC GTG GCCC                 TTCTCGAAGTCGACA  45 29
   Rpal_1599 1711820 .. 1711835 +  -2.6  -2.73364   TGATCGACGCATACT              TCGGAGA GCA TCT-CGA              TGCTTGAGGTCGAAG  39 3
   Rpal_1600 NONE
   Rpal_1601 NONE
   Rpal_1602 1714499 .. 1714515 +  -5.1  -3.05596   CGGCGGCGGGCCGCG              CGCTTCA GCT TGAAGCC              TTCGATCAGGCCGTA  47 101
   Rpal_1607 NONE
   Rpal_1608 1723424 .. 1723449 +  -5.4  -2.72344   GTTTGCAGAGCGGGC         GGGGCGTC CGATGAAGAT GACGCTCC          TCGTTAGCACTGACA  44 12
   Rpal_1609 1724624 .. 1724636 +  -2.6  -4.68512   GTGATATGCCGTCGT                TGCG ACTGG CGCG                TTGTTTTTATTCTCC  72 100
        metN NONE
   Rpal_1611 NONE
   Rpal_1612 1727345 .. 1727363 + -17.4  -5.07652   GTCCGACACGACAAA             GCCCGCGC ATC GCGCGGGC             TTTTCTTTTCGCCAA 100 65
   Rpal_1616 1732259 .. 1732271 +  -4.1  -4.25104   ACGCGGTTGTTGGTC                TTGAG GAT CTCGA                TTTTGGTGCCGGCGC  65 441
   Rpal_1629 1744172 .. 1744210 +  -8.7  -3.17212   TTCGGCTATCGCTGT   CCGCCACGCCTGCGTCG TGAGC TGACGCGGTGGTGTCGG   TTGATCAAGTCATCA  58 1
   Rpal_1630 NONE
   Rpal_1631 NONE
   Rpal_1632 1747843 .. 1747862 +   -15  -3.29947   CGCCTGATCAAACGG            CGCCGCGA GAGA TCGCGGCG             TTCCTCTGCTGGATG  82 34
   Rpal_1633 NONE
   Rpal_1634 NONE
   Rpal_1635 NONE
   Rpal_1636 NONE
   Rpal_1637 1755822 .. 1755838 + -10.1  -3.08679   CGCCGCGCTGTATCC              GGCGGGA TAA TCCTGCC              TATTGGGTCAGGAAC  62 16
   Rpal_1639 NONE
   Rpal_1640 1757048 .. 1757058 +  -3.2  -2.79823   AGCACAAAGTTGCGG                 CGAT CCG GTCG                 ATTAGTTTTCCGACG  40 60
   Rpal_1641 1757568 .. 1757582 +  -2.7  -3.11222   TGGCCGCCGAACGAC               GCCGG CTGAT CCGAC               CTTTTCGCATTCGCA  43 17
   Rpal_1642 1758966 .. 1758995 + -20.7  -3.75153   GGCCGAATAGGCCTC       CCGGCGGCCACGG CAAT CCGTGGCCGCCGC        TTTCCATTGACGGAG 100 31
   Rpal_1643 1759848 .. 1759879 + -16.6  -2.92192   GCCTCTCTTCAGTCA      TTCCGGG-GCGCCGC GCA GCGGCGAACCCGGAA      TCTCCTTCGATAACA  83 44
   Rpal_1644 1761871 .. 1761901 +  -8.4   -3.4582   CATTTATCGCAATCT      GATGGGGTGA-CC GGGCGA GGCTCACTCCATC       TCTTTCATCACCTGC  63 16
   Rpal_1648 1767688 .. 1767708 +  -6.7  -3.06183   GCGGATCGCCTCGAT            GGTGCCGTC CTC GGCGACGCC            TTCGATCACAATGCG  51 328
   Rpal_1650 1770647 .. 1770657 +  -6.8  -3.54424   AGGCCGGGCTTCGGC                 GGCA CGG TGCC                 TTTCAGCGCATAGAG  58 298
   Rpal_1663 1783421 .. 1783446 + -14.7  -2.65264   GTTGAGTCGATCGGC         TGTCCCGGCTG GCGA CGGCCGGGACG          TCGTCTGAATCATGA  74 36
   Rpal_1664 NONE
   Rpal_1665 NONE
   Rpal_1666 1786103 .. 1786116 +  -2.3  -2.78384   CGAAGCCATCCGGCT               GCTGC CCGA GCACC                TGTGATGAACCAGAA  39 7
   Rpal_1667 1786980 .. 1786994 +    -7  -2.70932   AACTGCTGTAAAAGC               CGCTGG AAC CCTGCG               TCGTTAACGACACCG  49 30
   Rpal_1668 1787495 .. 1787510 +  -3.9  -3.59627   GCTTCGCTCGTTTTG              GCGCT TGCCCC GGCGC               TTTCCAAAATTTAAT  53 46
   Rpal_1669 1788684 .. 1788710 +  -4.3  -3.29043   TATTCCGGGATCGGC        GCCGCCTGCGGC CACA GCCG-ATGCAGC         TTGTCGAGCAGGATT  49 259
   Rpal_1671 1791776 .. 1791827 +  -8.3  -3.78953   ACTCCTTCCTTGCGA GCGGAGCGAAGCAATCCAGACCTC CGTGTGC GACG-CTGGATTGCTTCG-T-CGC TTTGCTCCTCGCAAT  69 103
   Rpal_1672 1792604 .. 1792635 +   -13  -4.57073   TGCGAGCGAAGCGAA      GCAATCCAGCTCCG TGCC CTGAGCCGGATTGC       TTTTTCGGCAGCGTC 100 61
   Rpal_1673 NONE
   Rpal_1674 1794369 .. 1794407 + -12.5  -3.53224   AGCACCGCCTTGGTG  TGC-TCGCCGAG-CCGCGC CAC GCGCGGGTTCGGCGACGGA  TTTGCCGCCGACATC  74 96
   Rpal_1678 NONE
   Rpal_1679 1799364 .. 1799390 + -10.9   -3.6053   GAAGCTGTCGTGGCT        G-GACCGGGATC CAAG GGTCCCGGTCGC         TTGCTTTGTAGCCCG  73 54
   Rpal_1680 NONE
   Rpal_1681 NONE
   Rpal_1682 1801957 .. 1801994 + -15.5  -4.27316   CCGGCCCTACAGGTC   CCATGACGCCGCGGGCA GTAA TGTCCGCGGCGCCGTGC    TTTTGGGTTGCAAGA 100 46
   Rpal_1683 1803630 .. 1803674 + -14.2  -3.51234   GTAGCGGCGTGTCTT CGAGCGCCTGCGGGGGGGCG GCGCA CGTGGTCTTGCAGGCGCTCG TCTTTAACTTTCGAT  83 37
   Rpal_1684 1805155 .. 1805186 +  -6.4  -5.24129   CACGGGTTCGGCGGA      CGCGGTGCGATAGGC GCC GCCCGATGC-CCGCG      TTTTTTATCGACCGG  88 13
   Rpal_1685 1808336 .. 1808352 +  -2.1  -3.14463   GCAGTTGCCGCACGA              TCCAGCC TGA GCCGGGA              TTACTGGCGCAAATT  43 16
   Rpal_1686 1808959 .. 1808984 + -20.5    -4.371   AGTCTAAACGTCGAA         GGCCCCGGTTC TCAA GAACCGGGGCC          TTTTGCTGTCGTGAG 100 49
   Rpal_1692 NONE
   Rpal_1693 NONE
        bchD 1818469 .. 1818492 +    -6  -4.08823   TGACGGCCGCGACCC          GGCAGGAC TGAGCGGC GTCCTGTC           TTTCCTTGTGTTGCT  65 15
   Rpal_1697 1821747 .. 1821787 + -11.7  -2.54193   AAGGCCGGGACCTGA  GGCTGCCGCGATGTCCGAC CTG GTCTGGAGTCGCGACGGCC  TGGATTGGCCTCATC  65 26
   Rpal_1698 NONE
   Rpal_1699 NONE
   Rpal_1700 1825332 .. 1825362 + -20.4  -2.72839   TAGTTGCTGCCTGCT       GCGTCGGCGTACGC GTG GCGCGCGCCGACGC       TCGTTGCCCATGGTT  91 38
   Rpal_1701 1826652 .. 1826666 + -11.4  -3.64703   GAGCCGAACAGCGCT               TCGCGG AAT CCGCGA               TTTCCGTACGCGCCC  75 144
   Rpal_1703 NONE
   Rpal_1704 1828265 .. 1828281 +  -3.6  -3.73068   GCGGCAACAGTTGCG              GCGGGG TGAAT TCCTGC              TTGTTGCCTTCGGCG  54 288
   Rpal_1707 NONE
   Rpal_1708 1832681 .. 1832710 +  -2.9  -3.29739   GCCGCTGGTTGCTTC       CGTAATTACCG CATCCAAA CGGTAGTTGTG        TTAATCTGGCTTGAC  46 1
   Rpal_1709 NONE
   Rpal_1710 NONE
   Rpal_1711 NONE
   Rpal_1712 NONE
   Rpal_1713 1838093 .. 1838132 +  -5.7  -4.07568   CATGGGAATGTAATT CGG--GAATTTCGTCCGGC CTCC GCCGGACGGAAGGCTGCCG  TTTTGGAGACGAAAC  65 28
   Rpal_1714 NONE
   Rpal_1715 1838628 .. 1838643 +  -2.4  -2.79915   TCGCTGCCGTTCACT              CCGCCG AGCA TGCCGG               TCTAATGGCGTGACT  39 5
   Rpal_1716 NONE
   Rpal_1717 1840596 .. 1840631 + -17.6  -3.33037   TCTGAGCGAATGATG    CGCGCGCCTGATGGTA TAAA TCCAATCAGGCGCGCG     TTGCTGCTTTCGGCT  91 57
   Rpal_1718 NONE
   Rpal_1719 NONE
   Rpal_1720 NONE
   Rpal_1721 NONE
   Rpal_1722 1846209 .. 1846221 +  -3.3  -2.62735   GCGGTCGCATCGAGA                ACTGC CAT GCAGA                TGATGTCCGAACTGT  39 56
   Rpal_1723 1846543 .. 1846583 + -13.4  -4.09864   CAGAGAGCTTCCCAA ACACAAAGGGCTTCGGTTC TTGC GAACCGAAGCCCTC-GTGA  TTTTCACGCGTCAGT  90 81
   Rpal_1725 NONE
   Rpal_1726 1851356 .. 1851371 +  -8.2  -3.06796   AGGCGTGCGCGATCA              GGCGGC TGCC GTCGCC               TTCGCTCACCTCCGC  55 438
   Rpal_1729 NONE
   Rpal_1730 NONE
   Rpal_1731 NONE
        bchH NONE
        chlL NONE
   Rpal_1734 NONE
   Rpal_1735 NONE
   Rpal_1736 NONE
   Rpal_1737 NONE
   Rpal_1738 NONE
   Rpal_1739 NONE
   Rpal_1740 NONE
   Rpal_1741 NONE
   Rpal_1742 1868877 .. 1868900 +   -21  -4.32857   TACCCGAGCAAGACT          GGCGCGCGCC CTCC GGCGCGCGCC           TTTGTCTTTGAAGGG 100 55
   Rpal_1744 1871420 .. 1871436 +  -3.5  -3.14211   CTCTTGGACCAGAAC              AGCGGCC TTC GGCCGGA              TTGATCAGCGCGACT  44 5
   Rpal_1745 NONE
   Rpal_1746 1875192 .. 1875209 +  -4.7  -3.53012   TCCGACCATCCAGCC             GCCTCGG CCGG CCAGGGC              TTTCAAGGAGGACGA  53 192
        rbcL NONE
   Rpal_1748 NONE
   Rpal_1749 1878424 .. 1878434 +  -2.4   -4.2717   GTTGGAATGAAAACT                 CACC ACG GGGG                 TTTTGATGACGTCGT  62 401
   Rpal_1751 1880270 .. 1880280 +  -8.2  -3.53012   GTAGCCCTTTAACTT                 CGCC GGA GGCG                 TTTCCCCAAGCCGCA  63 29
   Rpal_1752 NONE
   Rpal_1753 NONE
   Rpal_1754 NONE
   Rpal_1755 1885093 .. 1885147 + -22.3  -3.14463   CTCGGCGTCGCGTCC TGA-CGCGG-GGCCGGTGCGGCAAGGT TTC GTCTCGCCGCACCGGCCGTCGCGATCA TTGCTGCAGCGCCTT 100 23
   Rpal_1759 1890514 .. 1890556 + -12.1  -3.03441   TAAACCTCGCCATCG T-CATTCCGGG-ATGCGCCCC ATC GGGGCGCAGGCCCGGAATCCA TATTCACAGGTGGTG  68 38
   Rpal_1760 NONE
   Rpal_1761 NONE
   Rpal_1762 NONE
   Rpal_1763 1895704 .. 1895714 +  -5.4  -3.04322   GCGGCTGCGGATGCT                 TCTC CTC GAGA                 TATTCGCAGATTGCG  47 496
   Rpal_1765 1897135 .. 1897163 + -20.3  -4.59424   TTCTTGAAACTTTAA        CGGCGCCGGCTAT GAG ACAGCCGGCGCCG        TTTTGATTTGGCTTT 100 54
   Rpal_1769 1903907 .. 1903962 + -12.6  -3.53012   ATTGAGTTCATCGAT CGCCGCGCCGATGGCC-GCGGCAGCGC GAACG GCGTTACGGCAGGCC-TC-GCGCGGTG TTTCGGCAAGCCCGA  74 404
   Rpal_1773 1909024 .. 1909054 +  -7.4  -3.63627   TACGTCGCGGTGATG       GACCTGGTGCTGGC GTA GCGGGCGCCGGATC       TTTCCGATATGAACG  62 8
   Rpal_1774 1910042 .. 1910066 + -13.6  -4.02817   GCGTCTGTTATGCGA          TCGCACCGTC GTCCG GGCGGTGCGA          TTCTTGTTATCGGCA  90 167
   Rpal_1775 1910396 .. 1910423 +    -9  -3.77464   AAAGGTCAGGCTGCC        CGCACGATCTCG CGGA CGTGGTCGAGCG         TTTGCTCGATCATGT  71 39
   Rpal_1782 1917000 .. 1917016 +  -2.9  -5.00616   GCTAAGTTCTCTAAC              TGCTGCA GTT TGCGTCA              TTTTTTGGGGAGCGG  78 330
   Rpal_1783 1917985 .. 1917999 +  -3.5  -2.78523   AGCAAGGGAAATAAT               GATGC TCGCT GCGTC               TGAGTTTGTTGTCGG  40 27
   Rpal_1784 1918459 .. 1918476 +  -2.6  -2.70932   CTGATCGAAGCCCGC             GCCTAC AAGCAG GTCGGC              TGCTTCGAAGCCGGC  39 37
   Rpal_1786 NONE
   Rpal_1789 1923629 .. 1923679 + -11.7  -3.06315   GCCTGACGGCGGACG GCCTTCGTCCGAAGC-CCGGCGGC TTTG GCCGCCGGCGCCTGGTACGATAGC TATTCGAGCTGTTGC  68 35
   Rpal_1792 1925622 .. 1925651 + -14.3  -3.48738   ACGCCTGAGCCCGAC       GCACCTGCGTCGCG GCG CGCGACGC-GCTGC       TGTTTACTCGTAGTC  83 33
   Rpal_1796 1929973 .. 1929996 +  -3.9  -3.21276   CTGTTCACCGACAAG         GGCATCAAGGC CGCC GCCT-GA-GCC          TCTTCTCCCGCCAGA  47 5
   Rpal_1797 NONE
   Rpal_1798 1932113 .. 1932126 +  -3.7  -3.61398   TGAACGAGCGCATCG               CGCCG TAGC CGCCG                TTGTTCAGCACCACC  51 266
   Rpal_1804 1939950 .. 1939976 + -16.6  -3.63627   GAGGCGTCACGCCTT         TCAAGGGCGCCA TCT TGGCGCCCTTGC         TTTGACATCTGCGGC  91 39
   Rpal_1805 1941241 .. 1941279 + -12.5  -3.37796   TTGCCGAGGTTGCGG  TCGCGGACGAGGTGGACG GTGA CGTTGGCCTCGTCCG-GA   TTGTCGGTCATCGCG  73 440
   Rpal_1808 1944028 .. 1944046 + -17.4  -2.56046   GCAGATGTAATGCCA             CGGGCGGC CCT GCCGCCCG             TCCGTTCCCGTTTCG  83 31
   Rpal_1809 1944598 .. 1944626 +  -5.9   -4.4009   CTAACGCCCCCCGTA        GGATGGGTTGAGC GCA GCGAAACCCATCG        TTTTGTCGGATGCAG  74 57
   Rpal_1814 1949032 .. 1949044 +  -9.1  -2.52464   TAGCGACCGTCAGGG                TCGCC CCA GGCGA                TGAATTCGGGCACGA  56 50
   Rpal_1816 1950623 .. 1950642 +  -8.6  -2.66435   ACACCATGGTGGTAA            CTGCGTCCT GAG AGG-CGCAG            TGATATAGTGAACAT  53 15
   Rpal_1817 NONE
   Rpal_1818 NONE
   Rpal_1819 1954554 .. 1954585 +  -5.9  -4.07687   CGAAGTTTCAGGAAG     TCGGCCTGATCTGAC GGGG GTCGGA-C-GGCCGG      TTTTGGCGCCGCGGT  65 12
   Rpal_1820 NONE
   Rpal_1821 1956837 .. 1956869 +  -9.8  -2.54896   GCGTCACGCGTCACA     TTCCAGGCTCGCGCC GATC GGCGCGTACC-GGAA      TGACTTGGGTGAGGG  59 166
        fliI 1959462 .. 1959481 +    -5  -3.30124   TGACCATCCGGCGAT            GTCCCGCGT TGA AC-TGGGAC            TTCTGGGGAGTACGA  50 96
   Rpal_1824 1959955 .. 1959975 + -16.1  -4.07647   CTTTGCGTCGAAACA            GCCCGGGCC CTC GGTCCGGGC            TTTCGTTTGCGGTAT 100 51
   Rpal_1825 NONE
   Rpal_1826 1961686 .. 1961704 +  -9.5  -4.57516   CGCACAAAAGAAAAA             CGCCCGT GGGGA GCGGGCG             TTTTCCTTTGGGTCT  91 111
   Rpal_1829 1966000 .. 1966029 + -16.4  -3.01712   GCTCACCAGAACGAA       AGAGCCGCGCGG CTGACA CCGCGCGGCTCG        TGTTCACAAGGCGAG  84 56
   Rpal_1831 1969775 .. 1969785 +  -6.8  -4.02468   CCTGCGACGCCCGCC                 GCAG ATG CTGC                 TTTGTGGGTATTTTT  67 211
   Rpal_1832 1971509 .. 1971532 +  -3.7  -2.90615   AGACCGAGGCGTCTT          GGCCGCTCC TATGCC GGATCGGAC           TGCTTTCGCGCGGCT  44 50
   Rpal_1834 1972564 .. 1972585 +  -7.1  -3.38072   CCGAACCTGCAGCGC           GCGCCGCCG CATC CTGCGCCGC            TTCCTCTTCCATCGA  56 42
   Rpal_1839 1976350 .. 1976378 +  -2.3   -2.8085   GGATCAGCGCATCCG       GGCGGTGCTGCG GTGAAG CGCTG-GCTGCC        GTTTGAGTGGATTGC  39 10
   Rpal_1840 NONE
   Rpal_1841 1978753 .. 1978765 +  -3.3  -3.76224   CGTCCTGGGCATATT                CCATC CCG GCTGG                TTTGATCACTGCACC  56 517
   Rpal_1843 1981118 .. 1981133 +    -6  -2.64794   ACGGCCGGTCAAGTT              CACCGC GTCT GCGGCG               TGCTATGGGCTTCGG  46 139
   Rpal_1845 NONE
   Rpal_1846 NONE
   Rpal_1847 1985603 .. 1985649 + -14.5  -2.79518   TGCAGCGCTGAGCAT CAAGTGCAGGTTGGCGGTCCACC CGT GG-GGATCGCCAACCTGC-CGCG CTTTGAGAATTTTAC  75 30
   Rpal_1851 1989622 .. 1989644 +  -9.8  -2.78935   CTTGATCCCAGCCTC           GCCGCGCT CCGACAC GGCGCGGC           TCTCGTCCAGGATGT  57 269
   Rpal_1853 1991283 .. 1991307 +  -3.4  -4.08767   GCGGGGCGGCTCTGC         G-GCCGGCGGG CTTG CCCGAAGGCAC          TTTTGGGGGCATAGC  58 115
   Rpal_1854 1992017 .. 1992031 +  -8.6  -3.35371   TTCGAGCGCGGCCGG               GAACAG CAG CTGTTC               TTCCTTCAGCATGTG  60 278
   Rpal_1857 1995946 .. 1995979 +  -5.9  -3.75153   AGGACACCGGATCAT     TGCT-GCCGCAGGCGT AGC GCGGCTCCGGCGAGCG     TTTGCGTTCGGCACG  59 160
   Rpal_1866 NONE
   Rpal_1867 2005719 .. 2005741 + -10.4   -2.5294   TCGATCCGATCTCGG           CGTGGCGGCG CAG CGCCGACTCG           ATCTTGTCGCGGATG  56 232
   Rpal_1869 2009016 .. 2009042 +  -9.4  -3.09492   CAACCACCCAAGCAC         CGCAATGCGCCA TCC TGTCGCATTGCC         TCTTCGCATTAACCG  60 103
   Rpal_1870 2010002 .. 2010040 +  -6.7  -3.73402   TGTTGGTTGCCGCCT  TCGTGTTCGATCCCGGTG ATTG CAC-GAGGTCGATCACGG   TTTGATCCGGAGTCT  62 408
   Rpal_1871 2012426 .. 2012437 +  -5.8  -2.79183   CTAAGCGCGGTCCGC                CTGC CGGC GCAG                 TCTGGTGCGACTGGC  46 37
   Rpal_1872 NONE
   Rpal_1873 NONE
   Rpal_1874 NONE
   Rpal_1875 2017219 .. 2017229 +  -3.2  -2.57463   ATTTTCCGAAGGTGA                 CGAG GGT CTTG                 GTTGTGCAAACGCTT  39 86
   Rpal_1876 2018717 .. 2018733 +  -6.5  -3.85092   GCCGGCACGCGGCGC              GCGGC GCTGAAG GCCGC              TTTGATCTGCCTGGT  62 105
   Rpal_1878 2022462 .. 2022488 + -11.4  -4.56133   GCGGCGCCGAATTCA         TCCGGCGTGCCG AAG CGTCCCGCCGGG         TTTTCATTCTTCCGC 100 179
   Rpal_1880 2024407 .. 2024437 +  -3.3  -3.61654   AATTGTATCTTGCTT      GCAA-CGACTGAAA CTTT TTACCGTCGATTGC       TTTCGCCTCGCTCTA  51 421
   Rpal_1881 2029262 .. 2029313 +  -2.4  -3.36273   TCAGTTCGCCCGCAT C-TCCTCGCGGATCATG-TCGGCGG CTTTC TCGCCGATCATGATG-GTGGGGGCG TTGGTGTTGCCGCCG  45 193
   Rpal_1884 NONE
   Rpal_1885 2033722 .. 2033741 +  -3.4  -3.54543   CAGCGACTGACCTCG            GCCGTTCG CAAC CGATCGGG             TTTGCGGACGTAACT  51 31
   Rpal_1886 2035052 .. 2035065 +  -8.1  -3.39327   TGCTCTCATAGGTCT               TGCCG TCGT CGGCA                TTGTAGATGTGGCCG  59 126
   Rpal_1889 2038533 .. 2038550 +  -2.6   -4.4017   GTTAGAATAGATATT             GGGTCC GGCCGG GGAACC              TTTTATAAGGGTTCC  65 155
   Rpal_1890 2039228 .. 2039258 +   -22  -4.13767   AGCTCGCACAGAAGC       GAAAAGGCGGTCGC GGC GCGGCCGCCTTTTC       TTTTGGCATCGAGCC 100 52
   Rpal_1891 2040032 .. 2040047 +    -6  -3.86015   GCCGGGTTAGCGTCC              GGCGGC TGAG GCCGCA               TTTGTCGGCCCAGTG  62 329
   Rpal_1894 2042084 .. 2042107 +  -9.6  -3.62046   GCGGGCGGTATGTTG          CCGATGGGCTC AAG GAGCCT-TCGG          TTGTTGAGCCAGTCG  68 398
   Rpal_1899 2045862 .. 2045895 +  -8.9  -3.19192   GAGCGAAGCGACAAA     GCAATCCAGCGCT GTGCCCGG GGCTCTGGATTGC      TTCGCTTCGCTCGCA  58 78
   Rpal_1904 2052875 .. 2052896 + -11.5  -4.07568   ACCTCGAACCGGATC           GGTAGCGGC CCAA GCCGCGACC            TTTTGCCGGCCACAA  82 294
   Rpal_1905 2053831 .. 2053862 + -15.3  -3.12327   CGCTAAACGCGCACT      TCTCACCCTTTCC GTTTCG GGAGAGGGTGAGA       TCTTCGATCTCCGCC  83 35
   Rpal_1906 NONE
   Rpal_1907 2056783 .. 2056800 +  -9.9  -2.71731   CTGCAGTGAGACATG             CGAACGA CCCA TCGTTCG              TCATTCCGGGATGCG  60 32
   Rpal_1908 2058151 .. 2058166 + -11.8  -3.31144   CTCATGGTTTGAGAC              GCGCGC GAGA GCGCGC               TTCTCACCATGAGGC  72 106
   Rpal_1909 NONE
   Rpal_1910 2060933 .. 2060946 +  -3.1  -3.66356   TTATTCGATTGCCGG               CGCCAC AGT GTG-CG               TTTCAGATTCCGGGT  51 109
   Rpal_1911 2061733 .. 2061763 + -13.3  -2.86343   CTTCTCAACGAGTCA      TTCCGGG-GCGCGC GTCA GCGCGAACCCGGAA       TCTGATGCTTGCACT  70 44
   Rpal_1913 NONE
   Rpal_1914 2064627 .. 2064640 +  -3.1  -2.54896   CATATGAAGGCCGTA               CGCTGG CAG CCA-CG               TGCATTCGGTCGCGA  39 109
   Rpal_1915 2065208 .. 2065229 +  -4.4  -4.13767   CCGTGAGACGTTAGC           CCGGTC CGAGTAGTAC GACCGG            TTTTGCAATCCGCCG  63 35
   Rpal_1916 2067757 .. 2067792 +  -3.9  -3.57309   AGTTCGCGCATTGAT    CTCG-TGATGGCCGGG TGTCT CCCGGCCAGCAGCCAC    TTTCCGCGACTTTTG  53 100
   Rpal_1918 2069254 .. 2069274 +  -4.6  -3.87815   CAGCTTCAATCGGGG            GAAGGGCG TTCAT CGCCTCTC            TTTATCCCGCTCCGG  58 352
   Rpal_1921 NONE
   Rpal_1922 2072058 .. 2072075 +  -7.7  -3.87815   TTCCTTGGTGAGCGA             GGTGAAC ACCA GTTCGCC              TTTCTCGCCATCCGG  66 467
   Rpal_1925 NONE
   Rpal_1926 2076860 .. 2076875 +    -4  -3.53012   GCCCGCATGGTTGAC              CCGCGTA TTA TAC-CGG              TTTCCAGACAGGAAC  51 106
   Rpal_1927 2078093 .. 2078104 +  -7.2  -3.86346   TTGCCCCCAGGTTCG                CCGG TAGT CCGG                 TTTCTGGCGCGGTGC  68 360
   Rpal_1935 2088029 .. 2088056 +    -9  -2.66316   CCGCGCACATCGGCG        CCGGCTGCGACC GCCT GGTCGAGGGCGG         TGATGTAGTCGCGCA  54 219
   Rpal_1942 2096518 .. 2096540 +  -7.6  -3.74693   CCACGCGAGACGGGA           CGGCGGTTCT GGG AGGGCCGCGG           TTTGGTGACCTGCCG  63 291
   Rpal_1947 NONE
   Rpal_1948 2102740 .. 2102761 + -17.3  -4.03234   CGCAGGAAGTTAAAA           CGGGCGCAC CATG GTGCGCCCG            TTTGTGTGAGGGGCG 100 41
   Rpal_1949 NONE
   Rpal_1950 NONE
   Rpal_1951 NONE
   Rpal_1952 2106273 .. 2106293 +  -2.5  -3.04144   GCGCTCGCAATGACG            GATGCAGAG ATT CATTGTATC            TCTTGGGCGTCCAAG  41 163
   Rpal_1953 2107205 .. 2107228 + -10.3  -3.13164   ACCCAGCGGTTTGTC          GCGTCGCCGC CGGCT GCG-CGACGC          TTGGCTAATTGCGCG  64 122
   Rpal_1954 NONE
   Rpal_1955 2111773 .. 2111820 + -15.7  -3.06183   GGGGAGCCGAAGGCG ACGAAGCAATCCAGGAGCTCCG TGCAC CGCGGC-CCTGGATTGCTTCGC TTCGCTCGCAATGAC  81 91
   Rpal_1958 NONE
   Rpal_1959 NONE
   Rpal_1960 2116579 .. 2116589 +  -4.6  -2.94924   CGTTGCAGCGATTAG                 CGCG GGG CGTG                 GTTTCTCAATCGCCG  46 26
   Rpal_1963 2119268 .. 2119317 + -14.4  -3.17229   AGACCGCTGCCTCTC GC-CGGTCATTCCGGG-GCACGCGC GAA GCGCGTGAACCCGGAATC-CCGAGC TGTTGATCGTCGGGT  80 45
   Rpal_1966 2123317 .. 2123351 + -21.4  -3.31263   AATACATGACTTATC     GAGGGGACGCCGCGCG CAT CGCGCGGCGTCTTCGC     TTATAAGCGTCGCAT 100 53
   Rpal_1967 2125218 .. 2125235 +  -9.9  -2.64616   CAAGCTCGCGGCCGT             TCATGCC GCCG GGCATGA              TGATGTCGGTGAGCA  57 261
   Rpal_1971 2131020 .. 2131046 + -15.2   -2.6891   GCGGTGCACAAAATA         CTCCAGGATGCC GGT GGTGTCCTGGAG         TGCTGTCATGTCGTC  78 92
   Rpal_1972 2133903 .. 2133922 +  -4.2  -3.17075   TCTATGCTCATTCAG            CCGGTG GAAAGACG CGCCGG             TTAGATTGGCAGCGC  47 64
   Rpal_1973 2134618 .. 2134641 +  -5.3  -4.42653   GCCGTTATCCATCCG          TCTGCGGCA TCATTT TGTTGCAGA           TTTTATGCATCAAAT  71 312
   Rpal_1974 NONE
   Rpal_1975 2135960 .. 2135978 +  -4.6  -3.07816   CGCCGTATCGGGCTA             CTACTC GGGGGAA GAGTAG             TTCGCTGCCTGCCGA  47 176
   Rpal_1976 2137574 .. 2137622 + -19.8   -3.7282   CCCCCTCCAAGGTGC TTCACCCGACGGAAAAGCCCGCC GCGA GGCGGGCTTTTCTGT-GCGTGGA TTCTTGGTCGAGTCA 100 43
   Rpal_1980 NONE
   Rpal_1981 2142826 .. 2142875 + -25.9  -3.28924   CGCGCCATCACCACC GCTCGTCATTCCGGG-GCACGCGC GAA GCGCGTGAACCCGGAATGACGAGG TTGTGACGCAAGCTG 100 53
   Rpal_1984 2146128 .. 2146161 + -17.5  -2.87211   GCTTCTCCGCGGTCA     TTCCGGG-ATGCGCGC ATC GCGCGCAGACCCGGAA     TCTCTGACCCAAGAT  87 41
   Rpal_1985 NONE
   Rpal_1986 2148149 .. 2148176 +  -3.2  -2.70932   ATGATCGGGTAGGCG        CGGGGGGACGTT CACA ATCAACCTCCCG         TCATTGCGAGGAGCG  40 29
   Rpal_1987 2148980 .. 2148992 +  -4.7  -2.71712   ACCAGCACCCGAAAG                CCGGC TGA GCCGC                ATTTCGAGCGCCACC  44 232
   Rpal_1988 NONE
   Rpal_1989 2151973 .. 2151999 +  -4.2  -2.78384   GCGGGGCGAGGGAGC         GCGCTGCCGGCG GCG CGACCACAGTGC         TCTCATAGGAGAAAC  42 214
   Rpal_1990 NONE
   Rpal_1991 2153719 .. 2153741 + -16.3  -4.72272   CCTGCGCCTTGCGAA           GCCGGCCTC CCCGT GAGGCCGGC           TTTTTGCTGAGCGCA 100 65
   Rpal_1992 2154907 .. 2154925 +  -6.6  -3.40403   GGCGCGGTCGGCGAT             CGCCAGTG CCG CCTTGGCG             TTCTGCTCCACCAGC  57 83
   Rpal_1996 2159439 .. 2159472 + -10.9  -2.62983   ATGATCTCGGCCTTG     GCGACGCCGGCGTGC AGCA GCGTGTCGACGTTGC      TGATATCGCCGTAGA  59 460
   Rpal_1998 2161537 .. 2161561 +  -2.6  -2.93335   GCCGGACCACGCCGT          CGACCGGTAG CCCTA CACCCGGACG          CTTCTCTTTATACCG  40 58
   Rpal_1999 2163486 .. 2163507 + -10.1  -4.07568   TTGGTCAGTGTCGGG           CCGGTGATC AGCA GGTCGCCGG            TTTTGGCGAAGAAGC  78 313
   Rpal_2004 2170211 .. 2170243 + -14.2  -2.53876   CGCCGCCACGTGTCG     TCGCCGCCAAGCGCG ACAA CGCGC-TGGTGGTGA      TCGCTTGCGATGCGC  74 52
   Rpal_2005 2171734 .. 2171775 + -14.5  -3.06183   GAGGAAGCGAAGCCG ACGAAGCAATCCAGTCCCG CGTA CTGAACTGGATTGCTTCGC  TTCGCTCGCAATGAC  78 86
       dnaE2 2175812 .. 2175825 +  -6.7  -2.55074   GGCGTGTCGGGCGGA               GCGAT CAGC ATCGC                TCGCTTGCCCTTGGC  47 425
   Rpal_2008 2177433 .. 2177460 +  -3.2  -2.70936   CGGCCCCGATAGGGC        CGGGAGGAAGGC GTAT GCAATCTCCCCG         TGATCTGCTTGCTGA  40 60
   Rpal_2009 2178955 .. 2178970 +  -3.2   -4.7416   GCGCTGGTGTCATCA              TTCGCT GCTA AGCGCA               TTTTTGCCGTTTTCA  73 136
   Rpal_2010 2180345 .. 2180373 +  -6.6  -4.02817   GCGGTCCCGCCGCCC        GGCGCTCCCG CCTTCAGCT CGCGGGCGCC        TTGTTCTTCTGAACG  67 68
   Rpal_2011 2183706 .. 2183731 +    -6  -3.06492   TCCCGATGACAGAAC         TGTCGCGGCG ATACAC CGCAGCGACC          TCTTGACCTGAGTCA  49 150
   Rpal_2012 2184508 .. 2184538 + -10.4  -3.31144   GCGCTCACCGCGATC       TTGGCGCCTTCGTT CGA AACCCAGGCGCCGA       TTGTGGCAGTGCGGG  63 435
   Rpal_2016 NONE
   Rpal_2017 2188952 .. 2189007 +  -3.6  -2.82516   GGCGGGTTTTCACGA CGGCGGGCGAGGGCATTGGTGGCGGC TTGG GTCGCCGCCTACGCGCTCGTGCTCAA TGTCATACTCGCCAG  40 124
   Rpal_2018 2189289 .. 2189303 +  -3.4  -3.32963   CTCCTGCTCATCAGC               CCCGTG GCC CGCCGG               TTCTGACCTGACGAT  46 0
   Rpal_2019 2191612 .. 2191651 +  -9.3  -2.57244   GTGGTAGGTGGAACG CAGTCGCCG-GCCGCTCAGG CGG CC-G-GCGGTGCGGCGACGG TGGATTGCTGCATGC  56 34
   Rpal_2022 NONE
   Rpal_2023 2195960 .. 2195989 + -17.9  -4.20136   GCTGATATGGCTTTT       GACCCGCCCGG TTGTCCCC CCGGGCGGGTC        TTTCGTTTTCCGGCT 100 279
   Rpal_2024 2197046 .. 2197093 +  -7.7  -3.74872   AAGATGAAATCAGCA GGGGGATTCGCGGCGACGTGCG CGTCC CTGACGT-GCTGCGGATCTCTC TTTCATGCGCTGAGT  65 361
   Rpal_2025 2199245 .. 2199278 +   -13  -3.15249   AAATAACTTGCAACT     AACGTGCGCCCGGG CCTTGT CCCGGGCGCGCGCG      TTGATGCGACCTGTG  73 56
   Rpal_2026 2199867 .. 2199916 +  -8.4  -3.70149   CCGGACCTTGCGTAA CCGCACCGCTCGCTGATCGCGCG CTAGC CGCGCGA-CGGTGTGCCTTGCCG TTTCGCTGCTGTCCC  69 26
   Rpal_2027 2202416 .. 2202445 +  -5.1  -4.26076   GGGAGAATAATCGAC       TACAATCAGGC AGGTGTTG GCGTGATTGTA        TTTTCATCCGGGTGG  68 112
   Rpal_2028 2203240 .. 2203252 +  -4.7  -5.01497   GCAGCCTTCAGGACG                CGCCG ACG CGGAG                TTTTTCTCTGCTCAT  83 325
   Rpal_2047 2218532 .. 2218553 + -14.5  -2.62616   GGCCATGCGCGGCGA           CGACGCGTA TTGA TACGCGTCG            TCCTCTAACGCATGG  74 44
   Rpal_2048 2220262 .. 2220295 + -15.4  -2.72463   ATTGCGCGAGGCCTG     CTCCGGATTTGCGC CACTGC GCGCAAATCCGGAA      TCCTTCCAAATCGGT  78 70
   Rpal_2049 2222911 .. 2222943 +  -3.2  -3.01712   CTTCGTGCCGGGCAT      CCACGTGTCGGAGG TCGAT CGTCCGCCACGCGA      TCTTCAAACCAACAA  43 81
   Rpal_2050 NONE
   Rpal_2051 NONE
   Rpal_2052 NONE
   Rpal_2053 2226165 .. 2226185 +  -6.1  -3.90744   GGCCCTGCTTCTCGA            TCGCGGC CGAAATT GTCGCGA            TTGTTTCGGAGACGC  64 289
   Rpal_2056 2230455 .. 2230481 + -17.3  -3.53012   GGACAATTTGACGAA        CGCGCC-CGCGG CCTG CCGCGCGGCGCG         TTTCGAACCGACGAC  93 159
   Rpal_2057 2231368 .. 2231401 +  -5.9  -3.68073   ATCGGCGAGACTGAG     TTCGGTGATCGGGCCG ACG CGGCC-GATCCCGGCA     TTGTTGACTAGGATG  59 468
   Rpal_2059 NONE
   Rpal_2060 2233152 .. 2233185 +   -11  -3.16881   AGCCGATCGCGATCA     GGTCGACG-CGGCGA GGGTG TCGCGGGCGTCGGCC     TTGATCCGCTCGATC  67 58
   Rpal_2063 NONE
   Rpal_2064 2237142 .. 2237175 +  -5.3  -3.95852   GACTAGGCAATGAGA     GCGACAGCTG-TTGCT TGA AGAAAATTGCTGTCGC     TTTCCTTCCTCAGGT  60 35
   Rpal_2065 2237695 .. 2237722 +  -8.5  -4.25283   CCGTGCGATGCGATC       CCGTGGCGTCATC CGTC GA-GACGCC-CGG        TTTTGCTGGGCGCGT  79 94
   Rpal_2069 NONE
   Rpal_2070 2241876 .. 2241893 +  -3.3  -3.15544   TGCGGCATTAGGCCG             GGCTC-CG AAG CGAGCGCC             TTCATCAAGATCAGG  44 114
   Rpal_2074 2246057 .. 2246073 + -10.8  -3.07192   CTTATCTTGCTGCCG              GCGGCG CCCGC CGCCGC              TCTATTGAAGGACTT  66 45
   Rpal_2075 2246935 .. 2246961 +  -4.4  -3.81146   CTTGCGAACGCGCCC        GT-CGCGCGTG CCGAAA CACGCGCCAAC         TTATTCGTTGCCAAG  56 126
   Rpal_2077 NONE
   Rpal_2078 NONE
   Rpal_2079 2250834 .. 2250849 +  -4.6   -4.1891   GTCGCCCGGACGAGC              CGGGCG ATGA CGTCTG               TTTGTGTTGAACAGC  65 276
   Rpal_2086 2260445 .. 2260457 +  -7.7  -3.57144   GCTCTCGGAATAGAC                TCCGA CGG TCGGA                TTTGCCGATACCCCG  62 28
   Rpal_2087 2262075 .. 2262087 +  -3.3  -2.92935   CGAACCCAGGAGAGT                GCCGT GCG ACGCC                TGATTTCCCGCTTCT  42 134
   Rpal_2088 2262277 .. 2262298 +  -7.3   -4.1721   TTGGTCGGCGGGAAG           TTGGG-GGCC GCC GGCCGTCCAA           TTTTCGAGTGTCGGT  72 60
   Rpal_2089 2264090 .. 2264114 +  -6.3  -2.52676   TGCTAAGAAAATAAT          CCTTGACAGCG TGA CGCTCTCCGGG          TAGCTTCCGGCCATG  48 27
   Rpal_2090 2264661 .. 2264674 +  -6.7     -3.94   GTAGTCTTACCTGGC               CCGAT ATTA ATCGG                TTATTTCGGAGTTCC  65 174
   Rpal_2091 2266450 .. 2266497 + -16.2  -4.57569   CGTCTGAGCTTTTGG AGCGGAGGCCCTGCGCCGCGCGG ACA TCGCGCGAC-CGGGGCCTTCGTG TTTTTGGCCGCGTCG 100 46
   Rpal_2092 2267750 .. 2267777 +  -4.7  -2.79679   GTTGGGGTGAGCCAC        TCGGGCCGCGG AGCTTG CCGATGTCCGA         TCTGATCAAGATGTT  44 31
   Rpal_2093 NONE
   Rpal_2094 NONE
   Rpal_2095 NONE
   Rpal_2096 2270399 .. 2270422 +  -4.5  -3.39327   AGCTGGTGAAGTTCG          CCGCGAGCTG AAGCG CAGCGC-CGG          TTCTCCCTCTCCCGC  48 15
   Rpal_2097 NONE
   Rpal_2098 2272236 .. 2272259 +  -3.2  -5.04175   AGCTATGAACAGCTT          CGAC-GATC CGGTTTA GATCTGTCG          TTTTTGTCTCGTTCG  79 311
   Rpal_2101 NONE
   Rpal_2102 2276411 .. 2276431 +  -2.4  -3.14931   CGGCATGGCGGCGGA            ACCATCGC GGGCG GCGACGGG            TTGCTGCACCATCAA  43 71
   Rpal_2103 2277243 .. 2277258 + -11.8  -3.01712   GTGACGCCGGTGAGG              CCGCCG CAGC CGGCGG               TGTTGCCGGGGCCGG  65 521
   Rpal_2106 NONE
   Rpal_2107 NONE
   Rpal_2108 NONE
   Rpal_2109 NONE
   Rpal_2110 2280014 .. 2280026 + -10.5  -3.64703   CGTTTGGCGAGGCGG                CGGCG TGA CGCCG                TTTCCGTGGGCGGAG  70 18
   Rpal_2111 NONE
   Rpal_2112 2280840 .. 2280871 + -10.2  -3.14211   TGCGGGCGCAGCCAA      GCAATCCAGCTC CGTGCATT GAGCGGGATTGC       TTCGTCGCGGAGCCT  64 54
   Rpal_2113 2281749 .. 2281770 +  -6.5  -3.14132   ACCCGGCGGCAATCA           GGCGGTG-CG GAT CGTCAACGCC           TTGATAGGACCCGCG  53 186
   Rpal_2114 2283281 .. 2283295 +  -9.2  -2.53263   CATTCTTTCAAGGCG               CCCGGC TTT GCTGGG               TCGCTTCAGGATGAG  56 78
   Rpal_2115 NONE
   Rpal_2116 NONE
   Rpal_2117 2285862 .. 2285882 +  -8.9  -3.07994   GTCGACGCCGGAGTA            GCGCTCGGC GAC GTCGAGCAC            TTCGATCCGCTTGGC  56 412
   Rpal_2119 NONE
   Rpal_2120 NONE
   Rpal_2121 NONE
   Rpal_2122 2291643 .. 2291655 +  -3.3  -3.28924   GGGCTTCGCCGCCAC                CGCCA CCT TCGCG                TTGTGAGGACACATC  46 7
   Rpal_2123 2293075 .. 2293096 +  -3.5  -3.96327   ATCATCGTCATTCCT           GGGCGCGCC GTCG GGTCCGGCC            TTTGTCCTGCCCGAT  56 62
   Rpal_2124 NONE
   Rpal_2125 2294593 .. 2294605 + -10.5  -2.71011   GAAGAAAAAGTAATC                CGGCG CCG CGCCG                TCGTTCACCGCGCAT  60 28
   Rpal_2126 NONE
   Rpal_2127 NONE
   Rpal_2128 2297362 .. 2297390 +  -8.9  -3.44051   GGCATCTGCTCCCGG        CGCGCTGGAAG CCGAAAT TTTTCAGCGCG        TTATCGTCATGAGCG  63 43
   Rpal_2129 2299022 .. 2299042 +  -9.7  -2.78596   GGCGCCTTATCCGGT            GCCGCAAAT GTC AATTGCGGC            TATCGTCCGACCATG  57 77
   Rpal_2130 2300294 .. 2300313 + -10.7  -3.31263   AGACAAACACTTCGA            GCGACGC CGCGAA GCGTCGC             TTGTGAACATCCGGT  69 80
   Rpal_2131 NONE
   Rpal_2132 NONE
   Rpal_2133 2303603 .. 2303628 + -18.3  -2.53876   CGCTCCTCACTCAAG         GACCCGGTCGC CGTG GCGGCCGGGTC          TCCCTTGGGATGACG  86 282
   Rpal_2137 2308021 .. 2308044 + -19.6  -2.78712   ACGCAGAGCAGCCGG          CGCGAGGCCG TGAC CGGCCTCGCG           TGGTTGGGTTCGGGA  90 121
   Rpal_2140 2311544 .. 2311575 + -10.1  -2.76261   GCCGACGGCGCTATC      CCGGGGACGGGTCG TAACC CG-CTCGTCCCCGC      CTTTACACCTTCCGG  60 90
   Rpal_2141 2312559 .. 2312574 +  -7.6  -4.31293   CGGTCTACCGACTTG              CACTAC CTCC GTAGTG               TTTCTTGGTATCTAA  76 148
   Rpal_2142 2313998 .. 2314027 + -21.5  -4.65722   AGCTATCACTCAGAC       CGAGGCGTCGTCC CACA GGACGGCGCCTCG        TTTCTTTATGTCTGG 100 66
   Rpal_2143 NONE
   Rpal_2144 2318626 .. 2318644 +  -6.6  -3.34013   CTCTCGATCGGTGAG             TTGCGGCG GTC CGGCGCGA             TTACTTGGCGGCGTC  55 65
   Rpal_2147 2323919 .. 2323954 + -24.2  -4.59773   CTCTCACAGCTCCAG    CGAGCCCCGGTTCTGA GCGA TCAGAACCGGGGCTTG     TTTTTGCGCGTGGGG 100 47
   Rpal_2158 NONE
   Rpal_2159 NONE
   Rpal_2160 NONE
   Rpal_2161 2339815 .. 2339831 +    -5  -3.32233   GGGTGGGACGGTCGA              GGGCGC TTAGC GCGGCC              TATCTTTCGTCATTC  50 16
   Rpal_2165 2344049 .. 2344086 +  -6.2    -4.254   GCCATATCTGCCGTA   AGACGTCGATGCCCGGC ACGAG GCCGGGCAT-GACGGAG   TTTGTTGGGTATTGG  71 108
   Rpal_2170 2349866 .. 2349890 +  -3.4  -3.92178   GTCGTCGCCGATGCG         GGAGGCGCCGC ATGA GCG-CGCCACG          TTTCGTTGCGGTGAT  56 11
   Rpal_2171 NONE
   Rpal_2172 NONE
   Rpal_2173 2354266 .. 2354276 +  -2.4  -3.32807   TGGCGCAACGATCCG                 CCGG CGA CCGC                 TTAGTGCTGTTTTCC  45 11
   Rpal_2174 2355515 .. 2355532 +  -3.4  -2.53876   TAACGACACGCTCTG             GGCG-TG ACGTC CATCGCC             TGACTTGCGATGGAC  39 38
   Rpal_2175 2356138 .. 2356148 +  -3.2  -4.39828   GGCCCGCAGCGCTTG                 GTTG CCT CAGC                 TTTTGTCCAGGTCTT  67 45
   Rpal_2178 NONE
   Rpal_2179 NONE
   Rpal_2180 2364863 .. 2364896 + -11.7  -3.25204   GCGCGGGCGAGGCCT     GCGGCGGTCTTGTGA ACCG TCGCAAGGATGCCGC      TCTGTTTGCGCGTCG  68 320
   Rpal_2187 2370544 .. 2370554 +  -2.4  -5.52384   CGCCACCAACGGCTC                 CGCG GTT CGCC                 TTTTTTTGGTCGGGC  90 207
   Rpal_2188 2371714 .. 2371765 + -24.6  -3.21099   GGCTGATCTGAACGC CTGAAACGAAAAGGCCCGGCCTCC GCGA GGAGGCCGGGCTTTTTTGTTGCCG TTCGTCATAGGGAGG 100 35
   Rpal_2194 NONE
   Rpal_2195 NONE
   Rpal_2196 2379872 .. 2379912 +  -3.9  -3.39216   TGATTTCCAACTAGC GGTTGGCAG-GGGCGCTGT GTATA AC-GCGCCCGCCGCGACCC ATTTTTAACTGGCGG  48 136
   Rpal_2197 2381364 .. 2381395 + -12.3   -3.0644   GATCACGATCCGCTA      CGCG-ATGGCCGGG CTCGT CCCGGCCATTCGCA      TGTTCGAGCTTCCCT  68 51
   Rpal_2198 NONE
   Rpal_2199 2383845 .. 2383889 +  -2.8  -4.72272   CACGCCTCAGTGATT TCGGTCAGCGAGTGTCGTCGCC TCT GTCGACG-CGCTCACTT-CTGA TTTTTGATGACGAAG  73 238
   Rpal_2202 NONE
   Rpal_2203 2389561 .. 2389575 +    -7  -4.86939   TCGCGTTTGGCCCTT               AGCGGC CGT GCCGCG               TTTTTGGATTTGTTG  83 209
   Rpal_2205 2390923 .. 2390945 + -20.6  -4.18018   AGACCTCACGCAAAA           GAGGCCGCCG TTT CGGCGGCCTC           TTTTGGCTCGGAGAA 100 40
        cysS 2394690 .. 2394723 + -18.9  -2.80935   GGCCTCACCCCGTCA     TTCCGGG-GCGCCCGC GCA GCGGGCGAACCCGGAA     TCTCGTCGCTACAAT  87 170
   Rpal_2209 NONE
   Rpal_2210 2395440 .. 2395450 +  -2.4  -3.21099   CTGGCGGATTCCGCC                 GCGC CCG GAGC                 TTCCTCATGAGCCGC  43 5
   Rpal_2211 2397103 .. 2397133 + -21.9  -4.41348   GACAGTTCTGCGTAA       GGGCGTACCGCCG AGATC CGGCGGTGCGCCC       TTTGTTTGCGCGGCG 100 73
   Rpal_2212 NONE
   Rpal_2213 2400344 .. 2400379 +  -9.7  -4.33417   CGCGACGTCGACCGC    TTCCTGATCGGACAG CTCACC CTGGCCGAGCGGGAA     TTTGTTGTGGCTCGC  83 155
   Rpal_2216 2405253 .. 2405266 +  -3.1  -3.60792   TAATCGTGTTGCAGC               GCCATG CAA CA-GGC               TTTCGAAGTTAGGGG  51 38
   Rpal_2217 NONE
   Rpal_2218 2406979 .. 2406991 + -10.5  -2.53271   GTGCCACCGCAGCGG                CGCCC CTT GGGCG                GTATTCTGAAACTCG  59 70
   Rpal_2219 2407988 .. 2408010 +  -6.9  -2.69468   CTCAGAACGATCAGT          GCCG-ACGGC TCGC GCCGCGCGGC           TGGTGTGTGCGCGTC  49 209
   Rpal_2220 NONE
   Rpal_2221 2409816 .. 2409828 +  -5.5  -4.11484   GAGACGCGCCACGGT                GGCAG GCT CTGTC                TTTTAAGCGCTTGCC  67 177
   Rpal_2222 2411935 .. 2411949 +  -2.8  -3.66018   TGGCGCCGCAATGGC               CGAG CCTCGTT CTCG               TTGTTGCGCTCATGG  51 173
   Rpal_2223 NONE
   Rpal_2224 NONE
   Rpal_2225 2414627 .. 2414642 +  -4.6  -2.61264   AAGACGGGGCGCTGA              CGCTCG GTAT CGATCG               CTTGTGGGTACGGGA  43 26
   Rpal_2226 2415895 .. 2415911 +  -5.7  -3.55444   GCGGCGGCCAGCAAT              CAGGCGG TCT TCGCCAG              TTTCGGCGCTGGCGC  57 42
   Rpal_2235 2424815 .. 2424840 + -11.8  -2.70932   ATCAGCCTTAGTCTT         CGGGCGCGGC GCTATG GCCGCGTTCG          TCCTTGGCGCCCCCG  66 42
   Rpal_2237 2428017 .. 2428029 +  -3.3  -3.34962   GACCTATCTGGTCTC                GGCGA GCT TCGAC                TTCTGAGGTCTCAGC  46 7
   Rpal_2239 2430687 .. 2430697 +  -4.6  -2.53876   GCGCGAGCACTATCG                 GCGG GAG CTGC                 TGCGTTAGCCTGAGA  43 7
        miaA 2432833 .. 2432849 +  -7.2  -5.60689   CGGACGGTGCGCTGA              GGGCCT TCGAC GGGCCC              TTTTTTATTGTCTGA 100 286
   Rpal_2242 2434738 .. 2434775 +  -6.2  -3.63895   GCGCTTGCTTCAAGA   ACGACGTCATGCGCGGG CGTGA CCCGCGCATC-CATCGA   TTTCCGCTCATTGCC  57 47
        ilvH 2435801 .. 2435843 + -12.6  -2.52464   GCGTCATATCCGGAT CGTCCTTTCGATAGCAGCGC CCG GCGCGGCTATTGGCCGGGCG TCCATTCGGCAACGG  67 436
   Rpal_2245 2436856 .. 2436871 +    -6  -2.52464   TTCGGCCGGGCCCGG              CCGCCG CTGC CGGAGG               TGGGTTGAGGGGCAC  45 2
   Rpal_2246 2438281 .. 2438304 +   -16  -5.01811   TACAGCCAATGCGAA          CGGGATCGCG GTGA CGCGGTCCCG           TTTTTCGTTTGGTGC 100 213
   Rpal_2247 NONE
   Rpal_2248 2440502 .. 2440525 +   -16  -4.82667   TCAACTGTCATGCAA          CGGGATCGCG GTGA CGCGGTCCCG           TTTTTGCTGTGATAG 100 86
   Rpal_2249 2441723 .. 2441739 +  -3.5  -2.71144   ATTGAGCTCCGATTT              CGGCGGC GTA GCCAACG              TCCTTGCCGCCGATC  40 326
   Rpal_2250 2443195 .. 2443210 +  -6.1  -3.32963   AGGGCGAGTCTGGGA              GCGGA TGGTGT TCCGC               TTATCCGCTCCGCGT  52 147
   Rpal_2253 2446553 .. 2446572 +  -7.8  -2.52464   GAGGGATGGGGTGGG            GGCGCC ACGCGGAC GGCGCC             TCGGTTCGGCGAAGC  50 107
   Rpal_2254 2447492 .. 2447513 +  -2.9   -2.9302   GGCGCAGCAGGCGGA           CTAGAGCGG GGCG CGGCTTTGG            CTTATTGTCCTTGCC  42 22
   Rpal_2255 NONE
   Rpal_2256 2449311 .. 2449347 + -20.2  -4.42639   ACTGATAACTTGCCG    GCTCGTCATGGCCGGG ATGAA CCCGGCCATGACGGTC    TTTTGGTTCGCGTCT 100 36
   Rpal_2258 2450774 .. 2450806 +  -6.1  -4.18197   CTTGGCGGGCTGCTG      CTTCTTAGCCGCCCC TGA GGGCCGTCTGGGCAG      TTTTGCCTGGGCACT  67 8
   Rpal_2259 2452521 .. 2452544 + -13.9  -4.58395   TGGAACGGTTCGAAA          GGGCGATGC CGCTGT GCATCGCCC           TTTTTCCGCGCTGCA 100 84
   Rpal_2260 2453696 .. 2453734 + -18.9  -4.07568   GACCAAGTAACATTT  GCGAACGGGCGCCCGCGT TCCG ACGCGGGCGCCC-TCTGC   TTTTGCCGGACCGCA 100 31
   Rpal_2261 NONE
   Rpal_2262 2455834 .. 2455877 + -11.8  -3.40403   CGACGGGCAGGGCGC TCATCTTCATGGCTACCTTT TGAA GGAGGTTGCCATGAAGAAGG TTCTGCTCGCCGGCG  74 124
   Rpal_2263 2456937 .. 2456950 +  -9.5  -3.61178   AGCGCAGGCGAACGC               CGCGC TGAG GCGCG                TTTGCGCTGGGTCCC  68 495
   Rpal_2265 2457809 .. 2457836 +  -5.6  -3.01712   TTGCCGTTGAGATAG        TTCTCTCGATCT CTCA AGATCGGAAGGA         TGTTACGCAACGGCG  47 351
   Rpal_2273 2462289 .. 2462303 +  -7.2  -2.89742   CGGCTGATGACGACA               TTTCGA CTC TCGAAA               TGTCTCCGAATTGCC  53 200
   Rpal_2274 NONE
   Rpal_2275 2463139 .. 2463181 + -14.8  -3.74792   CGATCTCCGGCACAA CGCCCATCGCGGTTCCGC AAGGAGA GCCCCACCGCGATGGGCG TTTCCATGTGTGCTA  88 115
   Rpal_2277 2464219 .. 2464253 + -21.5  -2.63382   GTGGCATGTACCTAA     GCGCTCCGAAGCCGT GCCCG ACGGCATCGGAGCGC     ATTATAGCTCTCGGA 100 202
   Rpal_2278 NONE
   Rpal_2279 2471220 .. 2471257 +  -7.6  -3.61398   GACCGCGTTCCTGCG   CAAGCTCGTCCGCCGCG GCCGG CGCGGCGT-CAAGCTGG   TTATTACCGACGCCC  62 454
   Rpal_2281 2472660 .. 2472675 +  -5.4  -3.02511   GTCCGGCCGCGCGAT              C-GCGAC GGT GTCGCCG              TCTTGAACAGCTCGG  47 77
   Rpal_2283 2473582 .. 2473593 +  -2.2  -3.78934   CAGAGCACCTGACCC                CGAT GGAC GTCG                 TTGTTCTCGACAAAC  52 50
   Rpal_2286 2476607 .. 2476620 +  -8.1  -3.61715   TATTAGATGTGCACC               CCCAG GATA CTGGG                TTATTCGCCGCGCTC  65 464
   Rpal_2287 2477425 .. 2477443 +  -3.8  -3.12668   AGAATGACGATAGCA             TGGAGTAA TAC TTTCTCCG             TTAACTGTCGGCGTG  47 281
   Rpal_2288 2479436 .. 2479452 +    -5  -3.09015   CGCTTGCGCTTAGAT              CCGTGC TCGAC GCCCGG              TTCGATGAGTGTAGC  47 401
   Rpal_2296 2487681 .. 2487692 +  -7.2  -2.90212   GGACGGTCGACGGCG                GCCG GTCG CGGC                 TATATCAGATAATGC  53 87
   Rpal_2297 NONE
   Rpal_2298 NONE
   Rpal_2299 NONE
   Rpal_2300 NONE
   Rpal_2301 NONE
   Rpal_2302 2495836 .. 2495848 +  -4.7  -4.07568   TGCATGGTCAATTGA                CCGGC CAT GCCGA                TTTTCAGCGCCACAG  63 520
   Rpal_2303 NONE
   Rpal_2304 NONE
   Rpal_2305 2498298 .. 2498338 +    -4  -4.03234   GCTCAGGGCGTCGAA GA-TTGCGTCACCGTGTGA CGCG TCACGTGGTGACACCGCTC  TTTGTGTACGCCCCC  61 283
   Rpal_2310 2501237 .. 2501267 + -11.2  -3.59979   TATCGTGGAGTTAAG      TCCGT-CGGTCGC ATTTTA GCGACCGGGCGGA       TTTCAGATCGCCAGC  73 403
   Rpal_2312 NONE
   Rpal_2313 NONE
   Rpal_2314 NONE
   Rpal_2315 2503936 .. 2503949 +  -9.5  -3.15663   CGCCGCTGCGATAGG               GCGCG TCGG CGCGC                TTGCTGACGATGCCT  59 425
   Rpal_2317 NONE
   Rpal_2318 NONE
   Rpal_2319 NONE
   Rpal_2320 2506681 .. 2506723 + -26.7  -3.72324   ACAATCGGCCGACTT TCCCTCAGACTTTCACTCA CCGTT TGAGTGAAAGTCTGAGGGA TTATTGATAACGCTC 100 146
   Rpal_2321 NONE
   Rpal_2322 2508172 .. 2508185 +  -3.7  -3.08679   TCGCTCGAGGACGAC               GCGGC GCTG GCCGA                TCTTGCGTAGGGGAG  45 2
   Rpal_2323 2508573 .. 2508622 +  -7.8  -3.02144   GATCTCAGTTGTCAT CAGATCGCGATCGCGC-A-GCGCGG GGG CCGCGGATCGCGCGGTCGCGC-CAG TCTTCGCACCAATCC  54 120
   Rpal_2326 NONE
   Rpal_2327 2511371 .. 2511388 +    -4  -3.64487   GTTACCGCTTGGGGA             GCGCCG ATGTCG CGTCGC              TTCTTAGGAATATCG  53 114
   Rpal_2328 2512251 .. 2512267 +  -2.2  -3.77196   GAACCTGGCGGTCGT              TGGCCT GCACG ATGCCA              TTTGCTCGATAGTAG  52 253
   Rpal_2330 2514843 .. 2514858 +  -4.7  -3.29829   TCACTAACTGTCAAG              GTACG GAAAAG CGTAC               TTCTCAGAAAGTATG  50 34
   Rpal_2331 2515986 .. 2516001 +  -5.4  -4.14739   TCGGTCGCGGCTTAC              CGCCAA GGGG TTGGTG               TTTTGGGATAACTCG  65 449
   Rpal_2334 2518964 .. 2518975 +  -4.4  -3.67068   GGTGGGTTACCGGGC                GTCA GTGC TGAC                 TTTCGAAATTTTGCT  55 343
   Rpal_2336 2522160 .. 2522177 +  -3.3  -3.68529   CGGCCAAAGGGGATT             C-ACCGCC AAC GGCGGCCG             TTTGAATCATGCGAT  54 3
   Rpal_2338 2523212 .. 2523226 +  -2.8  -4.43477   CTCCACACCTTCCAT               GTGATC GAG GATCAA               TTTTGCTTCGCTCGG  66 276
   Rpal_2340 2525580 .. 2525592 +  -4.8   -3.3197   CTTCATTTGGACGGT                CAGC CGCAA GCTG                TTGTCACCATACTGT  50 97
   Rpal_2341 NONE
   Rpal_2342 2528600 .. 2528621 +  -2.1  -3.54048   AGCGGGTTCCCGAGC           TGCGACAGA TCGA TCCGCCGCG            ATTTTGTTATGTTAT  49 49
   Rpal_2343 2529089 .. 2529102 +  -2.3  -2.51702   CCACGCGCCCTCAAT               CTGTC GTTC GTCAG                GTCTTCATCATGTTG  37 57
   Rpal_2344 NONE
   Rpal_2345 NONE
   Rpal_2346 NONE
   Rpal_2347 2535031 .. 2535045 +  -3.4  -3.28712   TGGAAGGTCGTTCCT               GCCGTG GCG CGCGAC               TTATCCCAGCGCGGC  46 71
   Rpal_2350 NONE
   Rpal_2351 NONE
   Rpal_2352 NONE
   Rpal_2353 NONE
   Rpal_2354 NONE
   Rpal_2355 NONE
   Rpal_2356 NONE
   Rpal_2357 2545872 .. 2545897 +  -8.9  -2.52896   CTTGCGGCAGAACAA         CGATGGCCGGG TTCG CTCGGCTAGCG          TCAGTTGAGCCATGG  53 60
   Rpal_2358 2546199 .. 2546227 +  -3.8  -2.93393   GGTGCTCGAGATCGA       GCG-TAGCGCCAA ATGA TTGGCGCCAGCGG        ATTTCTCGGGTCAGC  44 10
   Rpal_2359 NONE
   Rpal_2360 2548107 .. 2548158 + -11.4  -3.57128   GTAACGACGGCGTTG CTGGGCGTTCCGACGGACGCCTCG CGAA CGAGCCGTCCGTCACAACTCACCG TTCTGGTTCGTTAGT  73 115
   Rpal_2368 2554342 .. 2554362 + -12.5  -3.71917   TCGATTGCAAGACGG            TGGCCGGGT TCA GCCCGGCCG            TTTGCGGTTTGGGCT  81 362
   Rpal_2371 2557089 .. 2557126 +  -9.9  -3.08813   GAGACGCGGTAGTTA   GCTGAGTCGTCATCGC CGGTCGC GCGCTGGCG-CTCAGC   TCTCTTCCAATGCAG  62 29
   Rpal_2377 2562645 .. 2562669 +  -7.8  -2.58249   GCGCGATCACAAAAT         CGGCTTCG-GC CGCC GCGCGCAGCCG          CTTCTCGACGGTCTC  50 282
   Rpal_2384 NONE
   Rpal_2385 2570319 .. 2570329 +  -3.2  -4.36914   CCTCTCAACTCCATG                 CCAT CTG GTGG                 TTTTATGACCGACGC  64 94
   Rpal_2386 NONE
   Rpal_2387 2572785 .. 2572806 +  -8.7  -2.71712   CCAAAACCGCGCCAC           CGACGTTGCG CGT CGC-GCGTCG           ATTTGAGCGGGGCCG  54 106
   Rpal_2388 2573640 .. 2573664 +  -5.6  -3.75629   GTTTGACGTGCCCAT          GTGGCGCGGC GATCA GGTGCGTCAC          TTTCGGTTCGGCGTC  57 77
   Rpal_2390 NONE
   Rpal_2391 NONE
   Rpal_2392 NONE
   Rpal_2393 NONE
   Rpal_2394 NONE
   Rpal_2395 2581224 .. 2581262 + -20.2  -3.68351   GCATCAGGCAAAACG   CGACGGCCCGGCGCGACG ATC TGTCGGGCCGGGCCGCTG   TTTGGATACTGCGGA 100 41
   Rpal_2401 2590510 .. 2590523 +  -9.5  -3.28924   CGGTCATCACCACGG               GCCGG GCGT CCGGC                TTCTGACGGCCGCTG  61 250
   Rpal_2403 NONE
   Rpal_2404 NONE
   Rpal_2405 2595662 .. 2595677 +    -6  -2.76263   TGCGCCCGTGCCGAT              GCAGGC GAAC GCCCGC               TGATTCCATCATCCA  46 7
   Rpal_2406 2596226 .. 2596244 +  -6.7  -3.49777   AGCTGCAGGCGGACC            GACGCCGC AGTT GCGG-GTC             TTGTAGTCTATCACG  57 40
   Rpal_2413 NONE
   Rpal_2414 2603033 .. 2603056 + -13.2  -2.70932   TTACCAAAAATGCAA          GCCGTTAGCA GTTG TGCTGACGGC           TGATTGCCAGCCAGC  68 153
   Rpal_2415 NONE
   Rpal_2416 NONE
   Rpal_2417 NONE
   Rpal_2418 NONE
   Rpal_2419 NONE
   Rpal_2420 2608833 .. 2608861 +  -8.8  -2.74192   CATGTAGTTGCGCGC       ACGG-GGCTCGGC GGGA GTCGAGCCTCCGA        TGATCTTGCGAAGTC  54 346
   Rpal_2423 2612015 .. 2612031 + -12.3  -2.63382   CGGGGGGCGTTGGTC              GTGCGCA GCA TGCGCAC              ATTGTGGATGTCCAG  65 123
   Rpal_2424 2613430 .. 2613443 +  -2.3  -2.62184   GCCCGTCACGTGAAG               TGACC GCAT GGCCA                TGCTGTCGCAGCGCG  38 23
   Rpal_2425 2614232 .. 2614252 + -11.1  -4.09739   GCGAAACCCTAGGCT            CCTCGCAGC CGC GCTGCGACG            TTTTGGCGGAATTCA  82 29
   Rpal_2426 2615287 .. 2615316 +  -7.7  -2.62184   GTCTTTGGCTTTCCG       GATTGCGGCGGGG CCAG CTCCGCCGTGGGC        TCGTCTAGGCCGAGC  50 480
   Rpal_2428 NONE
   Rpal_2429 NONE
   Rpal_2430 2620264 .. 2620281 +  -6.2  -2.62983   TGAGGGAGCGCGCTG             CGGCTG GTACGA CGGCCG              TGCTATCAGAATGCG  46 190
   Rpal_2431 2621051 .. 2621070 +   -10  -3.40593   TTCCGCGTCATCTCG            CCCGGTGAC AAC GTC-CCGGG            TTGCTGTATTGTCCT  68 87
   Rpal_2432 2621985 .. 2622027 +  -6.3  -2.82623   CGCACCTGATCCTCG TACTCAGC--GCGTCGGCGCA AGA TACGCCGACGCGTGCTCAGCA TCATTCTGCCCAACA  49 32
   Rpal_2433 2622966 .. 2623014 +  -7.4  -3.21593   GGCGTGCTGCATTAG TTGCTGTCATTCCGGG-GCGCCGC GCA GCGGCGAACCCGGAATC-CGGAGA TGTTCTGCCACCGTC  56 26
   Rpal_2434 2624794 .. 2624819 +  -5.5  -3.57263   GGCGCAGGCCCGGAA         TCCATACTC-CC CGC GGTGATTATGGA         TTTCGGGCTCGCGCT  57 84
   Rpal_2435 NONE
   Rpal_2436 2628626 .. 2628657 + -14.5  -3.05384   GAGCGAAGCGAACAA      GCAATCCAGCGCC ATGCAC GCCGCTGGATTGC       TTCGCTGCGCCCGCA  78 75
   Rpal_2437 2629512 .. 2629557 + -18.3  -2.56596   CGGGGCGCGCGGAGC GCGAACCCGGAATCCCGAGGT TGTG GCGGCGAGATTCCGGGTTCGC TCACTTCGTGAGCGC  86 60
   Rpal_2438 2631258 .. 2631271 +  -2.4  -3.63515   TCGGCGGTTGTGGTT               CGAT CGGGCT ATCG                TTGTTCCCGATCGGA  49 89
   Rpal_2439 2632754 .. 2632785 + -10.2  -3.16881   GTCATTGCGAGCTAA      GCAATCCAGTTTCG AGTC CAGAGCTGGATTGC       TTCGTCGCGTCCCTC  64 45
   Rpal_2441 NONE
   Rpal_2442 2636172 .. 2636206 +  -2.2  -4.44461   CGCATGACCGAGTCC    CGAT-TTCGGCAC TTGTCCTGGT GCGCCGAACATCG     TTTTGTCGGATTGTT  65 99
   Rpal_2443 2637333 .. 2637357 +  -4.9  -2.52896   GTAGTGGACGTGGCG          CGGCGTTCG GCCGCTA CGACTGCCG          TCAATTAGGCGATCG  43 126
   Rpal_2444 2639440 .. 2639451 +  -3.6  -3.78775   TCGCAGCGGCACCGT                TGGC GCAA GCCG                 TTTGATGCTGCGCCG  54 9
   Rpal_2445 2641139 .. 2641181 + -19.9  -2.57136   CGCCGCGTAACTGCA ACCGCG-CGATGCCGGGGCC GTCC GGTTCCGGCATCGCCGCGGG GTTAATGATTAATAC  90 31
   Rpal_2446 2642485 .. 2642512 +  -4.1  -3.14051   GGTGCTGCGAAGGGA       CC-G-CCGCGCCG TCGA TGGTGCGGTCCGG        TATTCGTCCGAGTAG  47 54
   Rpal_2447 NONE
   Rpal_2448 2644623 .. 2644638 +  -6.8  -3.29144   GAGGCCCTGCTTGTC              GCGCAGC TCG GC-GCGC              TTCTGGGCGAAGTAA  54 159
   Rpal_2450 2646407 .. 2646423 +  -2.2  -3.48924   GCAGGCGCCGTACGC             GGCGCGC CAAA GC-CGTC              TTCTCTCCACAATCC  47 65
   Rpal_2451 2646863 .. 2646886 + -16.8  -2.80074   CCTCCGAAATGCGAA          GAGGGCGGAT GGAG ATCCGCCCTC           TGATGTTGTGGCGGA  81 56
   Rpal_2454 2649029 .. 2649064 +    -9  -4.09685   CGAACGACACATTGG    GCGGTCGAGCGAAC-GC TTA GCAGTTCGCTTCAACGC    TTTTCCGACATCCGG  76 497
   Rpal_2455 2652252 .. 2652270 +  -8.8  -3.09015   TCGGAGTTCGGCGCA             GTGATCGC AGG GCGGTCGC             TTGGCTGACTGTCCG  56 267
   Rpal_2459 2655948 .. 2655963 +  -4.6  -3.17723   CTGAACCAGTAGCAA              TCGCTC TGTC GCGCGA               TTCGATTGAAGATCG  48 37
   Rpal_2462 NONE
   Rpal_2463 2661222 .. 2661259 +  -5.5  -3.83502   CCCTGGCGGTAGCCG   GCG-TCGGAGATCTCGAC CAG GTCGAGATTGCGGCTCGC   TTTGGTGTCGAGATG  60 220
   Rpal_2465 2662818 .. 2662849 + -12.2  -3.61398   CCAGCGGCAGATCCT      CGAACGGCACCGGCG GCG CGCCGATGCCGG-CG      TTGTTGAACAGCACG  74 506
   Rpal_2472 2669021 .. 2669049 +  -7.4  -3.17075   AGCGGAGCAAAACAA        TCCAGAAGCACG TACAC CGTGGCTCTGGA        TTGCCTTGCGGAGCC  56 72
   Rpal_2473 2669702 .. 2669734 + -16.4  -3.06183   GACACGCGCCGCAGC     TTCG-CCTCTCCCCG CGCG CGGGGAGAGGTCGGA      TTGCGTAGCAATCCG  84 78
   Rpal_2474 2671137 .. 2671193 +  -7.2  -3.91911   CGACCTGCTGGATCG AGCT-GGCGTCGATTGCCGGGAAGATG TCCT CGTATTGCCGCCACTCGGCGCCGAGCG TTTCCTTCCAATCGG  66 510
   Rpal_2476 2672884 .. 2672914 +  -9.7  -3.32963   CGGCGCTCTGCAATA      CTG-GATCCCCCGC ATCC GCGGGGGATGACGG       TTGTCGCGTAGCGAT  63 169
   Rpal_2477 NONE
   Rpal_2478 2674771 .. 2674803 + -19.9  -3.59262   ACGGAATTTCACGCA      CCCGCGGCGAGCGAA GAT TTCGCTTGGCGCGGG      TTTCGCGATGTGGAA 100 42
   Rpal_2479 NONE
   Rpal_2480 2676360 .. 2676391 + -19.6  -2.91912   TCTCTCCACGATTCA      TTCCGGGT-CACGCC GAA GGCGTGAACCCGGAA      TCTCTGCATCGATCC  93 136
   Rpal_2481 2677866 .. 2677891 +  -7.5  -2.52676   CCGCATCACGTCGGG         C-CTGCAGGCGC GAC GCTCCTGCGGTG         TGCCTTGCGCCGATG  49 203
   Rpal_2486 2681975 .. 2681993 +  -5.8  -3.61398   GCACCGCGGCAGCAG             GCGGCCGC GTA GCAGGCGC             TTATTCCGCACGGCG  57 14
   Rpal_2487 2683561 .. 2683578 +  -5.5  -4.30576   CGGCCGCGCAGGCGG             GTCAAGC CCGC GCATGAC              TTTTCGTAGTAAGGC  71 191
   Rpal_2489 2687292 .. 2687307 +  -4.6  -2.83299   AATGATGCGCGAAGA              CGGCTT GCTC GGGCCG               GTTTAGCTCTGGTCG  46 4
   Rpal_2491 2688843 .. 2688864 +  -3.6  -3.16742   CGGGCTGCCTTGCTC           GGTGCGGT GACGAG ACTGCTCC            TTAGTCGCGCTTAAC  44 42
   Rpal_2492 2689227 .. 2689245 +    -3  -3.33969   CTGGGTCTGTTCGGA             CGCGGC CTTGGTC GCAGCG             TTGTCGCCTGCCTTC  46 84
   Rpal_2494 2691282 .. 2691306 + -13.5  -3.97444   GAATGCCTGGGGAGC          GGGGCGGGGCT GTC GGCCTTGCCCC          TTTGATTCGTCATAT  90 207
   Rpal_2495 2692978 .. 2692990 +  -9.1  -2.99433   TAACAGCCTTTCCGT                CGTCG TAA CGACG                TCTGTACTGTCATTC  60 53
   Rpal_2496 2694283 .. 2694323 + -16.2  -2.80779   GCCTGATCCCAAGCG CCGCA--GCGGAGCCCCGGC GTG GCCGGGACTCTGCGTTGCGG TGGTTCGATTGTCAT  81 35
   Rpal_2497 2695975 .. 2696030 +  -5.9  -4.62471   GGGGAGAGGTGAGGA CGGCG-CGGGGAGAAGCGC-GCTGACG CATG CGGCGGTTGCGCCGGTCCCCATCGCCG TTTTTCCCCGTTGCG  76 233
        guaA 2697835 .. 2697847 +  -4.1  -3.57561   TTGATACCAGAACAC                CGTTG TAG CAATG                TTTGAAGAATTGCGG  53 162
   Rpal_2499 2699403 .. 2699433 +  -7.4  -2.85351   CGGATGCGGTGTATA       TCGACCAGATCCGC AAG GCGGGCCTGTACGA       TGTCATCTGGCGGGC  53 192
   Rpal_2508 2707488 .. 2707505 +  -8.4  -3.34398   CGCCGCTGATGTGGC             GCCGCA ATCCGC TGCGGC              TGTTTGCGAAAACGG  60 155
   Rpal_2509 NONE
   Rpal_2510 2708663 .. 2708695 +    -9  -3.74693   CGGCCGGGGATGCTG      TGAGCGGACGCCGA AACGA TCGGCGCCCGCAGA      TTTGATCGCGTGCCC  71 23
   Rpal_2514 NONE
   Rpal_2515 NONE
   Rpal_2516 2714790 .. 2714806 +  -9.3  -3.05384   GACATCGGACGTCTG              CGCCGGC ACC GCCTGCG              TTCGATGGGGGGAAG  60 175
   Rpal_2517 NONE
   Rpal_2518 NONE
   Rpal_2519 NONE
   Rpal_2520 2718298 .. 2718324 +   -23  -4.91977   GTCAGAAAACAAGAA         CCGCCGCGTGGC TGA GCCGCGCGGCGG         TTTTCTGTTTTGGTA 100 116
   Rpal_2522 NONE
   Rpal_2523 2723536 .. 2723546 +  -5.4  -3.30741   CCTTGCTGCGCTTGG                 CGAT ATG ATCG                 TTCATCGTTCTGCGT  51 339
   Rpal_2527 2726460 .. 2726474 +  -2.7  -4.65895   GCGTCGCCTTGCGGC               GCGCC ACCCC GGCGG               TTTTTGGCTGAAGGG  68 357
   Rpal_2528 2730466 .. 2730495 +  -6.3  -3.72576   TGCCGCCGGTCATGT       CTCGATGAAGCGC GTCA GCGTTGCGGCGAG        TTTGGTCACGACGCC  62 352
   Rpal_2532 2734605 .. 2734619 +  -3.4  -3.86015   CCTGTCGGCCTCGCT               CGGGCC GAC GGTGCG               TTTCTGAGGAGGCTC  56 4
   Rpal_2533 2736433 .. 2736451 +  -5.8  -3.61764   CAGTTCAAAGACCCT             CCGGCCGC GAT GCGGCAGC             TTTCGCGCTTGATCC  57 99
   Rpal_2534 2738850 .. 2738899 +   -10  -2.56596   TGGCGGATCGGATCG GAGCAGG-GCAGGGTGAAGCGGAAC AGC GTGCCGC--CACCCGGCGCCGGCTC TGCCTTGATCGAGCC  57 86
   Rpal_2537 2742297 .. 2742342 + -16.2  -4.32402   CCACCGTCGAGGGGC CACGCGCGACCGATCACCTG CCGCCC CATGTGATCGGTCGCGCTTC TTGTTTTCGTTGCGG 100 395
   Rpal_2538 2743040 .. 2743068 +  -3.8  -3.57561   CGCATGCACCGGGGA       TCAAGGAGCC-GT CATG ACTGGCGCCTCGA        TTTCGGCGCTTGCCG  53 9
   Rpal_2539 2743772 .. 2743806 +   -10  -3.60792   AGCTTACCGCCTGCA     CGTCCGAATGGGCG AGGGCGA CGTCCATCTGGACG     TTTGGCGGTTCAACG  70 268
   Rpal_2540 2746594 .. 2746629 + -24.8   -3.8211   TGCGCTAACGACAAC    GAACGGGCCGGCGGCG GAAA CGTCGCCGGCCTGTTC     TTCTTCTAAATCCAG 100 33
   Rpal_2541 2747277 .. 2747308 +    -3  -3.57462   CCCGTAAATTTACGA      GGTCTC-GCGCGA TTCGCTT TTGCGCGGAGACG      TTTCAAGATCCGGTC  51 93
   Rpal_2542 2748116 .. 2748137 +  -2.1  -3.90559   CGCGGGCTAGGTCGT           CCGTTCGTC TGCT GGCGCACTG            TTCTTCCTTCTTGCT  54 57
   Rpal_2543 2749084 .. 2749114 +  -6.1  -4.48987   GCTGGGTTCGGCGAA      GCCGAGATCGGCCGC GAT GTCGCCGA-C-CGGC      TTTTCGTTCTCGGCG  76 146
   Rpal_2545 NONE
   Rpal_2546 2752606 .. 2752627 + -12.9  -4.16301   GGTGCACTGCGGATG           GCGCCGCGC TGAG GCGCGGCGG            TTTCTCTATCGTCTC  89 14
   Rpal_2547 2753858 .. 2753874 +    -3  -3.02144   GCGGTCGAGCGGCTG              TCGTGA GCGCA TCATGA              TCTTGAACGAACTGC  43 20
   Rpal_2548 2755310 .. 2755343 + -18.5  -2.80816   GGCCCGCGCTAAACA     CAATATCAATACCGT ACGT ACGGTATTGATATTG      TGTGATAGATGAGGG  86 337
   Rpal_2549 2756189 .. 2756234 +  -6.7  -3.03124   GCGTAGATGCTCGGC ACCGCATAGGCACCAGTCGGG TATT CCTGCGTGGTGTTGATGCGGG TCTTGGCCGATGCCC  51 302
   Rpal_2551 NONE
   Rpal_2552 NONE
   Rpal_2553 2761940 .. 2761952 +  -4.7  -3.67417   CCAGAGCTTCGCACG                CCCGG CGC CCAGG                TTTCCGCTTCGCTCT  55 394
   Rpal_2557 NONE
   Rpal_2558 2765124 .. 2765155 +   -16  -3.04144   ACACCGGCTGGCGCT      TCCCAAGGAAGGCA TCGA TGCCTTCCTTGGCA       TCTTCGGCCTGAAGG  77 86
   Rpal_2565 2771574 .. 2771592 +    -3  -2.92792   AGCGATCCGGCGATA             CGGCTC TCATGAT GCGCCG             TCGTTTGCCGTCGCT  42 121
   Rpal_2566 2772483 .. 2772519 + -15.4  -2.70353   TCGAGTGATGGCGTG   TGGCTGCA-TGTTGAGCG GAT CGCTCAACAATGC-GCCA   GTGTTTGCTCGTTAT  78 33
   Rpal_2567 2773901 .. 2773913 +  -4.7  -3.14132   TGGCGATCCTGGAGC                GCTGC CTC GCCGC                TTAGTACAGGGCGCC  48 9
   Rpal_2568 NONE
   Rpal_2569 NONE
   Rpal_2570 2778324 .. 2778338 +  -6.4  -2.78384   GGCGTGGTCCGTATC               TCATCG AGG CGATGG               TCTGATGCACGGACC  49 6
   Rpal_2571 NONE
   Rpal_2572 NONE
   Rpal_2573 NONE
   Rpal_2574 2783549 .. 2783565 +  -3.6  -3.15544   ATAATCGCGCGTTTG              GCTGCG AGCTC CGGAGC              TTGCTGGCGGTCGGG  44 37
   Rpal_2575 2785222 .. 2785237 +  -7.5  -3.16564   AACACGGTCGATCGA              GCCGG ACAGTG CCGGC               TTGATCGACTGCGCC  56 58
   Rpal_2576 2786788 .. 2786815 + -13.4  -4.49556   ATCGATCGTGACGGA        TGGCGCAGGCGG GGTG CTGCCTGAGCCA         TTTCTTTGATGCGAA 100 176
   Rpal_2583 2791843 .. 2791863 +  -9.7  -3.70902   CTCGCCAGCACGACA            CGCGAGC ACGAATG GCTCGCG            TTTCGATATCACCGA  71 111
   Rpal_2587 2797539 .. 2797552 +  -2.3  -3.28924   TCCATGAGTAGATCG               CCAGC AGCG GCTCG                TTGTCGGCGCGCATG  44 114
   Rpal_2594 2806584 .. 2806620 + -10.7  -3.60792   AACTTGATTGGGAGG    CGGCGAAGCGTTCGGGG ACT TCTGGATCGCCTCGCCG    TTTCGCCCTTCGCAA  73 87
   Rpal_2600 NONE
   Rpal_2601 2813292 .. 2813315 + -18.2  -4.67697   TTCTGAGCTATCTTC          GATGCCCGGC ATGT GCCGGGCATC           TTTATTGTTTTAGAA 100 61
   Rpal_2603 2815727 .. 2815755 +  -2.4  -2.91274   GAATTTAGCCGCGCC       GC-TGGCGGAGACG AGG TGTC-CCGCGAAGC       TGTGATTCGGATCGA  40 73
   Rpal_2604 NONE
   Rpal_2605 2817480 .. 2817494 +  -2.1  -3.53091   TCCCGCGCGTAATTT              CAG-GC CGCT GCTCTG               TTTCAAAGGAAGACT  47 29
   Rpal_2606 NONE
   Rpal_2607 NONE
   Rpal_2608 2821784 .. 2821799 +  -7.5  -2.64794   CAGATCTGTGCGCTG              CGGCC GATCCG GGCCG               TCGTATCGCCTTCGA  51 58
   Rpal_2610 2823851 .. 2823873 +    -9  -4.07568   GGATCACGATCATGC           CGGGCGTTGC GTA GCGGCGCGCG           TTTTCCAAAAGCGCG  75 456
   Rpal_2614 2827243 .. 2827263 +  -3.9  -3.71848   CGCCGCGCGTCCGGG            GGCGGAG CCATGAT CTCCGCA            TTCTTCATCAAAAGG  56 13
   Rpal_2616 2832301 .. 2832311 +  -4.6  -3.54424   GACGATCGCCTTCGT                 TGCG CAT CGCG                 TTTGCCGGCGTAAGC  55 170
   Rpal_2617 2834413 .. 2834425 +  -9.1  -3.27298   TCCCGACCTTCACGC                CTCGC GCG GCGAG                TTCGTCCTTCAGCCC  63 502
   Rpal_2633 2853292 .. 2853320 +  -5.2  -4.11216   GATCTGGCCGATACA       GCAGTGCTCG-CG CAAT CGACAGGCGCTGC        TTTTCGCCCTCCGAA  64 397
   Rpal_2645 NONE
   Rpal_2646 NONE
   Rpal_2647 NONE
   Rpal_2648 NONE
   Rpal_2649 2874138 .. 2874154 +  -5.7  -3.28712   ACGTCCTCGGGCGGG              GTGCCCC GGT GGTGCGC              TTGTGGCCCCGCCGC  52 277
   Rpal_2650 2876640 .. 2876682 +  -9.7  -3.59202   CTTCTGACGCGCTGC GATCAGGGAGGTCTCCGGC TGAAT GCCGGGGGCTTCCAAGAGC TTGTCTGTGCCAGTC  68 63
   Rpal_2651 NONE
        cobN 2883766 .. 2883787 +  -2.2  -2.94759   GCGAAGAAAGGCTAT           CGACGTGA ACGTGA TCGAGTCG            TCGTTATTCGAGTTG  40 18
   Rpal_2653 NONE
   Rpal_2654 2884646 .. 2884656 +  -8.2  -3.09135   GGTTCTCTGACTTTG                 CGCG CCG CGCG                 TGTGTTGCAGCTTGT  57 90
   Rpal_2656 NONE
   Rpal_2657 2888908 .. 2888922 +  -2.8  -4.07568   GGCGGCGACTATCGC               GTCACT GCG AGTTAC               TTTTGAAAGGGCGCC  58 5
   Rpal_2658 2889865 .. 2889885 +  -9.6  -2.87132   GTCGCAAATGGGAAA            GGCCCCGC ATGCG GCGGAGCC            TCTCTCACGAACACA  58 60
   Rpal_2661 NONE
   Rpal_2662 NONE
   Rpal_2663 2894137 .. 2894168 + -20.2  -3.27022   AGTAAGTGCGGCGGA      CCGCTCCGGCGC ACCCTGAC GCGCCGGAGCGG       TTGCTCTCCCCTCAA  95 36
   Rpal_2664 NONE
   Rpal_2665 NONE
   Rpal_2666 NONE
   Rpal_2667 2897607 .. 2897625 +  -5.2  -2.71712   GCCGAAATGCGCCGC             CATCTCGC GGT GTGAGCTG             ATTTCAACCAAGGAG  44 11
   Rpal_2668 NONE
   Rpal_2669 NONE
   Rpal_2670 2901192 .. 2901218 +  -8.8  -3.03243   ACGCGAACTAATCCG         GCGTCATTCTGT GTG ATGGAATGATGC         TGTTACGCAATACCT  57 49
   Rpal_2672 NONE
   Rpal_2673 2904322 .. 2904361 + -10.6  -3.05844   GGGTCAGCGATGCTC  ACCCGCAT-GTGCCGGTGC GTT GCGCGGGCGCGGTGCGGGC  TCTTGGCGTGCCGCA  62 402
   Rpal_2676 2906155 .. 2906165 +  -2.4  -3.05343   GTGCGCCTCCGGTCA                 GCAG CAG CCGC                 TGTTCCCGATGTCCC  41 182
   Rpal_2677 2907209 .. 2907231 +  -6.2  -4.37092   CGGCGCCACGTCGGC           CGCTGATCAC GAA GTGATCTGCA           TTTTGTAAGGCCGGT  73 9
   Rpal_2683 NONE
   Rpal_2684 2914322 .. 2914336 +  -3.5  -2.91695   CAAGACAGTAGGAAA              CGC-CG ATGT CGAGCG               TACTTTACCAATCCC  42 42
   Rpal_2685 2915055 .. 2915073 +  -9.5  -2.56747   GGCGCCGGCGTTCAA             GGGCGTG TAGGT CGCGCCC             GTCTTCTCCTGCGTG  56 16
   Rpal_2686 NONE
   Rpal_2687 NONE
   Rpal_2688 2918350 .. 2918380 + -21.2  -5.00616   ATCTCTCTCCCTCCT       GACGCCGTTCCGGT TCT GCCGGAGCGGCGTC       TTTTTTACGGGGCCG 100 92
   Rpal_2690 NONE
   Rpal_2691 NONE
   Rpal_2692 2922274 .. 2922290 +  -6.5  -3.43446   CCGCATGCGTGACGA              GCATCTC AAC GAGACGC              TGTTCTTCGATCTCG  57 403
   Rpal_2696 2927682 .. 2927703 + -18.7  -4.96646   CGCGAATCTGACGAA           CCCCGGCGG GCAA CCGCCGGGG            TTTTTCGTTGTCTCC 100 57
   Rpal_2699 2931729 .. 2931754 + -15.4  -3.54424   GAGTTTTCTCGCTCC         CGCGGCGGCC CCGACA GGCCGTCGCG          TTTAACCGCGTAGCA  86 39
   Rpal_2701 2933757 .. 2933800 +  -7.2  -3.03124   GCGCGTGAATCCTGC CGCGCGCTCCCGCTGCGTCGG CAT CCG-CGGACCGGCGCCGTGCG TATTGGGGAGTCCAG  51 275
   Rpal_2704 2937146 .. 2937173 +  -7.1  -3.71607   CAGCAGTAAGTGCGG       TCG--GGCTCCGA GAAA TCGGAGCCGTCGA        TTTCGCTGATGTTCC  62 32
   Rpal_2717 2949270 .. 2949306 +  -9.4  -3.28712   TTCTCATCCGAACAC   GATGTGCGCGGGC--CGG CTG CCGATGCCCGCGCAAAAC   TTGTCCAGCCGGGGA  63 53
   Rpal_2718 NONE
   Rpal_2719 2951314 .. 2951326 +  -9.1  -3.27771   CAGCACTTGTCCTTG                CCGCA GCG TGCGG                TGTTGATCTTCTGGC  63 126
   Rpal_2724 NONE
   Rpal_2725 2957102 .. 2957117 +  -4.6  -3.54158   GCGCCGCATCGTCGA              CCGCCA ACGC TGACGG               TTCGTTCTTCAAATC  55 13
   Rpal_2726 2958578 .. 2958611 +   -11  -4.07687   AATACTCGCTCTGAT     CGTGAGATGCCCGCG CTCGT CGCGGGCATCG-GCG     TTTTGGGGGGGGCGT  82 53
   Rpal_2729 2964980 .. 2965000 +  -8.1  -2.90496   GCCATCAGCGGTGCG            GGGACAGGC CTG GCCGGGCCC            TAGTTTGGCCACAGC  55 45
   Rpal_2730 2967686 .. 2967720 +  -9.4  -3.53012   TGTACTAGCCCCACG    GC-CAATCGCCGC TCGGTTGATC GCGGCGATTGCGC     TTTGACGCCGCGACC  65 33
   Rpal_2731 NONE
   Rpal_2732 2969998 .. 2970028 +  -9.6  -3.78953   GCGCGCAGGAATTTC       TGCGGGTCGACGGC TTC GCCGTCGATGCGGG       TTTCGTAGTGCAGAT  71 195
   Rpal_2735 2976123 .. 2976171 +   -11  -3.68351   GGCCCGATGACAGGC TCCG-CTAAGCAATCCAGCTCGG TGCA CGGCGCTGGATTGCTTCGTCGGC TTTGCCTCCTCGCAA  76 94
        anmK 2981018 .. 2981036 +  -2.2  -4.11216   GGTGTTGACGTCCTT             GGCCGGCG CCA CGATGTCC             TTTTCGCCATGGACG  58 241
   Rpal_2741 2982925 .. 2982967 +    -2  -2.70932   TAAGAGGGTTTCATC CCGCGCCGGATCGTG-TAAG CATGT CTCAGCA-GATCCACCGCGG TCCTTGAAACCGCGA  39 38
   Rpal_2742 NONE
   Rpal_2743 NONE
   Rpal_2744 NONE
   Rpal_2745 NONE
   Rpal_2746 NONE
   Rpal_2747 2988755 .. 2988766 +  -5.8  -3.57263   GGGATCTCGCGACGA                GGTG GTAA CACC                 TTTCGAAGTGGCAGT  57 43
   Rpal_2748 2989284 .. 2989304 + -14.7  -2.55712   TCCCAACGTGTAGAG            CGCGCGGTG CGC TACCGCGCG            ATATTGTGCATGTCC  74 71
   Rpal_2749 NONE
   Rpal_2750 NONE
   Rpal_2751 2993005 .. 2993031 +    -2  -4.35116   GAAGCACGGTTTCCT         TTCGGAGGCGCC GAT GGCCCGGCCGCA         TTTTGCTCTCACGTC  62 98
   Rpal_2752 2994759 .. 2994769 +  -6.8  -3.65351   CCTGGGATGCTGCGT                 CAGC GGC GCTG                 TTTGCGTCGCGATCC  59 96
   Rpal_2753 2995481 .. 2995510 +  -8.5  -3.96068   ACGCCGGCCGATAGC       GTCACCCGGCCGAG GAT CTCG-CCGGTCGAC       TTCTTCTTCAGCTCC  70 197
   Rpal_2757 3001343 .. 3001372 + -11.4  -3.54424   TTCTGACCGACTATG       GCGCAGGCGGACG CGATC CGGCCGCCT-CGC       TTTGAGGGACTGGAA  73 159
   Rpal_2758 3003123 .. 3003133 +  -6.8  -3.40403   CGCCTTCGCCATGCG                 CGAC GAC GTCG                 TTGTCCTGCCACAGC  56 256
   Rpal_2760 3005146 .. 3005187 + -12.5  -3.07994   GTCATTGCGAGCGAA GCGAAGCAATTCATCTC AGTGCAGG GACATGGATTGCTTCGC  TTCACTCGCATTGAC  71 384
   Rpal_2763 NONE
   Rpal_2764 3006493 .. 3006511 +  -5.3  -3.15663   CTTCTCGGAGATGAA            GG-CGAAG CGGG CTTCGGCC             TTGGTGCCCATCAGT  49 89
   Rpal_2766 3009496 .. 3009520 +  -2.2  -2.53911   ACGTCGCCGATCAAA         T-GCGCG-TCAT GAC GTGATCGCGCCA         TGAGTTGCGGCTTAG  37 40
   Rpal_2767 3010706 .. 3010759 +  -8.5  -3.40403   ATGACCGAGTGTCAG GCCGCGAGCCGCGGGGCGAGGTGGCG GAT CAACGCGACGCCCTCCGGCG-GCGGC TTCTGCTCGACCCGG  63 175
   Rpal_2769 3012346 .. 3012359 +  -3.7  -3.14463   ACCGTGCCGGTATTC               GCCGG CGAA CCCGC                TTGATCAAGGAGCTT  47 8
   Rpal_2770 3013394 .. 3013425 + -12.3  -3.08508   CGCTGCTAAGAGCTT      TGTGGCTCCCGTC TCCCGC GGCGGGAGCTACG       TCATTTTGGAACCTG  68 46
   Rpal_2771 3014252 .. 3014265 +  -2.4  -4.13767   CTCCAAGCGGGAGGC               CGAA GGCGGG TTCG                TTTTCGGCTGCGAGA  59 235
   Rpal_2772 3016252 .. 3016264 +  -4.7  -2.79648   AGCGCCCCGGAATGA                CGGCG CGG CGACG                CTTTCGGATCTGTTC  44 184
   Rpal_2773 3017138 .. 3017153 +    -4  -3.65351   GACCAGGAGCAGGTG              GATCGT ACCG ATGATC               TTTCCATAGGGGTGC  53 461
   Rpal_2776 NONE
   Rpal_2777 NONE
   Rpal_2778 3021185 .. 3021212 + -19.2  -3.75824   GTAACCAGGCCGAGA        CGCCGGCGATCCG AGA CGG-TCGCCGGCG        TTGTCTTCTCAAGTC 100 37
   Rpal_2779 3022531 .. 3022558 + -11.9  -2.72344   AACTAACTTGAGCGA        CGTGCGGCTGC TGCTTC GCCGCCGCGCG         TCGTTCAGGATCGCA  66 35
   Rpal_2781 3025057 .. 3025071 +  -7.1  -3.28712   TGACGATCGCGAGCG               GGCTG CATGT CAGCC               TTGTCGCAAACAGCC  55 82
   Rpal_2782 3026413 .. 3026437 + -11.4  -2.76696   AGCGATAGGCCGTCA          TTGGAGGCCG CCCGC CGGCCTCCGG          GTTCTTCCCCAAGAA  63 33
   Rpal_2783 3027825 .. 3027853 +  -6.6  -4.08767   GTTCGACCATTCGTA       CAGCCCCCGCCGC AAGC GCGG-GGGCACTG        TTTTGAGGAGCTGGG  67 41
        glpX 3028872 .. 3028908 +  -9.5  -4.96848   AGAAGTTCCACCTCG    ATTAAGTCGAAACCGAT TTC ATCGGGTTCGACTTACG    TTTTTCTGTAACGCG 100 21
   Rpal_2785 3029434 .. 3029444 +  -6.8  -3.07935   ATTTTGTAGCCCGCC                 CGAC CGC GTCG                 TTGCATCGCTGCGCT  51 32
   Rpal_2786 3030253 .. 3030294 + -20.3  -3.06183   TCTCCGTCATTGCGA GCGAAGCAATCCAGCTCCG TGCA CTGAGCTCGATTGCTTCGC  TTCGCTCGCAATGAC  93 60
   Rpal_2787 3032717 .. 3032751 +  -4.3  -2.66451   GAAGAAACGGAGGAA    GGGTATTATTCCACGGC TCG GCCGGGGCA-AA-ACCC    TGACTTTCGGTCAAT  41 519
   Rpal_2791 3036359 .. 3036379 + -15.4  -3.54424   CATGCCCACGAAAAA            GCCCGCCG GGATG CGGCGGGC            TTTGCGGGAGTCAGC  86 54
   Rpal_2793 NONE
   Rpal_2794 3039345 .. 3039395 + -11.2  -3.05384   AGACCGCTGGCCGAT GCAGACCGCCGCAACGCTGG--AGC GCTC GCTGACCAGCGTCGCGGTGG-CGGC TTGGATGGAAGGAGA  66 114
   Rpal_2795 3039663 .. 3039703 +  -7.3  -3.13432   AAGATCAAGAGCATC  TGCCGCGGCTGCTGACGCG AAC CGCGGCAGACGTCGCGCGA  TTAGCTGCTCTTGCG  56 11
   Rpal_2797 3041330 .. 3041351 +  -8.7  -4.45544   ACCCGATGGTGGCGC           TGGC-GGGCG GCT CGTCCGGCCA           TTTTCGTTGCTACAG  84 327
   Rpal_2798 3042909 .. 3042929 + -10.4   -4.3953   GAGGCAGAAAAGAAA            GGCTTCGC TGCTC GCGGAGCC            TTTCTTGTGATTGAC  95 74
   Rpal_2800 3045032 .. 3045051 +  -7.8  -4.25056   GCTCGGCGAATCATC            CTCGTCGC GGAA GCGACGAA             TTTGTTGATGACGTG  76 180
   Rpal_2801 3045809 .. 3045828 + -16.4  -3.71848   CGCCCAGAGGGCAAA            CGGCGCGC ACAC GCGCGCCG             TTCTTGATCGCGCCA  93 46
   Rpal_2802 3046768 .. 3046790 +  -3.4  -3.64822   GCAGCATTGACGAAA           ATCGACATAG GGT CTATATCGAC           TTTCAATAGAGGCCT  51 337
   Rpal_2803 NONE
   Rpal_2804 3047929 .. 3047950 +  -7.9  -3.70902   CGATGGTTGATAGAC           GTCGGTCGC GCGC GCGAGCGGC            TTTGGGTGTGGCAGG  65 278
   Rpal_2805 3049434 .. 3049461 +    -4  -3.53091   GGGTGGCGGGCTTGG        CGGCGGGGCGGG CGGG TTTGTCCTGCTG         TTTCGACCAGGAGAT  51 105
   Rpal_2807 NONE
   Rpal_2808 3052894 .. 3052909 +  -2.5  -2.82635   ATCGAGCCGACCAAG              TTCGG CCTGTT CCGGA               TGTGATGATCAGGAT  39 5
   Rpal_2809 3054984 .. 3054995 +  -7.2  -3.16564   CGTCCCGGCCATCCA                CGCC TTCG GGCG                 TTGGTCCGCTGAAAG  56 66
   Rpal_2810 3056410 .. 3056451 +    -3  -2.52464   CCACCAGCGCCAGGA TCGCGGCGA-GCAG--GCCCC AGC GCGGCAGCTGCATTGCCACGA TCGCTTCGGCGGCCG  39 466
   Rpal_2814 3059516 .. 3059541 + -11.1  -3.32022   CGCGTCGCCCGAGAC         CAGGGCGGCGG GCGT TCGTCGTCCTG          TTAGTCTGTCACCAG  69 43
   Rpal_2815 3063078 .. 3063114 +  -7.9  -3.45118   GTGACGGGCGGGGAG   GCCG-GTTGCGGCCGC GGGCAG GCGGTCGCGGCTCCGC    TTGGTTGTCGGATCG  60 87
   Rpal_2816 3063666 .. 3063687 + -15.1  -2.71681   AGGCCCATGACGCGA           TGGCCCGGC ACGA GCCGGGCCG            TCGTTGCCGCGGTTA  78 40
   Rpal_2818 NONE
   Rpal_2819 3065936 .. 3065965 +    -7   -2.8805   CGTCAGATCGGTACC       CGATTCGGCCGC CGGGCC GCTGCCGCGTCG        TGTGTGCGGGATCAT  50 417
   Rpal_2821 3066642 .. 3066664 +  -3.4  -3.21276   GGGTATCGCAATGCC           GAAGCCAG CTTGCCA CTGGATTC           TCTTCTCGCAAAGCC  44 76
   Rpal_2822 3068246 .. 3068262 +  -6.5  -2.70275   TCGAACCTGCAACCC              GCGGAGT AGA AATCCGC              TACTCTATCCAGTTG  49 126
   Rpal_2823 3073907 .. 3073928 +  -4.3  -2.62933   GGGCGGAGAGGATGG           TCGTGGCTC AGGC GGGGCGCGA            TCGTGTCGGCGGTTG  41 151
   Rpal_2824 NONE
   Rpal_2825 NONE
   Rpal_2826 3078641 .. 3078669 +  -3.7  -2.76815   GGCGCGCAGACAGCG       CCCCGGCCG-CG AGTTCC CGTCGGCCCCGG        ATTGTTCCGAAGCAT  42 47
   Rpal_2827 NONE
   Rpal_2828 3080053 .. 3080078 +  -5.3  -3.54741   TACTGGCTGTGATCC         CGGTCGC-CGCC AAG GGCGAGCCGTCG         TTTCCGGCCCTCATG  55 305
   Rpal_2830 3082383 .. 3082404 +  -2.9  -3.62775   TTATCCTGTTCTTTT           TGTCGGTCG GGGT TGGCTGACG            TTCTTAGGGCCTCAT  51 73
   Rpal_2832 NONE
   Rpal_2833 NONE
   Rpal_2834 NONE
   Rpal_2835 3088624 .. 3088636 + -10.5  -2.78816   GTCGTTTATCGTCGC                CGCGC CCG GCGCG                TGTCGTGGGGCATAA  57 170
   Rpal_2841 NONE
   Rpal_2842 NONE
   Rpal_2843 NONE
   Rpal_2844 NONE
   Rpal_2845 3103817 .. 3103838 +   -13  -3.02043   TGAGGGCGCGAGCCC           TCGCCGCG GCCTGA CGCGGCGA            TCTTGGCACAGGGTT  71 38
   Rpal_2846 NONE
   Rpal_2847 3107157 .. 3107178 + -14.4  -2.52543   CTGCCCATGAAAAAA           GCCGCCCC AGATGC GGGGCGGC            TCAATTCAACGACAT  74 360
   Rpal_2850 3108880 .. 3108903 +  -3.8  -3.71149   TTTCGCAGAGCGCCG          TGG-CCGAGGG GTT TCGTCGGTCCA          TTCTGTGTCTTATGG  56 103
   Rpal_2851 3110418 .. 3110443 + -15.4  -3.90112   GATTGCGGCCGCGAC         TGCGCCCGGG ATTCTG CCCGGGCGCG          TTTGCTTGCAAACAA  91 39
   Rpal_2852 3111586 .. 3111596 +  -8.2  -5.26875   GCGCGTTCGCGGCCC                 GGCG ACG CGCC                 TTTTTTGATTGCAGC 100 138
        valS NONE
   Rpal_2854 3115001 .. 3115013 +  -6.9  -3.14132   CTTGCACCTGCTGGT                CGTCG CCA CGGCG                TTGATCGGCGCCAAA  53 148
   Rpal_2855 3115777 .. 3115808 +  -7.2  -3.13403   AAGCGCTCTGGAATA      CTG-GGTCGCCCGGT CAA GCCGGGCGATGACGG      TGTTGATGCGGGAGC  56 162
   Rpal_2857 3117613 .. 3117629 +  -3.5  -4.07568   TCCAAGACCTGAAGT              CCGAGGC GAT GCCGCAG              TTTTCCAACAGGCGC  58 44
   Rpal_2858 3118150 .. 3118191 + -17.5  -3.06183   GCGAGGAGCGCAGCG ACGAAGCAATCCAGCTC GATGCACG GAGCTGGATTGCTTCGC  TTCCCTCGCAATGAC  88 81
   Rpal_2861 NONE
   Rpal_2862 NONE
   Rpal_2863 3124133 .. 3124180 +  -8.5  -3.33261   GGCAAGTTTTTCGGC TGTGGACCGCGTACTCGCCCGAG GTGG CTCGGGCGA-TGCGCCG-CGATA TTGTCGCAATTGAGC  60 49
   Rpal_2864 NONE
   Rpal_2865 NONE
   Rpal_2866 3128819 .. 3128833 +  -7.1   -4.6971   CTAAGAGAGCAGTTT               CACCG ATTTG CGGTG               TTTTCTTAAGCTTTG  81 2
         hfq 3129258 .. 3129280 +    -4  -2.70932   TTCGAAAGCGGCGAG           GACTCGCC AGCTTGA GGCGGGCC           TGATTGGAACCCCGC  42 11
   Rpal_2868 3130688 .. 3130714 +  -5.9  -3.54459   ACGAGCGCCGCCGCC        GCCGATTTCGGCG CTT CGCCGGAA--GGC        TTTCCGAGCGCTTCG  57 62
   Rpal_2869 3133691 .. 3133717 + -15.2  -3.05384   CAGCCAGAATCGAAA         GACCCCCGAG GGGGCAA CTCGGGGGTC         TTCGGTACAGAGCGC  81 121
        coaD 3134889 .. 3134899 +  -2.4  -3.18024   CGGCTCGCCGGCATA                 ACCG ACC CGGA                 GTTTTCATGATCCGC  43 25
   Rpal_2872 NONE
   Rpal_2873 NONE
   Rpal_2874 3136345 .. 3136361 +  -9.3  -3.16683   GTCAAGGCGACCATC              GCGGCCG ACG CGGCGGC              TTGATCAGGTCGCCT  61 5
        queA NONE
         tgt 3138999 .. 3139025 +  -9.4  -3.27475   GCTGTAGCCTATCCC         GGGACGGCCT CTGGTGC AGGCCGTGCC         TATTCTGATCGCAAG  63 277
   Rpal_2885 NONE
   Rpal_2886 NONE
   Rpal_2887 NONE
   Rpal_2888 3151818 .. 3151844 +  -4.2  -4.01419   TGTGAACTCTCCTTG         AGCCACGACGGC GTC GATGTCGCGGCG         TTTGGTTCATTCGTC  61 131
   Rpal_2890 3154906 .. 3154939 +  -7.3  -3.01712   GCCGGCTGTGCCGCC     TCGACGACGGTGACG GTCC CGGCTTCGTTGTCGG      TCTTGGCGAACACCG  54 134
   Rpal_2898 NONE
   Rpal_2899 3164676 .. 3164687 +  -7.2  -2.87132   TCCGCTGATGTAACG                CGGC GATC GCCG                 TGTCTGCGCAAGAAC  53 33
   Rpal_2900 NONE
   Rpal_2901 3166939 .. 3166970 +  -6.6  -3.70469   ACATTCAGCGGGCGC      TGATCG-CTGTCGAA CTG TTCGGCGGGCGGTCG      TTTCGGCTTATGGTT  62 23
   Rpal_2902 NONE
   Rpal_2903 NONE
   Rpal_2904 3170369 .. 3170379 +  -6.8  -2.53715   GGCCGCGCATTGTTG                 GCTC TCG GAGC                 GTTGATGCTGATCAG  48 57
   Rpal_2905 3170866 .. 3170878 +  -4.1  -3.14132   ATACGGTAATTCACA                CAGCT ATG AGTTG                TTAGTCGAGGCCGCC  47 265
   Rpal_2906 3172070 .. 3172081 +  -3.6  -3.14284   ACCGACCTTTTCGCA                CGGC TGAG GTCG                 ATTTCTTCCTGACAC  44 19
   Rpal_2907 3172992 .. 3173024 +  -2.7  -2.50307   TGGCCTGATCCCGGC     TGT-GGCGGCATTC GCGCAA GGGTGCCGCAGACA      ATTCCTCCAGCTTTA  37 33
   Rpal_2908 NONE
   Rpal_2909 3176024 .. 3176045 +  -7.3  -2.96274   GCCGAAGACGTCCCT           GCGCAAGCGG GGC TCG-TTGCGC           TGTGATTGTCAGACG  53 97
   Rpal_2910 3177582 .. 3177598 + -13.7  -3.24021   CGCGGAAGAACCTCT              TCGGCCG CGC CGGCCGA              TTACGTCTTTGCGAC  76 56
   Rpal_2914 3181840 .. 3181850 +  -8.2  -3.14931   ACCGAAACGTCGAGC                 GCCG ATA CGGC                 TTCATCCGCGATCAG  56 348
   Rpal_2922 3190457 .. 3190482 +  -2.6  -2.72991   CACGAGGCCGGCGGC         GCT-CTGGATG AGCAG CATCCAGAAGA         TGATTGCGAGTGTGC  38 343
   Rpal_2924 3191652 .. 3191664 +  -4.7  -3.54424   CCTTGCGGATGCTTG                CCAGC GCG GCCGG                TTTCGGCCAATGAGC  55 60
   Rpal_2925 3192381 .. 3192393 +  -5.5  -3.87815   TCAGCCATTTTGAGA                CCTCA TAA TGGGG                TTTCTGCGCATCGCC  62 495
   Rpal_2930 3198778 .. 3198788 +  -2.4   -5.1356   CCTGATACGGAGTAA                 GGCG GAA CGGC                 TTTTTCTTCATAGCG  83 344
        glmU 3201798 .. 3201811 +  -2.4  -3.50393   CGCATTGAAGTTGCC               GGTT TGGCTT AACC                TTGTGTCAAATCGCA  47 33
   Rpal_2934 3203889 .. 3203920 + -11.6  -3.40403   GAACGCCGAAGTGGC      GCGATCGAACCTGGC CGG GTC-GGATCGATCGC      TTATCCTCAGGGCGG  74 171
   Rpal_2935 3205179 .. 3205237 +  -6.5  -4.18494   AGGTGGAGGCTTCGC TGCCGCGACCGATCCGCC-CGCGCAGCTG ATG CAACTGCGCCAGGCCGAACCG-CTCGGCG TTTTCGATCACCATG  70 400
   Rpal_2937 NONE
   Rpal_2938 3210952 .. 3210999 + -13.6  -3.41051   CGAGGAGGCGAAGCC GACGAAGCAATCCAGAGACT GTGTATGG AGCCTCTGGATTGCTTTGCC TTCTGCTCGCAATGA  79 80
   Rpal_2942 3216735 .. 3216753 + -13.1  -4.17701   ATCGCGAAACGCAAA             GGGCGCC CCAGT GGCGCCC             TTTCTGCTTTCTGCA  89 53
   Rpal_2945 3219274 .. 3219298 +  -3.5  -3.35679   ACCAACCAACGCGAT         GCGCCGCTGT GCGTAA GCGGCGG-GC          TTCTCGATCGCCAGC  49 377
   Rpal_2947 NONE
   Rpal_2948 3221747 .. 3221762 +  -3.9  -3.06183   GCCGCCGGTTGACAA              GGCCG AAGCGA TGGCC               TTCCGTGACGCTGAC  45 60
   Rpal_2949 3223239 .. 3223276 +  -9.7  -3.34398   CGTCCGCGATCTGAT   CGGGCAGGGCGTTGGACG GTG CG-CCGGCGACCGGCTCG   TATTTGAACGCGCCG  61 491
   Rpal_2952 NONE
   Rpal_2953 NONE
   Rpal_2954 NONE
   Rpal_2955 3229317 .. 3229341 + -14.3  -3.18681   TTTGGTGTCGCCGTG          GATGCACACCG TGT CGGTGCGCATC          TTGATCACCTTGCCG  73 138
   Rpal_2959 3232690 .. 3232701 +  -4.4  -3.01791   AAACCTAAGGAGCGT                TGTC GATG GACA                 TCTTCGCGGCCGGGT  45 33
   Rpal_2960 NONE
   Rpal_2961 NONE
        mscL NONE
        smpB NONE
   Rpal_2964 3235763 .. 3235802 + -14.4  -2.60723   CGACGAGCGTCGCGA  CGAAGCAATCCATGCTTT ACGT ATGGCCTGGATTGCTTCG   CTTCGTTCGCAATGA  74 62
   Rpal_2967 3237951 .. 3237973 + -12.7  -5.93252   TGATGCTCTGCAAAA           CGGCTCGGA TCACT TCCGGGCCG           TTTTTTGTTTTTGGA 100 68
   Rpal_2968 3240544 .. 3240572 +  -7.4  -2.63596   ACTGAACTGGATTGC        TTCGTCGCTTCG CTCCT CGCAGTGACGAG        TGGTGTCCACTCCAA  51 113
   Rpal_2969 NONE
        acpS 3241840 .. 3241858 +  -2.3  -3.34013   TTCGTCATAGCATTA            GC-CCGCG ATAC CGCGACGC             TTGATTGCACCGGTC  45 58
   Rpal_2971 NONE
   Rpal_2972 NONE
         era NONE
   Rpal_2974 NONE
        recO 3246230 .. 3246251 + -11.5  -3.06831   GCCGTTGCGGAGCAG           GGCGTGCGG CACG CCGGACGCC            TTGAGTGCGGCTTCG  65 524
   Rpal_2977 NONE
   Rpal_2978 3249511 .. 3249543 + -14.2  -3.59293   GCATCGCATGATGCT     CG-CCCGCCTGCGCGC TAT GT-CGCAGGCGGGCCG     TTCGTTTGGCTTTGC  85 30
   Rpal_2979 3251464 .. 3251475 +  -2.2  -3.41602   ACTTGCAAGAAGCAC                TGCG AGCC TGCA                 TTGTGATGCGATGGA  47 467
   Rpal_2981 3252963 .. 3253003 +  -3.4  -3.63991   CTTTCGTGGGTGCGT GACGCTGCGCGAAGTACT GAGCGGG AGTGCTTC-CG-AGCGCC TTCTTGAACATGGTG  53 129
   Rpal_2983 NONE
   Rpal_2984 3256120 .. 3256139 +  -2.1  -3.29461   TGCTTATGCAGTACC            TGCCAGT GATCGG ACTGTCA             TTGTGAAACCGCTTC  45 0
   Rpal_2985 3257143 .. 3257158 +  -6.8  -3.54543   GGCCGCAGCTAATCC              TGCGGC TCCG GCTGCA               TTTCGCCGGATGCAT  59 124
   Rpal_2989 NONE
   Rpal_2990 3262078 .. 3262113 +  -6.3  -3.66178   TGAAGACCTTAACCG   GATC-GCG-GACGG-TCC GGC GGATCCGTTACGCAGATC   TTTCAAATTCGAACG  59 84
   Rpal_2991 3262991 .. 3263015 + -17.2  -4.41348   CAGACCTGTCGTCCT          TCGGCCTCCC CACAA GGGAGGCCGA          TTTGTTTGCGCCGCC 100 126
   Rpal_2992 NONE
   Rpal_2993 NONE
   Rpal_2994 3264142 .. 3264191 +  -6.2  -2.73364   GGGCAGGCGACGAGC TGACGGCCGCCAGGG-GCGCCGCC TTGA GCCGG-GCTCCCGGGGGGCCTACA TCATTGCCATGAGCC  46 23
   Rpal_2995 3265067 .. 3265091 + -11.4  -3.17212   GAGCACGTCCATCTG          CCGCTTCACC TCCAT GGCGAAGCGG          TTGATCGGGTACTCC  66 491
   Rpal_2997 3266140 .. 3266150 +  -2.4  -3.10533   GAAAGTCGGTCGTTG                 GCCC GTC GCGC                 TGTGTGATTTTCCGC  41 71
   Rpal_2998 NONE
   Rpal_2999 3268268 .. 3268303 +  -7.4  -2.78384   CGGCTTCGTCGTCGA    CCGCGGTGCAGTGCTCG ATG CG-GCGCGGGACCACGG    TGTAGTCGCCAGGCC  52 239
        glyA 3271812 .. 3271839 +  -6.3  -3.38991   ACGATCAACGGCCCG        T-CATGCCCGGG CTTGA CCCGGGCATCCA        TCTTCTTCGCAAGAT  55 40
        nrdR NONE
   Rpal_3006 NONE
   Rpal_3007 3274179 .. 3274206 +  -6.3  -2.73875   ATAGCAACGCTCCCG        T-CATGCGCGGG CTTGA CCCGCGCATCCA        TCCTCTTAACAAGAA  49 37
        ribH NONE
        nusB NONE
   Rpal_3010 3276183 .. 3276224 +  -3.5   -3.2665   GCGGAGTGACGTTCG CGG-CAAGCGCGATCGGCCC AGA GAGCAGCTTGCGTTGGACCG TATTCTGGCCTTTCA  46 32
   Rpal_3011 3277359 .. 3277375 +  -2.2  -4.08767   GTCCCTTCGCAGCGA              TTGCGG AGCAC CCGTGA              TTTTGGCAAGGTCCG  57 115
        hppA 3279649 .. 3279672 +   -21  -4.54727   TTGGTCCAACACAAA          GCCCCGCGGC GTAA GCCGCGGGGC           TTTTGCTTTGAAACC 100 54
   Rpal_3013 3280059 .. 3280078 + -16.4  -4.56597   TTGACCGCCCAAAAA            GCCCGCGG CAGG CCGCGGGC             TTTTTGCAGCAAGCA 100 59
   Rpal_3014 NONE
   Rpal_3015 3281343 .. 3281367 +  -5.5  -3.03214   GAATGGGCGAAGGGG          AAGGGGCTGGC GTA GCCGGCTCCGG          TGTCTCTGATGGGTT  49 11
   Rpal_3017 NONE
   Rpal_3018 3283310 .. 3283322 + -10.5  -5.47218   TGCACGCTTTTCACC                GCCCC GAC GGGGC                TTTTTTTGAGTCCAC 100 193
   Rpal_3019 NONE
   Rpal_3020 3285488 .. 3285520 +    -2  -3.75678   ACGCGGCGGAGTTGA     CCGC-CGGTAGTTAA CCTC TTAATTTCAGCGCGG      ATTTTTATTTCGCCG  52 95
        ihfA NONE
   Rpal_3022 3287113 .. 3287128 +  -6.1  -3.58329   AGGCTGGCGCCAATT              TGGCG CCTATC CGCCA               TTTGCCAAATCTTTG  57 463
   Rpal_3045 NONE
   Rpal_3046 3296869 .. 3296879 +    -4  -2.73124   CGTTATGTGCGTTCC                 TCAT GGG ATGA                 ATTTGAGCCGTGAGG  42 106
   Rpal_3047 NONE
   Rpal_3048 NONE
   Rpal_3049 NONE
   Rpal_3050 NONE
   Rpal_3051 3299272 .. 3299286 +  -3.5  -3.53745   GCAAGCCGCGGAAGG               TGGCT GCGTG AGCCG               TTGGTTTCGAATGTA  49 55
   Rpal_3052 3300382 .. 3300422 + -24.1  -3.14564   GGGGTGGGGGCTCGG  CGAGGCCCGGTGCAGCG TTCACGC CGCTGTGCCGGGCCTCG  TTCGTAAAGGGGTGA 100 199
   Rpal_3053 NONE
   Rpal_3054 NONE
   Rpal_3055 NONE
   Rpal_3056 3303142 .. 3303155 +  -2.3  -3.39896   CGGATCGTGGATGGC               GGCAT GAGT AAGCC                TGTTCTGTGTCTCGA  47 19
   Rpal_3057 NONE
   Rpal_3058 NONE
   Rpal_3059 3306397 .. 3306410 +  -3.8  -2.79098   ATCCAGTTCCAGTAA               GCAC GCATGG GTGC                TCCTTCCTCCATCGC  42 26
   Rpal_3060 NONE
   Rpal_3061 NONE
   Rpal_3062 3309218 .. 3309235 +  -6.9   -3.1886   GAACCCGGCGAAGGC             CCGCCGA CTGA TGGGCGG              TTAATCCGCTTCGCT  53 4
   Rpal_3063 3310493 .. 3310519 + -17.3  -2.82023   CCCACTGAGGCGTCG         TGGCGGCGCCA TGATC TGGCGCCGCCG         TCCTTCCTCTCGCTC  84 33
   Rpal_3064 3310989 .. 3311030 + -14.4  -3.54741   CTTGGCTCCACTTCG C-GTGGGCGGCTGCTGTTC TGAGC GATCAGCCGCCGCCCGCAG TTTCAACCCATCCTG  85 55
   Rpal_3065 3311683 .. 3311694 +  -3.6  -2.97653   CACCGACGCTGCGAA                CCTG TGGG CGGG                 ATTTCTAATGCCGCT  43 6
   Rpal_3066 NONE
   Rpal_3067 3313478 .. 3313490 +  -3.3  -2.64759   GCACGTTCTATTGGG                TGGCC CTT GGCTG                ATCTTGTTCGCGTTC  39 12
   Rpal_3068 NONE
   Rpal_3069 NONE
   Rpal_3070 NONE
   Rpal_3071 NONE
   Rpal_3072 3319787 .. 3319798 +  -2.2  -3.70037   CAAGTACCACGCTGG                CAGT TAAA GCTG                 TTTCCGTGGTGGTTC  52 19
   Rpal_3073 NONE
   Rpal_3074 NONE
   Rpal_3075 NONE
   Rpal_3076 NONE
   Rpal_3077 NONE
   Rpal_3078 NONE
   Rpal_3079 NONE
   Rpal_3080 3324417 .. 3324444 + -17.1  -3.75817   CCTTCCTCCCTGACT        GGCCGTCGATC ATGGCC GATCGACGGCC         TATTTCTTGTCAGCG 100 50
   Rpal_3083 3326056 .. 3326075 +  -3.4  -4.10429   CGTGCACTTGCGTCG            GCGCCTTC GTTT GCAAGCGC             TTTTCCCAGCTAATT  58 141
   Rpal_3084 3328548 .. 3328568 +  -2.3  -3.14051   GACGACGTTCAACTT            CTGACCGGC GGT GCCGTCCCG            TGTTGCTCCGGCTGC  43 22
   Rpal_3085 3329177 .. 3329192 + -11.8  -4.10161   CCACACAAACGAAAA              CCGCCC CGAA GGGCGG               TTTTCCAGCATCGTG  83 54
   Rpal_3087 NONE
   Rpal_3088 3331609 .. 3331655 + -15.9  -2.78384   TAACAACCTATCATG TCGTCATTCCGGG-GCGCGAGC GAAA GCTCGCGAGCCCGGAATCTCGA TGTGGTGAGGCACGG  78 38
   Rpal_3091 3337360 .. 3337374 + -11.4  -2.87132   GGCCGATCGCCGACA               TCGCGG CCG CCGCGA               TCTGTCCGCGCGGGG  63 197
   Rpal_3093 3339966 .. 3339984 +  -5.9  -2.78384   GCCGGGAAGCCGAGC             GCGCGGA TCCGC TCCGCGA             TCTGGTCGAGCGCGG  47 347
   Rpal_3095 3341511 .. 3341541 + -18.2  -2.96152   TCGCCGAAACAACAA       ACGCCGCCACCGTG ATC CCCGGTGGCGGCGC       TCCTGTTTTAGATTG  90 56
   Rpal_3097 3343082 .. 3343094 +  -9.1  -4.25104   AATTCAGCAACAATC                CGGCT GCG AGCCG                TTTTGGTGACGACGC  80 118
   Rpal_3100 3346007 .. 3346020 +  -3.7  -4.18018   GGCTCACCGGCCCTG               GCAGC TAAC GCCGC                TTTTCGATCCACGCA  63 111
   Rpal_3105 NONE
        rplM NONE
        rpsI 3351197 .. 3351216 + -16.4   -5.7946   ACCCGGTCGACAAAA            GGGCGCCC CGCG GGGCGCCC             TTTTTTTGTTGCGCG 100 52
   Rpal_3108 3352669 .. 3352688 +   -15  -3.55622   AGCGAGGTTGGGCAG            GCGGTGGC CTGA GCCACCGC             TTTCGACCGCTTCAA  85 14
   Rpal_3109 3353240 .. 3353270 +  -7.6  -2.64155   GGGCGGGATGTCGAT      CG-CCTGACGCTG GATAAG CGGCGTCAGGATG       TAGCTTTCGAGCGCG  50 204
   Rpal_3111 3355387 .. 3355397 +  -8.2  -3.72893   CGGCAACCTGCTGTC                 GGCC CGC GGCC                 TTTACTGAACGGCTC  69 7
   Rpal_3113 NONE
   Rpal_3114 NONE
   Rpal_3115 NONE
   Rpal_3116 NONE
   Rpal_3117 NONE
   Rpal_3118 3363111 .. 3363128 +  -6.9  -3.59979   GATGATCTCGGCTTC             GGTGGCG CTGG CGCCGTC              TTTCAGCTCGACGAA  58 376
   Rpal_3122 3369979 .. 3370007 +  -5.2  -2.82635   CGGCGTGACGCCCAC       GCCGCCG-CCGAT CCAG ATCTGCCGGCCGC        TGTCGTCCTCAAAAT  46 457
   Rpal_3126 3373383 .. 3373393 +  -6.8  -2.70932   TGGCGAGGACCATTT                 CGAC GAC GTCG                 TAATTCAGAGCGCCG  48 256
   Rpal_3128 NONE
   Rpal_3129 NONE
   Rpal_3130 NONE
   Rpal_3131 NONE
   Rpal_3132 NONE
   Rpal_3133 3380871 .. 3380887 +  -4.4  -3.26471   CAGCCGCAAACCGAA              CGAGGT ACTTC ACCTTG              TTGGTCTGAAGGTGG  49 504
   Rpal_3137 NONE
   Rpal_3138 3386782 .. 3386803 +  -7.9  -3.46602   GTCCGCATCGATACG           CGGCATCGG AATA TCGAGGCCG            TTCTGATGTAGCACC  60 437
   Rpal_3142 3390318 .. 3390328 +  -8.2  -3.30124   TGGTGGTGATGGTGC                 CGCC GTC GGCG                 TTGTCGACGATCACC  58 61
   Rpal_3145 NONE
   Rpal_3146 NONE
   Rpal_3147 3393267 .. 3393315 +  -3.2  -3.09516   CCGATCGGCGTTAAT CT-GCAGCCTGCCGACAG-ATCGC GGATG GCGAGGCTG-CGGC-GGCAGCGAG TTGGGTGATGGCGCA  43 93
   Rpal_3148 3394911 .. 3394926 +    -6  -3.15663   TATCGGTGGGGAACA              CCGCGG CCAT CCGCGC               TTGCTCCGCCTCGGT  51 480
        mazG NONE
   Rpal_3152 NONE
   Rpal_3153 3399212 .. 3399249 +   -30  -2.63596   CGCCGGCCCCAAAAC   GACGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCGTC    TCGTATCCCGTCCCA 100 47
   Rpal_3155 3401124 .. 3401142 + -13.1  -4.81249   GCCCCGCTTGCGGAA             GGCCGGC CTCGC GCCGGCC             TTTTTGCGTTTCGGA 100 62
        uvrA NONE
   Rpal_3157 3405595 .. 3405617 +  -9.9  -3.53012   TGTCGAGCGCCGCGA          GG-AAGGCGC GTGG GCGCCTTACC           TTTCGCCGGACGACG  68 174
   Rpal_3158 3406664 .. 3406674 +  -6.8  -3.75863   AAACGATTCGCCCTC                 GGGA GAT TCCC                 TTTCCTGACCATTTT  61 409
   Rpal_3161 NONE
   Rpal_3162 3409258 .. 3409272 +  -3.5  -3.66178   GGCACACCGGCTCTC              G-CCGG CGTA CCGGAC               TTTGAAATTGAGGAG  51 267
   Rpal_3163 3409619 .. 3409642 +  -9.6  -2.53876   CTGCGGTCCGGCAAT          TGCCCACGGCC GCG GGCTGTGG-CA          TCGGTTCCACTGCGC  56 61
   Rpal_3164 3410459 .. 3410471 +  -7.7  -3.21747   CGGCAGCTTGCCGCC                GTTGG CGA CCAAC                TTGCTCATCACCTGC  56 361
   Rpal_3166 3412124 .. 3412156 + -17.7   -4.4715   GCAAGCTCCCCACCT      CGGCCGCCGATCGTT CTC AGAGGTCGGCGGCCG      TTTTGTGCATTGCGG 100 53
   Rpal_3167 3412775 .. 3412807 + -17.8   -3.8709   TGTTTCTGCCTTCTA     CGGCCAACGCCCGCC TCCT GGCGGGCGTT-GTCG      TTTATGCGAGGCTTT 100 52
   Rpal_3168 3414635 .. 3414651 +  -7.9  -2.71364   GCTCCAAATCACAGC              CGTGCCG CTG CAGCACG              TCGTTCGGCAGATAC  51 339
   Rpal_3174 3420313 .. 3420327 +  -5.6  -3.53012   CGGCCGTGTTGCCGC               GTCGGC GAT GGCGAC               TTTGGGGGCAAGGCC  55 164
   Rpal_3175 3422047 .. 3422064 +  -4.7  -3.05596   TTCGATCGCTGACTC             CGGTCGG GTCG CCGGCAG              TTCGGTCAGCACCTC  47 29
   Rpal_3177 3424659 .. 3424681 +   -17  -4.44667   GCGTCCAAACAAAAA           TGCCCGGCCT TTC GGGCCGGGCA           TTTCTTCTTCCCCAG 100 69
   Rpal_3180 3427478 .. 3427522 + -13.4  -2.72379   AAGCAGGCCCTCGAC GCGACGCTGCGCGGCGCGGCG TAGC TGCCGCGTCACTCCGCG-CGC TCATTCCCGCGTTCA  72 2
   Rpal_3196 3444562 .. 3444593 + -10.1  -3.27525   ATCTGAACAAAGGCT      CGGTTGCG-GCGCC TCTTC GGCACGCGCAGCCG      TTGGATTTGAGACGC  66 43
   Rpal_3197 NONE
   Rpal_3198 3447336 .. 3447392 + -10.8  -3.53224   ATCGGCGCGCCTTGC GCCGGCGTCAGCTCGATCGCGCGGAGAG CAC CTGCCTGCCCGACCG-GTTGAC-CCGGC TTTGGCGGAGCAATC  70 512
   Rpal_3202 3450477 .. 3450512 + -12.4  -4.62471   ATCGCGGGCCAGCGT    CAGCCACATCAGGCCG CGAG CGGCCTGGCGCGGCAG     TTTTTCGCCGTTGAA 100 333
   Rpal_3213 3461096 .. 3461131 +  -9.7  -3.15544   GCAGATCGTCTCACC    GCCGT-CATGCCCGGG CTTGT CCCGGGCATCCACGCC    TTACTGCGGCTCGAC  61 54
   Rpal_3217 3465316 .. 3465344 +  -7.3  -3.53091   GGAAGCACTTGGGGA        CGCTATGCGCCCC GGC GCGGCGAATGGTG        TTTCGCCCGAAGGGT  60 42
   Rpal_3218 NONE
        mdoD NONE
   Rpal_3221 3469691 .. 3469712 +  -7.1  -3.57144   GCAATTCGCCAGCCA           CCGCATCCG CCGG CGGCCGCGG            TTTGAGGATGCGCGC  59 45
   Rpal_3226 NONE
   Rpal_3227 3474104 .. 3474128 +  -6.9  -3.29511   CCACCGTCAGCCCAC          CCGGCCGCGCG AGC CGCGCCACCAG          TTGTGCGCCGCTGCA  54 404
   Rpal_3229 NONE
   Rpal_3230 3475522 .. 3475580 +  -6.5  -2.73875   ACCAGGGGTGATCCT CGTACTCGACGATCTCCGGCAGCACGCC GTCC GGCGACATGCCGGAGAACTTC-AGGCCG TGCTGTTCGAGCCGG  47 161
   Rpal_3234 3480710 .. 3480729 +  -4.2  -3.17075   GGGGGCGGCGGCGAA            CTGACGGCG CGA TGCCG-CGG            TTCAGTTGCCGAAGG  47 22
        trpD 3481768 .. 3481799 + -10.9  -3.01712   CTGCGGCGGCCTAAT      CGT-CATGCCCGGC CTCGT GCCGGGCATCCACG      TCTTGGGCCAGGCGA  66 27
        trpC NONE
        moaC NONE
   Rpal_3238 3485891 .. 3485917 + -10.1  -3.03007   ACGCGTAGTCCACGG        CCTGCCGG-TCG ATCA CGAACCGGCTGG         TGTTGGCGCAGTCTT  62 85
   Rpal_3241 3487198 .. 3487233 + -18.9  -3.33696   CGTTAATCATCCCTC    GCCGTGCCCCGGCCG CGAAAC CGTCCGGGGCTCGGC     TTAGTTGCAAGCAAG  93 49
   Rpal_3242 3487616 .. 3487627 +  -5.8  -3.30124   ATCAATCGAGGTTTA                TGGC TGAA GCCA                 TTGTCAGCGCTGCAG  52 50
   Rpal_3244 NONE
   Rpal_3245 3489984 .. 3490014 +  -4.7  -3.05384   CCAAGCCTGATGAAC      CCGACAGGGGCCGAC GTC GTTG-CCCCA-TCGG      TTCAGTGCCACAGGA  47 116
   Rpal_3246 3490608 .. 3490627 +  -7.8  -3.05384   GCCTGTGCGCTCGGC            GCCGCCGTG GAC CGCG-CGGC            TTCGCTCGGAGCCGC  53 179
   Rpal_3248 3492256 .. 3492270 +  -5.6  -3.41878   TCCCGCTATAGCGAC               CCGTGA AAT TCCCGG               TTCTCGATTAAGAGG  55 30
   Rpal_3249 NONE
        gltX NONE
        gltA 3500312 .. 3500343 + -24.6  -2.90496   CCCAGCTCGATAATC      GAACGGCGAACCGC TCCA GCGGTTCGCCGTTC       TGCTTTGGGGCCGCA 100 48
   Rpal_3272 3523098 .. 3523141 +  -7.2  -2.73529   GGCGCGCGGCGCGCA CGACGGCATTGAG-CCGGCGC TGT GCGCCCGACCCTACGCCGTCA TAGATTTCTGTCACA  52 14
   Rpal_3273 3523714 .. 3523735 +    -3  -3.35996   CGAGACGCGGCGGTC           CATGCGGGC GGCGA GCTC-CATG           TTGTGGGTGGCGATC  48 270
   Rpal_3301 3550649 .. 3550667 + -10.2  -4.20084   ACAGAGGATTGAGAG             GGCCGCCA CTT TGGCTGCC             TTTTGCATAGCTGAT  81 71
   Rpal_3302 3551856 .. 3551886 + -14.7  -4.85782   GTTCAGATTGAAGAA      CGGCAGGCTTGGGC ATCC GCCCC-GCCTGCCG       TTTCTTTTTGGCAAC 100 158
   Rpal_3303 3553318 .. 3553329 +  -5.8  -4.55689   GCACGATGGCGCGCA                TCGC CGCC GCGA                 TTTTGTCTCAATCGT  76 69
   Rpal_3304 3554685 .. 3554695 +  -2.4  -2.53747   CGATCGGCCCTCACG                 AGGC GTT GCCC                 ATGTTCTCGCGCTTC  37 43
   Rpal_3305 3558043 .. 3558065 +  -6.2  -2.70932   GGCTCCCGGCGTCTG           CCGCCCAC CAGCTCT GTGCGCGG           TCATTCCGGGAGAGG  46 232
   Rpal_3306 3561041 .. 3561062 + -13.7  -3.61589   TTCGTCGGCTTCGGC           GCTGTCCGG GGTG CCGGGCAGC            TTGGTTTCCTCTTCC  78 80
   Rpal_3312 3570302 .. 3570313 +  -4.4  -2.93316   GCGCACCCGTTCAAG                CTTC GAGC GAAG                 TGGATTTTTGTTGCT  44 407
   Rpal_3314 3572256 .. 3572276 + -18.3  -3.53012   CCTGATCGCATCACC            TGGCGGCCG ATC CGGCCGCCA            TTTCACGACGACCCG  95 63
   Rpal_3315 3573739 .. 3573770 + -15.2  -4.65895   CGGCGACAACATTCA      GGGAAAGGCGCTCC TCGC GGGGCGCCTTTTTC       TTTTTGGATCGAACA 100 47
   Rpal_3316 NONE
   Rpal_3317 3575396 .. 3575427 + -10.9  -3.15503   ACTGAACATGCCAAG      CGT-CATGGCCGGG CTTGT CCCGGCCATCTACG      TCTTCGATCTTGCGG  67 46
   Rpal_3325 3587422 .. 3587458 + -26.9  -4.47551   TGCTCGTAAACTAAA    GAAAAGGGCTTCCCGAT CTC ATCGGGAAGCCCTTTTC    TTTTCTGAATTAAAT 100 32
   Rpal_3326 3589384 .. 3589403 +  -9.2  -2.73994   GACTACAATGTCCGC            CGTCGCGG ACGG CCGCGACC             TGATCTTGAGAGCGT  57 151
   Rpal_3327 3589754 .. 3589766 +  -6.2  -2.78384   AGACGCTTCGCTATT                GCGC CCTAC GCGC                TGTACTCAGAGCAAC  46 109
   Rpal_3329 3591212 .. 3591226 +  -8.6  -3.22475   CCCTTCACACTACGC               GCTTTC AAC GAAAGC               TATTCTCGCCATCAC  58 86
   Rpal_3330 3592614 .. 3592639 +  -5.3  -2.87132   CACGTAGCAAGCGTA         GCCCGCG-AGCG AAG CGATACGCGAGC         TATGTAGCGGCCACA  46 175
   Rpal_3331 3593535 .. 3593564 +  -9.9  -2.72144   TCGTTGAGCGGGACA       GATCATCGGCCGG GAGA CCGGCCGGTGAGG        GTTTGGCGAAGCTGC  60 183
   Rpal_3361 NONE
   Rpal_3362 NONE
   Rpal_3363 NONE
   Rpal_3364 NONE
   Rpal_3365 NONE
   Rpal_3366 3619397 .. 3619416 +  -6.4  -3.76839   CGAAATCCTCCGACG            CCGCGGCTC AGA GA-TCGCGG            TTTGAATTCAGCTTC  62 1
   Rpal_3367 NONE
   Rpal_3368 NONE
   Rpal_3369 NONE
   Rpal_3370 NONE
   Rpal_3371 NONE
   Rpal_3372 NONE
   Rpal_3373 NONE
   Rpal_3374 NONE
   Rpal_3375 NONE
   Rpal_3376 NONE
   Rpal_3377 NONE
   Rpal_3378 NONE
   Rpal_3379 NONE
   Rpal_3380 NONE
   Rpal_3381 3625805 .. 3625828 +  -4.6  -2.77233   AAACTGCCTGACACC          TGTCAGAGTT GGGA AGCTCTGAGA           ATTTCGGGATTGTGA  44 68
   Rpal_3382 NONE
   Rpal_3383 NONE
   Rpal_3384 NONE
   Rpal_3385 NONE
   Rpal_3386 NONE
   Rpal_3387 NONE
   Rpal_3388 NONE
   Rpal_3389 NONE
   Rpal_3390 NONE
   Rpal_3391 NONE
   Rpal_3392 NONE
   Rpal_3393 NONE
   Rpal_3394 3634284 .. 3634323 +  -5.6  -3.53811   TGAAAATTCGGCCAA  CTGGGAATCGCCCGGCTGG CGA CCAGCATT-CGTTTCCCAG  TTTGAGGACGGTCCG  57 177
   Rpal_3396 NONE
   Rpal_3397 NONE
   Rpal_3398 3638151 .. 3638177 +  -6.4  -2.78596   TTCGAGACGGCGCTG         CGCGCCGCCTCA CCT TAAGGGTGCGCG         TGTCGTGACGGGCTC  49 120
   Rpal_3404 NONE
   Rpal_3405 3645909 .. 3645921 +  -3.3  -4.18018   ATCCTCCCGCCAACC                AACGC GTC GCGTC                TTTTGAGTAACCCGC  61 3
   Rpal_3406 3646366 .. 3646418 +  -2.6  -3.05935   TCGACCGCAGCCCAG CTGG-CGGCCTGATCGATGGCCAAGC TCT GCTCCGCGACCGATT-GGCTGACCGG TTACATCCCCGATCT  41 14
   Rpal_3407 3647677 .. 3647701 +  -4.2  -3.09834   CCTGCGACAGGGCAA          CCGTCTTCGA AGCGA TCGACGACAG          TTCGCTGATGAGCTG  45 398
   Rpal_3415 NONE
   Rpal_3416 3658289 .. 3658307 +  -4.4  -3.84406   CGGGACGTCTTCGGT             CGCGACCC GTA GGATCACG             TTCTTCTCATGCAGA  58 351
   Rpal_3418 NONE
   Rpal_3419 3660753 .. 3660771 +  -4.4  -2.82516   CCTGAGTGAGGGAGG             GAGCCCGC AGC GACGGCTC             TGTCCTCCTGGAGAG  42 50
   Rpal_3423 3663594 .. 3663607 +  -4.5  -3.57389   GTTACCAATTTGATC               GGCGCC GGC GG-GCC               TTCTCTCCTCCTCTT  53 106
   Rpal_3424 NONE
   Rpal_3425 NONE
   Rpal_3426 NONE
   Rpal_3427 3669950 .. 3669974 + -15.7  -3.54741   CGAGCTGAAGCGAAG          CGGCGCCGAGT AAG ACTCGACGCCG          TTTCGGCCGCTCATC  86 33
   Rpal_3430 3675420 .. 3675439 +  -3.4  -3.91084   GGTGGGCGTGACGAA            CGCTAGCG CTGC CGCAAACG             TTTCGTTAACGATAC  56 52
   Rpal_3432 3677840 .. 3677870 + -15.4  -3.28712   GTGGTATTAGGTCTT       CGGCTTTGCCGCCG GCT TGTCGGCGAAGCCG       TTGTAGCAGGCGAGC  84 56
   Rpal_3434 3678733 .. 3678746 +  -5.2   -2.6294   CCGTACTGGAACCCA               CCGG CCAATA CCGG                ATTATGGGTCCTATG  43 54
   Rpal_3435 3679663 .. 3679699 + -13.2  -2.62263   TGCATGAAGCCGTAG   CGGATGATCAGGCGATGG AAG CCGTCGCC-GAT-ATCCG   TCATGTGCACGCGCT  67 288
   Rpal_3438 3682852 .. 3682882 +  -8.9  -2.67143   AGCCTAATCAGTACG      CAGC-GCCCTGCGC CTCG GCGCAGGGCTGCCA       TGATCTGCTCCCTGT  53 34
   Rpal_3439 3683367 .. 3683391 + -17.1  -4.21471   TTTGACCAAAAAAAA          CGCCGCGGGCT GTT AGCACGCGGCG          TTGTTGTTTTGCGGT 100 77
   Rpal_3443 3686524 .. 3686544 +  -3.2  -3.14344   GACGCTGACTCTGCT            CTCGTCCG GAAGG CAGATGAG            TTAGTCGGCCGGATC  44 33
   Rpal_3446 3688139 .. 3688174 + -16.3  -3.86776   AGCTCTTGGATCACG    TCGGCGCTTC-GCTGT TGATC GCAGCCGAAGCGCCGA    TTTGATCGTTACTTG  95 127
   Rpal_3448 3690561 .. 3690573 +  -5.5  -3.02511   CACCGACTTCATCCT                TCGGC TGC GCTGA                TCTTCCGAGCCTCGA  49 13
   Rpal_3449 NONE
   Rpal_3450 3692739 .. 3692777 +    -6  -4.07568   GGACAGCGGCGAATG  CGCC--GCACCGCGCC GTCAGTATG GGCGCGGTGCATGGGG  TTTTCAAACGAACAA  65 498
   Rpal_3454 3698738 .. 3698748 +  -8.2  -2.57564   ACGGCTTTGGGCAGC                 CGGC GTG GCCG                 ATTGTCGCCCACTAC  53 78
   Rpal_3455 NONE
   Rpal_3456 3701153 .. 3701173 + -10.3  -3.68988   TCGGTCACCAGCTCG            CGGGCCGAC ATC GGCGGCTCG            TTCTGTTCGCTGAAG  70 291
   Rpal_3461 NONE
   Rpal_3462 3708142 .. 3708158 +  -7.9  -4.08216   TCTTCAGGTTCTCCG              CCGAGGT ACG ACCGCGG              TTTTCAACCAGATCG  70 112
   Rpal_3464 3709618 .. 3709635 + -12.7  -5.55769   ACGTTCAAAGATGAA             GCGAGCC ACCC GGCTCGC              TTTTTTCTTGTCCGG 100 56
   Rpal_3467 3713129 .. 3713145 +  -6.5  -3.35679   TGAAGGTGTAGATGC              CCGCG CGCGCTC CGCGG              TTGTAGGTCAGAACC  55 142
   Rpal_3471 NONE
   Rpal_3472 NONE
   Rpal_3473 NONE
   Rpal_3474 3721834 .. 3721858 +  -2.8  -3.14132   AGCCGCGATGATCGA         GTATCGCTGAG ACGT CGCAGCGA-GC          TTCATCGCGGCACAG  44 16
        pdxA NONE
        ksgA NONE
   Rpal_3477 3724859 .. 3724907 +  -4.4  -2.69471   GCGAACTAATCGTCG CCTAATCCTGGCATTGCGGGTT CCCAA AAGCCGCAATGCCAGGCCCCGA ATTGTCTCACCCTCA  42 32
   Rpal_3478 3726333 .. 3726367 +  -2.6  -3.71848   TGACCACGATGTAAT     CGTAGGCGTCGAAGTG GCT CATCTCGTCGCCGGCC     TTCTTCATCCGACCG  51 169
   Rpal_3486 3734580 .. 3734592 +  -3.3  -4.25104   CTCCCCTGGGCCTTA                TCTCC CTT GGCGA                TTTTGATGCGGCAGG  64 61
        rpsF NONE
        rpsR 3735441 .. 3735475 + -17.9  -4.05245   GTGATCCGCTAATCG    AAGTAGCCCCGCGGCG TCCG CGCCGCGGGGCT-CTC     TTTACTTCTCTCATA 100 29
   Rpal_3489 NONE
        rplI 3737166 .. 3737191 + -20.5  -5.15634   GCAGCCATCGACGAA         GCCCGGCCTGA GTGA TCAGGCCGGGC          TTTTTTGCTGCCGTC 100 53
   Rpal_3492 3739902 .. 3739916 + -11.4  -3.01712   AGTTCGCGGTCGCAC               GGCCGA TGC TCGGCC               TCTTCCGCCGCGGCG  65 144
   Rpal_3494 3741960 .. 3741970 +  -3.2  -2.90723   AGGCAACGCATAAGG                 TGCG CCA TGCA                 TATCCTTCCCGATCC  42 87
   Rpal_3495 3743266 .. 3743289 +  -5.2  -3.35992   GAAGCGACGAAGCAA          TCCAGCACAG TGAA CTGCGCTGAA           TTGCTTCGCGTCGCT  50 84
   Rpal_3499 3747851 .. 3747863 +  -4.7  -3.40403   TGCCGACCCCGTGCA                CGCCG ATT CGCCG                TTGTGCTGACCGAGC  53 196
   Rpal_3500 NONE
   Rpal_3501 3750170 .. 3750189 +  -4.2  -3.09273   ATACTCGGGTCCGGT            CCGCGTAT GAGG ATGCGCGA             TATATCTTGAGCCGG  45 113
   Rpal_3502 NONE
   Rpal_3503 3752294 .. 3752315 + -17.3  -3.83026   CATCCGTTCAGCTTT           CAGGCGCCG CTTG CGGCGCCTG            TTTGCTGTCGGCGGC 100 54
   Rpal_3510 3759139 .. 3759159 +  -5.3  -3.34895   GCGCGGCCACATATA            GGCGACTTC CTT GACCTCGCC            TTCCTTGGCGGTGGC  51 173
   Rpal_3519 3767946 .. 3767958 +  -9.1  -3.44051   GAGGTAGTCCATATA                GGCCT GAT AGGCC                TTCTCGTCGTCGCAC  63 197
   Rpal_3523 NONE
   Rpal_3524 3770806 .. 3770820 +    -7  -3.31144   ATCTCGACCGCGAGC               CGCGCG GTG CGCTCG               TTGTCGACCTGCAGC  54 336
        pyrB NONE
   Rpal_3528 3776476 .. 3776486 +    -4  -3.20227   TGCTTCGGATTGAAT                 GAAA TCA TTTC                 TCTTCGTCATTGCGA  47 43
   Rpal_3529 3777216 .. 3777230 +  -3.4  -2.58861   GCAGAAGAAGTAAGG               CTGACG ATC CGACGG               ATTATCGGAATAGTG  39 28
   Rpal_3530 3778166 .. 3778190 +  -2.7  -2.62157   TATTACATCCCCAAA          GACTAGCGAGC TAG GCTCCCCAATC          GTTCTCAGATTACTA  38 20
   Rpal_3531 3779382 .. 3779394 +  -6.9  -2.79133   GTCGCTGAGCTGAAC                CGGCC CTG GGCTG                TATGCTGCCGGCTTG  49 28
   Rpal_3532 NONE
   Rpal_3533 3782108 .. 3782132 + -11.4  -2.57132   TCCAAAAAAGCCAAC          GGCCCGAAGC GGTGA GCTTCGAGCC          ATTGTCCAGGAGCGG  62 56
   Rpal_3535 NONE
   Rpal_3536 NONE
   Rpal_3537 NONE
   Rpal_3538 3789121 .. 3789151 + -10.4  -3.53012   AGATGCAGAAGGACA      TGC-TGCCGGGCG GCTGAG CGCCCGGCCTGCA       TTTGCACGAACAAGC  68 9
        rpmG 3790919 .. 3790936 + -14.1  -4.45168   ACGGCATTCCTTCCG             CGGGGCC TTCG GGCCCCG              TTTCTATTTTGGGCA 100 59
   Rpal_3543 NONE
   Rpal_3544 3794963 .. 3794998 + -11.8  -3.27051   GCGACACCACCGCGC    CGCTGCCTTTGATCGG CTGC CCGATCACCGTCAGCG     TGTTGTACACTTTCT  68 401
   Rpal_3546 NONE
   Rpal_3547 NONE
   Rpal_3548 NONE
   Rpal_3549 3798878 .. 3798888 +  -4.6  -2.72344   CGGCGCTGGCGCAGA                 GCTG AGA CGGC                 TACTTCACCATCGAA  44 21
   Rpal_3553 3801231 .. 3801289 + -10.2  -3.63515   GCCAGCGCCCGGTTG CGATTGAAGC-CGGCGGCGAGCTGCACG CCCCA CG-GCCGATCGGCGCCGAGCTTCACGCG TTGTTCGAGCTCGGC  70 262
   Rpal_3555 3804556 .. 3804581 + -14.7  -4.23781   AGCTCGACAAACGAC         GAGGCCGGCAA TCGC TCGCCGGCCTC          TTTCATTTTGATCGC 100 49
   Rpal_3558 3809642 .. 3809657 +  -4.6  -3.69605   CTGGATTCAGACGTC              GCCGGA CCGC TCGGGC               TTAATTTTGCCTCAC  58 313
   Rpal_3559 3811495 .. 3811517 +   -22  -4.87291   CTCGAACGAGACCAA           CGCGGCCGGG CTC CCCGGCCGCG           TTTTTCGTTGGCCTC 100 53
        panC 3816768 .. 3816804 +  -2.9  -3.28712   GCGGCAACGGCTGAT   GC-CGTCGCCATCGCG AAACGG CTCGATCGCGACCAGC    TTCTCGCGCGCCGCG  46 251
   Rpal_3569 3820021 .. 3820032 +  -5.8  -3.65812   GCAGCGTTCTCGGCG                GTCG TCCG CGAC                 TTGTCTTCCAGCACC  57 327
   Rpal_3574 3824319 .. 3824332 +  -4.5   -3.1506   CCATGGAACTTTGAA               CGGTT AAGC AGCCG                TTCATGACGCGGTTT  47 64
   Rpal_3575 3825722 .. 3825742 +  -3.9  -3.25823   CGGCAGCCGCCCTCG            CCCGCTCAA TCA TTGATCCGG            TTACTGTACCCAGCC  48 10
   Rpal_3576 3826248 .. 3826295 +  -2.1  -3.54638   CGCTTGGGGCGCAGC CGCCTGA-TGCGACTGTGGCGA CTGTCTC TCGCC-C-GTCACGCTCAGGTG TTTGACGGCGGTTAT  49 19
   Rpal_3577 3827060 .. 3827081 +  -8.1  -3.61715   GCGATCGACCAAAAC           CATGCCGGAT GCG AT-CGGCATG           TTATTGGCGAGGATC  60 370
        lipB 3828065 .. 3828075 +  -8.2  -3.21099   CTGTCGGCTTTACCC                 GCGC GAG GCGC                 TTACTCCTGCGCCGG  58 56
   Rpal_3580 3831107 .. 3831134 +  -3.3  -3.47941   CAGTTCGCCCATGCG        GGCGTAGGTCG CCGCGA TGAACTCCGCC         TTCTCGTCCTTGGTG  48 206
   Rpal_3582 3832334 .. 3832357 + -13.2  -3.05463   AGGCAGATCGCAGGC          TGAG-CCGGCG TCG CGCCGGTCTCA          TTGCGTCGACAGGAT  71 23
   Rpal_3586 3837824 .. 3837846 + -12.6  -3.53224   GGCAGGCCCGAGGCG           GCCGCGGCGT GAT GCGCCACGGC           TTTGGCGAACAGATC  74 303
   Rpal_3589 3840428 .. 3840439 +  -5.8  -3.27298   AGCGTTGAACAACTT                CGCT TAGC AGCG                 TTACTAATTGCGCGA  52 33
   Rpal_3590 3840868 .. 3840892 + -19.3  -4.80882   GATCGGCCGGCGAAA          GCCTCCGGAGC ACG GCTCCGGGGGC          TTTTTGCTGTCCGCT 100 53
   Rpal_3592 3843062 .. 3843098 +  -9.3  -3.14344   CGGCTGCGGATAATA    CGACATCAGCTCCGAGG TGC CCTCGAGGCTGGTGACC    TTGATGCCGAAGGTG  59 203
   Rpal_3598 3851697 .. 3851721 + -18.6  -3.08996   GCCGCCTGATCATCG          CCCCGGCTCG CCCCC CGAGCCGGGG          TCTTCCCTCGCAATC  91 32
   Rpal_3599 3852646 .. 3852663 +  -2.7  -3.81488   AGGCCGGGCTGGCAC             TC-GACGT TCA GCGTCAGA             TTGTGTTTGCGCAGG  56 466
   Rpal_3609 3867455 .. 3867492 + -12.7  -2.87211   CAGTTGCAGACCTTA   CAGATGCGGTGAACGGC GCAA GTCGTTCGCCGCATCAC    TGTGTCGGGCAGCGT  70 57
   Rpal_3610 3867980 .. 3867997 + -14.1  -5.64274   CGCGATCGATGAAAA             GCCCCGC TCGC GCGGGGC              TTTTTTTGTACGTCG 100 50
   Rpal_3615 NONE
   Rpal_3616 3873283 .. 3873304 +  -4.3  -3.35046   ATCCAGGCTACGCTT           GCGGTAATC TTGT GACCACCGC            TCTTTCCGAGCCTAA  48 103
   Rpal_3619 3876790 .. 3876800 +  -6.8  -3.71686   GCGACAGCGCTCCGG                 CGAG CAT CTCG                 TTCTCTTCGATTGGG  61 143
   Rpal_3627 3887172 .. 3887187 +  -3.2  -4.08767   TCGGCGACGGCGGTG              TCCGCT GACG ATCGGA               TTTTGACGGAGTGAC  58 18
   Rpal_3628 NONE
   Rpal_3629 NONE
   Rpal_3630 3888671 .. 3888683 +  -9.1  -3.06831   TGTGCTGACGCGAAG                CTCGC GCC GCGAG                TTGCATCGGCATTCG  60 60
   Rpal_3631 3889463 .. 3889514 +  -5.6  -3.55444   CTGACACGACCTGAT GCAACATCGCTC-CGCGGCCCTGCG CCG CGGAGTGCCGCGCGTGTCAAGCTGC TTTGACAAATGCGCG  57 37
   Rpal_3632 3892063 .. 3892097 +  -7.9  -3.65046   GCAGCGCCACCAGCG    CCTCGCCCACCGTGTA GCCG TACACGGTGC-CGATG     TTGTTCGGGTCGAGG  63 372
   Rpal_3639 3900530 .. 3900563 + -16.1  -2.82015   CTCTCTCCCGAGTCA     TTCCGGG-GCGCGAAC GAA GTTCGCGAACCCGGAA     TCTCCTGCGTGTCGC  81 82
   Rpal_3673 3922942 .. 3922965 +  -6.6  -3.89354   GACGAAGAACTGAGG          CCGG-CGGCCG CCG CGATCGACCGG          TTCTTGCTTTGCGCA  65 28
   Rpal_3675 3925097 .. 3925115 +  -5.8  -3.63968   GTTAGGAGCGTTGCT             GGGACGGC ACG GCCGAGCC             TTTGGCGGTTTACAC  57 432
   Rpal_3676 3926732 .. 3926755 +  -2.4   -3.9243   GGCGAGCCGGGGTCG          CCGGGC-CA CACCAGA TGCGTCCGG          TTGTTTCGCAGCTTG  56 252
   Rpal_3678 3929285 .. 3929299 +  -3.4  -3.30124   TGGCGGGCGATGGCC               TGAGCG GTT CGCACG               TTGTCGCCCGTCAGC  46 459
   Rpal_3680 NONE
   Rpal_3683 3934045 .. 3934056 +  -7.2  -3.44051   TCATCATCGTCGCCG                GCGC CATG GCGC                 TTCTGGTCGTCCCAC  56 127
   Rpal_3704 3964672 .. 3964713 + -13.7  -4.12296   CGCCGTTCTCTCCGA GTCATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATCTC TTCTTTGCTTATAAC  93 42
   Rpal_3707 3967470 .. 3967503 + -17.5  -2.91728   TGAGAGACCAAGTCA     TTCCGGG-GCGCGCGT GAA ACGCGCGAACCCGGAA     TCTCATCTTACCAAT  87 38
   Rpal_3708 3968715 .. 3968738 +   -16  -3.62054   CCGGATGATAGAAAA          GGCGCGG-CCG TTT CGGACCGCGCC          TTCATTGTTTGGAAT  91 82
   Rpal_3711 3972266 .. 3972289 +  -3.9  -3.01712   CGCGCGGGCGGCAGC         GTGGC-GA-GC AGCG GCATCCGCCAC          TCTTCCGGCGCGACG  44 173
   Rpal_3722 NONE
   Rpal_3723 NONE
   Rpal_3724 NONE
   Rpal_3725 NONE
   Rpal_3726 3988190 .. 3988201 +  -3.6   -3.7795   CATTTTCAACGAACC                GTCC GCGC GGGC                 TTTACTGGCCTTTAA  54 170
   Rpal_3727 3989576 .. 3989596 +  -3.2  -3.55444   TGATCGATCCGCAGA           CCGGCATCG CGCT CGAA-CCGG            TTTCGCCAGTACGAC  49 185
   Rpal_3730 NONE
   Rpal_3731 3992776 .. 3992803 + -24.2  -4.77165   TTACGTATGACGGCC        CGGCCCGGCGGA GCAA TCCGCCGGGCCG         TTTTGTTGTGAGGCG 100 50
   Rpal_3732 3995017 .. 3995056 +  -7.7  -3.68351   AAATGCGCTGAGGCG  GCTGGCTGATGCCGGCG CTGAGC CGCCGGCATCGCTCCAC   TTTGCCTCATCAGCA  65 30
   Rpal_3733 3997543 .. 3997559 +  -6.5  -3.76224   TGAGAAAGTAACGAG              GGCCG CCACCAT CGGCC              TTTCCTCGATCAGCA  62 139
   Rpal_3734 3998466 .. 3998497 + -15.4  -3.38316   AGGTTGCGAGTACAG      CGAAGCAATCCA-AG CCT CTCTGGATTGCTTCG      TTGCTTCGCTCCTCG  84 54
   Rpal_3737 4001094 .. 4001113 +  -9.2  -3.02144   CAGCCCACACCTCCA            GGGCGCGT TACG ACGCGCCA             TCTTGGAAACGCTGA  60 43
   Rpal_3739 4005496 .. 4005531 +  -3.2  -4.18164   AGGCGCACTAAGACT    GGGGCAGCTTCGC-GCG AAT TGCAGCGAAGATCTCTC    TTGTTTTGGACAGTT  61 102
   Rpal_3743 4008467 .. 4008490 +  -3.7  -3.91144   CGGCGACTGACATGC          GCCACGTGC CCTGTC GCACGCAGC           TTTCTGAACTCTGCA  58 49
   Rpal_3748 4016955 .. 4016982 +  -9.8  -3.53012   CATCAACTGAGATCT        CCCGTCGATCGC TGGC GCGATCGACGAC         TTTGCCGAGGGGCGA  68 31
   Rpal_3751 NONE
   Rpal_3752 NONE
   Rpal_3753 NONE
   Rpal_3754 4022984 .. 4022996 + -10.5  -3.01712   GACGGTCTTTGCTTG                GGGCG CCC CGCCC                TGTTGAGCAACGACC  62 198
   Rpal_3763 NONE
   Rpal_3764 NONE
   Rpal_3765 4043431 .. 4043467 +  -3.1  -2.87132   CGGCAGCGCAACGCC   CTCA-CCG-TCAGGCAG ACATC TTCCCTGAACGGATGAG   TGTCTGCGCGAACAG  42 59
   Rpal_3766 4045470 .. 4045489 +  -2.8  -2.88861   ACCAGCATCGCCGCA            CAGG-TGAC CTT GGCAGCCTG            TCTGTAGCCCTCATC  41 213
   Rpal_3768 NONE
   Rpal_3769 NONE
   Rpal_3772 4053869 .. 4053888 +  -2.1  -4.11216   CTAGAGACATCCGAA            TG-CGTGC ATTCA GCGCGACA            TTTTCAACGTGACGC  59 37
   Rpal_3773 NONE
   Rpal_3774 NONE
   Rpal_3776 4057529 .. 4057560 +  -5.8  -2.99178   GTTACGGCTGGAGGG      TCGGTCAGCGCTACA CGC TG-AGCGCCGCCTGA      TAGTTGTATTCTTCG  49 5
   Rpal_3777 NONE
   Rpal_3778 4060907 .. 4060920 +  -3.7  -3.48395   ACCGATTCATGCAGA               CCGGC GCCG GCCAG                TTATGTCCGCACCAT  51 263
   Rpal_3779 4062480 .. 4062490 +  -4.6  -4.31587   TGGAAAGCGTACTCG                 CCGC GGT GTGG                 TTGTTCTTTTTCAAG  68 257
   Rpal_3780 4064130 .. 4064148 +    -6  -4.09685   TCCAAACGCTCCGGC             CCCGAT GCCCAAG ATCGGG             TTTTCGACAATCACC  66 464
   Rpal_3783 4067561 .. 4067579 +  -4.4  -4.08216   CCTTGTGCTACAAGC             GTGATCCG GTG CGGCCCAC             TTTTCGGGCAGATAC  61 183
   Rpal_3784 4068059 .. 4068071 +  -7.7  -3.38812   CCGGCTTGGGATCGA                TCAGC CGG GCTGA                TGTTGTTCGACCCGC  58 171
   Rpal_3786 4070937 .. 4070952 +  -5.4  -3.13403   GCGCGCTGGTCGCTA              TCGCTGG CGG CC-GCGA              TCTTGGTGAGCAGGG  49 192
   Rpal_3790 4073038 .. 4073050 +  -6.2  -2.66291   ACAAGTCACGACCTG                CGCC TAGAC GGCG                TCCTCTGCATATGTG  46 47
   Rpal_3791 4073948 .. 4073971 +  -3.6  -3.32844   CCGGCGTGTCGAGCC          GGGCCCCCGC TTCC GCGGCCGCCG           TTCTGAGATGCGGGG  47 89
   Rpal_3796 4076636 .. 4076693 +  -6.8  -2.72043   CTGCTGGACTGCCCT CGGGAGCCGCGG-CGGGATCGGCATCGG CCCG CCCATGGCGACCGCGTCCGCG-CACCAG CTTTGCAGCACGATT  48 222
   Rpal_3798 NONE
   Rpal_3799 NONE
   Rpal_3800 NONE
   Rpal_3801 NONE
   Rpal_3806 NONE
   Rpal_3807 NONE
   Rpal_3808 NONE
   Rpal_3809 4090748 .. 4090777 +  -4.9  -2.62735   GGGAGCTTGATTTCG       GTAGG-CTGTTCGG GGA CCGGGCAGACCGGC       TCGTATCGGGCATAT  43 182
   Rpal_3813 NONE
   Rpal_3814 NONE
   Rpal_3815 4098040 .. 4098050 +  -5.4  -3.24188   ACACTAATGGTGGCA                 TCGT CGT ACGA                 TTAGTAATGATCTGG  48 34
   Rpal_3818 4102963 .. 4102981 +  -6.6  -4.07885   TAGCTCTTTGAGAGA             GCCCGAGG AGC CCTTCGGC             TTTTCAAGCAGACTG  66 450
   Rpal_3821 4104523 .. 4104541 +  -2.4  -2.94747   CTTTTAAATACCAGC             TTATGGTG CTC CAGCATGA             TCTGTGATGCACTCC  40 34
   Rpal_3822 4106079 .. 4106093 +  -5.6  -2.71681   GCAATGCCGCCTCCT               GACGCG TAC CGCCTC               TGCTTGACGGGCTTG  46 149
   Rpal_3823 4107490 .. 4107506 +  -2.1  -3.10905   TGCGACCGCAGCACG              GCCGTCG CAA CGAAGAC              TTCAGTGCCTTGTAA  41 44
   Rpal_3824 NONE
   Rpal_3825 4111086 .. 4111098 + -10.5  -3.66288   GTCGGACAATTCGAG                CGCCG CGA CGGCG                TTCTGTTCGACGATG  70 143
   Rpal_3831 4117515 .. 4117537 +  -5.5  -3.64822   CGCAGCGGCAAGTCC          CAG-CCGGAC GAAC GTCCGGACCG           TTTAGCTCCGCCCGT  57 100
   Rpal_3832 NONE
   Rpal_3833 4119831 .. 4119851 +  -5.4  -3.42574   ACCGTCGGCGGCATG           TCGGCGACA CCCG TG-CGCCGG            TTCTGATCGACTTCC  53 82
   Rpal_3836 4123720 .. 4123732 +  -6.2  -3.28712   TAGAGAAAGATGAAT                GCGG CATGT CCGC                TTCTGGCCCAAAGCG  52 350
   Rpal_3838 4126648 .. 4126662 +  -5.6  -2.70932   AGGGCGCCTTCGCCT               TCGCGC CGC GCACGA               TCCTTCGCGAGCGCG  45 284
   Rpal_3844 4134643 .. 4134671 + -17.4  -4.56597   ATCCAGAACGCAAAA        CGCCCGCCCGCA TCGGC TGCGGACGGGCG        TTTTTCAGCCGGCGA 100 42
   Rpal_3847 4137985 .. 4137996 +  -2.2  -2.62184   TTTGTAAACCGAAGG                TCGG GAGT TCGA                 TCCTCTCCGCCGGCA  38 178
   Rpal_3850 4140161 .. 4140181 +  -9.6  -3.81488   GGCAGCCAATCACCA            CCGGCACC CGCGT GGCGCCGG            TTCTGTTTCAGAGCC  71 336
        ppnK 4143727 .. 4143744 +  -2.5  -3.11812   TCCATGGCAGCTTCC             GCGGTGC TTTT GCTCCGA              TTCCCTGGTATCGCT  43 84
   Rpal_3857 4147132 .. 4147153 + -10.1  -2.50016   AAACATCGCGCTCGG           CTCGAACGC CCAG GCGGTCGAG            ATGTTGATGATGGCG  56 471
   Rpal_3861 4149291 .. 4149303 +  -3.3  -3.53444   TAAGGCCCGGGTCAA                CACCT AGC AGGCG                TTTCGAGAGCCATGA  49 19
   Rpal_3862 4150240 .. 4150260 +  -6.7  -3.61398   TTCTTCGGCGATCAC            TTCGTCGCG CAG CGCGGCGGC            TTCTTCGCGGGCGAA  58 360
   Rpal_3864 NONE
   Rpal_3865 NONE
   Rpal_3866 NONE
   Rpal_3867 4156173 .. 4156187 +  -3.4  -3.09015   GTACGCTCCCATCGT               CGCGGC GTA GTCCCG               TTCGGTGGCTGTCCG  43 16
   Rpal_3868 4157512 .. 4157527 +  -3.2  -3.28791   CACGTCCGGGAAGCT              CGCC AGATACGC GGCG               TTGTCGACCGGCACT  46 329
   Rpal_3870 4159402 .. 4159419 +  -9.1  -2.78463   CGCCCTTCTTCCACA             GCCGCTT ACGC GAGCGGC              TGTAGTACCAGGCCT  55 268
   Rpal_3873 4161074 .. 4161125 +  -9.5  -3.28712   TTAAGCCCGCCCTCT CCACGAGTCATTCCGGG-GCACGCGC GGA GCGCGTGAACCCGGAAT--CTCGACG TTGTGAAAAACGACG  63 37
   Rpal_3875 4163113 .. 4163128 +  -6.8  -3.14132   CTTCACCGTCGGCCG              CCGCGA TCAG TTGCGG               TTCGTCGCCGAACCA  52 401
   Rpal_3878 4165364 .. 4165390 + -14.5  -4.08216   GAAACGGCAGATGGG         CCCGTTCGATC TTAGC GATCGAGCGGG         TTTTGCCGCGCGTCC  93 69
   Rpal_3879 4165711 .. 4165728 +  -4.7  -2.74792   CCCGGCTGGAGACGA             CGATGGC GACC GCCGACG              ATTTCAAACTGATCC  44 67
   Rpal_3880 4165942 .. 4165959 +  -6.3  -3.92522   CGACACCATCACCGC             CTGCTGCT TGA AGC-GCAG             TTTGTAGGCTTCGGC  64 57
   Rpal_3883 4167716 .. 4167731 + -11.8  -2.62184   GGCTGATCATTTCGA              CGGGGC GCTC GCCCCG               TGGTCTGCCGCCGGC  65 35
   Rpal_3884 NONE
        thrS 4171619 .. 4171630 +  -7.2   -4.7254   TGCCCGGGCTGGTCC                CGGG CATT CCCG                 TTTTTGGTAGGCCGT  86 172
   Rpal_3888 4173269 .. 4173287 +  -7.4  -2.74012   CCGGCCCTCGAACAC             CGTGCC CCAGATC GGCACG             TCCTTCAGCTGCTCC  51 116
   Rpal_3892 4180667 .. 4180680 +  -5.9  -3.57263   TGCCCGGTCGACGCA               TCGGC AAGC GCCGG                TTTGAGGATGCGGCT  56 486
   Rpal_3896 4185100 .. 4185118 +    -3   -3.8062   CTCCCATAACGCCGC             CTGCCG AGCCCTG CGGCTG             TTGTTGTGACACTTG  54 497
   Rpal_3899 4187187 .. 4187213 +    -8  -3.21276   GCTGACGCTCAACCG        CCG-TTGCGGC AAAGCC GCCGCGATCGG         TCTTGTAGCAGGCGC  54 72
   Rpal_3901 4189056 .. 4189078 +    -9   -3.1876   AACGACGCGAAACTG           CGCGTGCCGC AGC GATGCACGCG           TTAATAGCTCAAATT  61 156
   Rpal_3902 4189944 .. 4189982 + -12.4  -3.57561   CGTCCCAGACCGGAT  CGTG-CGCGGCCAGCCT CCCCCA AGGCTGGCCGCACCCCG   TTTGGAGCCTTAGAA  75 92
   Rpal_3906 4194459 .. 4194493 +  -5.6  -4.12942   GGACGCACGAATCGA     TTGAAGCCGCAACGGC GCC GTCGTAGTGGTCTCAG     TTTTAAAGAATTTGA  67 170
   Rpal_3907 4194867 .. 4194879 +  -3.3  -3.73072   ATGAAAAAAACACAA                GAACG GCG CGATC                TTTGATAACGAGATT  54 8
   Rpal_3909 4198898 .. 4198931 +  -9.7  -5.41746   CTTGTAAACCTCCAA    GGA--ACCTCCGGCG ATGCCC CGCCGGAGGTTTTCC     TTTTTTTGGAGGCTT 100 57
   Rpal_3911 4199691 .. 4199709 +  -4.4  -3.35813   CCCAACCACGCAGCC             ACGCGCCA GCT TGGCGCCA             TTCATTACGATCGCA  51 247
   Rpal_3914 4201473 .. 4201490 +    -4  -4.19238   AATCTTCCTTCTTCG             GCCGCG GCACCA CGCGGA              TTTTCGGATTGCCGA  65 179
   Rpal_3919 NONE
   Rpal_3920 4206762 .. 4206774 +  -9.1  -2.75963   TCGAGCTTGGCGAGC                CGCTC ATC GAGCG                ATTTGCGCTCCGCCT  55 280
   Rpal_3922 4207572 .. 4207588 +  -5.8  -3.55071   CCGCGTCTGGCTTGC              CTTGCC AAACC GGCAGG              TTTGGAACAGTGTCG  57 53
   Rpal_3923 4208959 .. 4208978 +  -9.2  -3.02043   CTCCGGCTTGGTATT            CGAGCCGC GTAT GCGGCTCA             TATTAAACCGCCGTT  57 483
   Rpal_3928 NONE
   Rpal_3929 4217586 .. 4217615 +  -8.6  -2.93723   TCGTCCCAAGCACAA       TGTCATGCGCGGG CTCGA CCCGCGCATC-CA       TCTCCTTCATAAAGA  55 49
   Rpal_3930 4218971 .. 4219014 + -10.8  -3.32268   TGGTGTTCACCACCA CGATCTCGAGCGGCGCCAGC GTGT GCCCGATCCGCTCGAGTTCG TTCTCGACGTCCTTG  69 412
   Rpal_3933 4221481 .. 4221533 +  -6.2  -3.57144   ATGTGCTTGAAGATC GACAGCGCGGTG-TCGC-GCGAACGC TCC GCGTTCGCGGTGAGCAGCACGTAGGC TTTCGGGATCGCCAG  56 267
   Rpal_3943 4230934 .. 4230945 +    -3  -4.27584   CGCCGGTAATTTATA                TGAT GGAC ATCA                 TTTTCAATTGCCGGT  64 83
   Rpal_3944 4232272 .. 4232300 + -11.5  -3.25823   CAGCAAGGCTGCCAA        GCCGGCGGCGGCC TGA GGACGCAGCCCGC        TTCCTCTCCCCGCGC  69 10
   Rpal_3947 4235423 .. 4235435 +  -9.1  -2.52464   CCGATAACAAAGCAA                TCCGC AAA GCGGA                TGCGTTCGGGAGAGA  56 178
   Rpal_3948 NONE
   Rpal_3949 4238711 .. 4238756 + -20.4  -3.50532   TCCCGTCGTGTAGCA CTTCCCGCTGCGGCGCCGGT ATCAGC ACCGGCGCCGCAGCGGCATC TTGGTTGATTTCCCT 100 28
   Rpal_3950 4239403 .. 4239428 + -14.7  -3.99324   CCGCGACGTCCGAGC         GCGGCGGGC GCTGAATG GCCCGCCGC          TTTCTGATGATCAGC  93 45
   Rpal_3954 4243776 .. 4243810 +  -6.2  -3.30159   TGGCATCGTCGGCCG     CGGCGCCGTCGGCG AGCACAA CGCAGGCGACGACG     TTCTCGCCCCATTCC  53 391
   Rpal_3962 4254359 .. 4254405 +  -4.3  -2.61681   AGCACGATCGGCGTG GCGCGGCATAATCACTAGCGTGC ATC GCTCGCTCGTCGA-A-GCCGCGC ATTATCACATTCGCC  41 8
   Rpal_3963 NONE
   Rpal_3964 4256320 .. 4256350 +  -7.5  -2.96249   GAAGGCTCTGCGATA      CTGGT-TCGCCCGC CTGC GCGGGCGATGACGG       TCGTTGTTGATGACG  53 221
   Rpal_3971 NONE
   Rpal_3972 4267388 .. 4267415 +  -6.9  -3.72695   TGAACGCTGGCAACT        CCACCGCTGCT CAGGCA AGCAGCGGCCG         TTTGCTGACGCGGGT  61 381
   Rpal_3975 NONE
   Rpal_3976 NONE
   Rpal_3977 NONE
   Rpal_3978 NONE
   Rpal_3979 NONE
   Rpal_3980 NONE
   Rpal_3981 NONE
   Rpal_3982 NONE
   Rpal_3983 NONE
   Rpal_3984 NONE
   Rpal_3985 NONE
   Rpal_3986 NONE
   Rpal_3987 NONE
   Rpal_3988 NONE
   Rpal_3989 NONE
   Rpal_3990 NONE
   Rpal_3991 NONE
   Rpal_3992 4280102 .. 4280129 + -12.7  -3.05463   TAGGTCGAAAATTAA        GGCCACCAGCC CGGCGA GACTGGTGGCC         TTGGATCAAGGGAGT  71 79
   Rpal_3993 4281093 .. 4281104 +  -4.4   -3.5361   TCCACTCCTTTGAAA                GTCA ATAC TGAC                 TTATATAACTCATTG  51 117
   Rpal_3994 4281570 .. 4281586 +  -8.7  -2.52676   GAACGATAAACCGTG              TCCGGCA ACC TGCTGGA              TCAATTCGAGGAGTA  53 204
   Rpal_3995 4282226 .. 4282240 +  -6.4  -3.93963   ACGATGAACGAGTCA               TTAGCG CGG CGCTGA               TTTGTGCATGCTCCT  65 168
   Rpal_3998 4285759 .. 4285778 +  -2.8  -3.62572   CTCGGGTGATCGATC            GCGG-CG AACAGGC CGACCGC            TTTGAGATGCTCCTG  53 225
   Rpal_4013 4300423 .. 4300438 +  -3.2  -3.02144   CGCAAGAAGTAAGAA              CCTGCT GATT ATCAGG               TCTTCCGCGCGCTGG  43 29
        fumC 4302053 .. 4302072 +  -2.1  -3.77832   TCAACTTGCACTTGC            GGCG-TTG TGGTC CGACCGCC            TTATTCGATTTACGG  52 121
   Rpal_4015 NONE
   Rpal_4016 4303023 .. 4303040 +  -9.1  -4.08394   GAGCACTTGGCTGCG             GCGCAGCC TCG GGC-GCGC             TTTTGGGCACGGTCT  75 363
   Rpal_4019 4308895 .. 4308927 +   -12  -3.59979   CGCTTCAGGCATCCG     CTGGCGGCTGCCTTG TCGG TGAGGC-GCCGCCGG      TTTCGACTGCGCCGC  75 227
   Rpal_4021 NONE
   Rpal_4022 4312382 .. 4312403 +  -4.3  -4.74801   GTCTACGTAGGACAG           GCCGGAC AAGGCAAC GCCCGGC            TTTTTAATAGGCTTC  75 400
   Rpal_4023 4313323 .. 4313336 +  -3.7  -3.53012   CCGCCCGCACGTCCC               GGCTG CGGT CCGCC                TTTCCCGCGCCCCAC  51 276
   Rpal_4024 NONE
   Rpal_4025 4315076 .. 4315098 + -17.7  -4.00532   GAGTGAAAACAAAAA           GGCGCGGCC TGATT GGCCGCGCC           TTTGATGTTTCAGGA 100 50
   Rpal_4027 4316529 .. 4316553 +   -20  -5.10933   TTTGATCGGATCGAA          CGCGCGGCCC TCCAC GGGCCGCGCG          TTTTGTTTTGCCTAG 100 52
   Rpal_4029 4320691 .. 4320703 +  -6.2  -3.17392   GGCCGTCTCTCAGCC                GCGC AGGCA GCGC                TTGGCTTCGGCAATC  51 101
   Rpal_4031 4322569 .. 4322593 +  -5.5  -3.30007   GTCGTTGAGTTGAGA          CACTCCCGGGA TTG TCCCGGACGCG          TTGTCAGAGCGTATT  52 273
   Rpal_4033 4324572 .. 4324589 +  -4.7  -3.54919   CAATCCTAAGCTTAG             GAGCGGT GAGC GCCGCCC              TTTACCCGAGTCATT  55 32
   Rpal_4034 4326312 .. 4326361 + -14.3  -2.65354   CATCGAAGCGTCCCA ACGAGTCATTCCGGG-GCGCTCAC GAA GTGAGCGAACCCGGAATGACGGGG TCAGTTTCCGATCAG  74 112
   Rpal_4036 4329039 .. 4329073 + -16.5  -2.88544   CCCCTCAGCGAGTCA    TTCCGGG-GCGCGAGC GCAA GCTCGCGAACCCGGAA     TCTCTGCCACTGGGA  83 121
   Rpal_4045 4341252 .. 4341305 + -10.4  -3.52204   CTGCACGCTTGCTGA GTTGATC-GCGT-GCGGCCGG-CGG CTCAGCT CTGCCCGGCCGCGACGCCGATCCGC TTGATTTCCCACTGC  68 60
   Rpal_4057 4356406 .. 4356419 +  -8.1  -3.72576   CCCGCGCCATCGCTG               CGCTC GGCT GAGCG                TTTCATCCGCACCAC  69 15
   Rpal_4062 4361774 .. 4361798 +  -7.7  -2.52464   CTGCCCGCGTAAGGA          TTGCGCTGCTG CAG CCGCTGCGCGA          TCACTTCGCCGGACA  49 149
   Rpal_4065 4365668 .. 4365726 +  -4.4  -2.61264   CGGTCGACATCGAAG TCGTGCGCCCAGG-CGGCGCGGCCGC GCAGCGTCA GCAG-CGCGCCATCCAGCGCGAACGA CTTGTCGGTCCGCAC  42 278
   Rpal_4067 4369603 .. 4369622 +  -9.2  -3.44051   GTAGTTTCCCGAGGA            GCGCGGCG CTGC TGCTGCGC             TTCTACTCATGCCAG  65 119
   Rpal_4068 NONE
   Rpal_4069 NONE
   Rpal_4070 4373582 .. 4373623 +  -2.9  -3.34398   GGCCAGCAGCGCAAC CAGCGACAGCGGCTG GAAGATGCCGAG CAGCCGCTGCAACTG  TGTTTCACCGCCCGA  46 424
   Rpal_4078 4378338 .. 4378349 +  -2.2  -3.16564   CACCACAAACAACCA                GAGC TTCG GTTC                 TTGATCCCATCAGAG  43 89
   Rpal_4079 NONE
        arsM 4380062 .. 4380100 +  -3.7    -4.731   AGTCCTGGCCGCCGG  CGACACGCGCCCGGTC CTGCTTGC GTCCGCGCGCG-GTGG   TTTTCTTGGTGGCTT  77 378
   Rpal_4084 4383485 .. 4383510 + -12.5  -3.45571   TTAGTTAATTCAAAA         CGCGCGGTCTC ATCG GAGGCAGCGCG          TTGCTGTTTCAGGCC  76 62
   Rpal_4085 4384106 .. 4384127 + -10.1  -3.70076   CCCCGGCCTGTATTG           TCCC-GGCCG TTC CGGCCCGGGG           TTTCGATGCGTTTCG  74 155
   Rpal_4086 4385734 .. 4385769 + -20.4  -3.02829   ACTGATCTCGACACG    CACAAACGCCGCCGGG GAAG CCCGGCGGCGTTCGCG     TCTTCAGAAGATCTG  93 64
   Rpal_4089 NONE
   Rpal_4090 NONE
   Rpal_4092 NONE
   Rpal_4093 4392689 .. 4392729 +  -7.4  -2.72344   TCCTCGCGTCGCCCT CACCCCG-GCCCTCTCCCG CAAG CGGGAGAGGGAGCAGGCCG  TGCTTGGAGCTGACA  52 220
        thiG NONE
   Rpal_4095 4394244 .. 4394283 + -10.6  -3.14931   CTCTCCCGCCTGCGG  GAGAGGGTCGCGGTGAGGG CGA CACGCACCGTG-CCCTCAC  TTCCTCACGAATGAC  64 145
   Rpal_4096 4396339 .. 4396359 + -15.4  -4.67038   ATCCATCTAAGACAT            GGCCGGGC CAAAA GCCCGGCC            TTTTAGTTTTACGAC 100 91
   Rpal_4097 4397577 .. 4397596 +   -15  -4.41047   AGCCATCAACACGAA            GCCCGGCA GCGC TGCCGGGC             TTTTCGTTAGCACCT 100 51
   Rpal_4098 4399096 .. 4399108 +  -3.3  -4.07568   GCGGCGGTCGGAAAA                CGCGT AGA ACACG                TTTTCGGCGAAGCGG  59 259
   Rpal_4103 4402184 .. 4402196 +  -6.2  -3.85698   ATCCCGGTGCCACCG                GCCG CCAGC CGGC                TTTGTGCCGGCGCGC  62 439
   Rpal_4106 NONE
   Rpal_4107 4405177 .. 4405190 +  -3.7  -3.28924   GGTGATCGATAGCGA               AGCCG GCGG CGGCC                TTGTAGCCGGCCATG  47 120
   Rpal_4109 4407363 .. 4407417 + -15.7  -3.13403   GCGCCGACACCGATC GCCGCTC-CCGCGCCGACAGCGCCG TACACGC CGGCGACGTCG-CGCGGCGAGCGGA TGTTGCTGACGCGGC  78 145
   Rpal_4111 4408467 .. 4408483 +  -2.1  -3.74519   GTTTCCGAGGATAAA              GCGGTGC TGC GCAAAGC              TTTCATGAAAGTGTT  52 242
   Rpal_4112 NONE
   Rpal_4113 4410300 .. 4410326 + -17.4  -3.67597   AAGCGCAAGCACAAG         GACTGATCGCGC TCC GCGCGATTAGTC         TTGTTCAATGAGCCC 100 20
   Rpal_4115 4411893 .. 4411942 +  -3.4  -3.73224   GCCGATCCGGCGCGC CGACAGC-TCGAAGCCGCGCGGCG ACAC CGCACCGCGG-TTCGCTGCAGTCA TTTCGTCGGCAATCG  53 520
   Rpal_4118 4416259 .. 4416296 + -22.1  -3.87815   TCGCCTCCAACTTAG   CCTGAAGGCCCGGCTTC ACCC GAAGCCGGGCCTTCGCG    TTTCTACCGCTCGCG 100 49
   Rpal_4119 4417294 .. 4417310 +  -2.2  -3.33815   AGCTTGTCGGCGTGG              ACCATC TCTTC GATGGA              TTCCTTGCGCCAGGT  44 405
   Rpal_4122 NONE
   Rpal_4123 4419079 .. 4419100 + -17.3  -5.28942   CGTCTGAATGCCGAA           CCCGGCCGA GCGA TCGGCCGGG            TTTTTGTTTGCCCTC 100 67
   Rpal_4127 NONE
   Rpal_4128 4422742 .. 4422765 + -18.2   -3.8917   CCTCAAACTGGCTTA          GCTGACGCGC CTCA GCGCGTCAGC           TTCTTGTACTTCGCG 100 231
   Rpal_4130 4424872 .. 4424898 + -19.4  -4.11394   ATCTGAAAAGCAAAA         CGCCCGCAGGTG AGC CACCGGCGGGCG         TTTTAAAGCTGAGAT 100 54
   Rpal_4132 4428066 .. 4428091 +  -6.1  -4.15044   GTCGGCTTGCCCGCC         TCGGTCGGCCGG CCC TCGGCC-ACCCA         TTTCTTCAGACCGCC  66 495
   Rpal_4136 4432437 .. 4432455 +  -4.4  -3.06796   CGTAGCCGCACGGCC             GCCCCTCG CGT CGAAGCGC             TTCACTACAATCCGC  45 36
   Rpal_4137 NONE
   Rpal_4138 4434203 .. 4434222 + -10.7  -4.69549   TCAGAATTTGCGTCA            TGGCCGG CTTGTC CCGGCCA             TTTTCGTTTTGGGTT 100 421
   Rpal_4139 NONE
   Rpal_4140 NONE
   Rpal_4141 4437274 .. 4437284 +  -6.8  -2.82623   AGTAACTCGCCCCAG                 GCAG GGC CTGC                 TCCTTCTCCCCGCGC  49 62
   Rpal_4146 4440547 .. 4440568 + -12.3  -2.52464   CCGTTGCCGAAGGCG           TTCGGCCGC ACAT GCGGCTGAA            TGCGTTAACACGCGC  65 154
   Rpal_4151 4445012 .. 4445034 +  -7.7  -4.07568   CGGCGATCCGGCCGA          GCGGCGTCGC CGCC GCGAT-CCGC           TTTTCGAGCACGGCC  69 181
   Rpal_4153 NONE
   Rpal_4154 4447023 .. 4447052 +  -4.2  -3.06815   TCGCATTGAGCGGTA       ATCTG-CCGGCGT GCAAG GCGCCGGTCAGGA       TGTGTTGACAAGCCT  45 135
   Rpal_4155 4450043 .. 4450077 +  -7.9  -4.07246   GAGCGAAGCGACGAA    GCAATCCAGAG-TCTG TTTA CTGAGCCCTGGATTGC     TTTGCTTTCGGCTCG  70 87
   Rpal_4156 NONE
   Rpal_4157 NONE
   Rpal_4158 NONE
   Rpal_4159 4454031 .. 4454065 +  -5.9  -3.18582   TGCGAGCGAAGCGAA     GCAATCCAGAA GCTCCGTGCACAA TTCTGGATTGC     TTCGTCGCTCCGCTC  51 62
   Rpal_4160 4454969 .. 4454993 +    -7  -3.65201   CATCGCCGGCTTTTG          CGTCGCGGCC TTCGC GGCCGAGAGG          TTGTTGGCGGTGTTG  61 58
   Rpal_4163 NONE
   Rpal_4164 4464155 .. 4464167 +  -3.3  -3.06183   CGTATCCTGTCGCCG                CCTCC CGA GGAGC                TTCCATGACCGTGCA  43 5
   Rpal_4165 4466425 .. 4466448 + -13.9  -4.07568   AATGTGACGGTTTGG          CGATGCCCG CGCGAT CGGGCATCG           TTTTGCACAAAGCCA  90 128
   Rpal_4166 4468623 .. 4468651 +  -2.9  -3.53563   CTCCGTGCTGGCGTT        CTCCGGGACGACG GAA TGACGCTCCGCAG        TTTCGGGCCGCGTCT  49 7
   Rpal_4167 NONE
   Rpal_4168 4473179 .. 4473201 + -11.3  -3.48593   GGCGCGAAGCGAGTC          CGGCGGGGCT GAGC AGCCC-GCCG           TTGTCTGCAGAGCTG  71 14
   Rpal_4170 4474274 .. 4474305 + -10.9  -3.02829   CTCTCTGATCAACGC      CGT-TATGGCCGGG CTTGT CCCGGCCATTCACG      TCTTCGGCGCCTATG  66 59
   Rpal_4172 4478357 .. 4478375 +  -7.4  -3.61715   CGCGCGATGGTACGT             GAAGTCGT CCT ACGACGTC             TTCTTGCCGGACCTG  62 244
        mobA 4480288 .. 4480336 + -12.2  -4.08216   GATGGCCGCGATCTG CGCCAGCGCGTCCGGCGCGG-CG CCAT CGACCGTGCCAAGCGCGCCGGCC TTTTGGGCCGCATCG  83 486
   Rpal_4178 4483721 .. 4483762 + -15.9   -2.6155   TCGCAATTCCGTCAA TGGTCATTCCGGG-GCGCGC GCA GCGCGAACCCGGAGTGACGA CTTGGTATTACGACC  77 42
   Rpal_4192 NONE
        infA NONE
   Rpal_4194 4498612 .. 4498636 + -16.4  -4.20136   GGTTCTGAACCGAAT          GGGGCCGCGC CAACA GCGCGGCCTC          TTTCATTTTGGGCAT 100 50
   Rpal_4197 4500970 .. 4500989 + -16.4  -5.52023   TGGCCGAACAATCAA            GGCCCCGG CGTT CCGGGGCC             TTTTTTGTTCATCGT 100 50
   Rpal_4198 4501811 .. 4501824 +  -2.3  -3.65351   GATCGCCTGGGAACT               TCCCG TTAA CGCGA                TTTAGATACGCCTCA  49 39
   Rpal_4199 NONE
   Rpal_4200 NONE
   Rpal_4201 NONE
   Rpal_4202 4505951 .. 4505963 +  -3.3  -3.07962   TGGAGAAGCTGCGGG                CCAAG TAG CCTGG                TGTTGGAGTATCAAG  43 18
   Rpal_4203 4507437 .. 4507472 +  -2.5   -3.9122   GTCAATTCATAAGAG    GCCG-GTGCGATGG AAATGCAAA CGCTCGCACTCGGC    TTCTTTGCCGCCATC  54 29
   Rpal_4204 NONE
   Rpal_4205 4509886 .. 4509919 + -10.1  -3.73534   GAAATTGCCGTTGTC     GGC-GAGCGCGCGGCC GTA GGCAGCCCGCACCGCC     TTGTTGCTGGGATTG  70 508
   Rpal_4207 NONE
   Rpal_4208 4512818 .. 4512832 + -11.4  -2.81312   GTTCGGCGAGCTGCG               TCGGCG CCA CGCCGA               TCTCCTCGATACATT  63 284
   Rpal_4216 NONE
   Rpal_4217 4523537 .. 4523573 + -13.9  -3.06183   TCTCGGCGTTTGTGA    CGAAGATCATCGACC GATCACA GGTCGATGATCTTCA    TTCGCTCAAGATAGC  75 48
   Rpal_4219 NONE
   Rpal_4220 NONE
   Rpal_4221 4528009 .. 4528030 +  -4.4  -3.12668   GCCGCGAGCGATTGC           GCGCGATCG AGGCA CGGTCG-GC           TTCAGTGTAAGAATA  47 275
   Rpal_4223 NONE
        metH 4534252 .. 4534262 +  -5.4  -3.13343   AGGCTTGTCGCGAGC                 TTCG GCT CGAA                 TTGCGTCGTTCCGAT  48 243
   Rpal_4225 4535953 .. 4535973 +  -4.5  -3.76224   TGAGGCCGGCCAAGT            ACGCGGCGC CGA GCGCGGTGG            TTTCCTGGATCACCG  58 522
   Rpal_4227 NONE
   Rpal_4228 NONE
   Rpal_4229 4539912 .. 4539953 + -12.4  -5.54894   AACTCCGACAGCAAC GCCGCTGTCCTGG--CCTCGC TCC GCGAGCAACCAGG-CAGCGGC TTTTTTTCGTCGGTT 100 241
   Rpal_4230 NONE
        nirA NONE
   Rpal_4232 4544072 .. 4544105 + -19.1  -2.87931   TCCCTCCACGCGTCA     TTCCGGA-TTGCGAGC GCA GCTCGCAAGTCCGGAA     TCTATAACCCCTGCA  91 190
   Rpal_4239 NONE
   Rpal_4240 NONE
   Rpal_4241 NONE
   Rpal_4242 NONE
   Rpal_4243 4557615 .. 4557641 + -19.5  -5.27335   CACCGACCACTGCCA         GCCCCTCGCGA CCCGT TCGCGAGGGGC         TTTTTCTTTGGCCGC 100 50
   Rpal_4244 4559097 .. 4559112 +  -3.2  -4.45945   GCGGCCTGCTGCAGT              GCGG TTGTAATC CCGC               TTTTGGTTGCTGCAT  67 98
   Rpal_4245 4560471 .. 4560496 + -19.1  -4.86731   TCCGATTCTCACCCC         TCCCCCGGCAA GCGA TTGCCGGGGGA          TTTTCTTTGCGCCGA 100 59
   Rpal_4246 4562049 .. 4562085 + -17.9  -3.64822   CAGCACTCAACAACA    AGCAGAAGCCCCGGGCG TCA CGCCCGGGGCTTCGTCG    TTTCGATCCGCCGAT 100 60
   Rpal_4248 4563965 .. 4564003 +  -8.6  -3.28712   CGTTCCGACCCCAGC   CGCCCGTCGCGGCACCCC ACC GGCCTGCCGCGGTGCCCG   TTGTGGCCCGGCGGC  60 60
   Rpal_4249 4566151 .. 4566182 + -10.9  -3.38314   GACGTCCCAACTCTC      CGT-CATGCCCGCG CTTGT CGCGGGCATCCACG      TCTTTAAGGCTTGCA  69 45
   Rpal_4251 NONE
   Rpal_4252 4570288 .. 4570317 +  -8.5  -2.66316   TGCCGAGCGACCAGA       TCGC-GCCCGGCAC CTT GTGGCTGGCAGCGA       TGGTGTCGTCGAAGG  52 103
        ispH NONE
   Rpal_4256 4577051 .. 4577070 + -16.4   -5.4833   TTCCACATTTCAAAA            GCGCGGCC CGCG GGCCGCGC             TTTTTTGTTGAGTAC 100 56
   Rpal_4259 4580788 .. 4580809 +  -2.9  -3.70902   AGCTTGGCGGCGGCG           GCGAAATCG GCGG CGATGTGGC            TTTCCATATCGACCG  53 387
   Rpal_4266 4587591 .. 4587618 + -21.4  -5.45802   GCATCACAATCAAAA        GCCCTCCGGATC GGCC GATCCGGAGGGC         TTTTTGTTTTCACAA 100 57
   Rpal_4279 NONE
   Rpal_4280 NONE
   Rpal_4281 4609446 .. 4609488 + -14.1  -3.19425   CCGTTTCCACGATCT CGGGATTCCGGGTTCGCGCC TAAC GGCGCGC-CCCGGAATGACG TTGCTGAACTTACTT  76 116
   Rpal_4282 4610548 .. 4610560 +  -4.7  -3.01924   CATCGCCCGGCTTGA                CCGGG CGA CCCAG                TATTCCAGAGCGGTC  47 67
   Rpal_4283 NONE
   Rpal_4284 4613263 .. 4613275 +  -6.2  -3.90291   TTATGACCGAGCACC                GCGG GTCGA CCGC                TTTGGTTCACCACGT  62 105
   Rpal_4290 4618487 .. 4618508 +  -3.7  -3.53012   CAAGGTCGGACTGGA           TCTG-GAACG CCT CGTTCACCGA           TTTCGCCGACGCCAG  51 402
   Rpal_4299 4628767 .. 4628799 +  -3.1  -3.69323   ACCTTCGTTGCTCCG      CCTCGGCGTGCAACC GGT GGCGGCGCGCTGTGA      TTTCGATGATCATGG  54 94
   Rpal_4300 4630421 .. 4630448 + -12.1  -3.14881   AGGAGCAGCCGGGCT        GGTG-GTAGCGC CTGCC GCGCTACGCACC        TTCCTCCGCCGCTTC  70 18
   Rpal_4302 4632928 .. 4632974 + -18.6  -3.29144   CGTCATACGGTTTGG CGTCGCCGGTGAGACGCGCAGC GAC GCAGCGCGCCTGATCGGTGGCG TTCTGCACCGACTCC  93 413
   Rpal_4306 4637773 .. 4637796 +  -5.2  -2.80816   AATAGGTTAGCTGAA          GGTGC-CGGGC TAG GCTCGCGCACA          TGTACTACATCAACA  44 115
   Rpal_4307 4638135 .. 4638162 +  -4.3   -3.3782   ACCACAACCATAGCT        CTAATACGTAGA ATTTA TC-GCGTATTAG        TTGCTTACCTGAGTA  48 74
   Rpal_4308 4639431 .. 4639443 +  -3.4  -3.28712   ACCTTGTCGACGAAG                CGTT GCTTG AACG                TTGTGCCGAGCCAAC  46 370
   Rpal_4315 4645344 .. 4645391 +  -7.7   -4.1196   CCAACGGCAGATCGG CC-CGCGCGACCGCCTTCA-CCGC TTC GCGGTTGGCTGCG-TCGTGCGTGG TTTTGAACATCGCTT  69 117
   Rpal_4319 4648139 .. 4648156 +  -6.9  -2.82834   TACGATCAGCGCGCC             GCGATCG GGAT CGAACGC              TGTGATCATCCGATC  50 259
   Rpal_4330 NONE
   Rpal_4331 NONE
   Rpal_4332 4659707 .. 4659726 +  -5.6  -3.02324   CGAAGAAGTCGAAAA            GGTCGAGC AGGA GCTCGGGC             TGTGATTTGCCTCCC  49 1
   Rpal_4333 4660660 .. 4660672 +  -6.9  -3.49186   CAATGCGGCAACCGG                GTGCC GAC GGCGC                TGTATTTTGTCGATG  57 77
   Rpal_4334 4661988 .. 4661998 +  -8.2   -3.0263   GACAAAGAAGCCTAC                 GCCG TAT CGGC                 TCTTGCGAAGATGAT  57 120
   Rpal_4338 4665916 .. 4665936 + -11.1  -3.21099   GTCGAGGGAGATGAA            TTGCCGGGC CGA GCCGGGCAA            TTCATCATCGGGACC  67 118
   Rpal_4340 4667713 .. 4667742 + -17.9  -2.52464   CTTAAGTTGGTCTGA       CGAGCCGCAAGCC CGGC GGCTTTCGGCTCG        TGGGTTCGAGGCCAA  86 36
   Rpal_4342 NONE
   Rpal_4343 4671591 .. 4671609 + -13.1   -5.1675   GTCGCTCAACAAAAA             GCCCCCG GTTCG CGGGGGC             TTTTTTCATGGCTGC 100 60
   Rpal_4348 4674596 .. 4674628 + -14.2  -4.13945   TTGCCTGATCGAATT      TTCAAATGCCCGGG CCTGT CCCGGGCATTTGTG      TTTTCCGCTGCAGGT 100 76
   Rpal_4349 4676173 .. 4676190 + -10.5  -4.60487   ACGCTGATCCGCGCC             GCCGCGC GCGA GCGTGGC              TTTTTGCGGATGATA  93 407
   Rpal_4354 4679253 .. 4679267 +  -2.8   -3.7732   TTAGCCCCTTCGAAG               TGGG CCCACCC CCCA               TTCTTCATATGAACA  54 257
   Rpal_4362 4686656 .. 4686678 + -16.3  -5.33405   ACTGAACGAACGAAA           GGCGCGGGA TCACT TCCCGCGCC           TTTTTCTTTGCTGCC 100 54
   Rpal_4363 4687202 .. 4687212 +  -4.6    -2.867   GTCCTGGTGCCGTCG                 CCGG GCT TCGG                 TGTCATAGTGTTGCT  46 137
   Rpal_4364 4688177 .. 4688193 +  -2.9  -3.15544   TCCGGAAATCAAAAG              TCCGACG GCT TGTCGCA              TTCCTCGCAGTCACG  44 103
   Rpal_4365 NONE
   Rpal_4366 NONE
   Rpal_4367 4692303 .. 4692348 +  -2.3  -3.92324   CTGGCGGCAGCATCC CCGCTCACGGCATCGACGC-CG AGG CGCGCGATCATGGCGCGGGCGA TTTCGTCTTCGCCCA  56 119
   Rpal_4369 4696045 .. 4696057 +  -4.8  -3.16881   AACAGACCACCTCGA                CCGA ACTTA TCGG                TTGATGCGGTCAGTC  48 136
   Rpal_4370 4698158 .. 4698216 +  -5.1   -3.4243   GTACCGCGAATCTCC GCGCCCCTCTCGTCATTCCG-GCGCGCGC GTA GCTCGAACCCGGAATGACGGG-GTGAAGC TGTTAGTTTTGCGTC  53 61
        gcvT NONE
   Rpal_4374 4703756 .. 4703771 +  -2.4  -3.27525   AGATTTCCGAGCAAC              CTGCCT TTGC GGGCCG               TTGCATTTGACGAGG  45 154
   Rpal_4375 4706796 .. 4706835 +  -8.5  -3.01712   GAGCGCCGCCCTTAC  GGA-GCGTCATCGCCGGG CTCGA CCCGGCGGCGATCCATCC  TCTTCAAAGGAACCG  57 120
   Rpal_4378 4711179 .. 4711197 +  -2.3  -3.35679   GCTGTGAAGACCACG            CCGGCCGC CTCA GCG-CAGG             TTCTGGATGCCCCAC  45 34
   Rpal_4380 4711920 .. 4711956 + -10.2  -5.28176   GAGTTTCGACCGTGA   C-CGGAGCCCCGAAC ACGGCCTC GTTCGGGGCTCCTTG    TTTTTTGTGGGTGGA 100 129
   Rpal_4381 4712615 .. 4712639 + -19.3  -4.19238   AGCAAACCAGCACAG          GCCGCCGGCGT CCG ACGTCGGCGGC          TTTTGCCGTTCAGGA 100 55
   Rpal_4382 4713437 .. 4713485 + -17.5  -3.01924   CATCGCCGGCTCGCG CTGCAGCGTCGCCATCATCGTCG CAT TGGTGATGCTGGTGACGGTGCAG TCTTCGAGCGCAATC  82 443
   Rpal_4386 4715202 .. 4715218 +  -5.7  -3.29958   GCGTTTGGGCGGATC              GTCGCGC TCG GCCCGGC              TCTTGGTCTTCTTCA  51 281
   Rpal_4388 4717849 .. 4717861 + -10.5  -3.17075   AAGCGCTGATTATTC                CGCGG CTT CCGCG                TTCAGTTCCGCCGAA  64 32
   Rpal_4391 4720197 .. 4720213 +  -3.5  -4.19238   CGCCTTGCTGGCGCC              CTTCGGC TTC GCCGTCG              TTTTAGCCTTGACCG  65 271
   Rpal_4393 4721605 .. 4721636 +  -5.7  -3.90291   CCCGGTTCCGAAAAT      CCGCCGCCCCC CTTGCCGATC GGTGGCCGCGG       TTTACTTCCGCAAAT  62 48
   Rpal_4394 4722750 .. 4722762 +  -6.9  -2.59748   CAGCAGATGCCGGCC                CGGCT TGA GGCCG                TCGATTGTGAGGCTC  47 450
   Rpal_4396 4723632 .. 4723686 + -10.8  -3.41878   GCAGCGCACCTGCCC CA-AGCGGTGATTCCGGG-GCGCTCGC GTCA GCGAGCGAGCCCGGAATC-CCGAGATG TTCTGCGTTGAACCG  71 58
   Rpal_4400 NONE
   Rpal_4401 4727108 .. 4727126 + -13.1  -3.74749   TCCGAACGACGACTG             GCCCCGC CTTGC GCGGGGC             TTTGGCGTTTGTGCT  81 60
   Rpal_4402 4727621 .. 4727676 + -19.9  -3.53012   GGGGCGCGCGTGAAA CGCGCGAACCCGGAATCTCGAAGTGG TGTGC TCGGATC-AGATTCCGGGTTCGCGCG TTTCACGCGCGCCCC 100 70
   Rpal_4412 4737732 .. 4737761 +  -2.9  -2.50381   GCCGCCCGAAGTCGC      CTACGTGAGCGCC TCGACC GGC-C-CGCGTAG       AGTTTTCATCAGTTC  39 18
        fliP 4738487 .. 4738524 +  -3.3  -4.00782   TGGTGCAAAGCTACA   CCGGCGGCGGATAGTCTC GCC GAGA-TCGCCGCTGCTGA   TTTCTCCTGCTCTCC  58 12
   Rpal_4415 4743397 .. 4743421 +  -2.6  -4.25283   AGGTCGCTCTGAAAG          CGGCCGCTCG TCTCT CGCGAGGCCC          TTTTCCTGAACAGGT  62 218
        flgF NONE
        flgG NONE
        flgA NONE
        flgH 4752274 .. 4752318 +  -9.2  -3.61517   CGCGGTCAGGTGTTC CAACGCGGCCTCC-TCCGG CTCTCCCT CCGGACGGAGGCCGCGGCC TTCTTAAAAGCGACT  68 88
   Rpal_4428 4757576 .. 4757590 + -11.4  -2.53015   GATCGTAGTTGTATC               GCGTCC GGG GGACGC               TACGTTCCGCCGTGT  62 146
   Rpal_4429 4758235 .. 4758261 + -10.1  -2.71712   TTGCGTTGACGGTCG         CGAGCGCGCAG CTCAA TTGCGCGGTCG         GTTTCGGAGGAGGCG  57 328
        flgI NONE
   Rpal_4433 NONE
   Rpal_4434 4761324 .. 4761341 +  -4.1  -3.76125   CGCGCGAATTCGCAC             GC-CTGCG CGA TGCAGAGC             TTTCGATTCAAATCA  56 84
   Rpal_4435 4761842 .. 4761871 +  -9.2  -2.52516   GGAATGAGACCGGAT       CTCCCG-GCCCGT CGGTT GCGGGCGCGGGCG       CTTCGTGCTGGGCAA  56 50
   Rpal_4439 4768633 .. 4768647 +    -7  -3.16742   ATTATTGAACAGCAT               CAGCCG CAT CGGCAG               TTCGTGCCGCTTGAG  52 426
   Rpal_4456 NONE
   Rpal_4457 4794446 .. 4794462 +  -2.1  -4.10429   GCGGGCACTGGCGAG              CTGAGCC GCC GCCACAG              TTTTCCGAGCTAATT  57 22
   Rpal_4461 NONE
   Rpal_4462 4799647 .. 4799664 +  -3.3  -3.09516   GCGGCTACCGGCATC             CCGCATC CGCC GGTGCAG              TTCGATCATGAAGGA  44 303
   Rpal_4464 4800615 .. 4800638 + -15.2   -3.6501   GTTGAAAACACCAAA          GGCCGCCCGG AAAT CCGCGCGGCC           TTTGGCCTCATTGTT  86 63
   Rpal_4466 NONE
   Rpal_4467 4804926 .. 4804949 + -12.4  -4.09685   CCAGGCAAATGAAAA          GAGCGCCCTC CGTG GAGAGCGCTC           TTTTGCAAGCTCAAA  83 103
   Rpal_4471 NONE
   Rpal_4472 4810605 .. 4810638 +  -5.2   -3.4252   CAAGATCACCGAGCG     ACTGTAATGGCGGC TTCGGC GCGGCCGTTACGGA      TTCTCATCACTGGAG  53 19
   Rpal_4473 4811838 .. 4811862 +  -6.4  -3.14931   GATCGCCGCAATCGG         CGTCGCCGGAA ACAA TGCCG-CGACG          TTGCTGCCGAGTCCG  51 269
   Rpal_4476 4814832 .. 4814862 + -11.9  -3.06183   CAAACTCATACGAGA      GAC-TGTCGCGCTG CAGA CCGCGCGACACGTC       TTCGATAGCAATAGC  68 153
   Rpal_4479 NONE
   Rpal_4480 4822220 .. 4822240 +   -14   -4.8622   GCCATAACGATCCAA            GCGGAGGC CTCGC GCCTCCGC            TTTTTCATTGCCCGA 100 68
   Rpal_4481 4824211 .. 4824224 +  -5.2  -3.10192   TACCCGGATGCAACT               GCGC TCGTCC GCGC                TATAGTTTGGTTTTC  47 149
   Rpal_4482 4825352 .. 4825389 +    -9  -3.17051   GCGGCGGGCGCGGTT   GTTCGGCGCGGGCGGCG GCCGG CGGCGCC-GCGGCGGGC   TGTTCCTGCTGAGCG  59 242
   Rpal_4486 4829636 .. 4829650 +  -4.2  -2.78384   GCCGAAGGTGAAGCC               GTGAAG TAA CTGCAC               TGTGGTGAGCACCGG  41 283
   Rpal_4488 4832066 .. 4832078 +  -3.3  -3.85864   GCGCATGAGCCAGGC                CGAGA AGG TCGCG                TTCTTCTCGTAATCG  56 1
   Rpal_4494 4837076 .. 4837098 +  -6.9  -2.71364   GCAGCGACTTGATGT           AGGCCGCGA TCGCC TCGCGGTCA           TCCTTGCCGAGCTGC  48 98
   Rpal_4499 4843638 .. 4843650 +  -6.2  -3.14132   GCGGCTTGATCAGCC                GCGC AGCAG GCGC                TTGATCCAGCGCGGC  51 32
   Rpal_4504 NONE
   Rpal_4505 4851102 .. 4851121 +  -4.4  -3.73072   GATCTGCGTGGTGGG            TTCATGTTC GGC GAACA-GAA            TTTCGTGCAACCGTT  55 227
   Rpal_4509 4856629 .. 4856649 +  -8.1  -3.54459   TGAGCCCTTCGGCTT            GCGCCGGAC GCG GCCCTGCGC            TTTACCAGGGCTTCA  65 38
   Rpal_4510 NONE
   Rpal_4511 4858130 .. 4858165 +  -4.4   -3.6608   TGCCCCACGGCAGCA    CCGGCTGCAGCCCGCG GCCC TGCAGCCAACGGCCGG     TTTCAATCCAATCCT  55 342
   Rpal_4513 4860014 .. 4860042 +  -2.9  -3.28924   GGCAAGGACTCCGCC        GAGACGCACGC CTTCCTC GCGCGCGACCC        TTGTCCGACGCCGTC  46 89
   Rpal_4514 NONE
   Rpal_4515 4863060 .. 4863077 +  -2.7  -3.08679   TTGAAGACTGCACAC             TTCATGC TTGC GGATGAA              TCTTCAATGCCGCAA  41 448
   Rpal_4517 4869204 .. 4869219 +  -2.5  -3.74693   GTTTGGCATCGTACA              G-CGCC TGGTC GGCGGC              TTTCATCAGATCCGA  51 148
   Rpal_4519 4871034 .. 4871054 +  -7.5  -3.53444   CCTGCGAGGCCCAGC            GCGCCAGCA GCT TGTTGACGC            TTTCGCGAGACATGC  60 157
   Rpal_4524 4877221 .. 4877233 +  -3.3  -3.66356   CCGCCGGTCGACCGA                TCCGG TCC CGGGA                TTTCCCATTCGGCGT  51 187
   Rpal_4525 4879402 .. 4879434 + -15.7  -3.51934   ACTCCGATCGTTCCT     CGTC-ATGGCCGGG CTCTAT CCCGGCCATCGACG      TCTTTGTCGCGCGGC  85 80
   Rpal_4527 4881700 .. 4881753 + -18.4  -2.79574   ATCAAGCCTTTGAGG ACATTCAGTCGCCAGCCGTGACGGGCG CCT CGCCCG-CACGG-TGGCGA-TGGATGA TGATTGGTGGCTCTG  86 111
   Rpal_4528 4882398 .. 4882412 + -12.8  -3.29704   CCGACCTGCTGGTCG               CCGCGG CCA CCGCGG               TCTATTTCGTCGCAC  74 154
   Rpal_4532 NONE
   Rpal_4533 4884278 .. 4884296 + -10.2  -3.71527   CAGGCTCGGCTGTAT             GGCTGGGC GGC GTCCGGCC             TTTAGATAATTGCGA  74 49
   Rpal_4534 NONE
   Rpal_4535 NONE
   Rpal_4536 NONE
   Rpal_4537 4887435 .. 4887454 +  -9.2  -3.09516   AATGCCTGCATTCCG            CGCCAGCC ATGC GGCTTGCG             TTGGATCCTCCAGAG  60 335
   Rpal_4538 4890007 .. 4890020 +  -3.7  -2.78816   AAGAAAGGCCATCGC               CGCCG GCCC CAGCG                TATCGTCGAGCATCG  41 428
   Rpal_4540 NONE
   Rpal_4542 4893814 .. 4893827 +  -3.7  -3.00121   TGATCCCGTGCGGAT               GCGCG ACGT CGAGC                TCTGATGTTTCTGAT  45 7
   Rpal_4543 4894298 .. 4894335 +  -6.1  -3.21912   GCGAGCGCTTCATTC   GAGAATCCCGGGTG-TCG CTC CGTTCACCCGGGCTACAC   TTGCTGGGTTAGGGC  51 81
   Rpal_4544 4895214 .. 4895261 +   -36  -3.05935   ATCGAACGATCGCCA CCAGACAACGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCGTTGTCTGG TTGGATGGCCGCTGT 100 218
   Rpal_4548 4901181 .. 4901217 +  -2.8  -3.85817   GTTATCACAGCGTCG   GCCGCGGCGACGCGTAG TTAT CTGC-CGGCGCTGCTGA    TTTCTCAACGCCGCT  56 9
   Rpal_4549 4902728 .. 4902777 +  -6.4  -5.06414   CATACTCCCTGCGGT GGTTATGGATTCCGGGCTCGCGCC TAGC GGCGCGC-CCCGGAATG-ACGGCC TTTTTGTTGAGAGCG  86 107
   Rpal_4550 NONE
   Rpal_4551 4904606 .. 4904618 +  -4.7  -3.31144   GCTGACCATGAGGGC                GCGGC GAT GACGC                TTCTGAAGGTCAGCG  50 16
   Rpal_4552 NONE
   Rpal_4553 4906089 .. 4906116 +  -7.7  -3.14647   TATTTGGGGATCGAC        TGACGGCGATC GATCAG GAACGTCGTCA         TTCCCTCTGCTCCGT  56 23
   Rpal_4560 4912856 .. 4912869 +  -2.3  -3.61715   TCTCGGAGTTTTGGA               CCATC ATGC GCTGG                TTGTTCGGAGGCATC  49 76
   Rpal_4561 4913833 .. 4913857 +  -6.5  -3.36273   GATCGGTGTGGGTCT         G-GGCGATCA GCGCAG TGATCGCCGC          TTCCTGTTGCCGCCG  55 410
   Rpal_4563 4915428 .. 4915438 +  -6.8  -3.11316   GCTACCGATCGCTGA                 CAGC TCC GCTG                 TATATTAACTAATCG  53 157
   Rpal_4564 NONE
   Rpal_4565 NONE
   Rpal_4566 NONE
   Rpal_4567 NONE
   Rpal_4568 4920591 .. 4920608 + -11.3  -2.71712   GAATGGCTGGAGGTG             TGAGCCG CGAG CGGCTCA              ATTTCGGCAAAGCAG  63 23
   Rpal_4569 4921362 .. 4921375 +  -3.8  -3.21395   CGCCAGTAGAAAGAT               CGAG AAACAC CTCG                TCTTATCGCGGCCGT  47 50
   Rpal_4570 4923388 .. 4923418 +  -2.5  -3.73336   ATCGGCGACGCCACG      GCAACGATCTGGCG CCGC CGCTAAACCGT-GC       TTGTTGCATTGCGAT  52 2
   Rpal_4571 NONE
   Rpal_4572 NONE
   Rpal_4573 NONE
   Rpal_4574 NONE
   Rpal_4575 4930083 .. 4930121 +  -5.9  -3.68351   AAACAACCGTCATCC  CCCG-CGCATGCGGGGGAC CCA GTACGCCGCA-GCGTCGCG  TTTGGATCATCCGCG  60 138
   Rpal_4576 4931349 .. 4931375 +  -2.8  -5.00616   ACGACCCACCTCAAG         CGCTTATGCCTG CTT CAGGCAAGTACG         TTTTTTGGGGAAGAG  78 292
   Rpal_4577 4933537 .. 4933559 + -10.4  -2.60496   GCGCCCGGCGCAACA           CCCGCCCGAG CAG CGCCGGCGGG           CTATTTCGACCAGAC  59 40
   Rpal_4579 4935996 .. 4936016 +  -3.9  -3.01712   CGCAACGTCACGGAC            CCCGCTGAA CAC TTCAGCGCA            TCTTGCGAAACAGGA  45 18
   Rpal_4580 4936644 .. 4936654 +  -5.4  -3.03635   GCGAGAGCTCAGCAA                 TCCT TCG AGGA                 TCTTCAAGAGATTTG  47 142
   Rpal_4581 NONE
   Rpal_4582 NONE
   Rpal_4583 NONE
   Rpal_4584 4942305 .. 4942316 +  -3.6  -2.56715   GTCCGGAAATTTCTC                GGCT ATTC GGCC                 TGAATTCATCGGAAT  39 11
   Rpal_4585 NONE
   Rpal_4586 NONE
   Rpal_4587 NONE
   Rpal_4588 4947122 .. 4947138 +  -2.9  -3.08812   TCATCCCGCGATCGA              TCGGATT GAG GAGCCGA              ATTTGTTAGCCGCCC  43 53
   Rpal_4589 NONE
   Rpal_4590 4949303 .. 4949317 +  -2.8  -3.01422   TCTCCTACGCGATGC               GCGT GATGCAG ACGC               TGGTTTCTGCAAATG  43 98
   Rpal_4591 NONE
   Rpal_4592 NONE
   Rpal_4593 4954899 .. 4954910 +  -3.6  -3.57144   CTCCGCCGGATTGCA                CCGC TGAC GTGG                 TTTCGGCATGAAGCC  51 19
   Rpal_4594 4956250 .. 4956260 +  -8.2  -3.55444   GATTCTGGGTGCGCC                 CCGG ACA CCGG                 TTTGCGACGTCGAAA  65 117
   Rpal_4596 NONE
   Rpal_4597 4958574 .. 4958607 +  -3.7  -3.53811   GACCAACATGGCCCC     GCTGCGCG-GCTGGGG GCC CCAAGGCATGCGTAGC     TTTGCGCCGCATGGC  53 273
   Rpal_4601 4962203 .. 4962217 +    -7  -3.63694   AAGCGGCGATAGGCG               ACGCCG GTC CGGCGC               TTCTTGCGGATCGCT  61 234
        carB 4967629 .. 4967652 +  -6.6  -2.82681   CCGCATTGGAATTGT          TCTCTCCGGC GTTT GCCGGAAAGC           TCTGGTGCCGTTTTG  50 101
        greA 4968280 .. 4968297 +  -9.8   -5.4505   CGACGGGACGAAAAA             GCCGCG CTTCGC CGCGGC              TTTTTTGTTGCCCGA 100 52
   Rpal_4607 4968867 .. 4968893 + -13.6  -3.59979   AGCACTGAAAAGATT         GCAGCGGCGGCC TCA GGTCGTCGCGGC         TTTCAACTCCAGCGG  81 50
   Rpal_4609 NONE
   Rpal_4610 4971706 .. 4971726 + -11.8  -5.60993   GCCAAAGACCTTAGA            CCGGGCTC TTCGT GGGCCCGG            TTTTTTTCTGCGCAA 100 216
   Rpal_4618 4980538 .. 4980548 +  -2.4  -3.55444   GCCGGAAAGCACCGT                 CGCG GAA CGCC                 TTTCGACGCTCCACC  49 213
   Rpal_4619 4981138 .. 4981170 +  -9.2  -2.76249   TACGATGAAAACGGA     TTGCCAACGTGATCG TCAT CGA-CACGTCGGCGA      TCATTGCGATCTTTC  57 14
   Rpal_4620 4981580 .. 4981593 +  -3.1  -2.78679   TTCCCCCTTGCTCCC               CGCCGA CAA TCG-CG               ATTTAGCTGGCGCGG  40 55
   Rpal_4621 4982564 .. 4982586 + -10.4  -4.06419   TCCGTTGACCCGCCA           CGCTGACGCC CGG GGCGACTGCG           TTCTTTGTCGCGCAA  78 245
   Rpal_4623 4983973 .. 4983991 +  -8.8  -3.40788   AAAGAAGCAATCCAG             TCCAGCGC TCG GAGCTGGA             TTGCTTCGCTTCGCT  63 107
   Rpal_4624 4985080 .. 4985093 +  -5.9  -3.70674   GGCCGCCCGGCCGAT               GCGCG GAGT TGCGC                TATTTTGAATGCTCC  60 157
   Rpal_4625 NONE
   Rpal_4626 NONE
   Rpal_4627 4989254 .. 4989284 +  -6.1  -3.10236   CATTAGAACACCGCC      GC-GCCGGCGGATC GCGC GATTCGCTTGCAGC       TATTCGAATTGCATT  49 104
   Rpal_4628 4989726 .. 4989742 +  -2.1  -3.33737   GCAGCGCGAACGCCT              CGCGGTG ATA CGCTGCC              TTCTCCGCCTTGGTA  44 186
   Rpal_4630 NONE
   Rpal_4631 4992140 .. 4992168 + -11.5  -2.87564   CCTCATCCCGAGGAG        CCCGGCGAAGCCC TGA GGGCGAAGCCGGG        TGTCTCGACGGATGA  64 73
   Rpal_4632 4993880 .. 4993908 + -10.9   -2.8194   TCCGACCTGCCGGAA        TGAGGCCGGTCGC CAC GCTGCCGCCCTCA        TCTCGTGGCTGATTG  63 23
   Rpal_4633 4994764 .. 4994776 +  -6.2  -3.55622   GTACGACGTTGGCAC                GGCG CTGCA CGCC                TTTGCCCACCTTGCG  57 152
   Rpal_4636 4998411 .. 4998455 +  -7.9  -2.55544   TCATTGCGAGCGAAG CGAAGCAATCCAGCCCACTC AATATC GAGCTG-CTGGATCGCTTCG TCGCTTAGCTCCTCG  51 100
   Rpal_4641 NONE
   Rpal_4642 NONE
   Rpal_4643 NONE
   Rpal_4644 NONE
   Rpal_4645 5007329 .. 5007344 +    -6  -3.02144   GCCTGCTTCGCGTGC              GCGCGC CGGG GCGCGG               TCTTCCAGCGCATCG  49 86
   Rpal_4647 5011298 .. 5011308 +  -5.4   -5.4505   GGCGTCAACAAAATA                 TCGA AAA TCGA                 TTTTTTGTTGACGGG 100 63
   Rpal_4648 NONE
   Rpal_4649 5012171 .. 5012184 +  -9.5  -3.55444   AGGGACGCCCAGAGC               GCCGC AACA GCGGC                TTTGCGCGATGGAGA  68 115
   Rpal_4650 5013561 .. 5013584 +  -2.2  -3.08798   CTCGACCAAGTAACG          CTCGCTACGC GGCG GCAGCGCGAG           TCTTGCGTCGAGCCT  41 28
   Rpal_4652 5015010 .. 5015035 +  -6.1  -3.61398   GATCGGATGCGCGGA         CGTGGC-GCAGC AGC GCTTCGGTCACG         TTCTTCAGCACCACG  56 302
   Rpal_4654 NONE
   Rpal_4655 5017277 .. 5017287 +  -2.4  -3.28791   CGCCCTCTAGGTGGA                 GGGC CTG GCCG                 TTGTCGGCCCCGCCT  45 113
        rpsU 5017642 .. 5017674 + -17.1  -3.93237   GAAACGAACTGAGTT      TGAAGAACGCGGGCC CCG GGCTCGCGTTTTTCG      TTGTTGCTTATTTCG 100 58
   Rpal_4659 5019807 .. 5019828 + -18.7  -4.13995   GCCGAAAAACAAAAA           CGCCCGGCC TTGC GGCCGGGCG            TTTCGTTTCTGGCAA 100 156
   Rpal_4666 NONE
   Rpal_4667 5028148 .. 5028169 +  -2.8  -4.09685   GAAACGGCAGCCCTC           GGAACCGC TGATTC GCGGAACC            TTTTGAACCGTGGCG  58 91
   Rpal_4668 5030656 .. 5030677 + -15.1  -3.99494   ATTGAATGTTATCAA           GGGCTCGCC GCGA GGCGGGCCC            TTATTGTTAACTTAG  95 77
   Rpal_4669 5032578 .. 5032598 +  -9.6  -5.61881   TCCGATCCAAAAAAA            CGCCCGGG CTGGT CCCGGGCA            TTTTTATTTTTAGCG 100 55
   Rpal_4672 NONE
   Rpal_4673 5035919 .. 5035932 +  -3.7  -3.66178   TTGAGCAGCTTCGAC               ACCGG GCAG CCGGC                TTTGGCCTTGGCGGC  54 304
   Rpal_4678 5039408 .. 5039426 +  -4.4  -2.81291   GGTGCTGAAGCAGAA             CGCCCGCA AGC TGCTGGGG             ATTTGAGCTTGTCAC  42 1
   Rpal_4679 5040461 .. 5040476 +  -7.5  -2.52464   GCCCTGTGCTCCTTT              GCGGC ATATCG GCCGC               TCGATTGCCGGCCCG  50 48
   Rpal_4680 5041007 .. 5041024 + -14.1   -2.8507   CCGTGAACATGACAA             CGGGGCC CGCG GGCCCCG              TCATTGCTTGCATCA  74 35
   Rpal_4685 5045461 .. 5045471 +  -2.4  -3.40622   CAGCTGACCGCCTCA                 CCGC CTC GCGC                 TATATTTTCAAAATG  47 58
   Rpal_4686 5046004 .. 5046032 +  -3.7   -3.4052   TGGTCGGCTGGGCGG        CGAGCAGGACGTC GTT GATCACCTGCTCC        TTGGTTAGGTTACGC  49 312
   Rpal_4691 5050469 .. 5050491 +  -9.1  -5.06414   AGAGCGACTGACGAA          GGGCCG-GCG CACG CGTTCGGCCC           TTTTTGTTGCGCCGA 100 77
   Rpal_4697 5058111 .. 5058136 + -19.1  -3.66908   TGTTACTTCGCTACA         GAACCTCCCCC ACAA GGGGGAGGTTC          TTGCTTTTGGAGCGC 100 54
   Rpal_4698 5058497 .. 5058516 + -12.1  -5.63517   GCAGTGAATCGAAAA            GCCCCGG CACGCA CCGGGGC             TTTTTTGTTTGAGCA 100 49
   Rpal_4702 5061904 .. 5061916 +  -9.1  -3.05384   CACAACCGGCTCACA                GGCGA CGA TCGCC                TTCGGTGCCAAGGCC  57 210
   Rpal_4705 NONE
   Rpal_4706 5064481 .. 5064509 + -19.7  -4.00532   TCGCGAGCAGATCGA        GATCTGGCCGAGC GTC GTTCGGCCAGATC        TTTGCTGTTTGCGCG 100 135
   Rpal_4709 5069146 .. 5069156 +  -2.4  -3.91084   ACCCTCGCGTGCCTG                 CGAC GAC GGCG                 TTTCGTTGAAGGTGG  56 406
   Rpal_4711 5071605 .. 5071643 +  -6.1  -3.53091   TCCGCGACACTGCCT  TCACGGTCGCTGA-GCG CTCGACC CGCTTCAGC-ACCGCGA  TTTCACCGAAGAAGT  56 224
   Rpal_4714 5074063 .. 5074078 +  -4.6  -3.85698   CGAACGCACTGACCG              CCGCAG CCGG CTCCGG               TTTGTCGAGCGGCGA  58 146
   Rpal_4718 5077741 .. 5077754 +  -5.2  -3.21276   GAGATCGCGGCACAT               CCGC AGCATC GCGG                TGTTCTCGCGCAGCA  49 165
   Rpal_4721 5083049 .. 5083065 +  -9.4  -2.52464   AGGTCGATCGCCACG              GCGCGA CGTGA TCGCGC              TGCGTTCCGACCACG  54 339
   Rpal_4724 NONE
   Rpal_4725 5087462 .. 5087488 + -14.4   -2.7119   TTTATGTGGCCCTGA         CAGCGGTGGGCG CTC TGCCTGCCGCTG         GTTGTGATGTTGCGT  75 60
   Rpal_4726 NONE
        fixJ 5089764 .. 5089779 +    -4  -2.87051   ACACTATTCGCAGCG              CTCATCG GTG CG-TGAG              GTTTGGTAATGCCGA  44 87
   Rpal_4728 5090164 .. 5090206 +  -8.9  -3.67878   CCGCCCTCGAAGAGA GCGGCGCCGCAGCCTGAGC GCACG GCGCAGGCTCCCTCGCCCC TTATCTTAAGATCCT  65 9
        fixK 5091127 .. 5091146 + -13.6  -3.49232   CGGATCGGACAGACA            GGCCACCA GCAA TGGTGGCC             TCTTCTGTTTGGGCC  79 81
   Rpal_4730 5092874 .. 5092889 +  -6.1  -3.14132   CGGCTACGGCGCCAT              CGTCG CGGCAA CGACG               TTCATCAGGCCAGCC  51 191
   Rpal_4744 5109457 .. 5109471 +  -9.2  -3.28712   TCGTCCCCGATTACC               CGGGGC CAA GCCCTG               TTCTGCGGGCGCGAG  63 62
   Rpal_4745 5111098 .. 5111123 + -11.8  -3.18199   TTGATTCCATTGACC         GCCGCCGCAC TGCGGC GTGCGGCCGC          TTGCGTTCGGAGTTG  70 82
   Rpal_4746 5113026 .. 5113076 +  -5.9  -3.41795   CCCTTCTCTTGACCT CCACGTCATTCCGGG-GCGCGGCC GAAC GGCCGCGAACCCGGAATCCAGCAG TTATCGTGCCCGTTT  55 47
   Rpal_4747 5113717 .. 5113728 +  -5.8  -3.34043   TCCGGCGGCGACACG                CTGC TCGG GCAG                 TTGTGAACTGATAGC  52 8
   Rpal_4748 5115479 .. 5115507 +  -2.2  -4.59773   TCCATCCGATTGTTG        GTGGTGTGGGGC TCCCC GCCCTTCAGCTC        TTTTTCGACGTCGCC  70 460
   Rpal_4752 5118681 .. 5118724 + -14.6  -3.21416   CAGGCGGGCGACCCA GTATTCCAGAGCGCGCGTTG CTGA CCGCGAGCTCTCTGGAATAC TTGATCCTCCGCCTG  80 70
   Rpal_4755 5123158 .. 5123175 +  -4.7   -3.4811   GCTCGGCACATGGAA             GCGCGGC CACG GTCACGC              TATTGTTCTGCGCAG  53 328
   Rpal_4756 5124015 .. 5124036 +  -2.3   -3.8211   CGGAATGATCGTGCC           CTGCG-TCAA AAT TTGATCGGAG           TTATTATGCGTCAAG  52 204
   Rpal_4757 5124539 .. 5124549 +  -3.2  -3.30218   CGGGTGACGCCTTCG                 GCTA GCC TGGC                 TTACGTTCTCTTGTC  46 97
   Rpal_4758 5125571 .. 5125591 +  -8.9  -2.57132   CTCCTCGACCAATTT            GACGTGGCG CGA CGCGGCGTC            CTTCTCAGCGACGCC  52 371
   Rpal_4760 5127910 .. 5127961 +  -6.2  -3.54424   CCGCCACCCTGACCG GCGCCCGGCTGTCGCGATAGCCGG GCGG CCGAGAACCGCAGCATCCGGGAGC TTTCAGCCAGTGGGC  57 6
   Rpal_4761 5128677 .. 5128705 +  -8.8  -2.92293   CGGACGGCCGGCGAG       GTGCGCGGC-GGT CATC ACCAGCCGCGCGG        TGTGGTCTTCGAATT  54 113
   Rpal_4763 NONE
   Rpal_4764 5130898 .. 5130924 +  -2.9  -2.75844   CGAGGACGCCTGCCG        CGTGCTGTGACG CGGC CG-CTCAACACG         ATTTCAGATCAGGGA  40 16
   Rpal_4765 5132224 .. 5132239 +    -6   -3.8211   CATCTCGTCGAAGAT              CCGGCG CTCG CGCGGG               TTCTTGTAGATCACG  62 496
   Rpal_4767 NONE
   Rpal_4768 5134249 .. 5134261 + -10.5  -4.56597   AGCGTGGACGCGATC                CGCCG CAG CGGCG                TTTTTCCGCAGCGCG  95 46
   Rpal_4769 5135126 .. 5135137 +  -2.2  -4.62069   ACGCATTGATCGAAG                TCTC TCAG GAGG                 TTTTTACAATGGCAG  68 341
   Rpal_4770 NONE
   Rpal_4771 5135543 .. 5135581 + -14.5  -4.78848   TCGAAGCTGACAAGA   CGCCCGTCGTGGCCTCT CGTGC GGAGGTCCCGGCGGGTG   TTTTGTATTTGGCGG 100 54
   Rpal_4772 5136226 .. 5136248 + -18.4   -4.4078   CACGCTTCATCGCCA           CGCGCCGCGG CCT TCGCGGCGCG           TTTTGATTCGGAGGA 100 50
   Rpal_4776 5141506 .. 5141526 +  -3.2  -3.34398   TAGCGGCGCGACGAT            CGCTGC GACAGGCCA GCGGCG            TATTTGGCCCCACCC  46 38
   Rpal_4777 5142431 .. 5142461 +  -9.7  -3.40403   ACACGCACGTTCGTC      GCCGCGCATGCTCGC GAT GCGTGCA-GC-CGGC      TTGTGATCCGCGCAA  65 40
   Rpal_4778 5143971 .. 5143989 +  -4.4  -3.90744   AGCATGCGCAGATCG             CCGGCGAC GTG GTAGCCGA             TTCTTTGCCGCGGCC  58 492
   Rpal_4780 5145175 .. 5145217 + -15.4  -2.99471   GCGGCATGCAGCACT TCACCGGCCGCGGCTCCGGT GCC GCTGGCGCCGTAGCCGGCGA TGTCTCTCAAGATCC  81 132
   Rpal_4782 5145692 .. 5145715 +  -6.6  -3.81146   TATGAGTCCGAAGCG          ACGAAAGGCG AAGA CGCCTGTCGC           TTATTACTTACACCC  62 150
   Rpal_4785 5150733 .. 5150774 +  -9.3  -3.59979   GTTACTTCAACATCT CCAGATTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAATGACG TTTGCGATGGGAGGC  68 128
   Rpal_4800 5168489 .. 5168531 +  -9.3  -2.54896   CGATGACAGGCTCAG CGAAGCCATCCAGAG--ATGC AGT GCATGGCGCTGGATTGCTTCG TCGCTTCGCTCCGCG  56 99
   Rpal_4801 5169493 .. 5169537 +   -23  -3.60296   GGCGACACTGTGGGG CGACGCGCAGGCCGACTGCAGC CCT GCTGCAGACGG-CTGCGCG-CG TTTGCCATCGCAGTC 100 97
   Rpal_4802 NONE
   Rpal_4810 5179186 .. 5179204 + -10.2  -3.90856   ACGACAATCCACAAA             TGCCGGTG ATT CGCCGGCG             TTTGGTTCGAGGATT  76 121
   Rpal_4811 5179421 .. 5179436 +  -4.6  -3.59979   TTTCGCGCTCTGATC              GGCTCG GCAA CGATCC               TTTCCCATCACGGCG  55 28
   Rpal_4812 5180817 .. 5180859 +  -9.6  -4.56597   CGCCGATCAACGTCC CCAGCGGTCCCCGTCAGTCG CCG CGTCTGACCGGGGCCGCACC TTTTTGAGCGGCGCA  91 170
   Rpal_4813 5181741 .. 5181772 +    -5  -2.78384   GCGGCATAGCGCGCT      TCAAGCGGCCG-CGG GCA CCGGCGACCACCTGA      TCTCGTCGGCCCCCA  44 32
   Rpal_4815 5183703 .. 5183754 + -15.8  -3.35197   GGCGGCGCCTCCTCA CCCCGTCATTCCGGG-GCGCGCAGT GAA GCTGCGCGAACCCGGAATCTCGAGG TTAGTATGTATGGAG  84 46
   Rpal_4816 NONE
   Rpal_4817 5185359 .. 5185383 +  -9.1  -2.56095   CCCGCCTTCTCCGCC          ACCGCGTCGAC GCC GACGGCGCGGA          TCCCTTCGCTGTAGA  56 508
   Rpal_4819 5186593 .. 5186605 +  -9.1  -3.03441   GACCGCGCGATCGCG                GGTCG CGG CGACC                TCTTCCAGCGTGGTC  57 262
   Rpal_4823 5190618 .. 5190630 +  -4.7  -4.15044   CTAGACAACACGGCC                GGGCG GCG CACCC                TTTATTCGCCCCCCG  65 37
   Rpal_4824 5193704 .. 5193721 +    -4  -3.54489   GAAGAAGAGGTAGGA             TCGCGG ACTATC CCGCGC              TTGGTTTGAACTTCG  53 28
   Rpal_4825 NONE
   Rpal_4826 5194600 .. 5194622 + -16.4  -3.66018   CGGCATTCCGCTTGC           GCTATTCCCC AAT GGGGAATAGC           TTGTTCCGATGATCC  91 405
   Rpal_4827 NONE
   Rpal_4828 5195216 .. 5195235 +  -3.4  -5.03314   GCGTCCGCGTGCTCG            CCGCAGAG TAGA CGCTACGG             TTTTTTGGCCATGCG  78 15
   Rpal_4831 5198003 .. 5198022 +  -8.5  -2.91264   GTTCGGCTGTCCAGA            TGGGCGG CTCGGT CCGCCCG             TCTCTCCCTAACCCC  55 45
   Rpal_4832 5198917 .. 5198953 +  -6.5  -2.78018   AATCGTCTGAGTTGT   AGC-GCTGCCGGCTTC TCCCCC GAGGCTGGCGGCCGCG    TCGTTAATGAGACGT  49 44
   Rpal_4833 5199605 .. 5199626 + -12.3  -5.11613   CTTGAAACGACAAAA           GCAGCCATC GCGA GGTGGCTGC            TTTTTTGCGTGCTAT 100 84
   Rpal_4837 5201355 .. 5201405 + -14.2  -3.28712   GTGACGACAGCCACC TCATCGTCATTCCGGGG-CGCGAA CATAA TTCGCGACCCCGGAATCCCGA-GA TTGTAGCGCACAGAG  82 37
   Rpal_4842 NONE
   Rpal_4843 NONE
   Rpal_4844 5207845 .. 5207867 +    -4  -3.53091   GATATCGCTTCCGTC           GTTCGGCG GCCACCG CGCCGCGC           TTTCGACGGGACCCT  51 218
   Rpal_4845 5208559 .. 5208571 + -10.5  -2.63715   CAACGGGTTGCCATC                GCCGG CGA CCGGC                TGATATCACCTCGCT  59 91
   Rpal_4846 5210086 .. 5210102 +  -5.7  -3.02263   GCCGGCCGCGACGAT              CGCGGTG TAG CGCCGGG              TCTTCGCCAGCATCT  47 496
   Rpal_4848 5211196 .. 5211223 +  -5.5  -2.70932   GTTCGACACTCAGGG        CGAGGCGTGAGC CAAGC GC-CGCGCATCG        TCGTTCGCGACGGCG  46 16
   Rpal_4849 5211638 .. 5211653 + -11.8  -3.30124   CCTTCTGATCGCTGC              GCGCGG GGCA CCGCGC               TTGTGACCCCTGCGA  72 33
   Rpal_4850 5212815 .. 5212852 + -11.1  -2.71364   AGCGGGCGATGTCGC   GGGCGATGGCGAGGCCG AGTC CGGTGCCGCCTTCGTCC    TGGTTGCGGGCGTCG  60 280
   Rpal_4854 5217286 .. 5217299 +  -9.5  -3.56704   GCGTCGCTTCCATCT               CGCGC AGCA GCGCG                TTCATTTCCTCGGGC  64 253
   Rpal_4866 NONE
   Rpal_4867 5231418 .. 5231440 +  -4.8  -3.61244   CGGCAGCTCCGTTGA           CAGTGCGG CGTCTTC CCGCAATG           TTACTTTATAACATC  55 106
   Rpal_4868 NONE
   Rpal_4869 5234493 .. 5234523 + -10.3  -3.78597   CGAACGAGACGCTGA       GTGGCGTCGCCGG ATTTG TCGGCGGCGCCGG       TTTCGATTACTGACT  74 185
   Rpal_4870 5235073 .. 5235085 +  -3.3  -2.88044   CGCACGCATGGCTTC                GAGGA GCC TCCCC                ATGTTTTGTCACATC  42 160
   Rpal_4871 5237376 .. 5237391 + -11.8  -3.16564   GTCGCCACACAGCAA              GGCGCG TCAG CGCGCC               TTGCTCCAATCCGGG  70 42
   Rpal_4875 5241684 .. 5241696 +  -6.2  -3.28924   TGTGTCCTGGACGAA                GCGG TACAT CCGC                TTGTCGCGCCCCATC  53 332
   Rpal_4879 5245903 .. 5245913 +    -4  -2.71144   AAGCACCGCCAGCTT                 GTTT GTC AAAC                 TGCTTGGGCCGCCTC  42 159
   Rpal_4880 NONE
   Rpal_4881 5248341 .. 5248351 +  -4.6  -3.11222   CAATAGCGGAAAAAT                 CCGT CCC GCGG                 CTTTTCAAATTCCGC  48 35
   Rpal_4882 5249785 .. 5249813 +  -8.2  -2.71011   ACACTGCCGCTCGAT       GTCGTGTAAGCGG CCGC CCGCTT-CACAAC        TGCTTCGAGGACGCT  54 213
   Rpal_4883 5250653 .. 5250667 +  -7.8  -3.37028   GTCGAATGCTTCGAT               GCTGGT GAC GCCAGC               TTCTGCGATGTTGGT  58 57
   Rpal_4884 NONE
   Rpal_4885 NONE
   Rpal_4886 5253874 .. 5253909 +  -3.2  -3.74747   AGGAGCCACGCAGCA    GCGCCGGATCGTTTGAA CGA TTCCAG-GCTCCGGCTC    TTTAATGCCGCTTCC  54 56
   Rpal_4887 5254583 .. 5254614 +  -7.2  -3.94188   CTCCCGCCGCCGAAC      TGCGGA-CCGGCAGG AAT CATCCCGGCTCCGCG      TTATTTCCGGTAAAT  68 85
   Rpal_4888 5256182 .. 5256201 +   -15  -3.72453   GGACGCAATGAAAAA            GGCCGGGA TCGC TCCCGGCC             TTTCGCGTTCTTGGT  88 340
   Rpal_4897 5265545 .. 5265563 + -13.1  -4.08767   TCCTTGAATGAAAAA             GCCCGGC ACAAG GCCGGGC             TTTTGGGAAACTAGC  86 292
   Rpal_4905 5276180 .. 5276210 + -16.3  -2.87132   GCGGTCGTCAGTAGG      TGC-AAGACCGGCC CTCG GGCCGGTCTTCGCA       TGTCTGGAAGAGCCC  83 65
   Rpal_4907 5278390 .. 5278434 + -14.4  -3.11687   TCGTGAAAACAATCT CGG-GATTCCGGGTTCGCTCAC TGC GTGAGCGC-CCCGGAATGACCG TTAGGTCGTAGTTAC  80 121
   Rpal_4911 5282562 .. 5282618 +  -7.2   -3.1352   CGACGCTTTCCGGCT TGT-GGCGCAGCCATGACAAGT-CACCG CGA CGGTGCGCATGGCGTGCCGGCGCCTGCA TGTATTGAATTCGAC  56 10
   Rpal_4912 5283549 .. 5283600 + -17.4  -2.52543   CTGATACACGCCTCT CCTTC-GTCATTCCGGGATGCGCAC TTC GTTCGCGCCCCGGAATGACAGAAGA TAGATTGACCAGGCT  83 45
   Rpal_4913 5284667 .. 5284681 +    -7  -3.05963   GCACGTCAGCCGTCG               GCGCCG CTT CGACGC               TGTTGGGATGACGCT  51 427
   Rpal_4919 5298367 .. 5298377 +  -8.2  -2.94218   CAACGCGCAGGCGCG                 GCGC TAA GCGC                 TCTCTCCTCCGAACT  55 19
   Rpal_4920 5300235 .. 5300266 + -11.5  -3.01924   CTCAAAGCTCTCTCC      CGTCATCGCCCGG CTCCGA CCGGGCGATCCCG       TATTCCAGACCGCTG  66 112
   Rpal_4922 5304128 .. 5304162 +  -5.8  -3.61398   GCATCGCCTCTCTCA    GATCGTCATCGCCGGG CTCGA CCCGGCGATC-C-ATC    TTCTTCGAAAGAGAC  57 73
   Rpal_4926 5308333 .. 5308347 +  -2.7  -2.72049   TATACGGTGCCCCCG               AGCGG CAAGT CCGCG               TAATTACCGGCTCTC  39 8
   Rpal_4927 NONE
   Rpal_4928 5310580 .. 5310625 +  -9.1  -3.09452   CGCCCGGACAAGCCG GGCGATGACGGTGGAGAGTG GAGCGCG CGCTCTGCGCCGT-ATCGTC TCTCTGTTCAAACAT  60 177
   Rpal_4929 NONE
   Rpal_4930 5311668 .. 5311692 +    -5  -3.84406   CATCAGCACGACGGC          CATCACCGAG AACAG CTTGATGATG          TTGTTCTGCTCGAGA  58 269
   Rpal_4932 5313549 .. 5313566 + -14.1   -5.7946   CCAGAGTTTCGAAAA             GCGCCGG TTCG CCGGCGC              TTTTTTTATTGGGCG 100 61
   Rpal_4934 5316894 .. 5316946 + -19.7  -3.06796   AAGTGACTACTCGAC CGCAGCGTCCCAACCTCTCCCCGCT CTT GGCGGGGAGAGGTCGGATCGCATCG TTAGATGCGATCCGG  93 246
   Rpal_4935 5317378 .. 5317427 + -16.4   -3.1505   GGCTGTGCCCAGCCC CTCACCCCAC-CCCTCTCCCCGC CAAGA GCGGGGAGAGGGCGCGCGCTGGG TTCGTGACAACTACT  86 58
   Rpal_4936 5318541 .. 5318564 +  -2.2  -4.06419   CGCAATGAACTCAAT          TCGGTGGCCG AAGC TGGGCGCCGC           TTATTTGTCGGGGCC  57 82
   Rpal_4941 5323030 .. 5323056 + -22.3  -3.84451   CAGACCCCATTGTCG         CGGCCGGCGCC CCCCA GGCGCCGGCCG         TTTGCATTTCAGGGC 100 47
   Rpal_4942 NONE
   Rpal_4943 NONE
   Rpal_4944 5327707 .. 5327740 + -10.3  -2.52464   GAAAGGCAGTAGAGA     TTCCGGATTCGCTCAC TGC GTGAGCGCC-CCGGAA     TGACTTCGGAAAAGG  59 238
   Rpal_4947 NONE
   Rpal_4949 5330910 .. 5330957 + -14.2  -2.75992   TAGTTCGACGTCATT GCGAGCGAAGCAATCCAGCATCT CGC ACGCGCTGGATTGCTCCGC-CGC TGATATTACATGCCG  75 54
   Rpal_4961 NONE
   Rpal_4962 5342994 .. 5343015 +  -3.7  -3.23216   TCGAACATGGAGCAG           TCTGATGCT CAGT AGGATCGGA            TTAGTCGTGGTCGGC  47 193
   Rpal_4963 5343976 .. 5343999 +  -8.9  -3.74693   GCGGATGCCATAGGC          CTGGGCGAA CGCCTT TTCGCTCAG           TTTGCTGCCGTCGAA  65 506
   Rpal_4966 5345589 .. 5345607 +  -2.3  -3.09635   CACATCTGATCGTAT            CG-CACCG CCAA CGGAGACG             TTAGCTGATCGCCAT  41 32
   Rpal_4967 NONE
   Rpal_4968 5347767 .. 5347800 + -17.5  -3.17146   TGACTTGGGTCGTCA     TTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAA     TCTCTTGTCAAGCAA  89 518
   Rpal_4979 5359459 .. 5359491 +  -2.7  -4.08958   AAGTGACGCCGCCCG      TTTTGGCGGTGCT CAGGCCC GGCATTGCCACAA      TTGTTGTTTCAAGCT  57 35
   Rpal_4980 5360340 .. 5360368 +  -5.2  -2.79133   ACCGCACCCGATAAG       CGGTCATCCCCGC GAAA GCGGGGATC-CAG        TATCCTAGAGCGTTC  44 99
   Rpal_4981 NONE
   Rpal_4982 5361402 .. 5361422 +  -4.7   -3.9392   CGGCATAGCAGTTTG            CTTTGCGCA AAC TGCGTAAAC            TTGTTTGCGCTGACC  60 406
   Rpal_4983 5365646 .. 5365673 +  -6.3  -3.41325   GGATCAACGGATCCG        T-CATCGCCGGG CTTGA CCCGGCGATCCA        TCTTGTTCGCATATC  57 77
   Rpal_4984 5366887 .. 5366928 +  -3.6  -3.93288   GTGCCGGTGGCGCGG TCCCTGCCGCGC-GCGTGCC GTTC GG-ACGCTGAGGCGCAGGGG TTTGGTTGGATGGGA  56 75
   Rpal_4985 NONE
   Rpal_4986 NONE
   Rpal_4987 5369805 .. 5369840 + -17.7  -2.62396   ATTGCTGAGGAATCC    GGCTATATCGGACGG CCTCCC CCGACCGATATAGCC     TGATGTCGCGCACTC  86 46
   Rpal_4988 5370606 .. 5370630 +  -6.4  -3.02263   CCCCGACCTCGCCCC         GCAGGCGGCGGG CTC CTCGCC-CC-GC         TCTTGCGAGGCCTCT  51 123
   Rpal_4989 5372142 .. 5372176 +  -9.2  -3.02263   GCTCGCCGGGGGTGA     TGGCATCGACATGGAC CTC GATCTTGTCGGTGCCG     TATTCCAGCGCATAT  57 499
   Rpal_4992 5376396 .. 5376427 + -11.4  -3.06696   CCGCATCCAAATGAA      AAGCGCGAGGCGGA TCGC TCCGCCCCGCGCCG       TGTCTTGAAGCCAAA  66 363
   Rpal_5003 5388768 .. 5388778 +  -4.6  -3.62859   GCCGGCCAGCACGTC                 GCCG CCA TGGC                 TTTCCGGCTTGTCAT  55 130
   Rpal_5006 5391960 .. 5391980 +  -3.9  -2.87931   GGGACGATGCTCCAA            GGGATTAGA TGA TCGAACCCC            TCTATCCGCGATCGC  44 153
   Rpal_5007 NONE
   Rpal_5008 5394527 .. 5394580 +    -9  -3.36273   CAGCCGCGGACCCGG CGC-TGCTT-GGTGTCGGCGGC CCAAACCACATA GCCGCCGGCACCGAAGAACGCG TTGGTGTTGGCAGGC  63 121
   Rpal_5010 5395972 .. 5396029 + -12.7  -2.70143   ACCGCGATCTTGCGG TCGAG-CGCCTGACGCCGAGGTCCCGAC AGT GTCGCGGCCTTGTCGTTGAGCGACTTGA TGATCTGATTGCCCT  65 513
   Rpal_5013 5398176 .. 5398201 +  -6.7  -3.17212   CGATGGTCGGCAGCC         CGGCG-GCGCGC GCG GCGCGGACCCCG         TTGGTGGAATCCTCG  52 220
   Rpal_5026 5408872 .. 5408895 + -19.6  -5.27335   ATCGGACTTACTCGA          GAGCCCCGGC TTCA GCCGGGGCTC           TTTTTGTTTCGCGGA 100 53
   Rpal_5029 5411567 .. 5411603 +  -4.3  -3.11634   GCTGCCGTAGCTCAG    TGGTAGAGCACTCCCTT GGT AAGGGAGAGGTCGACAG    TTCAATCCTGTCCGG  47 225
   Rpal_5030 5412243 .. 5412254 +  -3.6  -2.53015   TCGCCATCGAGCCGG                CCGG CTCA TCGG                 TGAGTTCCGCGCTCT  39 49
   Rpal_5031 5414076 .. 5414096 +  -3.2  -3.56704   TCGTGGGTATAGGCG           GCCGGTTGC ATCA GCA-CCGAC            TTACTTTGATGAGCG  49 468
   Rpal_5037 NONE
   Rpal_5038 NONE
   Rpal_5039 NONE
   Rpal_5040 5422805 .. 5422828 + -10.3  -3.64716   CGCCGATATAGGTCA          TCGCCGAGCG CAGGC CGC-CGGCGA          TCTTTTCGACCGTGG  70 246
   Rpal_5042 5424943 .. 5424987 +  -6.4  -3.96148   GGTGCAGCCCGGCAG CATCGCCGGCTGATCGGG AAACATCGC CTCGATCAGCTCGCTGTG TTTGTCCTCGCGGCA  64 222
   Rpal_5044 5426605 .. 5426621 +  -6.5  -3.58269   GCGATTCACCACGCT              CCGGC AGACGAA GCCGG              TTTCACGCTGGATTC  59 91
   Rpal_5045 5427915 .. 5427968 +  -7.5   -3.1552   CTAACGCCGACGCCG GCTGATCAACGCCCGCC--GTC-GGC AAGCC GCCAGACATGGCGGGCGATCATCAGA TCTTCATCGGTCGGG  56 21
   Rpal_5050 5434060 .. 5434083 + -19.6  -4.14056   TCGCTACGAACAAAA          GCCGCGCGGA GCGA TCCGCGCGGC           TTTGTCGTTTCAGAT 100 56
   Rpal_5055 NONE
   Rpal_5056 NONE
   Rpal_5057 NONE
   Rpal_5058 5442809 .. 5442819 +  -8.2  -3.61398   ACAGCCCCAGCCACG                 GCCG CGG CGGC                 TTGTTCGGCCGGCCG  62 505
   Rpal_5061 NONE
   Rpal_5062 5447301 .. 5447312 +  -4.4  -3.78934   GGTTGCTTCCATTAG                TCGA ATGA TCGA                 TTGTTCTGCCGCAAA  56 193
   Rpal_5063 5448268 .. 5448280 +  -5.5  -4.00124   ATCTGCTGCTGACGC                GGTCG CGC TGACC                TTTCCTTCTCCGCTC  65 15
   Rpal_5066 NONE
   Rpal_5067 5454636 .. 5454657 +  -2.2    -3.551   CGCGCCAACGACCCG           GTCGCCGT CCCGGC ACGCTGAC            TTCTCTGCGTTGCCC  49 5
   Rpal_5069 5456644 .. 5456655 +  -5.8  -3.01712   GACTCACCCAGCCGG                CGGA ATGA TCCG                 TGTTCCGGCGCCCGC  49 18
   Rpal_5072 5461097 .. 5461109 +  -4.7  -3.64599   CCTCTTCAGCCGCAT                CGCGC GCG GCGCA                TTTAGACTGTGATGG  55 1
   Rpal_5073 5462404 .. 5462420 +  -9.4  -3.05596   GCTTCGCTCAATCCC              GCCACC GCTCG GGTGGC              TTCGGTCACCACCTC  57 370
   Rpal_5075 NONE
   Rpal_5076 NONE
   Rpal_5077 5465324 .. 5465345 +  -7.2  -2.82834   CACAGTGCAGACGAT           CGACGCCG GGAACA CGGCGTAG            TGTGCTGATGCGCTG  53 4
   Rpal_5080 NONE
   Rpal_5081 5468995 .. 5469019 + -19.3   -4.4078   GCCGCACAAATCAGA          CGGCGGATCGC GCG GCGGTCCGCCG          TTTTCGTTCGCCAGC 100 68
   Rpal_5082 5469946 .. 5469972 + -18.1  -3.24076   TCGTCTTAGAAACGC         CAATGCCCGGG ACAAG CCCGGGCATTG         TGTGTTGTGTCATGA  91 255
   Rpal_5115 5498394 .. 5498423 + -15.8  -2.60615   GAACTCATCACGTTG       GTCG-TGGCCGGG CTTGT CCCGGCCATCGAC       GTCTTTGCCGCAACT  77 41
   Rpal_5118 5501250 .. 5501263 +  -3.8  -3.25072   TGATCGCCAAGCGTT               TCGC CTGAGA GCGA                TTCCGTTCTGATGGA  47 18
   Rpal_5127 5514383 .. 5514416 +  -5.1  -2.79312   GCGACCGTGAAGGCG     GGCGCGCGCATACCG ACGC TGGTGTGGGCGCGGA      TGTGATGGGCGCTTT  45 518
   Rpal_5132 5519959 .. 5519998 +  -2.8  -2.62616   GGCGACGACGCAGAT  GGAGCCCGC-CTGATGA CCGATAT TCATCCGCGCGAGATCC  TGATCTGCACCATCG  39 13
   Rpal_5133 NONE
   Rpal_5135 5523657 .. 5523670 +  -9.5  -3.14564   AGTTCTATGCGATGG               GGCGC TGAG GCGCC                TTCATCGAAAGCTCA  61 18
   Rpal_5136 NONE
   Rpal_5137 NONE
   Rpal_5138 5526192 .. 5526203 +  -4.4   -3.3197   CAGGCGCTCAATGTC                GATG GCGG CATC                 TTCTACAGCTAATCT  48 2
   Rpal_5139 5527263 .. 5527284 + -17.3  -4.54727   GGATGGACGACATTG           TGCCCGCGC TTCG GCGCGGGCA            TTTTCGTTTGGGAGG 100 54
   Rpal_5140 5527975 .. 5528000 + -14.7  -4.86731   CGCCTCAAACGCGAA         AACGCCGCCTC TTGT GAGGCGGCGTG          TTTTGTTTGAGCGGA 100 186
   Rpal_5146 5543546 .. 5543587 + -11.7  -3.69605   TTGCTACCCAAAAAG CAG-G-GATGCACCGGCTG ACGTCG CAGCCGGTGCATCGCACAG TTCCTTTTCGCTGCA  78 45
   Rpal_5147 5544322 .. 5544335 +  -2.3  -3.72576   CGCCGAATAGGCTGC               CTGCA CGCC TGCCG                TTTCGTCGCCGACCA  52 31
   Rpal_5148 5546786 .. 5546844 +  -3.4  -3.01712   CGGCGGAGTAACACG GAT-CGTCATTGCGAGCGCAGCGAAGC CATCCAGA GTTTCGCT-C-CTCGCAATGACGGAGA TCTTCCCGAACAAAC  43 30
   Rpal_5149 5547711 .. 5547733 +   -22  -4.39329   TCCACTTCACGGCAA           GCGGCGCGCG GTT CGCGCGCCGC           TTTGTTGTGTGCGGT 100 46
   Rpal_5150 5549000 .. 5549049 +  -3.7  -3.41602   AAGTAACCGCGCCCA C-TC-GTCATTCCGGG-GCGCTCAC GAAA GTGAGCGAACCCGGAA-GCCAGACG TTATGATCACCTCGA  51 35
   Rpal_5157 NONE
   Rpal_5158 NONE
   Rpal_5159 5559029 .. 5559064 +  -3.9   -4.4727   CCGATCCCGACCTTG    CTTC-AAGGCGTTCCG TTCCC CGGGGCGCCTTCGCTG    TTTTGTCACTATTGG  69 53
   Rpal_5160 NONE
   Rpal_5161 NONE
   Rpal_5162 NONE
   Rpal_5163 5566004 .. 5566046 + -12.6  -3.57144   GTGCGCCCGGTGCTG GCCGCC-GGCGCCTCGGCG AAATAA CACCGAGACGCCTGGCTGC TTTAGCCGTAACCGA  77 2
   Rpal_5165 5568773 .. 5568785 +  -6.9  -3.50808   GACACGCCCGGCTTG                CCGTC CTT GGCGG                TCTTCTTGTGGTCGA  58 218
   Rpal_5168 5573738 .. 5573751 +  -3.8  -3.28003   AGCCGAAGAAGATCA               GGGT CGGCTT ACCC                TTCATGCTCTGTTCG  47 422
   Rpal_5171 5575200 .. 5575220 +  -6.7  -3.89614   ACGAGCGGTCGAGTG            CGCCGCGCA GAT TGCTCAGCG            TTTGTGCAGATTGCC  65 98
   Rpal_5172 5577271 .. 5577285 +    -7  -3.71848   GTGCGGGCAGCGTAG               TCCGCG GCG CGCGGC               TTATTGATGACCAAG  62 26
   Rpal_5173 5577929 .. 5577961 +  -7.7  -4.56597   CGCTTCGAACGGATT     CGT-CATGGCCGGG CTTCGT CCCGGCCATCCGCG      TTTTTCGGACGGCGC  83 158
   Rpal_5175 NONE
   Rpal_5176 5581243 .. 5581293 +   -14  -3.28712   CTGCCGACCTGATTC CAGCTCACGGTTTTCGGCACGG GCGCTTG CCATGCCGGAAGCCGATAGCTG TTATAGACCACCCGC  77 29
   Rpal_5177 NONE
   Rpal_5178 NONE
   Rpal_5179 NONE
   Rpal_5180 5585559 .. 5585575 +  -2.1  -2.52676   ATGACTTCAACGAGC              GCACAGT TGA ACCGCGC              TGACTTGGACGAGTA  37 237
   Rpal_5181 5586528 .. 5586580 + -20.6  -3.76224   CGATCGCCCGCGCGG CATGC-GCGGAC-CTCCCTCTCCCCG CCG CGGGGAGAGGGAGCGGCCGCCGCCCG TTTCGTAACTAACAA 100 43
   Rpal_5182 NONE
   Rpal_5183 NONE
   Rpal_5184 5588856 .. 5588877 +   -13  -4.71426   TCGCATTGGTTCAAA           TGGCCGGG CACCGT CCCGGCCA            TTTTCTTGATCGCGC 100 61
   Rpal_5185 5589428 .. 5589473 + -19.9  -3.27525   CGCTGGAATTCAGCC CTCAGGCGCGATTGTCCTGCCT CTA AGGTCGGA-GATCGCGCCTGAG TTGCGTTTACACGAC  95 42
   Rpal_5186 5589925 .. 5589935 +  -4.6  -3.55563   TGAACTCACTTCCTC                 TCGC CCC GCGG                 TTTCCGGCATCCCGT  55 38
   Rpal_5187 5590633 .. 5590652 +  -6.4  -2.87132   CTCCGCCGGCGCATC            GGCGTAGGC TGG GCC-ATGCC            TATCTCGAACCGCAG  50 63
   Rpal_5188 5591382 .. 5591398 +  -6.5     -3.24   ACGAATTCGCCAAAT              CCCACCT TGC AGGTCGG              TTCCTCGCTTGCTTT  53 88
   Rpal_5189 5592487 .. 5592530 +  -9.6  -3.06183   GCGAGGCGTGAAACG ACGAAGCAATCCAGCTCCGTG TAC CGCGCT-CTGGATTGCTTCGC TTCGCTCGCAATGAC  60 79
   Rpal_5190 5593487 .. 5593516 +  -2.7  -2.73364   ATAGGGCCGCCGCGA       TGCGGGGCCCGTT CGAC GACCGATCCTGCA        TCGTTGGCGTACACC  39 149
   Rpal_5191 NONE
   Rpal_5192 5594709 .. 5594725 +  -4.3  -3.82097   ATCCTGTTAGCCGGA              TCGATGC TAC GCAGCGG              TTTCGTGGGTTTCCC  56 73
   Rpal_5194 5598020 .. 5598038 +  -6.6  -3.14132   CGATATCGATCAGCT             CGCTGCGG CAC TCGCAGCC             TTCGTGACCGCCGCC  51 366
   Rpal_5200 5602902 .. 5602920 +  -7.3  -2.78384   CCGGAATGCACCAGC             CGCGCGG ACAGC CCGCGGG             TCTCGTCGCCGCGCG  48 470
   Rpal_5202 NONE
   Rpal_5203 5611517 .. 5611534 + -14.1  -4.87291   ATGGTGTCTTCGAGT             GGCCGGG TTCG CCCGGCC              TTTTTCGTTGGCGTC 100 169
   Rpal_5204 5614957 .. 5614967 +  -8.2  -2.53015   CGCTGGCATCGGCGC                 GCCC TCG GGGC                 TAGATTGCGGCGTCT  53 293
        pyrE 5615585 .. 5615600 +    -6  -3.60627   GAGTGCAGGCGCGGC              CGGCGG AAAC CCGGCG               TTTACCATCCCATCC  57 39
   Rpal_5206 5616819 .. 5616829 +  -2.4  -4.09685   CGAGGTGGGCGCGGG                 CGGC GGC GCGG                 TTTTCGGCGGTGAGC  58 367
   Rpal_5208 5620128 .. 5620169 + -15.9  -3.12351   TTTTCCGACACCTGC GATATTCCGGGTTCGCGCGT TTC ACGCGCGC-CCCGGAATGAC TTGCGTGTGGGCGCG  83 141
   Rpal_5209 5621144 .. 5621160 + -15.1  -2.71924   TGGCGCAGCGCTCCG              GCGCGCG TCG CGCGCGC              ATTTGAAGGGGCGTC  78 43
   Rpal_5210 5622181 .. 5622227 +  -9.5  -2.57564   GGGCCCTCCCCGCGA TG-GTCATTCCGGG-GCGCTTGC GTA GCAAGCGAACCCGGAATCTCGCA GTTGTGGAACGATAG  56 41
   Rpal_5211 NONE
   Rpal_5212 5625414 .. 5625439 +  -6.7  -3.61398   GGCCGAGCGCGTCGA         TGCCGGCGACG GCCG CGACGTTGGCG          TTCTTGCGCACCACC  58 298
   Rpal_5214 5627339 .. 5627362 +    -3  -3.53811   GCTCTTTGCGCGCTT          CGGCGACCAG GCGG TTGGTGGCGG           TTTCGACCACGTCGC  49 143
   Rpal_5219 NONE
   Rpal_5220 5632341 .. 5632371 +  -8.3  -3.53563   CGGCGGCGGAGTTCT      TCGAGGATGCGGCG GACG CGCTGCA-CGTCGA       TTTCGCCGGGGATCT  62 306
   Rpal_5222 5635686 .. 5635701 +  -4.6  -3.35679   CACCAGCACTTCCGG              CACCAG CGCG CGGGTG               TTGTAAGTACACGCC  51 360
   Rpal_5226 5639380 .. 5639433 +  -2.5  -3.62597   AGGAAGCCATAGCCA CCTCGGCGTCATTCCGGG-GCGCGCGC GCCA GCGCGTGAACCTGGAAT--C-CAGAGG TTGTTGAGCACTCGG  49 29
   Rpal_5229 5641879 .. 5641899 +  -6.7  -3.15249   CATCGCCATGTCGAT            GGCTTCGAC GTT GCCGACGCC            TTCGTACAGCGTGTA  52 277
   Rpal_5235 5646320 .. 5646334 +  -4.2  -3.53012   CGCAGTTGCGAGCGC               CCGG GGCGAAA CCGG               TTTGAGCAGGAAGGC  51 6
   Rpal_5238 5649396 .. 5649406 +  -3.2  -4.18018   CCTTCGGCTCGCAAT                 GACT GAA GGTC                 TTTTCCGTCAGCGGC  61 117
   Rpal_5240 5652264 .. 5652274 +  -8.2  -3.75517   TTGTGATCGCAACCG                 CGCG GGA CGCG                 TTCGTTTTGTGAACT  69 48
   Rpal_5241 5653470 .. 5653525 + -14.7  -3.78934   CGGCGTTGTCCGACG CGTCCCACTGCATCGGCGTGCGGCAGC CATC GCGGCCG-ACACCGATGCCG-GGCACG TTCTTCTCGAACGGA  87 485
   Rpal_5244 5655753 .. 5655777 + -17.2  -5.00884   CTTATTGAGTTGTTA          GAAGCGCCGG CTTGT CCGGCGCTTC          TTTTTTGCGCCGCAT 100 58
   Rpal_5245 5656584 .. 5656601 +  -8.3  -3.14931   CATCACGCGGGCGTT             GGCGTGC TGAT GCTCGCC              TTCATGCCCACTCGC  56 85
   Rpal_5247 5658079 .. 5658095 +  -3.5  -3.13403   TGAAGGCGTACATCG              GCGCCGC GGC GCGGAGA              TATTGCTCACCGGCG  45 288
   Rpal_5249 5661975 .. 5661995 +  -9.6  -3.14132   TTCCAGCACCGCGCG            GGCGCCCG AGCCG CCGGCGCC            TTCGTAGCCGAAGCC  59 262
   Rpal_5251 5664494 .. 5664522 + -11.1  -3.37344   TCGACGAAGTCACTT       CGCGGGCGATGA CCGTAA TCATCGCC-GCG        TTCGTTACATCGGCC  69 140
        apaG 5668603 .. 5668629 +  -8.7  -4.30576   GCGACGCCTTCGAAC        GG-CGCGGTGAA ATCC TTCCCCGCGGCC         TTTTCCTCATCGACA  79 449
   Rpal_5260 5674954 .. 5674973 +  -7.1  -2.53911   TAGCAGACGAGCGCG            GCCCG-CG GACTA CGACGGGC            TGCCTTCAACCTTGG  48 257
   Rpal_5271 5686069 .. 5686091 +  -4.1  -4.20783   CGATGTGGAACGGCT          TC-CGCCGTG TCGC TGCGGCGTGA           TTTCTTGACTCACCT  63 3
   Rpal_5272 5687028 .. 5687062 + -18.5  -4.18197   CATGAATTGCCCACC     GCGCAGCCCGCGCCC CCAAA GCGCGCGGGCTGCGG     TTTTGCGTCCCACCT 100 95
   Rpal_5273 5688088 .. 5688115 +  -9.9  -2.53263   TCGGCCTGCGCGAGG        CCACGCCGTAA AAGCCG TTACGGCTTGG         TGCGTTCGAACTGCC  59 15
   Rpal_5275 NONE
   Rpal_5276 5693410 .. 5693422 +  -4.7  -2.78384   TTCACCATCATTCTG                CCCGC AGC GCCGG                TGTCATGAGCCAGAA  44 5
   Rpal_5277 5694228 .. 5694258 + -15.6  -3.27525   CGCTTTTTCGTCCGA       GTGTTTCGTCGC GGCTCTG GCGACGAAACAC       TTCCATTTCGCCACG  84 86
   Rpal_5278 5695253 .. 5695279 + -15.2  -4.36127   TAGGCCTCCAAGGGA         CCCGGACGAG ATGCCCC CTCGTCCGGG         TTTTCGCTTGTTCGA 100 295
   Rpal_5279 NONE
   Rpal_5280 NONE
   Rpal_5281 NONE
   Rpal_5282 5698670 .. 5698695 +  -3.2  -2.58253   TGGTGGTCCGGCAAA         GGCCCGAG CTGTAACGCC CTCGCGCC          TGCCTTCCCTTCTCT  39 12
   Rpal_5283 5700209 .. 5700239 +    -4  -3.72576   CGTGGTAGGCGCTGT      CGC-CGAGCAGTTC CTGCA GAAC-GCGCGCGCG      TTTCATGAACAGGCC  54 471
   Rpal_5286 NONE
   Rpal_5290 5709324 .. 5709354 + -15.5  -5.20216   AACCAACGTCGAACA      GCCTCCGAGC-GCC GAAA GGCTGTTCGGAGGC       TTTTTTCGTGCTATC 100 124
   Rpal_5291 5709865 .. 5709877 +  -3.3  -3.14132   ATCACGGAACCGAGA                GCCCA TGA TCGGC                TTCCTGCGCAAGCGC  44 195
   Rpal_5292 5710279 .. 5710326 +  -3.2  -3.17392   TCAATTCCTCGGCAC TGCCGGCAT-AGGGCGGCTGCCG CAG CATCAGCCGCACGCATTCCCGCA TTACGTTGCGACGTG  44 241
   Rpal_5294 5712829 .. 5712861 +   -17  -3.76492   CACCACGACCTCAAA      CGCGCATGGCCGGG CTCGT CCCGGCCATTTGCG      TTTGGTGGAGTTGAA 100 52
   Rpal_5296 NONE
   Rpal_5297 NONE
   Rpal_5298 NONE
   Rpal_5299 5719601 .. 5719619 + -10.2  -3.33696   CTCCTTCAGCTTCTT             GGCCACCG CAT CGGTGTCC             TTGGTTCCGGCGGCC  63 499
   Rpal_5309 5730973 .. 5730988 +  -8.2  -2.90496   GATCCTGGAGCTCGC              GGCGTG AGGA CGCGCC               TACTTTCGCGGGACG  55 19
   Rpal_5310 5733151 .. 5733163 +  -4.8  -3.31144   GCGGCTCCGAGGCTA                CGCT TTGAC AGCG                TTGTCAGGGTCAAGA  50 481
   Rpal_5312 NONE
   Rpal_5313 NONE
   Rpal_5314 5736114 .. 5736129 +  -6.8  -3.53224   CCGCAGCGTCCGACC              GCCGTT CCGG AGCGGC               TTTCACAAAAGCATC  57 380
   Rpal_5316 5738291 .. 5738346 +  -7.4  -2.60496   ACGTCGAGCGTCTCG CGCGGGAAGCTGC-CTTCGGCGACAAG CGC CTCGTAGCCGAGCCGCGGATGCTCGCG ATATTTGCGCAGCGC  50 389
   Rpal_5318 NONE
   Rpal_5319 5740914 .. 5740928 +  -8.5  -2.80816   ACGCGCAGCCGGTCG               CCGGC GTCGA GCCGG               TATGCTGGCTCCCCA  54 488
        rpsT 5743006 .. 5743024 +  -8.8  -2.83271   GCGTCTGACGCACAG             CATCGCCA AGC TGGCGAAG             TAATTCTCACCATCA   0 4
   Rpal_5322 5741917 .. 5741971 -    -2  -3.18032   GAAGAACATCGAAGA CCCTCCCGGCGCG-GCCGATG-GCGGC GGAT GCCGCGCGTCCGCGCACGC-ATGATGG CGACAGCCGAGCCTC  43 132
   Rpal_5321 NONE
   Rpal_5320 5740466 .. 5740495 -  -7.1  -3.01791   AGGCTGGGCTGAACA       GGC-CGCGCTGGTT CAG AACCAGCGTTCGCC       GACATAGACGGTGTC  51 8
   Rpal_5317 5737991 .. 5738022 - -10.8   -3.0094   GTTGATGCAGACAGA      TTTCCGGGTTCGCGC TTC GCGCGT-CCCGGAAT      CACCAGTTGGTATCA  66 38
   Rpal_5315 5735691 .. 5735719 -  -9.4  -3.77607   AAGAACGTGATGAAA        GCCGCGCGCGCC CAGGC GGCGCGCGAAGG        ACATTTGTCGAATTT  71 89
   Rpal_5311 5732680 .. 5732703 -    -3   -3.9461   TTGGGGGAACAAGAA          CAGCCGAATC GTGT GACGCAGCCG           GTTGCGGCCGGCGGC  56 62
   Rpal_5308 5728646 .. 5728656 -  -8.2  -3.28791   ACGCCGTTCTTATAA                 CGGC TAT GCCG                 GGCAATGACGGCGGT  60 51
        mtnA 5727337 .. 5727358 -  -8.7  -3.17319   TTGAACTCAGCAATA           CCGCCGATGC CGT GC-TCAGCGG           CCGAACAGCCGCTGC  58 50
   Rpal_5306 5726869 .. 5726887 -  -6.6  -3.86944   CTGACAATGATCAAA             CCGGCACG GAT CGTAGCGG             CCGTCAGCCGCCGTT  65 29
   Rpal_5305 NONE
   Rpal_5304 NONE
   Rpal_5303 5724380 .. 5724393 -  -9.5  -2.91429   GAAAACCGGGATATA               GCGCG GGAG CGCGC                GATGGCAAGGTGGCG  58 49
   Rpal_5302 5722380 .. 5722406 -    -5  -3.28712   CTCTGCTCGGCACAA         CGATGCCGAGCA GAG TGCGCGCCATGG         ATTAAAAAAGCGGTA  50 62
   Rpal_5301 5720633 .. 5720649 -    -3  -3.16647   CTTAGTTAGGAAAAT             TGCCGCT GCCC AGCGG-A              TTGTTCAGCAATGGC  44 46
   Rpal_5300 5719339 .. 5719363 - -10.6  -3.76952   CCTACTCAAGGCAAA          GCCGGTGCCC TTGCG GAGCGCCGGC          CTTCACTTCAGATGC  74 53
   Rpal_5295 5712829 .. 5712861 - -14.8  -3.62572   CACCACGACCTCAAA      CGCGCATGGCCGGG CTCGT CCCGGCCATTTGCG      TTTGGTGGAGTTGAA  85 83
   Rpal_5289 5706026 .. 5706036 -  -2.4  -2.78384   TGCGCGCGCATCATA                 GGGC CGG GCCG                 GGCGTGATCAACCCG  39 33
   Rpal_5288 NONE
   Rpal_5287 5703368 .. 5703406 - -10.2  -2.90615   AGCTGTCGTAAACCA   GTCCTCTGGGACACGC CGAAGAC GCGCGCCCCGGATGAC   CATAGAAACGGTTAT  61 37
   Rpal_5285 NONE
   Rpal_5284 5700144 .. 5700157 -  -3.8  -3.44844   ACGACAGAAGACGAA               CGAC GTTCTG GTCG                GACCTCAGTACTTCT  51 30
   Rpal_5274 5688101 .. 5688111 -  -8.2  -4.09685   GGCCACGCCGTAAAA                 GCCG TTA CGGC                 TTGGTGCGTTCGAAC  73 19
   Rpal_5270 NONE
   Rpal_5269 5683176 .. 5683192 -    -5  -3.53444   CGATGCCGGCCGAAA              GCTGCC GTCAG GGCCGC              TGCGATTGCCGCGCG  53 16
   Rpal_5268 NONE
   Rpal_5267 5680429 .. 5680439 -  -8.2  -3.17723   CCATCTGTAAGCGAA                 GCGC TCA GCGC                 GCCCGACTGCGCTTA  58 137
   Rpal_5266 5679214 .. 5679226 - -10.5  -3.54424   CTGCAGGGCCCGAAA                CCGCG CCT CGCGG                CTGGAGATCTGAATT  70 191
   Rpal_5265 NONE
   Rpal_5264 NONE
        pstB NONE
   Rpal_5262 5675748 .. 5675771 -  -2.2   -2.9155   CCGGCGAAGACCAGA          TCGACGTCAG TTGC CGGGCGTCGC           GTTGGCGAAGGTCGT  40 8
   Rpal_5261 5674887 .. 5674924 - -22.9  -4.07568   GTGGTCGCCCGAAAA   TTCAGGAGCCCGCACAGC AAG GCTGCGCGGGCTCC-GAA   CTAATCACAGTCGTT 100 64
        argD NONE
   Rpal_5258 5671534 .. 5671554 -    -9  -2.53876   CGCTACGCGAAGCCA           CCCTCTCCC ACGA GGG-GAGGG            TAAAATTGGGCGCCT  56 68
        hslO 5669785 .. 5669796 -  -7.2  -4.87803   TACTTCGAAACAAAA                CGCG CAAT CGCG                 TTTGCACGAAATACC  88 499
   Rpal_5256 5668117 .. 5668145 -  -5.1  -4.58283   GAAGCGGGCGAAAAA        TTCGAGATCGACG TCC CGCCGTTCTCGCT        CGACAGCCCAGAAGG  77 119
   Rpal_5254 NONE
   Rpal_5253 NONE
   Rpal_5252 5664414 .. 5664438 - -15.7  -3.45945   GTGAGCGAGAAGTAA          CGGGACGACGC ATC GCGTCGTCCGG          GGACTGCTTCAGAGA  85 114
   Rpal_5250 5661751 .. 5661773 -  -7.6   -3.7791   TAACGATCCACTAAA           GGCGCCGC CTCGCTT GCGGCGCG           TGGTGCCACGCGTCC  65 50
   Rpal_5248 5657576 .. 5657598 -  -4.6  -2.72991   CGAGATCGCCAAGCA           GCTCCGCTCC TCG GGCGCCGTGC           ATGCAGTCGGTCAGG  43 240
   Rpal_5246 5656506 .. 5656535 - -13.6  -3.17212   GCACGACCTGAGCAA       CGCGGTCGGC AAGCCCTGAG GCCGACCGCG        AAACGCATCGTGCCG  76 44
   Rpal_5242 5652875 .. 5652888 -  -3.7  -3.81488   GGCGCTGAAATACAA               CGTCG AACT CGGCG                GCTATCAGGTGATGG  57 194
   Rpal_5239 5649339 .. 5649376 - -12.1  -3.18582   GAGCGGAGCGACGAA   GCAATCCAGGGGCTC GGTGCAGG AAGCCTCTGGATTGC    TTCGCCTTCGGCTCG  70 89
   Rpal_5237 5647511 .. 5647526 -  -2.4  -3.40403   CCGTCCCGACTACAA              TGCCAC GCTC GCGGCG               AAGAAGTCACGCCGG  47 82
   Rpal_5236 5646255 .. 5646278 -  -5.2  -3.17075   CGGCGGCGAACTCAA          CGCCGCGA TCATCAAG TCGCGGCT           GCCCGAGGGGACGAC  49 13
   Rpal_5234 NONE
   Rpal_5233 5644476 .. 5644494 -  -2.2  -4.81249   CGGCAAAGCCAAAAA             CCGCCTTG TTC CCTAGCGG             TTCTGGCCCGGCACC  72 19
   Rpal_5232 NONE
   Rpal_5231 5642649 .. 5642666 - -14.1  -3.33696   GGCTTCTGCAACGAA             CCCGGCC CGAG GGCCGGG              TTCGTCCGCCGCGAG  77 48
   Rpal_5230 5641187 .. 5641206 -  -5.6  -3.66378   GACAGCTCATTGAAA            CTGCGGAC GCTC GGCCACAG             CCATCGCCTGCTGGT  57 461
   Rpal_5228 5639752 .. 5639803 -  -5.7  -3.66772   GCAAACCGTTAACAA TCCGAAGCGAGGCCGCGCGCATTC GATGA AATTGCG-GCGACCGCGCCTCTGC CTTGACGGCCGTGGT  57 40
   Rpal_5227 5639341 .. 5639359 -  -7.3  -3.73953   ACCACGCTGATCAAA             GCGGCGG TGAAG CCGGCGC             CGGCCAGGAAGCCAT  65 187
   Rpal_5225 5637177 .. 5637190 -  -9.5  -3.54424   GGCGAGCCCCCGAAA               CCGCC GGGC GGCGG                CCGCCCTCAGCGCGT  68 32
   Rpal_5224 NONE
   Rpal_5223 5635085 .. 5635096 -  -5.8  -3.14344   CAGCCGTTCCAGGAA                CTCG TGAC CGAG                 TACTGCTGGGGCGCG  49 516
   Rpal_5221 5631814 .. 5631832 -  -5.2  -4.21194   TCTCACCAGCCAAAA             CGGCAAGT TCG ACCTGCTG             CTGACCGACATCAAG  69 452
   Rpal_5218 NONE
   Rpal_5217 5628878 .. 5628904 -  -2.9  -3.53444   CGATTTCGGGCGAAA        GGGAGTCCG-CC GGAT GGTCGAACCGCC         TGAGCGGTGCGGCGG  49 63
   Rpal_5216 5628041 .. 5628054 -  -2.3  -2.78266   AACGCAGGAAGATCA               CGATC ATCG GAACG                GTCCGATCAGTTGGC  39 32
   Rpal_5215 5627153 .. 5627177 -  -4.2  -3.81488   GCGCTGGAAACACAA         GGCTGCCGCGA CGTG CCGCTGCA-CC          AGCTCGCCGAAGCGC  57 86
   Rpal_5213 5625196 .. 5625206 -  -8.2  -3.18264   CCGCGCATCCATCAA                 GCGC GTA GCGC                 GTCTTCAAACAGTTG  58 108
   Rpal_5207 5616591 .. 5616642 -  -8.1  -4.06419   GCCTCGGACAAATAA CCGCGAG--ATTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAATGACTCCCGT AAAGGCTTCGCTCGC  73 134
   Rpal_5201 5602391 .. 5602407 -  -7.9  -3.28745   CGCCGAAGAACTGAA              GCTCGCC AAG GGCCAGC              CGGCGATGGCGCTGA  56 120
   Rpal_5199 5601263 .. 5601290 -    -9  -3.30124   CGTGATGGCGGACAA        GGCGAGCGG-CGC GAC GCGGCCCCGCGCC        TCGTTTGGTGATGAT  63 93
   Rpal_5198 5600232 .. 5600255 - -18.2  -3.14132   GGTGCGCCGGACGAA          CCTCTCCCCG CGTG CGGGGAGAGG           TCGACGCGCATCGCA  91 210
   Rpal_5197 NONE
   Rpal_5196 5598349 .. 5598369 -  -2.6  -2.87844   ATCAGAGAAGAGAAT           GCGAAGTTCG TGC CGA-C-TCGC           GACGCGTCGTAGCCC  40 46
   Rpal_5195 5597615 .. 5597646 -  -5.1  -3.53761   CAAGCCTGTTCGAAA     CTTGGTATCGCGCCC GGGC GGGCGCGAC-CCG-G      TCGGATCACGCCGCG  54 31
   Rpal_5193 5594290 .. 5594318 -  -7.4  -3.55444   GTCGCAGCGCCCAAA       GCGGTCACCAAGC TGCC GCC-GGTGATCGC        TACGACTCCGCTCCA  60 422
   Rpal_5174 5577691 .. 5577711 -  -6.1  -2.73875   CGGCGTCGAATACGA            GCGCATTCC GCC GCAATACGC            CACCCGGGAGCGCGT  47 301
   Rpal_5170 5574041 .. 5574059 -    -8  -3.06696   GTTGCCCCCAATAGA             GCCAGCGG CGG CGGCCGGC             AAGCCGCGACGCCGT  54 84
   Rpal_5169 5573309 .. 5573319 -  -2.4  -4.27316   GCGCCGAAGCCAAAA                 GCCC GGC GGTC                 GCGATGGCGGCTGTC  62 49
   Rpal_5167 NONE
        lysK 5568266 .. 5568291 -  -3.1  -3.83205   ATCTCCCAGATGAAA         GCCGCGACGGA ATCC TCGGTGTCGGC          GATCGAAGCGATCGG  56 356
   Rpal_5164 5565777 .. 5565815 -    -5  -3.17051   GCGCCACCATCAAGA   CCGGCGAGAGCTGCAACA TCT CGGTGCCGCTCACCGCGG   TGATCTACAACCCGG  47 299
   Rpal_5156 5554248 .. 5554272 - -15.7  -3.16564   GGGCGACGCGAGCAA          GGCGTCTCGGC CTC GTCGAGACGCC          CCCTCACCCGGTCCG  83 173
   Rpal_5155 5553776 .. 5553789 -  -5.9  -3.07816   CGCGCAGCGAGCGAA               CCCGG AATC CCGAG                CTGTTCTGCGACCGC  49 148
   Rpal_5154 NONE
   Rpal_5153 NONE
   Rpal_5152 5550660 .. 5550671 -  -2.2  -3.73072   AAGGCTCGGACGAAA                GACG AGCC CATC                 ATATTCACTCCGCAT  52 30
   Rpal_5151 5549030 .. 5549078 - -15.3  -2.67803   CGCTCACGAAAGTGA GCGAACCCGGAAGCCAGACGTTA TGA TCACCTCGAGATTCCGGGTTCGC GCCTGGCGGCGCGCC  77 62
   Rpal_5145 5540745 .. 5540758 -  -9.5  -3.56594   CTAAAGCTGCGTAAA               CCGCG TAGT CGCGG                AAACGTGGCATCGAC  68 47
   Rpal_5144 5538566 .. 5538586 -   -14  -3.55563   AGCGCACGCGCCAAA            CCTGCGGC TGGGC GCCGCAGG            TCGTCTTATTGCGCG  81 58
   Rpal_5143 NONE
   Rpal_5142 NONE
   Rpal_5141 5534200 .. 5534213 -  -5.2  -4.57073   GATGGGGGTGAAAAA               CGGC ACTCGG GCCG                AAATGGCGGAGAGAG  74 327
   Rpal_5131 NONE
   Rpal_5130 NONE
   Rpal_5129 5514810 .. 5514835 - -19.1  -2.60496   TCTTTGTTGAAATAG         CGACCGGCAGT CGTA ACTGCCGGTCG          AAGTTTGCGACGCGC  87 45
   Rpal_5128 5513977 .. 5514011 - -12.9  -3.08032   GTGCTCCGAAAACCA     GTCGCTCCGCTCGTC CTTGT AAGGAGCGGAGCAAC     GAAGCCCTTACTTCA  71 33
   Rpal_5126 5511633 .. 5511646 -  -3.1  -2.89742   TCCAACCGGGAGAGA               CGACGT CAG ACG-CG               GAACAGGCCGCGGCG  42 17
   Rpal_5125 5510692 .. 5510704 -  -2.6  -3.60792   GCGGGAACGTTCAAA                CCGG CCTCC CCAG                ATTCTTGCAGATGTT  49 46
   Rpal_5124 NONE
   Rpal_5123 5507524 .. 5507536 -  -6.2  -3.75153   CGCCGCGAATTGAAA                GCGG TTACT CCGC                GGCGCGGGCGACCTG  60 17
   Rpal_5122 5506032 .. 5506054 -   -22  -4.20806   GAGGCCAAAAGCAAA           CGGCCCGCGC AGG GCGCGGGCCG           TGAGAGTAATTCGTG 100 55
   Rpal_5121 5505219 .. 5505237 -    -3  -5.24129   TCCTGTGAGAAAAAA             CAGGACGC GCG GCGTCGTT             CGATAACAGAGCCGG  82 189
   Rpal_5120 5503405 .. 5503436 - -13.1  -4.13014   CTCAGACGGTGAAAA      CGTCAATGGCCGGG GCGAG CCCGGCCAT-AACG      TGGTTGAGAGAAAGA  89 93
   Rpal_5119 5501367 .. 5501398 - -16.7  -4.56597   CCCTCCCCCTAAAAA      CGTCGATGCCCGGC ACGAG GCCGGGCAT-GACG      CGGAGTCGAAGGGGG 100 55
   Rpal_5117 5500429 .. 5500442 -  -3.1  -3.89354   TCGCCAAATCAAGAA               GCTGCA ATC TGC-GC               GTCACATCAACACGA  56 27
   Rpal_5116 NONE
   Rpal_5114 5496296 .. 5496314 -  -4.5  -4.26327   GATCGACCAAAAGAA            CGGCAGCC AGCA GAC-GCCG             CGTGTGATTGCCAAT  66 82
   Rpal_5113 5494244 .. 5494283 -   -28  -2.88579   CGAAGCGCCCACAGA  CAGACAAGGCGCGGCGCC AGGG GGCGTCGCGCCTTGTCTG   ATGATTTCAAGCGGG 100 46
   Rpal_5112 5493792 .. 5493822 -  -3.8  -3.02511   GCGATCCGTTGAAGA       CGGCGTCCGACG GTCAAGG CGTCGGCCGTCT       TGCAAGATCACGCGT  45 40
   Rpal_5111 NONE
   Rpal_5110 NONE
   Rpal_5109 NONE
   Rpal_5108 NONE
   Rpal_5107 NONE
   Rpal_5106 NONE
   Rpal_5105 NONE
   Rpal_5104 NONE
   Rpal_5103 NONE
   Rpal_5102 5487719 .. 5487729 -  -6.8  -4.07568   TTCTTCCGTTCAAAA                 CCGT CGC ACGG                 CTCAGATGCGGACGT  67 522
        nifH NONE
   Rpal_5100 NONE
   Rpal_5099 NONE
   Rpal_5098 NONE
   Rpal_5097 NONE
   Rpal_5096 NONE
   Rpal_5095 NONE
   Rpal_5094 5479469 .. 5479487 -    -3  -3.28712   GTCGCGGGTGGAGAA             GATCGCCA TGT TGTCGCTC             CTCGCGCGGCCAATG  46 76
   Rpal_5093 NONE
   Rpal_5092 5478192 .. 5478218 - -12.2   -3.7732   GTCCGACATGAACAA         GTGCAACCGCTG TGC CAGCGGAGGCAC         AGCGGCAAACTACTG  78 245
   Rpal_5091 NONE
   Rpal_5090 NONE
   Rpal_5089 NONE
   Rpal_5088 NONE
        nifW 5473974 .. 5473999 - -19.7  -4.26903   CCCACCGCAGCAAAA         CGGCCCGCCGC GAAC GCGACGGGCCG          TCGATAGCAGGGCGC 100 54
   Rpal_5086 NONE
   Rpal_5085 NONE
   Rpal_5084 5470402 .. 5470423 -  -3.5  -2.71263   AATCCCGCTGAATTA           TCGCCACGC CCGC GCGAAGCGG            AACGCATCGCCGAAC  40 1
   Rpal_5083 5469943 .. 5469976 - -13.2  -3.85698   CCCTCGTCTTAGAAA     CGC-CAATGCCCGGG ACAAG CCCGGGCATTGTGTG     TTGTGTCATGAAGCA  83 118
   Rpal_5079 5466524 .. 5466534 -  -2.4  -3.15544   CGCCATGTTCATGAA                 GCGG CCT CCTC                 GTTGACGATTGACGG  43 46
   Rpal_5078 5465569 .. 5465604 -  -4.7  -3.51032   ATCCCGGAATGACAA   TGCGAGGCCGT-CAGTC GAGC GACAGCACGTCC-CGCA    CGCTGGCCGGCCAAG  53 0
   Rpal_5074 5461741 .. 5461759 -  -7.4  -3.36515   CTTCATGGCTAAAGA             CGGCGT GGTCTAT ACGCCG             GCGGCCAACGGCACC  59 291
   Rpal_5071 5457716 .. 5457755 -    -2  -3.36273   GCTGTCGAACAGCAA GC-TCATGCGCCGGACCG CCTATT CGG-CCGCCGCCAGACGC  GGCTGCGAACCGCAG  45 4
   Rpal_5070 NONE
   Rpal_5068 5454502 .. 5454530 -  -7.4  -2.66316   CCGTGCACCACATCA       TCGAGCCTGGGCCA CGC TGGCCC-GGC-CGC       AAGCTGCACACCCTC  50 169
   Rpal_5065 NONE
   Rpal_5064 5447977 .. 5447992 - -10.4  -3.73953   ACGAGGCCGAGGAAA              TCGCGG TGTG CCGCGA               AATCGGCGCCCTGGC  70 327
   Rpal_5060 5443514 .. 5443527 -  -3.1  -3.01712   TCCTGTTGCGCAACA               CCGCGT GCA AC-CGG               AAATATCGGGGCCTC  43 108
   Rpal_5059 5442150 .. 5442184 -  -6.3  -4.18934   GACGACGTGAAGAAA    CTCGCCGCCGACACCG AGGC CGGCATCGCCGCCG-G     CACCATCAAGCCGTT  70 366
   Rpal_5054 5437085 .. 5437104 - -11.4  -3.32647   GGCGAACGACAGCAA            GCGGCGCGG AAC CC-CGCCGC            GCGGGTCTTGCACAA  69 85
   Rpal_5053 5436343 .. 5436353 -  -3.2  -3.57263   ATCGTGAGCGTGAAA                 CGAT GAG ACCG                 AATATAGGAGAGCGA  51 239
   Rpal_5052 5434687 .. 5434713 - -18.1  -3.51232   CCCCTCTCAAACGAA         CAAGGGACGGC GCGAA GCCGTCCCTTG         CCGGAACTCACCGGA  95 56
   Rpal_5051 5434060 .. 5434083 - -19.6  -4.71426   TCGCTACGAACAAAA          GCCGCGCGGA GCGA TCCGCGCGGC           TTTGTCGTTTCAGAT 100 51
   Rpal_5049 5431369 .. 5431381 -  -6.2  -3.16564   GGTGCATTCGACCAA                CCGC CGGGC GCGG                CTGGACGTCGCCCTT  51 40
   Rpal_5048 NONE
   Rpal_5047 5429086 .. 5429120 -  -2.1  -2.79785   TGATACTCGAAGAAC     CCGCATTAAGGAC CAGCAGTAC GTCGCTCATGCGG     CACCTCCGGAAACGC  39 18
   Rpal_5046 5427785 .. 5427807 -    -9  -3.54424   TTGTATGCGGTGAAA           CGCAACCGGC CCG GCCGGGTTCG           CGAGGTCGCCCCCGG  64 138
   Rpal_5043 5424398 .. 5424434 -    -8  -3.29461   GAACTGCGCCTACAA   CGCGCTGT-CGGCA-GTC GCC GACCTGCCTTACGGCGCG   CTGCTGGCGATCGAC  56 339
   Rpal_5041 5422344 .. 5422378 -  -9.3  -3.76048   GTTCAAGCAATACAA    CCAC-ACCACCCCGAT CAGC ATCGAGGCGGTCGAGG     CCGAGCTGCGCAAGT  71 357
   Rpal_5036 NONE
   Rpal_5035 5417417 .. 5417457 -    -4  -3.23216   GGCGAGCAGGACGAA CAGCAGGCCGAGAACGATCA GGG TGGTCATG-TCGGCC-GCCG TTATTCGAAGGACTT  47 26
   Rpal_5034 NONE
   Rpal_5033 NONE
   Rpal_5032 5413253 .. 5413289 - -13.8  -3.05384   GTCTGGGTCACCGAA   GCGCGCTGCGCGATT-CC GGT GGCAATCGCGCTGCG-GC   AGTCGCTGATCGAGC  72 406
   Rpal_5028 NONE
   Rpal_5027 5408495 .. 5408514 - -13.6  -2.70932   TCCCTCCCGGAACGA            CCAACGGG CCCG CCCGTTGG             CCTGCATCGGTGCGA  72 425
   Rpal_5025 5408007 .. 5408031 -  -4.2  -4.07568   CCTGTGCCCGCAAAA          CCGGGTCGAA GTCCG CTAAACCCGG          ATCACCAGCTCTGGC  61 27
   Rpal_5024 NONE
   Rpal_5023 NONE
        hisD NONE
   Rpal_5021 NONE
   Rpal_5020 5403290 .. 5403336 - -13.7  -2.57132   GCCGCGCTCCACAAG CTCGGGATTCCGGGTTCGCGCC TGGC GGCGCGC-CCCGGAATGACGAA TGTGGAGGCCAGTAC  71 365
   Rpal_5019 5401905 .. 5401915 -  -2.4  -3.28712   CGCGTGCCGGGACAA                 CAGG CGC CCGG                 CACAGGGCAGGACAC  45 41
   Rpal_5018 NONE
   Rpal_5017 5400924 .. 5400938 -    -7  -3.53012   CCGCCCGGTTCGAAA               CCGGGG GAG CGCCGG               GTTATAGTCAGACAC  57 126
   Rpal_5016 5399460 .. 5399476 -  -2.1  -4.68908   GCGACGCAAAACAAA              GACCGGC TGT GACGGTG              TCAGATTGCTGCAGT  72 250
   Rpal_5015 5398930 .. 5398944 -  -2.7  -2.73676   GTGAAATGAAACTGA               TCGGC CGTTT GCCGC               GTCGGCTGCAACATC  39 100
   Rpal_5014 5397512 .. 5397544 -  -8.9  -3.76402   ACCTGACCGAGGAAA      CCGTTGCCGCCGCGC AAG GCCATGCGGCGACGG      AGACCCGATCGATGA  69 478
   Rpal_5012 NONE
   Rpal_5011 5395365 .. 5395381 -    -5  -3.54919   AAGGAGCTGTTCAAA              GGCGCC AGGAA GGTGCC              GCGCGAGACGCTGTT  52 147
   Rpal_5009 5394076 .. 5394090 -  -4.2  -3.56821   ACGAGATGGCGGAAA               TCAGTC GGC GACTGC               GGCTGCGCAATGTCG  51 383
   Rpal_5005 NONE
   Rpal_5004 5388680 .. 5388699 -  -4.3  -3.53012   GCTGTCCGGCTGAAA            GTCAGCTC TCGGT GAGCTG-C            TTCAAGGTCGCCAGC  51 7
   Rpal_5002 5386246 .. 5386275 -  -8.6  -4.63218   GTCTCCCTAAGAAAA       TG-GATGGCCGGG TCGAG CCCGGCCATGACA       CCTGACTTGGGGCTC  86 45
   Rpal_5001 NONE
   Rpal_5000 5383635 .. 5383655 -  -3.1  -3.12668   CAGGGCGATATTCAA            CCGGCAGCA ATG CGCTGAAGG            GCTAGTCCGGGCAGC  44 27
   Rpal_4999 5381654 .. 5381689 -    -6  -2.78384   TGTTGTTCCACTACA    CGCTACGGCCGCGCCCA TCA CGGGCGCGGGCCTA-CT    CCGCCCTCGCCGTCG  46 70
   Rpal_4998 5380794 .. 5380812 - -12.4  -3.48924   TGACGTTGGAGAGAA             GGAAGCGC TTC GCGCCTCC             TTATCATGAGCGTCG  74 44
   Rpal_4997 NONE
   Rpal_4996 5377702 .. 5377751 - -15.7  -3.35798   ATCTCGTAGCGACAA CGACGGGATTCCGGGTTCGCGCGT TGC ACGCGCGC-CCCGGAATTACGTTG CGAGGCTTTGTCTAA  84 82
   Rpal_4995 5377217 .. 5377232 -  -4.8  -3.21276   CGCGGGCTGAGAAGA              TTTGAT TTGG ATCAAA               TGAGGAGGCGCCCGC  48 162
   Rpal_4994 5376398 .. 5376425 - -20.6  -4.56914   GCATCCAAATGAAAA        GCGCGAGGCGGA TCGC TCCGCCCCGCGC         CGTGTCTTGAAGCCA 100 47
   Rpal_4993 5375817 .. 5375835 -    -6  -3.06183   CGTATTCGCACGCAA             CTTCCG CCCCAAT CGGAAG             ATCGGATTTCGGTTC  49 285
   Rpal_4991 NONE
   Rpal_4990 5371676 .. 5371711 -  -9.6  -2.77899   TCCGCTGAGCAATCA    CCGGCCACG-GCGGCCG AAA CCGCCGCTCGCAGCCAA    ATCGCATCACGCCAT  57 250
   Rpal_4978 5357774 .. 5357789 -  -3.2  -3.28791   ACCGTTTCTGGACAA              CCGTGA GCGA CCACGA               CGTCAATATAGGTAT  46 50
   Rpal_4977 NONE
   Rpal_4976 5355777 .. 5355817 -  -2.5  -3.17075   GGCCGCTCAATGGAA CCCGGCGCATGGCCGACGA TCAGT TCGCCGGCCA--CGCTTAG CTCACGCGGCTCGTT  43 27
   Rpal_4975 NONE
   Rpal_4974 NONE
   Rpal_4973 5352505 .. 5352543 -  -4.5  -3.39505   ATGCGACAGCGAGAA  CTCGACGAGA-CGGGTCA GCAT TTACTCGACCCCGCCGAG   TCCCTGCCAGGCGCC  48 8
   Rpal_4972 NONE
   Rpal_4971 5349058 .. 5349079 -  -5.1  -3.48276   TCGGGGTGGAGAGAA           TCATGCTCT CCGC AGAGCTCGA            AAGGCGAAATTATTC  53 74
   Rpal_4970 5347633 .. 5347643 -  -3.2  -3.62597   GGCAGCCTTGAACAA                 CGAC TTC ATCG                 TACTCCTCCCGGACG  51 255
   Rpal_4969 5346943 .. 5346965 - -11.2  -3.80841   ACGACGACCATGAAA           TGCGCCGTCA CGT CGCCGGCGCA           GCGCTGATGGGGTTC  77 249
   Rpal_4965 NONE
   Rpal_4964 5343732 .. 5343761 - -14.3  -2.61106   CATATTCACAATGGA       TTCC-GGGCTCGCG CTT CGCGCGCCCCGGAA       TGACGAGTTGCTACA  74 36
   Rpal_4960 NONE
   Rpal_4959 NONE
   Rpal_4958 5338362 .. 5338386 - -10.6  -3.09933   CGTGAATGTATGGAA          CGCACCGGTC CGCTC GTCCGGCGCG          GATCAGGCACCGGAG  62 28
   Rpal_4957 NONE
   Rpal_4956 5336079 .. 5336102 -  -3.7  -4.23999   CGAGATCCAAAAGAA          GCGTTCCTC GTCTTT GCGGCACGC           TCGACTGTGACCCGT  63 208
   Rpal_4955 NONE
   Rpal_4954 NONE
   Rpal_4953 5333165 .. 5333207 -  -6.2  -3.54424   TCGTAGCTCCGCAAA TTCATGCGCAGGCCGACGC GCGAAG GCGCCGGCCCGCAG-TGAC GTCAGGAGAAGATGT  57 27
   Rpal_4952 5331881 .. 5331893 -  -4.8  -3.17763   CGCACATTCGATCAA                CCGA ATATA TCGG                TGGTCATTCCGATAT  48 9
   Rpal_4951 NONE
   Rpal_4950 5330494 .. 5330534 - -10.9  -3.24747   GGTCGAGATCACCAA  GGTCGCTGCCAAGCGCGCG GTG CGCCGGCTGGTCAGCGGCC  CAGTCAAGGCCACGG  66 454
   Rpal_4948 5329788 .. 5329800 -  -9.1  -3.13906   TCGAATCCAAAACGA                TCGCG GTG CGCGA                GACCTACCAAGCCTA  59 307
   Rpal_4946 NONE
   Rpal_4945 5327707 .. 5327740 - -12.5  -2.96984   GAAAGGCAGTAGAGA     TTCCGGATTCGCTCAC TGC GTGAGCGC-CCCGGAA     TGACTTCGGAAAAGG  71 58
   Rpal_4940 NONE
   Rpal_4939 NONE
   Rpal_4938 NONE
   Rpal_4937 5318485 .. 5318533 -  -8.8  -3.60839   AAAACCAAGAAGTAA TCA-GGCGTAGCGCGGGCGCCGAC ACT GTCCGCGCCGACGCC-CGCAATGA ACTCAATTCGGTGGC  65 57
   Rpal_4933 5313549 .. 5313566 - -14.1  -4.10657   CCAGAGTTTCGAAAA             GCGCCGG TTCG CCGGCGC              TTTTTTTATTGGGCG  93 304
   Rpal_4931 5311259 .. 5311284 - -13.9  -3.18681   CGGCAAGCTCATCAA         GCGCGGCCGCC CGAA AGCGGCGGCGC          CGAAGCAACTGGTAT  76 244
        metX NONE
   Rpal_4924 5305161 .. 5305171 -    -4  -3.60805   AGATTTTAGGGGAAA                 TTTC GAG GAAA                 TTTCATGATACGCAA  53 106
   Rpal_4923 5304177 .. 5304189 - -10.5  -3.24232   CTTCTTCGAAAGAGA                CGCGC TTC GCGCG                TGATGGATGCGCGGG  64 123
   Rpal_4921 5300058 .. 5300094 - -12.2  -3.14132   CCTGCCGCCGACCAA   CATGCCGACCGGCGTCG GTGT CGGCGCTGG-CGGCACG    ATCTACGTGTCGTCC  69 357
   Rpal_4918 5289156 .. 5289181 - -16.9  -3.62096   GGCCACCACGGCAAA         CGCCGCCTCTC AATC GAAAGGCGGCG          TTGCTGGAAAGACCG 100 55
   Rpal_4917 NONE
   Rpal_4916 5285409 .. 5285437 -  -2.4  -3.04144   TTTCGAGTTGGAAGA       CCGCCA-G-CAAGA TTT TCATGACGCGGCGG       TTGGTTCGCGACCGG  41 127
   Rpal_4915 5284849 .. 5284863 - -12.8  -2.65442   ATAGCACCGAGATTA               CGCCCG CCG CGGGCG               GTCGGCCACCCGATT  67 41
   Rpal_4914 5283937 .. 5283948 -  -5.8  -3.01712   GCTGGCGGGTGAAGA                GCGA TCAC TCGC                 TGCTGCAGGGCATGC  47 361
   Rpal_4910 5281180 .. 5281191 -  -5.8  -2.79133   GAAGCTTCGATCAGA                CCAC AGGC GTGG                 TGCGCTCATCACTCC  46 9
   Rpal_4909 5280231 .. 5280246 -  -5.4  -3.64703   TCCTGCGGACGGAAA              CGTC-GC GGT GCAGACG              CTCAATGCCACACGA  55 110
   Rpal_4908 5278387 .. 5278437 -  -8.3  -4.17048   CCGTCGTGAAAACAA TCTCGG-GATTCCGGGTTCGCTCAC TGC GTGAGCGC-CCCGGAATGACCGTTA GGTCGTAGTTACGAC  76 34
   Rpal_4906 5276187 .. 5276202 - -11.8  -3.04792   TCAGTAGGTGCAAGA              CCGGCC CTCG GGCCGG               TCTTCGCATGTCTGG  68 68
   Rpal_4904 5272857 .. 5272876 -  -3.5  -3.10715   CCGAGGACGATCGAA            GGC-GCCG CCGGC CGACAGCC            GAGGTCGGATTCTAA  43 61
   Rpal_4903 5272234 .. 5272285 -  -7.3  -3.17075   TTGCGTTCAAGGGAA CTGTCGACTGATCTCTGACGATT GTCAAT AATCGTCAGAGATCATGAGTCCG TGACGGAGGCGTCGG  56 66
   Rpal_4902 5271106 .. 5271116 -  -2.4  -3.47078   CAGCGCAGATCAGAA                 CGTC AGA GCCG                 ACACCACCCGCACCT  47 9
   Rpal_4901 5267944 .. 5267966 -  -6.3  -2.78868   CAAGATATTCAATTA          TTCCGC-CGC GTCG GCAAGCGGAA           AGGCGTTCGGGCCAC  49 0
   Rpal_4900 NONE
   Rpal_4899 5266605 .. 5266640 -  -3.9  -3.78736   CACACAGGTATCAAA    GGCGTGGATGGCCGGG ACAAG CCCGGCCATG-ACGTG    AGCGAAGTCCTTTGC  56 59
   Rpal_4898 5265545 .. 5265563 - -13.1   -4.8622   TCCTTGAATGAAAAA             GCCCGGC ACAAG GCCGGGC             TTTTGGGAAACTAGC 100 457
   Rpal_4896 NONE
        glpD NONE
   Rpal_4894 5261229 .. 5261245 -  -2.2  -2.82987   GCAAGATCGACGAGA              TCGATG CGCGC CATCGG              GCTGTCCCCTCAGAT  40 35
   Rpal_4893 NONE
   Rpal_4892 NONE
   Rpal_4891 NONE
   Rpal_4890 5258102 .. 5258121 -  -4.9  -2.78384   TTCGCCGGGATCAGA            CGGTGCG GAAGAT CGCAACG             GCCGAGACCAACGAC  44 1
   Rpal_4889 5256182 .. 5256201 -   -15  -4.88407   GGACGCAATGAAAAA            GGCCGGGA TCGC TCCCGGCC             TTTCGCGTTCTTGGT 100 58
   Rpal_4878 NONE
   Rpal_4877 5242127 .. 5242174 - -19.8  -4.07687   AGGGCCCCCCGAAAA CGACGATGGCGGCCCTGCCGGG TTGC CCCGACAGGACCGCCAAAGTCC TTGGACGTCTTCTAT 100 90
   Rpal_4876 5241084 .. 5241102 -  -4.5  -3.85698   CGCTCGCGGCACAAA            CGGCTGAC CGAC GCC-GCCG             ACCTGATTGCCCTGC  58 346
   Rpal_4874 5239821 .. 5239832 -  -3.6  -3.17051   CGGTCACCAGCAACA                CGAG GGAA CCCG                 GATGGTCAAGTTCGG  44 66
   Rpal_4873 NONE
   Rpal_4872 5237372 .. 5237395 - -18.2  -2.88579   TGAAGTCGCCACACA          GCAAGGCGCG TCAG CGCGCCTTGC           TCCAATCCGGGCGGA  90 12
   Rpal_4865 5229823 .. 5229835 -  -3.4  -3.19642   ACCAGGACTCAGGAA                CGTT TCAAG AACG                CAAATGGTCGATGGC  44 66
   Rpal_4864 5229064 .. 5229084 -  -3.2  -2.53213   GAAGGCCTGAAGCGA           GGCGCCGTG GGCT CA-GCCGCC            GCGCAGCGGCGGCAC  39 17
   Rpal_4863 NONE
   Rpal_4862 5227314 .. 5227332 -  -2.3  -3.75153   TGCGCCGAACTCAAA            GCTCAGGC GGAA GCCGG-GC             CGATAATGCTGATGA  52 109
        ileS 5224086 .. 5224116 -  -9.7  -3.21099   TCGCGGCACGACGAA      GCGTC-GTCCCCGC GCAG GCGGGGACCGATAC       GCCGTGTCGGTCATG  61 128
   Rpal_4860 NONE
   Rpal_4859 5222665 .. 5222704 -  -4.9  -3.16742   GGCAAGGCGCAGCAA GCCGTCGGC-AGCG-GCAC TGAC GTGCACGCTTGTCGGCGGA  CGAGAGATGGGAATG  48 90
   Rpal_4858 NONE
   Rpal_4857 NONE
   Rpal_4856 5219173 .. 5219208 - -11.8  -2.64155   CGCTCGCTAAAGCGA    GCGACCCTCC-CCCTCC AGG GGAGGGTGAAGGGGCTC    AATCATCGAAGCTCT  65 24
        mutL 5217100 .. 5217148 - -23.3  -2.56596   GCGCTGACGAAGTCA GCGAACCCGGAATCTCGCTCCGC AGA ACATATCGAGATTCCGGGTTCGC GAGCTCCGCTCGCAC 100 62
   Rpal_4853 NONE
   Rpal_4852 5214366 .. 5214393 -  -4.8  -3.57144   TCGTGCATGGTGAAA        GGCCGTG-CTC ATGTTTG GAGGCCCGGCC        TACGGCGCCGCCACC  55 25
   Rpal_4851 5212561 .. 5212580 -    -7   -3.3482   GAACTGGCGAAGTAA            GCGGGCGC TTCC ACGCCCCC             CCACGTCATCGCCCG  55 171
   Rpal_4847 5209770 .. 5209799 - -14.3  -3.00498   CACAGGGGATATAGA       TTCC-GGGCTCGCG CTT CGCGCGCCCCGGAA       TGACGGAATAGTTCG  78 42
   Rpal_4841 5204088 .. 5204102 - -12.8  -3.99805   CTGTAAAAAGTTAAA               GGCCGC AAA GCGGCC               CATTGCACACGTCGC  86 277
   Rpal_4840 5203336 .. 5203348 -  -6.9  -2.54574   CAGCCCAACGAACAG                CCGCA TGA CGCGG                AACCCCGCGCCGGCT  48 40
   Rpal_4839 5202687 .. 5202714 -  -6.3  -2.82623   CTCTTCGCACAATGA        TGGATCGCCGGG TCGAG CCCGGCGATG-A        CGCACGTTACTTGTC  49 32
   Rpal_4838 5201422 .. 5201451 - -14.3  -3.00022   TGTAGCGCACAGAGA       TTCCGGGTTCGCGC TTC GCGCGC-CCCGGAA       TGACTCGCTGAAAGG  78 70
   Rpal_4836 NONE
   Rpal_4835 5199910 .. 5199926 -  -9.4  -3.10474   CACAACATCTTAATA              TCCCGG CCGTT CCGGGA              TCGTCTCGGGCAAAA  60 90
   Rpal_4834 5199605 .. 5199626 - -10.1  -4.61566   CTTGAAACGACAAAA           GCAGCCATC GCGA GGTGGCTGC            TTTTTTGCGTGCTAT  95 95
   Rpal_4830 5195989 .. 5196011 - -17.7   -5.4505   GGCCGCAACAAAAAA           GGGCGGCGC ATGCG GCGCCGCCC           TTTTCAATTAGCTCG 100 96
   Rpal_4829 5195034 .. 5195044 -  -8.2  -3.28912   CGATATCGACATCAA                 CCCG GCT CGGG                 TCAACGACATCGTGC  58 321
   Rpal_4822 NONE
   Rpal_4821 5187273 .. 5187323 -  -5.9  -3.61715   TACCTGCCGCAACAA CCTCTGGATTCCGGGTTCGCGCCC TGGC GGGCGCGC-CCCGGAATGACGTGC GTGAAGGGGCCCCCT  57 39
   Rpal_4820 5185981 .. 5186015 - -17.3  -3.26947   CAAGCCGGAGATCAA    GCTGGCGATGCCGCCGA CCT TCGGCGGCA-C-CCAGC    GGCTGCCGCGCCTCG  86 354
   Rpal_4814 5181621 .. 5181658 - -11.1  -3.15544   CGCGACGCCGAGCAA   TCGGTGCGGCGGATGTGC GAA GC-CGCCCGCCGCGCCGG   CATGCGCGGCGCGAT  64 108
   Rpal_4809 5176741 .. 5176771 -    -9  -4.84359   CGACGGCGACAAAAA       GGAAGCGTCTTGTC CAA AACAAGGCGCTTTC       GCAGTTTTGGAACGA 100 75
   Rpal_4808 5176123 .. 5176142 - -16.4  -4.70659   GTCCAGACGCAAAAA            GGGCCCGC GCTG GCGGGCCC             TTTTCGTTACGACGC 100 64
   Rpal_4807 5175396 .. 5175429 - -17.5  -4.84274   CAAGGACACCAAAAA     TTTGCGCTGCGACGC GTTT GCATCGCAGCGCAAT      GTTGCAAAACAGGAA 100 64
   Rpal_4806 5173105 .. 5173141 - -23.9  -5.38326   TCAAGCAAATAAAAA    GCGGCTGGAGTGATGTC TGA GACATCAGTCCAGCCGC    TTCGCAGCAGTCATA 100 89
   Rpal_4805 NONE
   Rpal_4804 5170944 .. 5170991 -  -9.1  -4.19238   GCGTCAATCGCAAAA CGC-G-CCGCCGCGACG-GAAGTC GGT GGCCTCACGCCGAGGCGGGCTGCG GCGCGGTCGCCTCCT  79 6
   Rpal_4803 5169682 .. 5169730 - -13.8  -3.04792   CGATCATCTGCAAGA TCGCGGTACGCGCCGGATTCGA ACCGG TCGAAGCCGGCACGCTCGACGA GGTCGTCGAGCTGAC  72 329
   Rpal_4799 5166862 .. 5166916 - -12.3   -5.0538   GGGGACTTCAAAAAA TGTAATCAA-AGATTACGCCGCCGAC CTCG GCCGGCGGCGTAATCTGCTGAAAATA CAGCCTTATCCGACC 100 59
        glmM 5165286 .. 5165307 - -10.8  -3.33171   CGCAATAACGACGAA           CGGCCGGC ACGTTG GCCGACCG            CTCATAAATTAGTTC  69 114
   Rpal_4797 5163888 .. 5163916 - -15.3  -5.86061   GCGCACCAAAAAAAA        TGGCTCCAGTTCC ATC GGAACCGGAGCCG        TGATTTGAGTGGATC 100 68
   Rpal_4796 5162721 .. 5162743 - -20.6  -5.03994   TCCGACACAGAAAAA           CGGCGCGGGA AGC TCCCGCGCCG           TTAAGACTTGTAAAC 100 56
   Rpal_4795 5161802 .. 5161815 -  -3.8  -2.87132   CTGTCTCGCGACACA               GAGC TGACCC GCTC                GCCGCAACAACCATC  44 47
   Rpal_4794 5161168 .. 5161184 -  -2.2  -2.72344   CGGGATCGGCAATCA              TGTGAG ACGGG CTCACG              AACTGAAAGCAGGCA  39 21
   Rpal_4793 5160647 .. 5160663 -  -7.3  -3.53224   TACCCCGCCGTTAAA              CTGCTAC TCA GTAGCAA              TACCGGGTTATGATG  60 60
   Rpal_4792 NONE
   Rpal_4791 5158445 .. 5158457 - -10.5   -3.5032   GGCGCAGACGAAATA                CCGGC ACC GCCGG                AGTTCTGCGGTAACG  68 290
   Rpal_4790 5156828 .. 5156847 -  -4.2  -3.40073   AGGGTGACTAATCAA            GCCGC-CTG AGT CAGCGAGGC            CTTGGTGGTCTCGAA  51 2
   Rpal_4789 5154966 .. 5154993 - -20.6  -4.87133   AGCGTGCAAACAAAA        GCCCTCCCCCCG TTAC CGGGGAGAGGGC         TTGATGTCGTCGTGC 100 97
   Rpal_4788 5153065 .. 5153104 - -16.4  -4.06419   CGCCCTTAGAAACAA  CGACGCCCCTGGCAGACC GTCG GATCTGCCAGGGGCGAAA   ATAACGTTGGCGGGA 100 56
   Rpal_4787 5151228 .. 5151268 -  -3.8  -3.08046   GCTGGAGGCGAAAAG GTTCAAGCCCGGCG-CGCG ATCA CGCGGCGCGGATCTTGCGC  AGGAAATCGTCGACC  45 4
   Rpal_4786 5150653 .. 5150703 - -11.7  -2.60244   GGGCGAAGGAACTCA CTGTGTCGTTCCGGG-GCACGCGC ATCA GCGCGTGAACCCGGAACCTCGCGG TGCCGATCCGTGGCG  65 147
   Rpal_4784 5147993 .. 5148017 -  -6.4   -2.9953   TGAACGAGAACGACA         TG-GGGCACTC CAAG GAGAGCCCTCA          GACTGAGCGTCCGCC  51 131
   Rpal_4783 5145737 .. 5145774 - -15.6  -4.13014   CTTACACCCTCAAAA   TACTACGGCGCCGCCGT GCAAG ACGGCGGCGCCG-AGCG   CGTAACCGCAACTGA 100 52
   Rpal_4779 5143497 .. 5143510 -  -9.5  -3.09492   CGCGCAAGCCGAAGA               CGGCG TGAG CGCCG                AGGGCGCTACTTGAC  60 32
   Rpal_4775 5139809 .. 5139853 - -12.2  -2.60079   GCACCGGATAACGGA TGCAG-GCTTGCGACGCAAGCG AAA CGCCTGCGCCACG-GCGCTGCA ACGCATTGTATCCCC  65 136
   Rpal_4774 NONE
   Rpal_4773 5136569 .. 5136585 -    -5  -3.82604   GTAGCGAAGGAAGAA              GCAGCG AGGTG CGCGGC              CGGCGCCGCGCAATG  60 174
   Rpal_4766 5131977 .. 5132027 -  -8.9  -3.32946   CGCCTAAGCAGAACA CTGCGAGATTCCGGGTCTGCGTGC TTTC GCACGCAT-CCCGGAATGACGGTG CCTTTTGGCGAGCGT  60 126
   Rpal_4762 5128585 .. 5128606 -  -4.4  -3.01712   CGGCGCCGGGCAAGA           GCTGAAGC CGCGGC GCCTCAAC            CCCGCGGGCTCTGGG  45 21
   Rpal_4759 5125249 .. 5125264 -  -8.2  -3.05384   GGCGCGGCTATCGAA              CGCCGC GGAA ACGGCG               TCCCCTTGCCAGCGT  57 2
   Rpal_4754 5119218 .. 5119250 -  -9.1  -2.62983   CTGATGCTGATACCA     GCGGGC-GCGCGCGC ATGCG GCG-GCGTTGCCCGC     AAAAGCCTTGCGTGA  56 463
   Rpal_4753 5118625 .. 5118642 - -12.7  -3.75738   GACGAGGACGAAGAA             GGCGGCT TCTG AGCCGCC              GACCCTCACGGTCAT  81 199
        ispH 5116663 .. 5116685 - -12.6  -3.72576   CGGGGCGCGATGAAA           GGGCGCCCCC GGG GGAGGCCCCC           GGGTCTTGCCGGTTA  81 38
   Rpal_4750 NONE
        rnhA 5114811 .. 5114830 -  -8.6  -4.27117   GCTCCAGAATACAAA            GAGCGCGAC ATC GTC-CGCTC            CGTCCCGAAAACCAA  76 346
   Rpal_4743 NONE
   Rpal_4742 NONE
   Rpal_4741 NONE
   Rpal_4740 NONE
   Rpal_4739 NONE
   Rpal_4738 5100000 .. 5100040 -  -6.2  -3.65351   TCAGCGCGACCGAAA TGGTGGCGGTG--ATGATCA TCC CGATCATGGCGCCGCCTCCA CCTTGACCCGGCGTA  57 9
   Rpal_4737 NONE
   Rpal_4736 NONE
   Rpal_4735 NONE
   Rpal_4734 5097730 .. 5097746 -  -4.3  -2.79684   GGACGAAGGGAAGCA              GATGCGC CAT GCTCACC              CCTTCAGCCCGCTGA  42 21
   Rpal_4733 NONE
   Rpal_4732 NONE
   Rpal_4731 5092829 .. 5092852 - -18.2  -3.09516   GGCTGCACCATCTAA          CCTCTCCCCG CGCG CGGGGAGAGG           AGAGCGCGGCTACGG  90 35
   Rpal_4723 5084512 .. 5084522 -  -8.2  -2.71712   CCGTCGCGCGGAAAC                 GCCG GCT CGGC                 CTATGGCTAGTTTCG  54 253
   Rpal_4722 5082352 .. 5082377 -  -7.5  -3.01712   CGGCTCCCGGCAACA         GCCTACACCAC TGAA GTGACGGAGGC          GGTGTATCGCGGTCT  53 365
   Rpal_4720 5080433 .. 5080443 -  -5.4  -2.80307   GAAATGTGTACGACA                 GTTG CTG CAAC                 AAGCCAATGTCGGGC  44 75
   Rpal_4719 5077370 .. 5077426 -   -10  -3.68725   AATCTGGAAGAAACA CCGCGAAGCCTG-CCGGGTGGCGCGGC AGCG GCCGCACCAGCCGGACAGCCTTGGTCA TCTGGTGCACCGTCC  70 229
   Rpal_4717 NONE
   Rpal_4716 NONE
   Rpal_4715 5073460 .. 5073511 -  -7.3  -3.12351   GGTCGCCAGACTGAA CTCTCCTGGCGC-GCAT-CGCCGTC AACT GACCGCCCACTCTGCGCCAGAAGAG TTAATATGTCGGCAA  56 416
   Rpal_4713 5072638 .. 5072666 -  -4.3  -2.87132   CCGGGCTCGGAGATA        GGCCGGCGTTTCG TCG CGCATCGGTGGCC        TCGGGTGGGATTCCG  44 70
   Rpal_4712 5071126 .. 5071143 -  -3.3  -3.72576   GCTTGGCTCAGGAAA             TGGCG-GC TTG GCGCGCCG             TTCCGGCCGACGACC  53 302
   Rpal_4710 5068506 .. 5068520 -  -7.8  -3.64028   AAGCGAAAGCAAAGA               CTGCGA AGA CCGCAG               CGAAGTCGAAGAAGG  63 339
   Rpal_4708 5066336 .. 5066348 -  -5.5  -3.09492   GTTCGAATTCCAAGA                GCGGT TCA ACCAC                GCCCGACCTCTTTTC  49 124
   Rpal_4707 5064453 .. 5064469 -  -9.3  -2.82623   TCCCCTGGACAATGA              GCGGGGC CAA GCCTCGC              GAGCAGATCGAGATC  57 85
   Rpal_4704 5062545 .. 5062575 - -16.8  -4.42806   CGATCTCTAAATAAA       TAACGCCGCCCGGC GGA GCCGGACGGCGTCG       TCTTCTCAGGGACGT 100 55
   Rpal_4703 5061788 .. 5061809 - -12.3  -3.65351   CCACTCTTACGCAAA           CATCCGCCC TGCG AGGCGGATG            TCGGTATCAGCTTGA  75 51
   Rpal_4701 NONE
   Rpal_4700 5058876 .. 5058887 -  -7.2  -3.22102   AGAGCTTCGACAAGA                GCCG GCAA CGGC                 ACAGCAAGCGCCGCA  56 68
   Rpal_4699 5058580 .. 5058600 - -18.3  -5.26119   TGCCGAAAAACAAAA            GGCCGGGCA GAT TGCCCGGCC            GGATTGCTGGCTTAG 100 37
   Rpal_4696 NONE
   Rpal_4695 NONE
   Rpal_4694 NONE
   Rpal_4693 5051499 .. 5051539 -  -8.2  -4.32951   AGGTCAATCAACAAA  GACAGCCCCGTCATTGCG AGGAG CGCAGCGACGAAGCAATC  CATGCCGCACGCGGG  79 86
   Rpal_4692 5050035 .. 5050045 -  -8.2    -3.406   GGAAGACGCAACCAA                 GCCG ATC CGGC                 CGCGTTGCACCATAA  63 499
   Rpal_4690 5048653 .. 5048689 - -12.2  -4.26903   TTGAGGGCATCAAAA   CGGC-AACGGCCCGGAC TTGC GTCCGGGCCGCGAGCAG    TCGCCGTGGAGGTTC  91 39
   Rpal_4689 5047873 .. 5047908 -  -2.3  -3.63515   TCGCACCTCGAACAA    GACGCGGGCAACTTG GCCATG CGCGGCGCCAGCGTC     AATTGCGCCAAGGGC  49 61
   Rpal_4688 5046691 .. 5046709 -    -8  -3.87815   CGCGAGGTTGAGAAA             GCGGCGCA GAT CGGGCCGC             TTATTCGAATGCATC  68 26
   Rpal_4687 5045434 .. 5045456 - -11.2  -3.28708   CAAAGGCTAGATTAA           GCGGTCTGCC CGC AGCTGACCGC           CTCACCGCCTCGCGC  69 442
   Rpal_4684 5043561 .. 5043571 -  -3.2  -2.91276   TTTTTCCTGACAAAC                 GCGA CTG TCAC                 ATTAGGCTATCACAT  42 40
   Rpal_4683 NONE
   Rpal_4682 5041429 .. 5041442 -  -2.3  -2.73364   GTTGCAGCTGAACGA               GCGCT GACG AGCGA                GTTCATCTAGATGAA  39 118
   Rpal_4681 5041007 .. 5041024 - -14.1  -3.52073   CCGTGAACATGACAA             CGGGGCC CGCG GGCCCCG              TCATTGCTTGCATCA  79 72
        rpmJ 5038053 .. 5038073 - -18.3  -4.04318   TGTAGACACGACAAA            GCGCGCTGC AAA GCAGCGCGC            GCGTCACACCGGCGT 100 79
   Rpal_4676 NONE
   Rpal_4675 NONE
   Rpal_4674 5035666 .. 5035721 -    -6  -4.05788   CGCCCGCAAACCAAA TCAGCGGTCGT-CATTCCGGGCACGCG TAG CGCGAGCTCGGAATCCATAACCACCGC CTGATTTGCTGCGCC  65 171
   Rpal_4671 5032980 .. 5033004 -  -9.2  -4.12902   TAATGATTGGGAAAA         GCG-GCGGGGC GGTC GCCTCGCGCGC          CGCATCTGCGCCGGA  79 155
   Rpal_4670 5032578 .. 5032598 - -11.8  -5.47218   TCCGATCCAAAAAAA            CGCCCGGG CTGGT CCCGGGCA            TTTTTATTTTTAGCG 100 101
   Rpal_4665 5023515 .. 5023527 -  -5.5  -3.85698   GTTCTTGGCCAGAAA                GACGA CCA TCGCC                ACGAAGGCGATCTTG  62 80
   Rpal_4664 5023361 .. 5023374 -  -8.1  -2.52896   GCACGCTCGAAGCGA               CGACG CGAC CGTCG                ACCGCGCGTCAGGCC  53 34
   Rpal_4663 5022912 .. 5022930 -  -9.5  -2.87211   ACGTTCTCCGAGAGA             GCGCCGC GTGTA ACGGCGC             ACTCCAGGACAGATC  58 39
   Rpal_4662 5021588 .. 5021599 -  -4.4  -2.90194   ACCGCTTGAACCATA                TGCT CCAT AGCA                 ACTCTCCTTAAGCGG  44 47
   Rpal_4661 NONE
   Rpal_4660 5019807 .. 5019828 - -18.7  -5.61881   GCCGAAAAACAAAAA           CGCCCGGCC TTGC GGCCGGGCG            TTTCGTTTCTGGCAA 100 52
   Rpal_4658 5018720 .. 5018777 -  -8.5  -3.18912   TGATTGAGGGATCAA CTGCGA-CCGATCGGTGGCA-TCGGAAC GAGGT GTTCGGTGCGCCACCGAGCGGGTCGC-G AGGCGAAGCTGGGCC  58 59
   Rpal_4657 5017736 .. 5017757 -   -13  -4.84311   CCCCACACAACAAAA           TGCCCGGG TCGAAG CCCGGGCA            TTCATGACTGCGGAT 100 54
   Rpal_4653 5014270 .. 5014286 -  -7.3  -3.29263   ATATCCGCGTCATAA              TTTCGCG CCC CACGAAA              CGATTCGAGAGCACG  58 462
   Rpal_4651 5013610 .. 5013638 - -11.6  -2.75183   AGCCTGATGCAAGCA        TCGCGTGGCCGC CGTGC GCGGCGGCGCGA        GCGCGGTCAATCATC  66 373
   Rpal_4646 5007284 .. 5007299 - -11.8  -3.33696   GCGGCTCCGAACTAA              GCGCGG CGCG CCGCGC               GGAGTGGGTGATCAG  72 37
   Rpal_4640 5001697 .. 5001712 -  -4.6  -3.40403   CCCGTTCGATCAGAA              CCGCAA GCTG TAGCGG               CCTATCGCACGCTAC  53 69
   Rpal_4639 NONE
   Rpal_4638 4999574 .. 4999591 -    -2  -2.65206   ACAAAGGACAACGCA             GCGACTC CAGCC GAGTC-C             ACCAACACCATCACG  38 36
   Rpal_4637 4998410 .. 4998456 -  -9.5  -3.06183   GTCATTGCGAGCGAA GCGAAGCAATCCAGCCCACTCA ATAT CGAGCTG-CTGGATCGCTTCGT CGCTTAGCTCCTCGC  60 63
   Rpal_4635 NONE
   Rpal_4634 4994369 .. 4994392 -  -4.4  -4.08767   GCTACCGCTTCAAAA          GCGTCGGCGA CATG CCGGTGACGC           TGTTCGGCGGCGTCG  62 437
   Rpal_4629 4989249 .. 4989263 - -12.8  -3.27475   CTCGGCATTAGAACA               CCGCCG CGC CGGCGG               ATCGCGCGATTCGCT  74 351
   Rpal_4622 4982262 .. 4982294 -  -6.3  -3.64822   AGGGCCTGATCGAAA     GCGGC-CG-GCAGAA GATCG TACTGCGCGAGCCGC     ATCAGCTCGTGGTGC  59 48
   Rpal_4617 4975967 .. 4975999 -  -5.6  -4.16101   AAAATACCACAGAAA      TTGTGCAATGCAAC ATAAA ATTGCATTGCACTG      CCGCATTACGCGCCA  67 94
   Rpal_4616 4975365 .. 4975385 - -15.4  -4.72272   CCTTCCGACGAAAAA            GCCCGGGC GGATG GCCCGGGC            CCTGAAAACGTTGAA 100 53
   Rpal_4615 4973977 .. 4973988 -  -7.2  -3.14878   TGCCGCAACGCAATA                GCGG TCAC CCGC                 TCAGCAAGCTGCGGG  56 151
   Rpal_4614 4973656 .. 4973670 -  -4.2  -3.28712   GGCCTTGCGCGACAA               GCTTGG AGG CTAAGC               TTCGTTGGCGCCGAC  48 20
   Rpal_4613 4973142 .. 4973158 -  -7.9  -3.14564   CGATTTCGGCACCAA              CGCGGCA AGC TGTCGCG              CAGATCCCGGAACCT  56 56
   Rpal_4612 4972707 .. 4972726 -  -5.7  -2.82193   AGCAGATTGATGACA            GCGG-CTG CTGAT CAGGCCGC            CGTCTTGGTGGATGA  46 17
   Rpal_4611 4971792 .. 4971809 - -14.1  -5.15634   CAGCTCATGAAAAAA             CGCGCGG GTGG CCGCGCG              CTGCAGTGATGTTGG 100 48
   Rpal_4608 4968863 .. 4968897 -  -5.4  -4.21908   CACCAGCACTGAAAA     GATTGCAGCGGCGGCC TCA GGTCGTCGCGGCTTTC     AACTCCAGCGGCACC  65 7
   Rpal_4604 NONE
   Rpal_4603 4962455 .. 4962473 - -11.6  -5.07011   GACACAAAGGAAAAA             GCGGGCGC CGA GGGCCCGC             TTCCGCAAATCAATC 100 59
   Rpal_4602 4961793 .. 4961803 -  -6.8  -3.68351   CGGGGATGAGGCAAA                 GCTG CCG CAGC                 CGTGGGAGATTGCCG  61 250
   Rpal_4599 4959140 .. 4959158 -  -9.6  -4.00468   AGCAGAAGGCAGAAA             GATCTGCG CTA CGCAAATC             CGCGACCCGTCAAAT  76 88
   Rpal_4578 4933537 .. 4933559 - -10.4  -3.01712   GCGCCCGGCGCAACA           CCCGCCCGAG CAG CGCCGGCGGG           CTATTTCGACCAGAC  62 26
        purU 4913256 .. 4913268 -  -3.3  -5.38047   CATCGACACAAAAAA                CGTGG TGG CGACG                CTCGGCCGGTTCCGC  89 213
   Rpal_4559 NONE
   Rpal_4558 NONE
   Rpal_4557 NONE
   Rpal_4556 NONE
   Rpal_4555 NONE
   Rpal_4554 4906268 .. 4906289 - -17.3  -3.84451   GCGTTGAAACGCAAA           TGGCCGGGG TGAG CCCCGGCCA            TCACGCAGATACAAC 100 60
   Rpal_4547 4898254 .. 4898265 -  -2.2  -3.68024   CTCGTGAACATATAA                GACG CGCG CATC                 ACCAACCCCTTGTCC  52 88
   Rpal_4546 NONE
   Rpal_4545 4895208 .. 4895266 - -32.9  -2.78712   GCCGGAATCGAACGA TCGCCACCAGACAACGAAAAGCCCCGGA TCGC TCCGGGGCTTTTCGTTGTCTGGTTG-GA TGGCCGCTGTTCGGC 100 157
   Rpal_4539 4889347 .. 4889361 -    -7  -3.15427   AAGACGGTGGACCAA               CGCGTC GCG GTCGCG               CCGACCATCGACCTC  52 431
   Rpal_4531 NONE
   Rpal_4530 4882790 .. 4882822 -  -6.3  -3.10464   CCACGAACTGCAACA     GGCCCCGCATCGCAG TCCAC CTGCG-CG-GGAGCC     AATTTGCGAATTTCG  51 236
        rpsU 4882369 .. 4882413 -  -7.9  -4.25104   CTGCGCTGAGGAAAA CCCGGCGATGGCCAC--CGACC TGCT GGTCGCCGCGGCCACCGC-GGT CTATTTCGTCGCACT  76 93
   Rpal_4526 4879462 .. 4879493 - -16.7  -4.07568   GGCGCCGCTGCAAAA      CGTCTATGCCCGGC ACAAG GCCGGGCAT-GACG      CGTTGCGAATGGTGG 100 90
   Rpal_4523 NONE
   Rpal_4522 NONE
   Rpal_4521 4871718 .. 4871732 -  -7.1  -2.90212   CTAGCACGCCACATA               GCGAG GGCCG CTCGC               CGGCACCAGAGTGGA  50 92
   Rpal_4520 4870443 .. 4870458 -  -3.3  -3.18264   TTCGGGAGCGAGCAA              CATGA ATACGA TCATG               GATATGACGCGACTC  44 509
   Rpal_4518 4868572 .. 4868589 -  -2.7  -3.54424   GGTCATGCCGCTAAA             GAAAGCC GCAC AACTTTC              CGCATTGTCGATCTC  49 524
   Rpal_4512 4857613 .. 4857623 -  -2.4  -3.62096   TGCGAGCATCGTAAA                 CCGG GCC CGGG                 CATGATCCTCGATCT  48 212
   Rpal_4508 NONE
   Rpal_4507 NONE
   Rpal_4506 4850790 .. 4850802 -  -2.7  -3.04144   GCGCTAGCGGGAATA                TCAAT TGC ACTGA                ATTCCGGCGCCGCTG  42 136
   Rpal_4503 4847571 .. 4847586 -  -4.7  -2.71712   TCGCGCCTTGGAAAT              GGAAG GTGCGG CTTCC               TAGCACGCGGCCACA  44 131
   Rpal_4502 NONE
   Rpal_4501 4845294 .. 4845328 - -16.5  -2.98088   GGGTAAAGGCAGAGA    TTCCGGGTTCGCTCGC TCAC GCGAGCGC-CCCGGAA     TGACGGCGGCCAACG  84 44
   Rpal_4500 4843553 .. 4843563 -  -2.4   -3.9461   CGTGTCGAAGAACAA                 GGCG CAC CGCT                 TCATCAACCCAGTGC  56 94
   Rpal_4498 4841025 .. 4841052 - -16.4  -4.85782   CGGCGCAAAAAGAAA        CAGGTGCATCGG TTGC CCGATACACCTG         TTTGGAAGGTCGCGC 100 75
   Rpal_4497 NONE
   Rpal_4496 NONE
   Rpal_4495 4836934 .. 4836970 -  -4.4  -3.28712   TTTCGTCGCCGACAA   GGTCCAGGTGATCCCCG GCAT CAAGGA-CACCCACACC    ATCATTACCTTCAAG  49 66
   Rpal_4493 NONE
   Rpal_4492 4835036 .. 4835080 -  -8.9  -3.05384   TCTTGTCCTATTCAA GGCCGCCCGCGGGCGGCGACG TTT CGAACCTGCCCTCAGGCCGCC ATCGGCGTGGGAGTC  57 16
   Rpal_4491 NONE
   Rpal_4490 4833132 .. 4833148 -    -5  -3.02461   TAACGCCCCGCAACA              CGCGCC GACAA GGTGCG              ATGATACGTGTATGC  47 42
   Rpal_4489 4832120 .. 4832139 -  -3.5  -4.11484   GCGAAGGCGCCAAAA            TCAGGCG ATCAGG CGGCTGA             ACAGGTCGGCATCGA  61 6
   Rpal_4487 4828815 .. 4828867 -  -9.7  -3.57462   GAGGCCACGTGCAAA GCGGCGTCGCGGCCGCTGCTCAAG ATCAAG CTCG-GAGGCGACGGCGACGACGC ACGGATCGCGGCGGT  64 506
   Rpal_4485 NONE
   Rpal_4484 4826305 .. 4826325 - -10.3  -4.41047   ATTGCGGAAGCAAAA            CGACGCACC GGC GGCGCGACG            ACCGAAATCTTCCCA  95 51
   Rpal_4483 4825105 .. 4825124 -   -10  -2.69151   TCCGGCGAGACAGGA            CACGCGCCG CAC CGGCG-GTG            TGGCGTCCTGACCGT  60 221
   Rpal_4478 4815241 .. 4815255 -  -2.1  -2.77899   TCGTTTTATGAATTA              TGG-GC TGAC GCGCCA               GTCCTATAGCGTCTC  39 70
   Rpal_4477 4814773 .. 4814784 -  -7.2  -5.09895   GAGCGACCCAAAAAA                GCGG GCAG CCGC                 CGTCTGAGCTCGGCA  93 124
   Rpal_4475 4813007 .. 4813035 - -20.4  -3.63744   GCGCCCCCCAAAACA        GAAGAGCGCGCC GACTG GGCGCGCTCTTC        AAGGACCAAATAGCC 100 48
   Rpal_4474 4811308 .. 4811326 -    -3  -3.57144   CCGCCTATGCGGAAA             CGATCGCC CGC AGCGACAG             CCTCGCGCCCGACAC  49 315
   Rpal_4470 NONE
   Rpal_4469 4805687 .. 4805704 -  -5.5  -3.31365   GATGAGACGACAATA             TGGCGGA TCGA TCCGGCA              ATCCAGTGAGCAGAG  52 62
   Rpal_4468 4804926 .. 4804949 - -14.6  -4.56914   CCAGGCAAATGAAAA          GAGCGCCCTC CGTG GAGAGCGCTC           TTTTGCAAGCTCAAA 100 71
   Rpal_4465 4800608 .. 4800645 - -17.7  -4.08216   GCACGCTGTTGAAAA   CACCAAAGGCCGCCCGG AAAT CCGCGCGGCCTTTGGCC    TCATTGTTGCGTCAC 100 58
   Rpal_4463 4798895 .. 4798920 -  -3.3  -3.09933   CGCGAAGCGAGCTAA         CGGAAG-ACCAT GGC ATCGCCCTTCCG         CGGATAGGAGGCCGG  43 497
   Rpal_4460 4796745 .. 4796782 - -13.3  -3.29263   ACATTGTCGCGAGAA   CGCCGACGCTGCCGGAA GCTA TTCCGGCGAGGGCGGCG    GCACCGGACGGCGCG  74 6
   Rpal_4459 4796054 .. 4796078 -  -5.6  -2.53263   TGGATTGTCAACTGA          GGCGGGCG ACTTCCCCA CGCCAGCC          GCGGTGTTTGAGACG  45 78
   Rpal_4458 4794232 .. 4794242 -  -8.2    -3.727   TGCACCAGACCGAAA                 CGGC GGA GCCG                 CATTCTGCCGTGTCG  65 269
   Rpal_4455 NONE
   Rpal_4454 4785769 .. 4785784 -    -4  -3.53091   ATGGCTCGCCTCAAA              TCGCCTG CAT CAGG-GA              CTGATACATCTGGTT  51 5
   Rpal_4453 4784085 .. 4784106 - -10.1  -3.05463   AGCTGCGGCAGCTAA           GCGGCG-CGA AAT CCGTCGCCGC           GGGGCAGCCGGAGCG  62 67
   Rpal_4452 4781118 .. 4781149 - -23.8  -3.96624   CAGCCGGAGCAGAAA      GAAAGGCGGCGGGG TCGC CCCCGCCGCCTTCC       GTCGTTTGATCAGCT 100 50
   Rpal_4451 4780035 .. 4780063 -  -2.9  -3.61764   TTAGCAATGTGTAAA        TCATGACCGGCCG CGG CGTCCGGCGCCGA        TCGCCTCGGAATACT  51 60
   Rpal_4450 4779186 .. 4779201 -  -5.4  -3.35996   CATTCCCACTGATAA              GC-CCGT CCC ACGGCGC              GCCGCATCGCGGCGC  50 131
   Rpal_4449 4778221 .. 4778237 -  -2.2  -2.71731   CGGACGCGGGAACGA              TACCGG TCACG CCTGTA              GGCTCCGCTGCATCC  39 15
   Rpal_4448 NONE
   Rpal_4447 NONE
   Rpal_4446 NONE
   Rpal_4445 4774389 .. 4774436 - -27.2  -3.06183   GTCACTGCGAGCGAA GCGAAGCAATCCAGGGGCTCCG TGCA CTGAGCCCCTGGATTGCTTCGT CGGCTTCGCCTCCTC 100 77
   Rpal_4444 NONE
   Rpal_4443 NONE
   Rpal_4442 NONE
   Rpal_4441 NONE
   Rpal_4440 4767777 .. 4767807 -  -6.1  -3.86524   ACACTGCTGGAGAAA      TTCGGCGCGCGCGGC ATC GCCG-ACG-GCCGCA      TTACCTTGCTGGGCT  62 464
   Rpal_4438 4762906 .. 4762918 -  -5.5  -3.14132   GGCCGCCGCGATTAA                CGCAG CAG CTGCA                GGACGCTCTGCTGAG  51 9
        flbT NONE
        flaF 4761834 .. 4761850 -  -7.9  -2.72344   GCCGAGTCGGAATGA              GACCGGA TCT CCCGGCC              CGTCGGTTGCGGGCG  52 109
        fliX 4758534 .. 4758564 -  -3.8  -3.37198   TTGTGACAGACAATA       TCGTCCGCGCCGAT CGC ACCGGAACGGCGGA       ATAGCTGGGGAACAC  48 52
   Rpal_4430 4757985 .. 4758020 - -17.6   -4.7497   GCCAGCTACCAAAAA    CAACGGCGCCGCTTCC TCTC GGAAGCGACGCCGTAA     AACTTCGATCAGGCC 100 47
   Rpal_4427 NONE
   Rpal_4426 4752342 .. 4752374 - -19.2  -4.28548   AGCGACTTACCAAAA      CGTGGATGCCCGGG ACGAG CCCGGGCATCCAGG      AGCTCACAGCACCTA 100 38
        fliL NONE
        fliM 4746765 .. 4746781 -  -3.5  -3.06991   CACGATTGCGAAAAT              GTGGCTC ATT GTGCCTC              CATCATTTTGCTCTG  43 14
   Rpal_4419 NONE
   Rpal_4418 4745497 .. 4745527 -  -5.2  -4.13995   TTTCGACAAACCAAA       TCGGCTGGTGGCTG GCG CAGCATCCAGCGGT       CCAGGCAAATTTTGC  65 82
   Rpal_4417 NONE
   Rpal_4416 4742912 .. 4742935 -  -8.1  -3.66356   AGGTCGAATTCGAAA          CACCG-CGGC GCAAA GCCGTCGGCG          TGATTTTCGCATCCG  63 324
   Rpal_4414 4738600 .. 4738653 -  -5.2  -3.21593   CAGCTGCGCACAACA CCCTCCA-GATTCCGGGTTCGCTCGC TTTC GCGAGCGC-CCGGGAATGACAGTGGG GACGGCGAAGGAAGC  48 42
        flgB NONE
        flgC NONE
        fliE 4734979 .. 4735023 -  -7.9  -2.55544   CGAGGAGCGAAGCGA CGAAGCAATCCAG-GATCTC AACGCA GAGGGCGCTGGCTTGCTTCG CTTCGCTCGCAATGA  51 69
        fliQ 4734569 .. 4734613 -  -4.9  -3.28924   GAGCGCGCGTCAGAA GGTCG--TGCGCCCCGGCCGC GCGAT GCGGCGACGGCGGATGCGACC AACGAAGCGGCGCGG  50 55
        fliR 4733760 .. 4733774 -  -4.9  -2.71731   TTCAGCTCCGAACGA               CGCCG GGCGT CAGCG               TGGCATCAGATCGTG  44 20
        flhB 4732555 .. 4732571 -  -2.9  -3.53343   AATCGCGGCCGGAAA              CGCAAGA CCA TCCTCCG              GCCCGTTCGCAGGCC  49 123
   Rpal_4405 4729883 .. 4729902 -  -6.4   -4.1648   AGAAGAACGAAAGAA            GCGAGC TGGCAGTG GCTCGC             GTCCTGCAGCCCCCT  69 40
   Rpal_4404 4728513 .. 4728535 - -20.6  -5.46657   GAGCCTAACAAAAAA           GCGCCGCGGA AGG TCCGCGGCGC           TTCGATGCTGGATCG 100 55
   Rpal_4403 4727621 .. 4727676 -   -17  -3.53012   GGGGCGCGCGTGAAA CGCGCGAACCCGGAATCTCGAAGTG GTGTGCT CGGATC-AGATTCCGGGTTCGCGCG TTTCACGCGCGCCCC  93 83
   Rpal_4399 4725831 .. 4725846 -  -2.4  -4.17762   GATCGTCGAAAACAA              GCCTCA TGGC CGGGGC               TGCGAGCCCAATCGA  59 13
   Rpal_4398 NONE
   Rpal_4397 4723327 .. 4723337 -  -5.4  -3.72363   GACGGAAACTGGAAA                 CTCA CCA TGAG                 CACGCCGATGGGCGA  57 479
   Rpal_4395 4721980 .. 4721992 -  -9.1  -3.14132   CTTCGTGCTGATCAA                GCCGA GCG TCGGC                CACATCGCGGTCGGG  59 366
   Rpal_4392 4719984 .. 4720027 -  -9.7  -3.06183   GTCATTGCGAGCGAA GCGAAGCAATCCAGAGC TCACCGAACC GGTCTGGATTGCTTCGT CGGCTTCGCCTCCTC  60 72
   Rpal_4390 4718565 .. 4718578 -  -5.2  -3.05463   ATGGGGCGCAGGCAA               CGCC GGACAA GGCG                GATCAGAGCCGCGCG  47 28
   Rpal_4389 4717416 .. 4717436 -    -9  -3.06796   CGGCAGCTCACTGAA           GCGGC-AGC CGGA GCTTGCCGC            GCGGCTGCGCAGCGC  57 432
   Rpal_4387 4714806 .. 4714823 -  -4.1  -3.54543   ACCCATTTTCTCAAA             GCC-GTCG CCT CGACCGAC             GTGATCGCCGACGCC  51 203
   Rpal_4385 NONE
   Rpal_4384 4713856 .. 4713872 -  -2.2  -2.74792   GCATCATCCTCAAAT              CGCAGA AAAAA TCTGTG              CCGTTTTGACCACCT  39 74
   Rpal_4383 4712607 .. 4712647 - -17.5  -2.86264   AAGGATTGAGCAAAC  CAGCACAGGCCGCCGGCGT CCG ACGTCGGCGGCTTTTGCCG  TTCAGGATCAGCGGC  87 473
   Rpal_4379 4710951 .. 4710975 -  -5.5  -3.31515   AAAGATGCCGGACAA          GGTGCGGGTGC TGT GCAGCCGCTGC          CGGGTGCCGTTCCGG  51 238
   Rpal_4377 4708504 .. 4708519 -  -8.2  -2.57344   CACCCCTGTCAGAAC              GCGACC TTGA GGCCGC               CGCTGACGCCGGCGT  53 3
        recA 4706734 .. 4706764 - -14.6  -3.36515   GTCGACGCTTAAAGA       CTGCGGCAGCCTGC GCG GCGGACTGCCGCCG       GCAGCATCTCTGCAA  82 408
        alaS NONE
   Rpal_4371 4697739 .. 4697775 -  -8.6  -3.18681   TCGCAATTGGACGAA   GC-CGCGGCGCTGATGC TGGC GCATTTGTGCCGCGTGC    ACGGCATCGGCGCCC  56 469
   Rpal_4368 4692186 .. 4692204 -  -8.1  -2.62184   TGGTTGTGGATAGGA            CGGCGGCG CAAG CGC-GCCG             GCTGAGGCGCCTTGC  53 60
   Rpal_4361 4683735 .. 4683762 -  -4.2  -3.19449   CAAATACGTTACCAA       TGCGTCGCCGGT TCGGAG ACCGG-G-CGCA        TCGTCCGCGGCATAC  47 77
   Rpal_4360 4682621 .. 4682639 -  -5.8  -3.17075   TGTGGCGCAAGTCAA             TCCGGGCG GAT CGCCCCGC             TAGCCGCGCGCGAGG  51 3
   Rpal_4359 NONE
   Rpal_4358 NONE
   Rpal_4357 NONE
   Rpal_4356 4680317 .. 4680327 -  -2.4  -3.66378   CAGATTTCACTCAAA                 TGGC TCC GCCG                 GACTCAATCTCGACT  49 140
   Rpal_4355 4679479 .. 4679496 -  -2.6  -3.64703   TTTGGCGGATTGAAA             GCTCAC TGAGTG GAGAGC              GACGCGTCACCTGCC  49 149
   Rpal_4353 4677936 .. 4677953 -  -5.5  -4.17556   CACAGCCGGAACAAA             GCGGTGA CGAA TCACAGC              GAATCGAGCTGGGCG  67 175
   Rpal_4352 4676867 .. 4676880 -  -6.7  -3.27475   GGTCGCATGACAATA               TCCCA ATTA TGGGA                TGCAAACAACGATAG  55 113
   Rpal_4351 NONE
   Rpal_4350 4675629 .. 4675648 -  -9.2  -2.75992   CCGCACCGAAGAGGA            CTGGCTCG ACCG CGAGCCCG             CGATCCGCAAAGCCC  55 522
   Rpal_4347 4673052 .. 4673100 -   -14  -2.52464   CGCTCGCGCAAGCGA GCGAACCCGGAATCTCGATCGTT CTAT AACT-TCTGGATTCCGGGTTCGC CGCTGCGCGGCGCCC  71 81
   Rpal_4346 4672680 .. 4672711 -  -2.3  -4.12188   TCAGCACCTCGAAAA      TCAACTCATTGCT CACTTC AGCCATGACCTGA       TCCTCTGAACGTCGG  59 42
   Rpal_4345 NONE
   Rpal_4344 4671591 .. 4671609 - -13.1  -5.06414   GTCGCTCAACAAAAA             GCCCCCG GTTCG CGGGGGC             TTTTTTCATGGCTGC 100 123
   Rpal_4341 4667651 .. 4667678 - -11.4  -3.42013   AGCTTACAAGACCAA        CATCGCCGGCATC CGC AATGCC-GCGATG        CAGGCGCGGGGGGAA  71 46
   Rpal_4339 4665916 .. 4665936 - -11.1   -3.2794   GTCGAGGGAGATGAA            TTGCCGGGC CGA GCCGGGCAA            TTCATCATCGGGACC  69 53
   Rpal_4337 4663833 .. 4663844 -  -7.2  -3.07816   CGCGCATCCATCCAA                GCGC GAAC GCGC                 TTGCATCAAGCAATT  54 119
   Rpal_4336 4662386 .. 4662398 -  -3.3  -3.13728   AGGATGTAGACCCAA                TAGGC CAT GCCGA                CTCTCCACCGAGAGC  44 91
   Rpal_4335 4661937 .. 4661966 - -15.8  -3.64487   TCACACCGGCAACAA       CGGCATGCGCGGG CTCGC CCCGCGCAT-CCG       CTCACGGACAAAGAA  86 165
   Rpal_4329 4656014 .. 4656049 - -14.6  -4.22652   CGACACCATCGAAAA    TGCCGAAAGCCCCGCC GTGG GGCGGGGCTCCCTGCT     GTCGCTTCGCGACGC 100 79
   Rpal_4328 4655222 .. 4655246 - -13.5  -2.87132   GCGGCGGCTGAGATA          GGTAGCGCCCG GGC CGGGCGCCAGC          GTCAAGCCATCACGA  74 55
   Rpal_4327 NONE
   Rpal_4326 NONE
   Rpal_4325 NONE
   Rpal_4324 4651875 .. 4651927 - -11.4  -2.71712   CGGGGCGCGCCAAAG GCGCGAACCCGGAATCT-CGACG TCAGTGCC CGTTTCAGATTCCGGGTTCGCGA GCTTCCGCTCGCGCC  63 252
   Rpal_4323 NONE
   Rpal_4322 NONE
   Rpal_4321 NONE
   Rpal_4320 4647849 .. 4647874 -  -8.9  -3.92542   CTGATCTGGAAACAA         CCTGCCGGCGC CAAG GCGGCGGCAAA          GCTCGCGACGCGGCT  70 68
   Rpal_4318 4646213 .. 4646235 -  -4.6  -3.14132   GGTGGGTTTGACCAA           GGCGCGCGCC TCA GCCGCGCGGA           CTTCGCCGCGTCAGA  48 13
   Rpal_4317 NONE
   Rpal_4316 4644888 .. 4644901 -  -9.5  -2.57132   TCTGGTCCGTAGAAT               CGGCG ATAT CGCCG                CTCCCGTTATTGGGC  56 382
   Rpal_4314 4643671 .. 4643688 -  -8.5  -2.62983   TTCATTTTCACATTA             TGACTGA CCGG TCAGTCA              TAATCAAGATCTGCG  53 68
   Rpal_4313 NONE
   Rpal_4312 NONE
   Rpal_4311 NONE
   Rpal_4310 4640013 .. 4640026 -  -2.3  -4.07568   GCCCCCTGTGGAAAA               GCTCG GAGC CGATC                AGTCGAGCGTGCGGC  57 24
   Rpal_4309 4638751 .. 4638784 -  -5.1  -3.61715   GATTTCCGCGAACAA     CGTTG-GCGCGGCACC CAT GGCGGCGTGCGCATCG     CAGTGGAGAGTTGGG  54 338
   Rpal_4305 4635447 .. 4635474 -  -5.4  -3.18738   GACCACGACCAAAAT        CGTGGCGACGGCG GGA CGCCG-CATCGCG        TCGCTCATCGGCCGG  48 41
   Rpal_4304 4633889 .. 4633903 -  -8.5  -3.40597   CGTGTGAGGGAAACA               GCGCG GCAGA CGCGC               GGGAGGTAGGGATCG  63 108
   Rpal_4303 4632349 .. 4632375 -  -9.3   -2.5655   GTGATCGACACCAAC         GGCGCCGGCGA CGTGT TCCACGGCGCC         TATGTGTTCTCGTAC  54 294
   Rpal_4301 4630222 .. 4630232 -  -8.2  -3.18264   GTGCTGAGCGATCAA                 CCGC AGG GCGG                 CTTCATCACCCGCAA  56 233
   Rpal_4298 NONE
   Rpal_4297 4625318 .. 4625357 - -12.6  -3.07816   GCCGGACCTATTCAA  TGGCGAGCGGGCCGCGCC GAAG GGCGCAGCCGGCGCTCCG   GCTATTAGTAACGCG  71 30
   Rpal_4296 4622065 .. 4622086 - -17.3  -4.86862   CGCAAAAAATGAAAA           TGGCGGGCC GATC GGCCCGCCA            TTGGTTGGTCGGAAT 100 55
   Rpal_4295 4620528 .. 4620554 -  -7.9  -2.79098   TTGACGCATCAAGCA         GTATCGCCGCG ACTGG CGCTGCGATGC         AAGCGATCCGACACG  52 54
   Rpal_4294 NONE
   Rpal_4293 NONE
   Rpal_4292 4619022 .. 4619058 - -11.7  -3.59023   CGGACACAATCATAA    CGTGCTGAATGTCAG CTATACC CCGACATTCAGAACG    TCACGCCGATCCCTT  75 26
   Rpal_4291 4618266 .. 4618283 - -14.1  -5.20328   CCCCAAAAAAAGAAA             GGCCCGC GCGA GCGGGCC              GAGGTCGGGAGGAAC 100 86
        paaA 4616308 .. 4616332 -    -2  -2.94365   GGATAGGTTAGAAAT         TCCGCGGTCGT TGTT ACG-CCGCCGC          CAGTTTCTTCTTGCG  40 14
        paaB 4615867 .. 4615885 - -14.6  -2.94099   GCCGCTCACTACATA             TGCCCGAC TTC GTCGGGCA             CTTCGTAGAACGTCG  77 0
   Rpal_4287 NONE
   Rpal_4286 NONE
   Rpal_4285 4613088 .. 4613119 -  -8.6  -4.56597   CCCGCGCTGGAAAAA      GCGCTC-GCCGCCGG CGG CCCGCAGCTGATCGC      GATCGACGTCCCGCG  81 280
   Rpal_4278 NONE
   Rpal_4277 4604546 .. 4604559 -  -9.5  -2.83641   TAAGTTACTAGTACA               CGGCG TCAT CGCCG                GGCTTGACCTACCTG  58 151
   Rpal_4276 4603452 .. 4603466 -  -2.7  -3.42574   TGAATTTGAGCAGAA               CACCG GAGCT CGGGG               CGATCAAGCGCTAAC  47 284
   Rpal_4275 NONE
   Rpal_4274 NONE
   Rpal_4273 4596480 .. 4596494 -  -2.1  -4.18197   ATGGCTCATGGAAAA               TCTCC TCTTC GGAAA               ATTCGAGAAGCTCGG  59 207
   Rpal_4272 NONE
   Rpal_4271 4594252 .. 4594279 -  -5.4  -3.74693   CCGGAGGGTAGCAAA        GGCGTGCGCGTC AGGC GACCCGCACGGT         TGCGAGAAATTTAGC  58 8
   Rpal_4270 4592725 .. 4592746 -  -2.1  -4.57569   CCACGGCTGCAAAAA           TCCCGCCCG ATCG CGACCGTGA            TGCGCGATCTAATCA  68 97
   Rpal_4269 NONE
   Rpal_4268 4590077 .. 4590091 -   -10  -3.14211   ACTTCCCGGCACGAA               TGCGAC AGC GTCGCA               TCGCCCGGCATTCTG  64 166
   Rpal_4267 4587586 .. 4587623 - -21.5  -2.64099   TGCTCGCATCACAAT   CAAAAGCCCTCCGGATC GGCC GATCCGGAGGGCTTTTT    GTTTTCACAAGCGGA 100 57
   Rpal_4265 4586261 .. 4586300 - -24.4  -5.58454   TGGAGACGAAAAAAA  GCGAACGGCCGCACCCGGC CGG GCCGGGCGCA-CCGTTCGC  GACGCCATATAAGGG 100 152
   Rpal_4264 NONE
   Rpal_4263 4584511 .. 4584522 -  -2.2  -2.62184   CTGTTTTCGACATCA                CACG ATCG CGTA                 TTGCAGCAGGATGGC  38 11
   Rpal_4262 NONE
   Rpal_4261 NONE
   Rpal_4260 4580479 .. 4580515 - -14.4  -2.88768   GATGACAACGGAAAT   CACGTC-CGCGCCGCCC TCAC AGGCGGCGCGTGATGCG    CTCAGATCTCGGCGA  77 27
   Rpal_4258 NONE
   Rpal_4257 4577051 .. 4577070 - -16.4  -4.16943   TTCCACATTTCAAAA            GCGCGGCC CGCG GGCCGCGC             TTTTTTGTTGAGTAC 100 51
   Rpal_4254 4571895 .. 4571907 -  -6.2  -4.56597   CCGGTGCGGGAAAAA                CGCC TCCCC GGCG                AAGTCCCGCCCGGGG  76 75
   Rpal_4253 4570164 .. 4570192 -  -5.8  -3.83026   GCGTCGCACAGGAAA        CGCCGGCACGGC TACTT ACCGCGCTGGAG        GACTTTGCAGCCGCC  62 68
   Rpal_4250 4566208 .. 4566239 - -10.9   -3.7398   TTGCAAGGGAAAAGA      CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG      AGGGTCTCGCACGGG  76 178
   Rpal_4247 4562050 .. 4562084 - -21.4  -3.97709   AGCACTCAACAACAA     GCAGAAGCCCCGGGCG TCA CGCCCGGGGCTTCGTC     GTTTCGATCCGCCGA 100 80
   Rpal_4238 NONE
   Rpal_4237 NONE
   Rpal_4236 4547764 .. 4547776 -  -7.7  -2.64155   CCTTGCTGAAATTCA                GATCC ATC GGATC                CTCCTTGGGTCATTC  51 233
   Rpal_4235 NONE
   Rpal_4234 NONE
   Rpal_4233 4543998 .. 4544031 - -16.1  -3.15147   TCCAAGCAAGAGAGA     TTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAA     TGACGACGGAGAGGT  86 221
   Rpal_4226 4535612 .. 4535670 - -10.3  -3.09878   GTGATGGACCGAAGA CCTTGTTCCGCGCATCATCTTAGCCGAG AGCG CACGGCTGCGATGATACGCGGAGGAA-G ACTTCGATTTGCACC  62 138
   Rpal_4222 4527316 .. 4527331 -    -6  -3.01712   GCCCGCCGCGCAAGA              CGCGGC GATC GCCTCG               ATGTCGGCGGCCCTC  49 521
   Rpal_4218 4523541 .. 4523569 - -13.3  -3.14132   GGCGTTTGTGACGAA        GATCATCGACC GATCACA GGTCGATGATC        TTCATTCGCTCAAGA  73 10
   Rpal_4215 4521062 .. 4521082 - -18.3  -5.07652   TTTCGCAAAACAAAA            CGGCCGGGA AAA TCCCGGCCG            TTCAACGTCCCAGTC 100 52
   Rpal_4214 NONE
   Rpal_4213 4517111 .. 4517138 -    -4  -2.87132   GCGGCGGGCGATATA        GGCGGCCATG CTATTTCC CTTGGCCGGC         AGGTGCCGCAGGGGC  44 8
   Rpal_4212 NONE
   Rpal_4211 NONE
   Rpal_4210 NONE
   Rpal_4209 4512062 .. 4512100 - -12.3  -3.72576   GGTCCCTCGATCAAA  CTGCCGCCGGCCGAGACG CTGC CG-CTCGGCGCGCGGCTG   GCGATCGTGCGCGAG  77 468
   Rpal_4206 4509292 .. 4509309 -  -9.8  -3.79906   CGAGGCCGAGAAGAA             GGCGGC GGCGCT GCCGCC              CAAGCTCACCGTGCC  74 143
   Rpal_4196 NONE
   Rpal_4195 4498611 .. 4498637 - -11.4  -3.17075   CGGTTCTGAACCGAA         TGGGGCCGCGCC AAC AGCGCGGCCTCT         TTCATTTTGGGCATG  67 89
   Rpal_4191 4494490 .. 4494516 - -17.3  -3.68351   GTCGGAGGATGGAAA        GGGCGGCG-CGC ACCG GCGTCGCCGCCC         TCTCGCTTGTCGGAC 100 65
   Rpal_4190 4492684 .. 4492714 -  -8.1  -2.82516   TCCCCGAGCACGACA       CGCTCCCCTCCCC CTTGC GGGGAGGGGTTGG       GGGTGGGGGCGCCCC  54 144
   Rpal_4189 NONE
   Rpal_4188 4490554 .. 4490572 -  -3.8  -3.72576   CTCTTGTTCAGCAAA             CGCCGAAA TAT TTTCCACG             GCCGTCATCCCACCC  56 177
   Rpal_4187 4489821 .. 4489833 -  -3.3  -3.68529   AGCTGATGAGTCAAA                GCCGC CCT ACAGC                GCCATCTGCCGGCTG  54 19
   Rpal_4186 4488685 .. 4488699 -  -5.6  -2.75382   CACTCGATCGAATGA               GCCTGA AAT TCGGGC               GTGACGCGGGATCAA  46 37
        ureA 4488255 .. 4488265 -  -8.2  -3.14132   GCCTGCGCGGACGAA                 GCCG CTT CGGC                 GCGGCGAAGGCCCGG  58 122
        ureB NONE
   Rpal_4183 4487365 .. 4487379 -  -4.9  -3.28712   TCCTGGTGCTCACAA               CACGG CCCTC CCGCG               CGCGGCGGTTTCGTC  50 5
        ureC 4485533 .. 4485561 -  -5.1  -3.64703   CGGCGGGGATGCAAA        GGGGCGGCTCAAC CGC GTCGACGCGCCAC        GCGACGGTCATTCCG  55 114
   Rpal_4181 NONE
   Rpal_4180 NONE
   Rpal_4179 4483657 .. 4483667 -  -2.4  -4.35091   AAGATCGACAAGAAA                 GTGC TGC GCGC                 CGGCTTCTGGGCCGG  65 128
   Rpal_4177 4481031 .. 4481077 -  -4.2  -2.71731   TTTATCGCCGAAGCA TGCCACGCCGCCGCA-CGGTC GTCGAT GGCCGGTGCGGCTACGCCGCG CTGCGGAATTCGGCC  42 16
   Rpal_4176 4479868 .. 4479899 -   -13  -3.18582   GAGCGTAGCGACGAA      GCAATCCAGCACCG AGCA CTGGGCTGGATTGC       TTCGCTTCACTCGCA  73 63
   Rpal_4174 NONE
   Rpal_4173 4478209 .. 4478255 - -10.1  -3.53012   CGGGTTTGCCCCAAA CCGTCATTCCGGG-GCGCAAGC GCAA GCTCGCGAACCCGGAATCTCGA AGTTGTTTCCGGCAG  68 136
        ligD 4473962 .. 4473972 -  -3.2  -4.42386   TCGGCAGCGACAAAA                 CAAC AGA GCTG                 TGCACACGCTGAGGT  67 432
   Rpal_4169 4473415 .. 4473454 -  -9.3  -3.89346   CGCGCACCCCACAAA  CACCGAGGCCGCCCGG GAGCTGGAG CCGGACGGCCT-GACG  GGGTTTGTGCCGAGC  74 162
   Rpal_4162 NONE
   Rpal_4161 4454873 .. 4454894 - -10.1  -2.71144   TACCGGCCGCAACGA           CGACGACGGC TTC GCCGCCG-CG           ATCGACTTCATCCTC  57 64
   Rpal_4152 4444846 .. 4444875 -  -7.1  -3.01791   ACGTCGCTGCGAAGA       TCGCCGGCTGAGGC AGC GCGTCAGCTG-CGA       AACGCCGGCACACCC  51 16
   Rpal_4150 NONE
   Rpal_4149 NONE
   Rpal_4148 NONE
   Rpal_4147 4441229 .. 4441241 - -10.5  -3.55548   GAACAGGCCGGCAAA                GCGCC TCT GGCGC                CGCCGGCAGGCGAAG  70 42
   Rpal_4145 4439539 .. 4439558 -  -4.2  -3.33696   CGGCTTGCCAAGCAA            GCGCGATA ATTC CATCGAGC             GGCAGATGATCAAGG  48 57
   Rpal_4144 4438403 .. 4438431 - -10.2  -2.59447   CTGGAACCATAATAC        GTCATGGCCGGG CTTGT CCCGGCCATCTC        CAAGCATGCGCATAT  59 103
   Rpal_4143 4437748 .. 4437762 -    -7   -3.3039   TAAAAATCAAGGGAA               CCTGCG CCC CGCCGG               ATCAGCGGCCGGGCT  55 27
   Rpal_4142 4437264 .. 4437309 -  -6.2  -3.45366   TCTGGAACGAAGTAA CTCGCCCCA-G-GCAGGG CCTGCTCCTTCT CCCCGCGCGCGGGGCGAG GTTAGGAAGCTCTCG  55 55
   Rpal_4135 4429065 .. 4429109 -  -8.7  -2.73364   GGGGCACGCGAAGCA CGAACCCGGAATCTCTTTGCG TGGGT CG-ATCG-GATTCCGGGTTCG CGAGCTATCGCTCGC  54 66
   Rpal_4134 4428576 .. 4428588 -  -7.7  -3.40403   CGCGTGCGACGACAA                GAACG AAG CGTTC                ACTTTTTCTTCGGCA  60 24
   Rpal_4133 4427214 .. 4427267 - -12.3  -3.64703   CTGCGCCCACGCAAA CCGCCGCAACCGAAAC-GGCGGCGCC TGC GACACCGGCTGCTCCGGTAGCGACCG CCCCTTCTGCCGAGG  77 367
   Rpal_4131 4424867 .. 4424903 - -21.7  -3.08046   TTGTCATCTGAAAAG    CAAAACGCCCGCAGGTG AGC CACCGGCGGGCGTTTTA    AAGCTGAGATTGGCC 100 45
   Rpal_4129 4422465 .. 4422485 -  -5.4  -3.86202   CTGGAGCAGATCAAA           GTCGCCGCC AACA AGCG-CGAC            GTGCCGTATCAGTCG  60 293
   Rpal_4126 4421076 .. 4421098 -  -5.5  -2.79183   CGGAGTGGCAGCATA           GCACCACGC CCCTT GCATGGTTC           CGCCGTGACGCGGTC  46 50
   Rpal_4125 NONE
   Rpal_4124 4418717 .. 4418732 - -11.8  -3.01712   CCGGTTCGTTCAACA              GCGCCG GGCG CGGCGC               GATCTCAGGAGAGCC  68 407
   Rpal_4121 4417502 .. 4417514 -  -4.9  -2.57132   TGGCCGCTTTAGAAT                TAGAA TAA TTCTA                GATCATAACGCGGGT  43 85
   Rpal_4120 4416897 .. 4416926 -  -9.9  -3.61398   TCGCCGGCGCAAGAA       CCGCGCCGGAC GACGTGAG GACCAGCGCGG        CCGTCGGCCGAACCG  70 68
   Rpal_4117 NONE
   Rpal_4116 4410887 .. 4410929 - -10.4  -3.51924   GGCCGAGCGACATAA TCGAGATCCGGCGCTACGCG CCG CGCGTCGCGGCCGAAGTCGA TCTCGAACGCCGCGG  67 509
   Rpal_4114 4410287 .. 4410339 -  -7.8  -4.40123   CAAGAAAAAGAAGAA GCGCA-AGCACAAGGACTGATCGCGC TCC GCGCGATTAGTC-TTGTTCAATGAGC CCGCGCGATCAGCCG  81 34
   Rpal_4110 4406764 .. 4406785 - -12.9  -2.87468   GGCGACCAGACCACA           GGCCGCTGC GATT GCTGCGGCC            GGATCAGCCGCCGTG  69 476
   Rpal_4108 4404925 .. 4404948 -   -11  -3.03771   TGATACTTCCGAACA          TGCGCGGCGGC TGC GCCACCGC-CA          GCGGCAAGGTGCACA  62 177
   Rpal_4105 4402487 .. 4402517 - -11.1  -3.08813   TCCGACTTCAAGACA      GTGGC-GGCAGCCT AGCA AGGCCGCCCGCCGC       GGCATTGATCTGAGG  66 282
   Rpal_4104 4401717 .. 4401746 -  -6.4  -3.33696   GCCTGTCGCAACGAA      GACGCTGCCGAGCG GGTC CGC-CGGCTG-GTC       GCGACGCGGAGACGG  55 231
   Rpal_4102 NONE
   Rpal_4101 4399900 .. 4399916 -  -2.2  -3.50853   CTCCCTCAATGAGAA              CGCC TCCTCGCCC GGCG              GGTTACACCTTCGGC  47 66
   Rpal_4100 4399434 .. 4399458 -  -3.6  -4.14243   CATCCTATTTGAAAA         CGACCGATGACG CTT CG-C-TCAGTCG         CGCGACGCCATCCTT  61 170
   Rpal_4099 4398764 .. 4398780 -  -2.2  -4.96848   GCCGTCATAGAAAAA              GCGG AACGACTGG CCGC              ATTGCGAGGCCCCGC  76 260
   Rpal_4091 4389077 .. 4389098 -  -3.6  -4.08692   CAACCTGGTCGAAAA           CGCGGTGC GGTTCG GCACCGAA            GTGACGATCCGGCTG  61 326
   Rpal_4088 4386533 .. 4386571 - -16.9  -5.06414   GGTCCGGAATAAAAA  GAGCGCATCCCCTTGCAC CGCA GCG-AAGGGAATGCGCTC   GAACCGACGGCGTCA 100 71
   Rpal_4087 4385740 .. 4385763 -   -21  -3.95073   CTCGACACGCACAAA          CGCCGCCGGG GAAG CCCGGCGGCG           TTCGCGTCTTCAGAA 100 52
        tnaA 4380957 .. 4380979 - -20.6  -3.84719   AGCCCCAAACGCAAA           GCGCCCGGCT GAC AGCCGGGCGC           TTGAGAGGATCGCGC 100 56
   Rpal_4082 4380272 .. 4380282 -  -8.2  -3.53444   CCACCTGCGGCCAAA                 GCCG CTT CGGC                 GCTGCGAAGGCGCGA  63 104
   Rpal_4081 4379667 .. 4379679 -  -6.9  -3.14132   CGTCCGTGCCACCAA                GCCCG GCG CGGAC                GGCGAGGCGCCAGCG  52 274
   Rpal_4077 NONE
   Rpal_4076 NONE
   Rpal_4075 NONE
   Rpal_4074 NONE
   Rpal_4073 4374787 .. 4374801 -  -2.8  -2.87132   CGGGGTTGTGATAGA               TGACGA CGT CCATCA               CGCGACCTCGGGCCG  42 23
   Rpal_4072 4374357 .. 4374381 -  -4.1  -2.70932   CGCTCCTCGCAATGA          CGGCTTCGCGT TTC ACGTCACGCCG          TCGCGACCCTGCGCC  42 18
   Rpal_4071 4373187 .. 4373201 -  -7.1  -2.71364   GGAGCCGCTTAACCA               GGGCT CGCTC AGCCC               GGCGTCCGCGCCACC  49 19
   Rpal_4066 4365057 .. 4365071 -  -2.1  -3.99494   GCAAGGGAACAAGAA              GC-GGT TAAT ACCTGC               CTACCTCGTAAAATT  57 402
   Rpal_4064 4362972 .. 4363005 - -16.8  -3.50853   TTTTCTTAACCATAA     GAGGCGC-GCGGAAC GTCGT GTCCCGCAGCGCCTC     ACTGTCGCCGTCGTC  89 47
   Rpal_4063 4361476 .. 4361492 -  -5.7  -3.39505   ATTGCAGATCGACAA              CTGCGAC CTC GCCGCCG              CGCAGTTCATGCAGG  53 195
   Rpal_4061 4359446 .. 4359456 -  -3.2  -3.28745   CCGTCAATAATCGAA                 CAGA ATT TCCG                 TCATTGCGAGCGAAG  46 120
   Rpal_4060 4357779 .. 4357789 -  -2.4   -3.9712   TGAGCTTATCACAAA                 GCGC CTA GAGC                 GTCACGGGCCGGAGC  57 44
   Rpal_4059 NONE
   Rpal_4058 4356679 .. 4356697 -  -8.8  -4.15106   CAGTAAGGGTGAAAA             GGTGCGGT AAG AGCGCACC             GCGTCGCCGGCAACG  76 316
        mraW NONE
   Rpal_4055 NONE
   Rpal_4054 4351887 .. 4351935 -    -5  -4.07568   GCGCGCGGCGCAAAA CGGCAGGGATGGCGCCGTTGCGG CAGG CCGCA-CGGCTACTGGCCTGCCC TCGATGACGCAAGAA  63 12
        murE NONE
   Rpal_4052 NONE
        mraY 4347756 .. 4347779 -  -3.1  -3.65046   GTCTCATTCCAATAA          GGACGGGG GTTATGGGT CCCCG-CC          TTTGCGGGGACGACT  51 66
        murD 4346200 .. 4346232 -  -6.8  -2.87132   CCTCTCCTGCACAGA     GCCGGAAGAGGCCCG TCAG CGGGTCACA-CCGGC      GTCACGCCGTCGAGC  50 16
   Rpal_4049 NONE
        murG NONE
        murC 4342222 .. 4342253 - -10.9  -3.36515   GTTTACGGCCAAAGA      CGTGGATGGCCGGG ACAAG CCCGGCCATG-ACG      GGACGAAGATCAATG  69 62
        murB 4341019 .. 4341039 - -10.4  -3.31144   GGTGCATCTCGACAA           GCCGCGCGC GATG GCG-GCGGC            ACTCACTGTATTCGC  63 261
   Rpal_4044 4338770 .. 4338795 -  -5.3  -4.68103   TGAAGTCGAAGAAAA         GCTGCTGCGTCC CGC GGACCCGGC-GC         GCGGCGTCATTTTGC  78 68
   Rpal_4043 4337547 .. 4337557 -  -4.6  -3.25356   ACCGAAACGGATGAA                 GAGC TCC GCCC                 GGCTTACGCCACGAC  50 207
   Rpal_4042 4336426 .. 4336439 -  -3.8  -3.09516   CTGGGTACGATCGAA               GACG GTCACG CGTC                ACCAGCCTTCTTTTT  45 17
   Rpal_4041 NONE
   Rpal_4040 4333190 .. 4333214 - -20.7  -5.24129   GCTTGCCACAAAAAA          GGGCCCCGGCG GAT CGCCGAGGCCC          TGAGCATCGTCAGAT 100 54
        lpxC 4331826 .. 4331837 -  -5.8  -4.62069   TGTTTAGCCGAAAAA                GGTG ACTT CACC                 AACCGGGTACGCAGC  76 122
   Rpal_4038 NONE
   Rpal_4037 4328758 .. 4328768 -  -2.4  -3.75169   GAGCATCGCACCAAA                 GCCG TGC CGGG                 TTTCACCTCGAAATA  51 355
   Rpal_4035 4326316 .. 4326357 - -22.5  -2.71681   GAAGCGTCCCAACGA GTCATTCCGGG-GCGCTCAC GAA GTGAGCGAACCCGGAATGAC GGGGTCAGTTTCCGA 100 30
   Rpal_4032 4322286 .. 4322298 -  -9.1  -3.05596   CAGCTCGTGATCGAA                GGCTG GAG CAGCC                TTCTGCTGGTGAAGA  60 73
   Rpal_4030 4320561 .. 4320573 -  -4.7  -3.28712   CGCCCCCGGCCACAA                CGCCG CGG CCGCG                ATCCTCAACGACCAC  49 137
   Rpal_4028 4316529 .. 4316553 -   -20  -3.06796   TTTGATCGGATCGAA          CGCGCGGCCC TCCAC GGGCCGCGCG          TTTTGTTTTGCCTAG  93 37
   Rpal_4026 4315076 .. 4315098 - -17.7  -5.48213   GAGTGAAAACAAAAA           GGCGCGGCC TGATT GGCCGCGCC           TTTGATGTTTCAGGA 100 49
   Rpal_4020 4308528 .. 4308549 -  -8.8  -4.09685   GGCGACTTCGGAAAA           CATGTCGA TGCATG TCGACATG            GCGAGCCGCAAAGTG  72 166
   Rpal_4018 4306620 .. 4306661 - -15.2  -2.52543   ACTGTGGCGAACTCA CAGCAACTTCAAGCGGCG GATTCA CGCCGCCCAAAGTGGCTG  TGGTTCAAATCCCTT  76 30
   Rpal_4017 4302666 .. 4302715 -  -6.4  -3.83927   ATACAAAGACCGAAA GCTCG-CTGA-CGGCGCACTGATC GTTC GATCGGTGCGCTGATCAGTCGGTC GCCCTCGCATTCGGG  65 16
   Rpal_4012 4298549 .. 4298572 - -10.9  -3.05463   AGCCCGCCGAGCGAA          GGCGCCCCG GTCATG CGGTGCGCC           TCCGCAGCAGGTAGG  66 12
   Rpal_4011 NONE
   Rpal_4010 NONE
   Rpal_4009 4295898 .. 4295924 -  -6.4  -4.11751   ATCAACCGGCGAAAA         CGACGTTCCGGC GAT GCGGGATTGTCG         GCGCTGGAATTACCC  69 35
   Rpal_4008 NONE
        thyA NONE
   Rpal_4006 4293326 .. 4293338 -  -4.7  -3.14132   GCCCCCGCTCAGCAA                GCCGC GTC GCGTC                GATAGGTCACATAGG  48 6
   Rpal_4005 NONE
   Rpal_4004 4291057 .. 4291078 - -17.3  -4.55128   AGGCCGAAAGCAAAA           CGGGCCGCT TGTG AGCGGCCCG            TTGCAGTGTCGTGGT 100 47
   Rpal_4003 4290476 .. 4290498 -  -6.3  -4.41348   CGTGCGCGAAAGAAA          GCGCAGTCGC GTGA AC-ACTGCGC           CCGATCCTGGGATCG  76 184
   Rpal_4002 NONE
   Rpal_4001 NONE
   Rpal_4000 4286859 .. 4286871 -  -5.5  -3.05384   CCCTCTCCCATCCAA                TCGCG TCG CGCAA                CTACTCGCTCAGTAC  49 26
   Rpal_3999 4285391 .. 4285403 - -10.5  -2.57564   CCAGTCGCTGACAAG                CCGCG CCG CGCGG                ACGGCACCGGCCGGG  59 191
   Rpal_3997 NONE
   Rpal_3996 4282384 .. 4282396 -  -2.7  -2.92792   ACGCATTGGAAACGA                TGATC CTC AATCA                CAATGAGCTTCTAGG  40 301
   Rpal_3974 NONE
   Rpal_3973 4267003 .. 4267014 -  -5.8  -3.23216   GTCGACGAGGACGAA                GACG ACCG CGTC                 CAGCGCGCGGCGGAG  51 86
   Rpal_3970 4261935 .. 4261961 -  -5.1  -3.67134   AAATCATTCTAAGAA        GCAGCCTCCGTA AACA TCCGGAAGC-GC         GACACATCTCGGTAC  55 154
   Rpal_3969 4259391 .. 4259403 -  -5.5  -3.07192   AACCTCGGGAATACA                GACCA GCA TGGCC                GCTCCAGTTGTCGCG  49 47
   Rpal_3968 NONE
   Rpal_3967 4257795 .. 4257826 -  -5.7  -2.64144   TGCCGAGCGAAACAG      CCATCGCTCACTC CGCCGC GCGGGCGCGATGG       GCGCTGCCGTGGCTG  46 1
   Rpal_3966 NONE
   Rpal_3965 4256220 .. 4256235 -  -5.4  -3.53012   GCGTGCCGCGCGAAA              GCCTCGC TTC GCGAG-C              GAACGACTCTCCCCA  53 240
   Rpal_3961 NONE
   Rpal_3960 4249830 .. 4249852 -  -8.3  -3.28712   TTTGTCGGCTGAGAA           GGGTCGGCG CATGT CACCGCCCC           TTCTTTTCCCCGTTA  60 38
   Rpal_3959 NONE
   Rpal_3958 NONE
   Rpal_3957 4246458 .. 4246479 -  -3.6  -3.06261   GGCGAATGCGGAACA           GCTGG-CGC CATTC GCGACCCGC           CCGCCTTGCCCGGGC  43 151
   Rpal_3956 NONE
   Rpal_3955 4243291 .. 4243314 -  -2.3  -3.55761   GATCTATGGCTGAAA          GGCCCGG TGTATTTCGG CCGCGCC           GCATCGCTGCGCGAG  48 341
   Rpal_3953 4241095 .. 4241105 -  -5.4  -4.09243   GAGACTTTCGGAAAA                 TTCG CAC CGAA                 CGCGTTACTTTCTTC  63 39
   Rpal_3952 NONE
   Rpal_3951 4239154 .. 4239172 -   -11  -2.52896   GCACCCGGGAAGCGA             CCTTCGGC GAC GCCGAAGA             ACTCGCACAGGCGAT  59 292
   Rpal_3946 NONE
   Rpal_3945 4232263 .. 4232274 -  -5.8  -3.23216   GCTGACGATCAGCAA                GGCT GCCA AGCC                 GGCGGCGGCCTGAGG  51 87
   Rpal_3942 NONE
   Rpal_3941 4228580 .. 4228638 - -11.4  -2.71924   CACCTGTGCCGAAAT GCGCAAGCGGCCGCGCTGCGGCATGCGG CCA CCGTTGGCCGCAGCGGAGGCGATTGCAA GCAGGTTTCAGTCTT  63 33
   Rpal_3940 NONE
   Rpal_3939 4226706 .. 4226723 -  -4.1  -2.94099   GGCGTCGACGAGATA             GGCCAAT TTAC ATCAGCC              CTTCGCGTCGTTCCT  44 15
   Rpal_3938 NONE
   Rpal_3937 NONE
   Rpal_3936 NONE
   Rpal_3935 4222989 .. 4223008 - -11.4  -3.14881   GAACGTGGTCATGAA            GCACCTCG CTTA CGAGGCGC             GACCGCAACCACTTC  67 163
   Rpal_3934 4220826 .. 4220846 - -12.5  -3.06183   CGGACGGTGATCGAA            CGCGAGGCG CTA CGGCTCGCG            ATCGACAACGGCGGC  67 443
   Rpal_3932 4219045 .. 4219103 - -10.7  -3.09516   GCGGTGACGACGTAA CCGTCCGGCAGATGCCGGAAGTCGAGC TTGAC GCCCGGCTGCAGGCACCAGTCGAGCGG CACTTCGTCGATCGT  66 334
   Rpal_3927 4212731 .. 4212742 -  -3.6  -3.11634   TTGGACATCATCCAA                CGGC CTCC GCCA                 ACTCATTGGTGGCTT  44 6
   Rpal_3926 NONE
   Rpal_3925 NONE
   Rpal_3924 4208245 .. 4208259 -  -4.2  -3.66356   ACTGGCAAGGCGAAA               CCATCG ACA CCATGG               GCCGGCCGTTCCAGG  54 326
   Rpal_3921 4206524 .. 4206571 -  -6.1  -3.72576   GGCGCTCCCACGAAA CGGCCAAG-CCCGCCTGCGCGCC CCTC AGCGCGC-GCCGCGTCCCGCCCG CTTCTGGGGAGCCGA  60 2
   Rpal_3918 4203610 .. 4203626 -  -8.7  -2.64735   AGCCGAGCCACACGA              TCCGTCG CGT CGACGAA              CGAGCATGGCCGCGA  53 95
   Rpal_3917 4202587 .. 4202624 - -15.5  -3.01785   GCTCAAAACACTATA   CCACGTCAGCCGCGGCG CTGT CGCGGCGCCTGACGTGT    GCGCCGCGGCACTTT  81 172
   Rpal_3916 4201702 .. 4201720 -  -7.4  -2.55074   GCGAACCGCAATCGA             GGCCGA CCACAAT TCGGCC             GATTAGAGCCCGATC  51 28
   Rpal_3915 4201268 .. 4201315 -  -9.6  -3.31461   GACGCAGTGGCAGAA CGTCGCGAGTGCTATTGCGCGG CTGG CCGCGCAGTTGCACGTGCGGGG CTGATGGGCCGAGAA  63 46
   Rpal_3913 4200064 .. 4200074 -  -2.4  -2.64747   CCACGTCATGACAAT                 GCAG CAG CGGC                 GACGCAATGGTTTTT  38 40
   Rpal_3912 4199478 .. 4199493 - -11.8  -2.57092   AACGTGACGAAGCCA              GCGGCG ACGC CGCCGC               CCCGCTCACCCGATC  65 31
   Rpal_3908 4195860 .. 4195889 -  -7.1  -3.00298   GCCGGGAAGTACACA       CCTTCGCGGACGGC GCG ACCGCCGGC-AAGG       TCTTCCCTTTCGGTC  51 391
   Rpal_3905 4192877 .. 4192898 -  -8.7  -3.01712   CTTCGGTGCTCAAGA           CTCGCCCAT CGCT ACGGACGAG            TGGCGTCGAGGCAAA  57 209
   Rpal_3904 NONE
   Rpal_3903 4191922 .. 4191938 -  -9.5   -3.2827   CGACGCAAGGATGAA              CGAAATG CTG CATTTCG              GCGGCTCTATACCCT  63 178
   Rpal_3900 4186619 .. 4186673 -  -5.5  -3.44622   TATTGGGACAAGCAA CGCGACGGCGCCCCTGCCCCGGATCGC AGC GCGAT-CGAGCCGGGTGCGTTG-CGCA GCCTGCTCGGGGACA  53 462
   Rpal_3898 4185248 .. 4185261 -  -8.1  -2.78816   CCAGGTGCGATGACA               CCGCA ACAT TGCGG                CGATTCAGCGATATG  54 80
   Rpal_3897 4184452 .. 4184469 -  -8.3  -2.58663   AGCGAGGCGCAGAAG             GCCGGCG CCCT CGCCCGC              GGCGACGTGCGCTTT  52 206
   Rpal_3895 4181538 .. 4181566 - -13.1  -3.24513   ACACCCACAATCGAA        TGGCACGCCGC GTCATCG GCGGCGTGCCC        TTTTCAGGTCGAACG  73 41
   Rpal_3894 NONE
   Rpal_3893 4180103 .. 4180131 - -10.2  -2.66316   GCGCCGACGAGATCA       TCGC-CCACGGCG CCCG CGCCGCGGAGCGC        GCGATCGACTCGATC  57 120
   Rpal_3891 4177697 .. 4177707 -  -6.8  -3.40403   CCCCGCGGATGAGAA                 CTGC GGT GCAG                 TCGAACTATTCCCGA  57 202
   Rpal_3890 4175148 .. 4175174 -  -2.8  -3.34398   GTTGTCCTGCAAACA         GCTTAGCACGTG AGT CGCGAACTCAGC         GCCCCGGACCTTGGT  46 50
   Rpal_3889 4172869 .. 4172889 -  -3.8  -4.07885   GATCGCCGCCGAAAA            GGCGCGGC TGTCC GAAGCGCC            GCTGGTGATCGCGGT  61 366
   Rpal_3887 4171662 .. 4171682 - -10.4  -3.05647   CGGCAATGACATAGA            TGACCGGG ACTAA CCCGGCCA            TGAACAGTCAGTAGG  62 97
   Rpal_3885 4168037 .. 4168055 - -10.2  -2.63715   AGCTATTTGAGACGA             CGGAGCGC GGC GCGCTGCG             GCTGCGCCGCGTTCA  59 38
   Rpal_3882 NONE
   Rpal_3881 4165876 .. 4165903 - -11.2  -2.67515   CGCACTATCAGATCA        CCGAGCGCGGCA CCTC CGCTGCGCTCAG         AAGCTGACGCAGCTC  62 22
   Rpal_3877 4163549 .. 4163571 -  -4.1  -3.15544   GCGGACGTGCAGGAA          CGGCGCGTTG TTAG CAA-GCGTCG           CGCGACGATCACCAC  47 34
   Rpal_3876 4162323 .. 4162338 -  -3.2   -2.9162   GAACCGTGCAAACCA              CCGCTC ACCG AAACGG               CATCTGCTCATGCAA  42 411
   Rpal_3874 4161149 .. 4161199 -  -8.9  -3.83226   AACGACGCACAACAA TCTCGGGATTCCGGGTTCGCTCGC TGTC GCGAGCGC-CCCGGAATGACGACC GGGTCGTGTCGGCGG  71 43
        folE NONE
        hisI 4158937 .. 4158950 -  -5.2  -4.59414   CTACAACAAGGAAAA               GGGC TCCAGC GCCC                AGGGCAGCAAGCAGC  77 244
   Rpal_3869 4157179 .. 4157192 -  -5.9  -2.57463   AACTCGGTGCAGAAT               CAGCG CGGT CGCCG                CAAGCGGAATGGCTG  46 48
   Rpal_3863 4150010 .. 4150040 -  -8.3  -3.14931   GGCATTGCCTATCAA      CATGTCGTCCCCGC GCAG GCGGGGACC-CATA       CGCCGCAGCATATCG  58 177
   Rpal_3860 4148309 .. 4148339 -   -11  -2.52676   GACGTCGGGAATCGA       TCGTGCCGCGGACG GTC CGGCCGGGGCATGA       TCGCATCGAAGCTAC  62 37
   Rpal_3859 4147612 .. 4147644 -    -4  -3.24925   ACCTGATAGCAGCAA     CGGCCGGCCGCGC GAACGGCT GCGCGGCGCGC-G      TGCGATCACAAAACA  47 193
   Rpal_3858 4146737 .. 4146770 - -17.5  -2.79796   CCCCATGTTACGAGA     TTCCGGGTTCGCGAGC TTT GCTCGCGC-CCCGGAA     TGACGTGGGGAGAGG  84 99
   Rpal_3855 4142180 .. 4142228 - -19.6  -3.53012   CGCCGGGCGGCGAAA TCAATCGCCCGCCGTGCCGCG AGGGGAAG CGCGGCGCGGCGGGCG-TTGG GACGGCTGAAGATCA 100 38
   Rpal_3854 4141683 .. 4141720 -  -4.8  -2.66316   GCCGGCATCAGATTA   GTCGCGGCAGATTGCGA TCCGG TCGGGATCAGC-GCGAC   AATTTTTCCAGTTCG  43 16
   Rpal_3853 4140741 .. 4140760 - -12.1  -4.56597   CGGCTGGCGCAAAAA            GGCCGGC GCTGAG GCCGGCC             TTGAAGCTGCGATTC 100 74
   Rpal_3852 4140386 .. 4140402 -  -2.1  -3.02511   GGCAGCCCGGTAACA              GCTACCA CCT CGGCGGC              GTCGCATCCGCGGCG  41 123
   Rpal_3851 4139717 .. 4139731 -  -9.2  -3.04263   ACCTGACGCGCAACA               CGCCGG CCG CCGACG               GCTACGAGCATCGGA  57 523
   Rpal_3849 4138599 .. 4138612 -  -6.7  -3.75153   TTGTCCGAACGCAAA               TCCAC AGGC GTGGA                TCGGAGCGTGGTCGA  62 50
   Rpal_3848 4137978 .. 4137988 -  -6.8  -3.63968   GCCCAAATTTGTAAA                 CCGA AGG TCGG                 GAGTTCGATCCTCTC  59 78
   Rpal_3846 4135250 .. 4135272 -  -8.4  -3.01712   GGGGTCGGCCGAAGA           GCGGCCAT CAACGGT ACGGCCGC           GGGCCGGGCCGCGGC  57 10
   Rpal_3845 4134636 .. 4134678 - -20.7  -3.42503   CGCTAAGATCCAGAA CGCAAAACGCCCGCCCGCA TCGGC TGCGGACGGGCGTTTTTCA GCCGGCGAGATGCCG 100 46
   Rpal_3842 4130043 .. 4130058 -  -4.6  -3.47349   GGTCGAAAGCCACAA              TCGAGC ACGA GCTCGT               CATCGGACCGCGCCG  53 25
   Rpal_3841 4129372 .. 4129405 -  -3.9  -5.00884   AGCCCGGGGAAAAAA     GCCCATGAGCAAAACA TAC CATCTTAC-CACGGGC     GGTCCCGACGACCAG  81 83
   Rpal_3840 NONE
   Rpal_3839 4126226 .. 4126241 -  -4.6  -3.64703   CCGGCCCGATCGAAA              CCGACA TGAC CGCCGG               CATGATCGAGGCTCT  55 194
   Rpal_3837 4123492 .. 4123523 -    -8  -2.54634   CGCGAGACCATCAAC      GTTAGCACCCTGGCG CTC CGCCTGC-TGCTAAC      TCGGTTGCGCATGAT  51 286
   Rpal_3835 NONE
   Rpal_3834 4119878 .. 4119902 - -12.2  -2.54723   TTCCAAGAGGAAGAT          CGGCGCTTCT AGATA AGAAGCACCG          CAGCAGGATCTCTGA  65 54
   Rpal_3830 4114861 .. 4114901 - -18.9  -2.87132   TGTCCTCGCGAGACA  CGGCCGGTCGGCTGCGCCC CAG GGGCGCAACCGACCGGATT  CAATCAGGCTTGCCG  91 70
   Rpal_3829 NONE
   Rpal_3828 NONE
   Rpal_3827 NONE
   Rpal_3826 4110719 .. 4110768 -  -7.8  -3.63515   CGGCACGCCGAACAA TGGCGGC-GCGGTGGTGACC-GCC GGCG GGCTGATCTTCATCGCCGCCACCA CCGACAACCTGATCC  63 229
   Rpal_3820 4103562 .. 4103574 -  -4.8  -3.53012   CTTTTGCCTCCCAAA                CGAC ATGCA GTCG                CGATCATGCTAACTG  53 48
   Rpal_3819 4102467 .. 4102486 -  -6.4  -3.55548   GAACATGGTGTCAAA            TGGGCGAA TGAC TTCGCCGA             GTCCCGTCCGGCCAA  56 130
   Rpal_3817 4099950 .. 4099979 -  -4.3  -3.55444   GTCTCATTTCGCAAA       GCCCA-ACACCG ACCCGTA CGGTGTGTCGGC       GATCGTGGGCAGCTT  53 209
   Rpal_3816 4098686 .. 4098719 - -10.9  -3.42503   GTGCAAGATCGACAA     CCCGGCGAGCGGC-GG ATG CCTGCCGCTCATCGCG     CCGAGCTTTGAGTGA  71 54
   Rpal_3812 4094941 .. 4094953 -  -3.3  -4.30576   TTCGGATCATCAAAA                TCTCG AAA CGTGA                CAGTTTGAATCTCGA  64 45
   Rpal_3811 4091973 .. 4091988 -    -6  -2.82623   TGGTCCTGATAATCA              GGCCGG GTGA CCGGTC               CCCGACACGTAGTCG  46 128
   Rpal_3810 4091146 .. 4091166 -    -9  -5.05782   AGGCATGTCAAAAAA            CATCCGGA CTATC TCCGGACG            CCGTCGATTACTTAC 100 33
   Rpal_3805 4086739 .. 4086751 -  -6.9  -3.60098   ACGGGGCATCCTAAA                CCGGC GGC GCCAG                TTCACTATATTTATC  59 62
   Rpal_3804 NONE
   Rpal_3803 NONE
   Rpal_3802 4078910 .. 4078926 - -12.3  -2.78032   GCGTCCCGAAAACAT              GCGTCAC CAC GTGACGC              GTCACACGGGTACGC  66 495
   Rpal_3797 4076113 .. 4076130 -  -4.8  -2.82023   GACGGAGACCAAGGA             GACACG ACCATG CGCGTC              GGCGGCCCCCACACG  44 306
   Rpal_3795 NONE
   Rpal_3794 NONE
   Rpal_3793 NONE
   Rpal_3792 4073653 .. 4073665 -  -3.3  -3.61398   CCCCTTCTTCAATAA                GCCGA TGC TCGGT                CCTGTGTTCTACGAA  49 276
   Rpal_3789 NONE
   Rpal_3788 NONE
   Rpal_3787 4070535 .. 4070547 -  -2.7  -4.28774   CGAGCGAAGGCAAAA                TAATC CTC GATCA                CATGGAGGGCGTCGA  63 276
   Rpal_3785 4068252 .. 4068263 -  -5.8  -3.58343   TGGAGGAGTTGCAAA                TCGG CGAG CCGA                 GACATCGCCCTCGAT  57 294
   Rpal_3782 NONE
   Rpal_3781 4063726 .. 4063742 -  -7.9  -3.53444   CTAGGTTTCGTCAAA              CGCGCCC AGA AGGCGCA              GTGACAGGCTCAGCG  60 35
   Rpal_3775 4055859 .. 4055874 -  -8.2  -4.25104   TTGTTGGCAGCAAAA              GCGCAG GCCA CCGCGC               GCAACAGAGGCTAGC  79 36
   Rpal_3771 4050843 .. 4050860 -    -4  -3.89956   CCACCAGACATCAAA             CCCGCG ACGCCG CGCCGG              CAAAGAGGTGAGCCA  58 131
   Rpal_3770 4048972 .. 4048996 -  -3.4  -3.54741   CACCAGGGTGTCAAA          GCCGCACGTC TGGCG GGCGTACGCC          TGGGCTATTCGCAGA  49 360
   Rpal_3767 4044898 .. 4044918 -  -6.8  -3.48593   CACGTTGTCAGAGAA            GACAGACC GGTTG GGCCTGCC            GCTTGCTCGGGTCAA  56 384
   Rpal_3762 NONE
   Rpal_3761 NONE
   Rpal_3760 4026221 .. 4026256 -  -7.6  -2.78384   GTTGGCTTGATGACA    CTGGAGGCGCGACGT TCGGCCC ACATCGTGCCTCC-G    ACCAGCACAGCCGCC  52 157
   Rpal_3759 NONE
   Rpal_3758 4024417 .. 4024431 -  -3.5  -2.60075   CTGCGCCTAACCAAG               TGCCA ACCAG CGGCA               AGCAGGGATCAGGAG  39 89
   Rpal_3757 4024070 .. 4024093 -    -3  -3.59979   GCTCCTGACTTGAAA          GCGCTGCTCG GAGC CGAGAATCAC           ATGGCGGGGATCAGG  51 36
   Rpal_3756 4023535 .. 4023549 -  -4.2  -2.71712   TTGCCGGCCGCAAAT               GGCGAA GGC TTCGAC               CGGCGATACGCCTCA  42 64
   Rpal_3755 4023038 .. 4023059 -    -8  -3.37017   AACGTCGAACAGGAA           GCCGTCGGC ACTCA GCCGA-GGC           GATCTCAGCGTGTCG  58 30
   Rpal_3750 4018313 .. 4018338 - -20.5  -4.63218   GCCGCCTGAAGAAAA         GACGGCGGGAC CGAG GTCCCGCCGTC          CGAAGGCATCTTAGT 100 36
   Rpal_3749 4017399 .. 4017424 -  -3.8  -4.06993   CGAGAGACCAAACAA         GGCTTGCGGC ACAGCG GCCGCTCACC          ATCCGTTGCTTCGCC  61 155
   Rpal_3747 4013693 .. 4013705 -  -5.5  -4.14615   AAAAAGCTGGTAAAA                GAGCA CTT CGCTC                GCAGGCCGAGCGGTA  67 219
   Rpal_3746 4011672 .. 4011703 -  -6.4  -3.14931   CGCAGGGGCCAGGAA      CGCCACAAGCCTCG ATCC CGCGTCTCTTGGCG       AGATCGCATCACGCT  53 108
   Rpal_3745 4010121 .. 4010135 -   -10  -3.14564   CGATCGTCTTACGAA               CGACGA TAG TCGTCG               TCGAACCGGATGATG  64 4
   Rpal_3744 4008269 .. 4008288 -    -5  -3.35798   ACGGTCGATCTACAA            GCTGGAATC CGT GATCCC-GC            TGAATGAGCGCCCGT  51 308
   Rpal_3741 NONE
   Rpal_3740 4005024 .. 4005036 -  -6.2  -3.12446   GAGAAACTGATCGAA                GCGC AGCTG GCGC                CGTTTATCGGTGGCG  51 477
   Rpal_3738 4001479 .. 4001503 -    -5  -3.54488   TCGTGTGAAAGAAGA          TGTCGGCA ATCGCGACA CGCCGACA          CTGGCGGCAAGACGG  55 285
   Rpal_3736 NONE
   Rpal_3735 3998571 .. 3998600 -  -7.7  -4.52345   AGAGCACCAAAGAAA       GCAGCGGCCGGGC TTGC ACCCGACCGCTTG        AGACCAAGACCAAAA  81 44
   Rpal_3729 NONE
   Rpal_3728 3988961 .. 3988975 -  -7.8   -3.2302   GGGAACTACAAGACA               TACGGG TTG CCCGCA               GAGGCATATTTCGAC  56 496
   Rpal_3721 NONE
   Rpal_3720 3981884 .. 3981926 - -14.9  -4.89521   AGAGCGCAAAGAAAA CGCCGCGCAGGAAAACGCCTC GAT AAGGCGAT--CCCGCGCGGCG CTGATGATGTGTGGC 100 55
   Rpal_3719 3980371 .. 3980386 -  -3.2  -2.62616   GCACCCGCGACATCA              TGTCCG ATGC CGCACA               ATTCTGTGTGTGTGG  39 46
   Rpal_3718 3978523 .. 3978565 - -19.9  -3.09273   GCTGCTCAAGAGACA CGTGGC-GGTCGGCTGCGCC CCAC GGCTCAGCCGACCGGTCACG ATTGTGCTCGCCGGG  93 69
   Rpal_3717 NONE
   Rpal_3716 NONE
   Rpal_3715 NONE
   Rpal_3714 3974288 .. 3974325 - -14.1  -2.64735   AGTTGATCGACATCA   CTCACCTCCACGGCCGCG GAA CGCGGCGG-GACGGTGAG   ATCAGGCGGCTAGCA  71 311
   Rpal_3713 NONE
   Rpal_3712 3971674 .. 3971689 -    -6  -3.23899   GCTCAACGAACTGAA              GGCGGC GGAA GCTGCC               GGCGGCGGCCGCGCA  53 484
   Rpal_3710 3969886 .. 3969916 -  -4.1  -4.21936   CCGACAATCCCAAAA      TAGTCATACCCGGGC TTG ACCCGGGTAT--CCA      TCTTTTCAAGAGATG  63 88
   Rpal_3709 3968715 .. 3968738 -   -16  -4.57353   CCGGATGATAGAAAA          GGCGCGG-CCG TTT CGGACCGCGCC          TTCATTGTTTGGAAT 100 56
   Rpal_3706 3965664 .. 3965675 -  -2.2  -3.40403   GCCGTCCGAGCACAA                GCTC CGCG AAGC                 CATCCAGATCCGTGC  47 110
   Rpal_3705 3964729 .. 3964772 -  -5.8  -2.57132   TTCTTTGCTTATAAC TTCGGGATTCCGGGTTCGCGC TTC GCGCGC-CCCGGAATGACGTC CTTTGAGGTCTAGCC  46 62
   Rpal_3703 NONE
   Rpal_3702 3961478 .. 3961494 -  -3.6  -3.53444   CGATTCGTGCGCAAA              TCCGGC TGGGC GGCGGA              CCGTGAGCCGCCCTC  49 244
   Rpal_3701 3960674 .. 3960688 -  -4.2  -2.91274   GTCAGGGGAATGACA               TCACCG GAT CGACGA               GCCGTCCGCACCGCC  44 11
   Rpal_3700 3959562 .. 3959577 -  -3.3  -3.87815   GCGGAGTTGGACAAA              GTAGT TACTCG ACTAC               CGCGTCTTTTTGCGA  56 14
   Rpal_3699 NONE
   Rpal_3698 NONE
   Rpal_3697 NONE
   Rpal_3696 NONE
   Rpal_3695 3952624 .. 3952644 - -12.5  -3.17075   CCCCGGTGAACCCAA            CCCTGGCGA TCC TCGCCGGGG            ATGAGCCGACAACGG  73 270
        secE NONE
        nusG 3951785 .. 3951816 -  -3.7  -3.61715   GAGTCTTGCGAAGAA      GGTGGATTGCCGGG TCAAG CCCGGCAATG-ACA      GTGCCCGATCAGACC  53 34
        rplK NONE
        rplA 3950420 .. 3950445 - -18.3  -5.34309   ACGAGCAAACAAAAA         GGGCGAACGGG TTGC CCCGTCCGCCC          TCTTCAAATCATCAT 100 57
   Rpal_3690 3949214 .. 3949225 -  -3.6  -3.02946   TTCCGAACGAGAAAC                GCCG GCAT CGAC                 CCAGGATCCAATCGT  43 227
        rplJ NONE
        rplL 3947261 .. 3947287 - -11.5  -4.25859   CCGAACGCAAAATAA        CGCGCGGG-GCG CTGC CGCACCCGCCCG         TCGAAAACCTCATCG  89 311
        rpoB 3942935 .. 3942968 - -20.9  -2.87211   AGCGCGGCGGAGACA     CCCGGCGGCCGGCGC AAAA GCGCACGCCGCCGGG      CTTGACGCGTTGAGT  93 40
   Rpal_3686 3938582 .. 3938614 - -17.8  -2.87463   AATGCGGCCCAGATA      TGAGAAAGGCCGGC ACAAG GCCGGCCCTTCCCA      GGATTGAATGGCAGA  90 49
   Rpal_3685 3936196 .. 3936230 - -12.1  -3.85864   GCAGGACTACAATAA     GCGACGCCGTGACTC GTTCA AAGCCACGGCGCCGG     ATCTGCTGAAGCGAA  81 67
   Rpal_3684 3933514 .. 3933526 -  -4.8  -2.73243   ACCGAGTTTCGAAAC                CACC CTGCT GGTG                CGCGACACCTGCCTG  43 507
   Rpal_3682 3932744 .. 3932791 -   -20  -3.09635   ATTGCGAGGAGCGAA GCTACGAAGCAATCCAGCTCAG TGCG CGAAGCTGGATTGCTTCGCTGC GCTCGCAATGGCGTT  93 143
   Rpal_3681 3931389 .. 3931416 -  -3.4  -3.11192   CACATGATCACCCAA        TGCAG-CTGCG GAACGGT CGCAGACTGCC        GCATTATCGAGGCGC  44 94
   Rpal_3679 3928801 .. 3928830 -  -9.2  -2.82516   CTGGCGATCAGCACA       GCCTGGCTCTGC CGCGAC GCAGAGCCTGCC        GCCTCTCATCCGGAA  57 41
   Rpal_3677 3926604 .. 3926620 -  -4.4  -3.66178   GGCTTCAATCTCAAA             GC-GGTC GAAA GACCAGC              GTCACGCAGATAGTG  53 61
   Rpal_3674 3922936 .. 3922954 -  -5.8   -3.7282   GTATCTGACGAAGAA             CTGAGGCC GGC GGCCGCCG             CGATCGACCGGTTCT  60 109
        rpsL NONE
   Rpal_3671 NONE
   Rpal_3670 NONE
   Rpal_3669 NONE
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
   Rpal_3659 NONE
        rpsQ 3911611 .. 3911624 -  -3.7  -2.64155   CGCGCGCTAAACTGA               TGCGC AAAT GCGCG                CTTAGGCGGTCTTCT  41 27
        rplN 3911199 .. 3911211 -  -6.9  -2.78384   TTGGCGGCCATCACA                GCACC TCC GGCGC                CAGCGAAATGATCTT  49 8
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH 3909494 .. 3909504 -  -4.6  -2.52464   CCTCCGGCGAATTCA                 CGCC CGG GACG                 ATGCGACAATTTCCG  43 88
        rplF NONE
        rplR NONE
        rpsE 3907885 .. 3907910 - -13.3  -3.21276   CGTCTTGTCAGAAGA         CCGCGTGATCG CCCT CGATCACGCTG          TTATTCGGCCACCAC  73 26
        rpmD NONE
        rplO 3907104 .. 3907120 -  -6.5  -4.57073   GAGCGCGTCGAAAAA              TCCACCG TAC CGGCGAA              GCCGGGCGCCCGCTA  78 65
        secY NONE
   Rpal_3646 3904542 .. 3904571 -  -6.5  -3.72576   TCGGGCCTTATTAAA       GGATTCAGTT-TCG CTT CGTCAACCGAATCC       CAATTCAAGCTCGCT  62 30
   Rpal_3645 NONE
        rpsM 3903966 .. 3904003 - -17.1  -3.65581   ACGAATGGCGAACAA   CAAGTGGCGAATAGGGG AAGT CCCCTACTCGCCATTCG    CCATTCGCAACTCGC 100 45
   Rpal_3643 3903469 .. 3903495 - -20.2  -3.80745   AAACAACGAATAGAA         TCACCGGCGGCC TGG GACCGCCGGTGA         ACAAAACTCAGACGC 100 33
   Rpal_3642 3902318 .. 3902343 - -19.1  -2.87051   GCGCGATGAGGAAAG         CGGCCTCATGG CGAG CCATGAGGCCG          ATCGGCTTAGTAGTG  91 32
        rplQ 3901723 .. 3901744 - -15.1   -4.8622   TGCCGCAACGAAAAA           GGCGGCGCC TTAC GGCACCGCC            TTTCGAAACGTCAGA 100 56
   Rpal_3640 3900408 .. 3900432 -  -3.3  -3.66178   GCCGCCAACCTGAAA          CGCGCCCACGC CCT GCTGGAGAGCG          GCACATCGATCGGGA  53 289
   Rpal_3638 3898940 .. 3898961 -  -7.1  -3.29981   CAGGAGAAGGAAAAG           CGGCCCGCG CTCA CGCCGGCTG            AGCCTCGGCAGTTTC  55 14
   Rpal_3637 NONE
   Rpal_3636 3895775 .. 3895792 -    -4   -3.5627   AGATCAGCCGTCAAA             GCCGGC GATGAA GACGGC              ATTCGGCCTTCGCGG  53 152
   Rpal_3635 3893621 .. 3893641 -  -2.3  -2.70932   GGTTGCGGCCAACCA            TGCTGCGGC CGC GGCGCGGCG            TAAAGCCTAGGCGAG  39 32
   Rpal_3634 3893119 .. 3893132 -  -5.2  -3.68827   CAGGGAGGATGGAAA               CCGG AACTAA CCGG                GTCTTGCGCGCAGCC  58 52
   Rpal_3633 3891758 .. 3891806 - -16.1  -3.07816   CCCGGATGCAGCGAA GCGAAATCCGGGGACCGAACT GGTGAGA AGTCCGATCCCCGCATATCGC TGCGCTCATGCGAGC  84 64
   Rpal_3626 3882653 .. 3882673 -  -8.9  -3.32343   CGCACACGCCGACAA            CGGCGGCAA TCG TCGCGGCCG            GCGACGCCCGCTTAC  60 37
   Rpal_3625 3881489 .. 3881503 -  -9.2  -3.83323   CGCAGAGAAGCCAAA               GCCCCG GAC CGAGGC               ACAGCGCCTGACGCT  74 136
   Rpal_3624 3879932 .. 3879988 -  -2.8  -2.62616   CGAGCGCTGATATCA GCAGCGCGGCCAGCAT-GGAGCGAAGA CCTG TCATCGTTCTGATGTCGGCATCGCCGC GCGCCGCCGCAAGCG  39 52
   Rpal_3623 NONE
   Rpal_3622 3878798 .. 3878817 -  -5.6  -2.57468   TCCGACCAGACTAAG            CGAGGGGC GTAA ACCCGTCG             TTAACTTCTCCGGGA  46 26
   Rpal_3621 NONE
   Rpal_3620 3876173 .. 3876193 -  -9.7  -3.53811   GCCACCGCCGTTAAA            TCTGCATCG GCC CGATGCGGA            ACCGCGATGGCGCCC  68 506
   Rpal_3618 3874382 .. 3874422 - -16.2  -4.62069   GCGTCAGCTCAAAAA  CACGAAGGGCGGTGATCG TGTCG CGATCACCGCCCTTCTCC  AACTCGAACGAGCCG 100 47
   Rpal_3617 3873249 .. 3873274 -  -8.3  -3.78775   TGCGGGAGTACCAAA         CCTGGATG-TCG CGT CGCTCATCCAGG         CTACGCTTGCGGTAA  69 139
   Rpal_3614 3871328 .. 3871362 - -17.9  -4.44667   TGCTGCAACAAGAAA     GCGGGAGCTTCACCC TGGGC GGGCGAAGCTCCCGA     ATGCCATCAGCTTAC 100 37
   Rpal_3613 3869549 .. 3869572 -  -5.3  -3.01791   ACCGCCTGTTCAATA         TCG--CCCGGC AGCA GCCGGGATCGA          TCAGAGCCCACCCTG  47 26
   Rpal_3612 3868803 .. 3868840 -  -2.6  -2.64981   AGACGGCGAAAGCCA   GCGCAACGAGATGCCA CGGTAC CGTCATGTCGATGCAC    GCATCCTTGCCCCGG  38 121
   Rpal_3611 3867980 .. 3867997 - -14.1   -4.2828   CGCGATCGATGAAAA             GCCCCGC TCGC GCGGGGC              TTTTTTTGTACGTCG 100 49
   Rpal_3608 3863087 .. 3863122 - -12.6  -3.19192   TGCGAGCGAAGTGAA    GCAATCCAG-GGCCCGG TCA CTGGGCTTCTGGATTGC    TTCGTCACGGAGCCT  73 109
   Rpal_3607 NONE
   Rpal_3606 NONE
   Rpal_3605 NONE
   Rpal_3604 NONE
   Rpal_3603 NONE
   Rpal_3602 3857417 .. 3857427 -  -2.4  -3.17392   TATCTTGCAATGCAA                 TGCG TCA CGCG                 CTGCATTGCGATGCC  43 52
   Rpal_3601 3855085 .. 3855110 -   -19  -2.73701   TGTGATGAAAGCAAG         CGCCGCCCGG GATGAG CCGGGCGGCG          GCAGGTCGTCGGCCG  87 41
   Rpal_3600 3852079 .. 3852103 -    -2  -2.82623   CGGCGGCCAGAAGGA         GCCGGTCGGGG TTGG CGTC-ACCGGC          ACGTCGGACGGCAAC  40 159
   Rpal_3597 NONE
   Rpal_3596 3847652 .. 3847668 -  -7.9  -2.90723   TCATCCGCAAGCACA              CGCTCGG GCC CAGAGCG              GCATTCCGTTGATCA  53 406
   Rpal_3595 NONE
   Rpal_3594 3844318 .. 3844329 -  -2.2  -2.60194   AGCCGCCCAACCAAG                TGCC TCAC GACA                 AAACCAAAGTTAACA  38 225
   Rpal_3593 3842894 .. 3842904 -  -8.2  -3.55815   AAATAGGCTCGGAAA                 GCCG GAC CGGC                 GCTCGCTCTTTGGCC  65 60
   Rpal_3591 3840868 .. 3840892 - -17.1  -3.53224   GATCGGCCGGCGAAA          GCCTCCGGAGC ACG GCTCCGGGGGC          TTTTTGCTGTCCGCT  93 80
   Rpal_3588 3838369 .. 3838411 -  -5.3  -3.55622   CGCAATTGCGGCAAA GCGGCTTTGCCGG-GCGGCC ATTT GGCCGCACCGGTCATTCAGC AGTCCTTCAGCGTTT  55 66
   Rpal_3587 3837532 .. 3837555 - -16.7  -5.34309   ACCACCAAACAAAAA          GCGGCGGGG AAATAA CCCCGCCGC           CCGAATTGAAGACGT 100 53
   Rpal_3585 NONE
   Rpal_3584 NONE
   Rpal_3583 3832092 .. 3832102 -  -3.2  -2.81291   TCGACAAGGCGAAAG                 TGCC GTG GACA                 GAGGTGTTCGTGGGC  41 278
   Rpal_3581 3830686 .. 3830717 - -11.4  -2.71712   GCGCGTCGGCCAAAG      CCTCGCCCTCAGCG TCGT CGCGGAGGGCGTCG       AGACCACCGCTCAAT  62 259
   Rpal_3578 3826964 .. 3826993 -  -2.7  -4.67982   GCCCATTTAACAAAA       CAATGATGAGGCC ACAA GGCCAGATCAGCG        TCGATCTGGGGATCG  72 20
   Rpal_3573 3821889 .. 3821904 -  -4.7  -2.64704   TAACAAGACATGAAG              GGACT TATTTC AGTCC               GAACCACAGCGTCGC  43 14
   Rpal_3572 3821480 .. 3821502 -  -6.3  -2.54955   AGAAGTAGTATGAAC           CGATCAGCA CTCGC TGCCAATCG           CTGGCGCGGCGACGA  48 6
   Rpal_3571 3820520 .. 3820530 -  -2.4  -3.46144   AGAGCAGGAAGAACA                 TCGG TCA CCGG                 CACGCTGAAGATCAT  47 90
   Rpal_3570 3819516 .. 3819527 -  -7.2  -4.15044   GCCGTGCTGAACAAA                GCCG GCCA CGGC                 ACGCTCAGCGCGCCG  67 224
   Rpal_3568 3818518 .. 3818542 -  -7.7  -3.53012   TCGGCTCCCCCCAAA          CCCCGTGGGCT TAT AGCACGCGGGA          CGCTCTTCTGGCCAG  60 144
   Rpal_3567 3818156 .. 3818171 -  -2.4  -2.73007   AAGACTTGGCGAAAC              GCGTCC CCGA GATCGC               TGTCCCCTGCCTCGG  39 111
   Rpal_3566 NONE
   Rpal_3565 3816561 .. 3816580 -  -4.8  -3.40403   GCGGCTGGATCACAA            GGGTGCGG CTAG CCGCGCCT             ACAGCAGCCCGAGTT  53 24
   Rpal_3563 3814358 .. 3814368 -  -2.4  -3.61646   AACTGCACAAACCAA                 CGGC CGA GCGG                 AATAGTTTTCGCCGT  49 157
   Rpal_3562 3813322 .. 3813345 -  -5.2  -2.62184   GCTCGCGGGACATCA          GGGCTCGC TCTGCGCT GCGAGACC           TATGTGGAGACAGCG  43 78
   Rpal_3561 3812555 .. 3812567 -  -6.9  -4.65895   GGTCGCACCGAAAAA                GCACC GGC GGCGC                CTCGCTGGCGGCTAC  78 37
   Rpal_3560 3811495 .. 3811517 -   -22  -3.32647   CTCGAACGAGACCAA           CGCGGCCGGG CTC CCCGGCCGCG           TTTTTCGTTGGCCTC 100 303
        clpS 3807086 .. 3807104 -  -3.1   -3.5764   AACCTGATCGCGAAA             GACTGGT TCCGT ATCAGTC             CGTCCACCCAGCAAG  51 106
   Rpal_3556 3804454 .. 3804483 -  -8.4  -4.42386   GGCCGAGCCAGAAAA       GCCGGAAGCGCC CGTCCC GGCGCCACCGGA        CGAGCAACCGTCGCC  79 149
   Rpal_3554 3800949 .. 3800971 -  -4.8  -3.22388   GACCGAACGCATCAA           TCAGCAGC TCCGCAC GCAGCTGA           GCGAACTCCGCTCCC  48 65
   Rpal_3552 NONE
   Rpal_3551 NONE
   Rpal_3550 3798598 .. 3798609 -  -7.2  -3.57144   CTGGTGATCCCGAAA                GCGC CGGC GCGC                 AACATTCTCGACATC  58 304
   Rpal_3545 3794289 .. 3794308 -  -9.2  -3.20349   CGTTGAAACTGAAGA            CCGCCGAC TTCC GCCAGCGG             ACCCGGGCGCAGACC  59 429
   Rpal_3542 3792517 .. 3792527 -  -4.6  -3.16564   CTCCTACCCGATGAA                 CCGC CGG ACGG                 TCTCGATGAACTTGC  48 3
        pleD 3790982 .. 3791011 - -23.7  -2.87132   CGCTTCGCCCACAGA       TGGCATCGCCCGC GCAG GCGGGCGATGCCA        TATCCCAGAGCCTCC 100 135
   Rpal_3539 3788728 .. 3788743 -  -6.8  -4.15222   AGGCCTGCGAAGAAA              CCG-GGC TGT GCCTCGG              CTGCAAGACCGACGC  67 454
   Rpal_3534 3782102 .. 3782138 - -15.2  -5.00616   GCCGGCTCCAAAAAA    GCCAACGGCCCGAAGC GGTGA GCTTCGAGCCATTGTC    CAGGAGCGGACGTAC 100 226
   Rpal_3526 3772321 .. 3772340 -    -7  -4.42653   ATGTTACGCAGAAAA            CCGCCGCG ATGA CATGGCGG             ATCGCCACGCCCTCA  76 38
   Rpal_3525 3770528 .. 3770582 - -10.1  -3.09635   ATTGCGAGGAGCGAA GCGA-CGAAGCGATCCAGAAACTCAG TGCA CCACACCTCTGGATTGCTTCGCTCGC CATGACGGAGTTAGC  62 65
   Rpal_3522 NONE
        gatC NONE
   Rpal_3520 3767504 .. 3767514 -  -2.4   -3.8186   CATGCCAAGGAAGAA                 GTCC GCT GGGC                 CGCGCTCTTTCGGCG  54 289
        gatA 3765568 .. 3765585 -  -4.1  -3.73072   AACGGCGCCAGCAAA             CGCAACGT CAA ACGC-GCG             CGGACGATCGGACTC  56 39
   Rpal_3516 3764396 .. 3764406 -  -2.4  -3.44146   TTGTGGCATAAGCAA                 GGCG AGG CGCG                 CGTGTTCGATCAATT  47 35
   Rpal_3515 3762796 .. 3762836 - -10.3  -3.28924   CAGGTGCGTTCATAA  GCAGGTTTCTACTCCGCTC CGG GCGCGGAGAAAACCCCTGC  AACCGGCGCAAGGCG  66 78
   Rpal_3514 3761006 .. 3761031 -  -6.1  -4.10429   AACTACTTTGCAAAA         CCGGACCGA GCGCCGAG TCGGTCCCG          CAAGGCCATCCGCGG  65 225
   Rpal_3513 3760353 .. 3760373 -  -6.8  -3.72576   TCGCCGCCCATGAAA            CTGCGGAC CTGGT GTCCGCAC            CGTTCGAAGAAAAAC  62 222
   Rpal_3512 3759508 .. 3759523 -  -6.1  -3.53012   TCTCCTCCTTTGAAA              GCTCC CTTGGT GGAGC               ATGAAGAGAAGATAT  55 131
   Rpal_3511 3758992 .. 3759025 - -14.5  -3.16921   ATCAAGGTGCAGTAA     GATCCGGCGGCGG-GC AAC GCACCGCCGCCGTCTC     GCTGCCCGAAGGGGT  80 40
   Rpal_3509 NONE
        panB 3756387 .. 3756422 - -13.3  -3.75153   CGCTGGCAAGGCAAA    GCGAGCCGGATCAAGG GGATA CCTCGA-CCGGCGCGC    ACGCCTCCCGTGACC  81 41
   Rpal_3507 NONE
   Rpal_3506 3754949 .. 3754963 -  -2.1  -2.54801   GAGGGTGAAAGACAT              GGCTGA TCCG TC-GCC               GAGAAGCGGCGGCCT  38 84
        engA NONE
   Rpal_3504 3752217 .. 3752242 -  -7.5  -3.01924   CATCTCCGCCGAAGA         CGCTGCGCGTCC GCT GG-CGGACAGCG         AGTGCCCGCTGATCA  54 69
   Rpal_3498 3745302 .. 3745317 -    -6  -3.18452   ACGAGGTCAATGCAA              GCCCTG AAAC CTGGGC               GACGATCGCTCGAAA  51 392
   Rpal_3497 NONE
   Rpal_3496 3743258 .. 3743297 - -22.4  -2.55544   CGAGGAGCGAAGCGA  CGAAGCAATCCAGCACAG TGAA CTGCGCTGAATTGCTTCG   CGTCGCTCGGAATGA 100 62
   Rpal_3493 3739727 .. 3739759 -  -6.3   -4.0162   GCGGCAGAGGAGAAA     CGGCTGCGCGGC ATGGAAAAGA GCCGCA-AGCCG      CGGATGCAACTCGCC  67 71
   Rpal_3491 3737257 .. 3737277 - -19.7  -4.72272   TCGCCCCATGAAAAA            GGGCCGCGC ATC GCGCGGCCC            TTTCAATGTCAGCAG 100 51
   Rpal_3485 NONE
   Rpal_3484 3731160 .. 3731176 -  -9.3  -2.65298   TGCATTGACCACAAG              CCCGCGG CGA CTGCGGG              GGACCGCGTGCGCCG  56 62
        acpP 3730611 .. 3730649 - -16.8  -4.17048   CGCGGTGCAAAACAA  GAAGCCGG-TGGACCGC TTTTGT GCGGTCCGTCCGGCTTC   CATCACACCGCGCGG 100 45
   Rpal_3482 NONE
   Rpal_3481 3727779 .. 3727799 -  -3.8  -3.65046   TTTCGAGGTTAAGAA            TCGCCACG ATCGG CGGGGCGG            AACTTAACGCAAACC  53 74
   Rpal_3480 NONE
         gmk 3726068 .. 3726087 -  -8.5  -3.05384   GGGCCGCGGAGGTAA            GCGCCGC CAAGCC GCAGCGC             ACACCTGACACGACC  55 131
   Rpal_3470 NONE
   Rpal_3469 NONE
   Rpal_3468 3712984 .. 3713004 - -14.7  -3.33815   AGTGGTTGGAAGCAA            GTGCGGCGC AGG ACGCCGCAC            AAGGCTGAGAGTTAC  82 37
         ndk NONE
   Rpal_3465 3709618 .. 3709635 - -12.7  -3.45839   ACGTTCAAAGATGAA             GCGAGCC ACCC GGCTCGC              TTTTTTCTTGTCCGG  76 62
   Rpal_3463 3708015 .. 3708028 -  -5.2  -3.64703   GGTCCGCTACGCAAA               GCGC ACCTGA GCGC                ACCCTGATCGTGCCC  57 116
   Rpal_3460 3705490 .. 3705506 -    -5  -4.07885   CATGCCGGCCCAAAA              CGCGGC CGGCC GACGCG              GTCAACGGCTTGGCT  63 27
   Rpal_3459 3704743 .. 3704755 -  -6.2  -3.32536   AAACGAGGCGCAGAA                GCCG TCAAG CGGC                GCACCGTCCCGCCAT  52 58
   Rpal_3458 NONE
   Rpal_3457 3700451 .. 3700499 - -15.3  -2.52543   ACGCGCCCGAAGTGA TCCTCGCGGCGATGCAG-GCCG AGCTGG CGGCGCTGCATCGCAGCGGCGA GCTGCGCGACATCCC  73 435
        aspS NONE
   Rpal_3452 NONE
   Rpal_3451 NONE
   Rpal_3447 3687733 .. 3687745 -  -3.4  -3.53012   GGCGGCGTGCGGAAA                CGAT TACGG ATCG                GGCGCGTTAATGCAT  49 480
   Rpal_3445 NONE
   Rpal_3444 3686377 .. 3686392 -  -6.8  -2.70232   GCGAACAGGACATCA              CCGAAC TGCG GCTCGG               CCAGAAGATCCTGGT  48 178
   Rpal_3442 NONE
   Rpal_3441 3684101 .. 3684119 - -10.4  -2.64877   CCTAGACAGAAGTCA             TATTGTGC ATT GCACAATA             ATATTCAAGACCCAT  59 200
   Rpal_3440 3683367 .. 3683391 - -17.1  -5.86061   TTTGACCAAAAAAAA          CGCCGCGGGCT GTT AGCACGCGGCG          TTGTTGTTTTGCGGT 100 50
   Rpal_3437 3681309 .. 3681337 - -10.2  -2.54896   GGCGGACGCAATGGA       CGCCGAGCGCAGC ATCC GCCGCGCG-GGCG        CCGCAGCCGGGCCAT  59 221
   Rpal_3436 3679416 .. 3679433 -  -4.8  -2.71712   TCGGCGTCGTCAAAT             CTCGAG CTGCGT CCCGAG              TTCGACCACGCGGTC  44 2
   Rpal_3433 3677686 .. 3677702 -  -9.4  -3.51329   GACGCTGAATGAGAA              CCTCGG CGCGT CCGAGG              TGTCGCTGAGCGCGG  64 154
   Rpal_3429 3673374 .. 3673406 -  -7.5  -2.98545   TGTTGAGAACAATGA      GGGGCAGCCGCGCCT TAG AGGCGGAGCCGCGAC      GATTAGTTCTGCGCG  54 28
   Rpal_3428 3669949 .. 3669975 - -14.4  -3.18274   CCGAGCTGAAGCGAA         GCGGCGCCGAGT AAG ACTCGACGCCGT         TTCGGCCGCTCATCC  80 99
   Rpal_3422 NONE
   Rpal_3421 3661973 .. 3662028 - -14.1   -3.2218   GGGAAGAGCCAGGAA GCCTGGCTGACCGCGGTAGCCGGGATC CTCG GACCCCAGCCACCGCAG-CAAC-AGTC AGCGACTGTCTTAGA  76 36
   Rpal_3420 3660958 .. 3660969 -  -7.2  -3.59979   GTTGCCGACGGCAAA                CGCG GTCG CGCG                 ACGCAGGCACCAGCG  62 306
   Rpal_3417 3657710 .. 3657736 -  -5.2  -4.11751   ATGAAGCGGTCAAAA        TGCTCGCC-CA CGAAAT TGCAGCGAGCA         TCCAGGACCAGTTAC  64 242
   Rpal_3414 3655711 .. 3655727 -  -5.1  -3.27994   GCAATTTGACACCAA              CCAATGA AGG TCATGGG              TTTCGTCCTTGTTGT  50 62
   Rpal_3413 3654030 .. 3654043 -  -2.4  -2.53747   GAATTCTCAGAACAG               TGTC TTGGCC GACA                TCGAGACCTGCTCGA  37 3
   Rpal_3412 NONE
   Rpal_3411 3651244 .. 3651260 -  -3.5  -3.06162   TATCCGACCGCAACA              GCCTCGC CTA GCGGCGC              ACCTTAGCGCGGCGC  43 29
   Rpal_3410 NONE
   Rpal_3409 NONE
   Rpal_3408 3647203 .. 3647230 -  -7.6  -2.87211   ATCCGGCCCGATACA        CGCCTGCCGATCG TCC CGCT-GGCTGGCG        ATTCCGCCGCGCATC  52 131
   Rpal_3403 3640833 .. 3640856 -  -2.2  -2.62184   GGTCGTCGGACACTA          CCCGGCCGCA CGCC CGCAGCGGCG           CGACCTTAGCGCCAA  38 94
   Rpal_3402 3640043 .. 3640055 -  -7.7  -3.26947   CAATTGCGAGAGGAA                GGATC GAC GATCC                GTCCGCGCCGCGATG  58 109
   Rpal_3401 3639174 .. 3639186 - -10.5  -3.05384   CGGCTTCTGAGTGAA                CCGCG TGT CGCGG                TTGGACGTGGTGCGT  62 264
   Rpal_3400 3638686 .. 3638702 -  -5.1  -3.14132   CGGCCTCTCCATCAA              CGGGT GGGACAA ACCCG              TCCTGGTGACGCCGG  48 127
   Rpal_3399 3638093 .. 3638105 -  -6.2  -2.89668   GAAGAGCCTGACAGA                GCCG GGGCA CGGC                GAAGGATAAATAGCA  48 111
   Rpal_3395 3634506 .. 3634563 -  -5.3  -3.79906   TCAGTGCCATAAGAA CTGGCGCGTCACATTTGGCGAAGCTGCA TGG TGCAGCGGCGCCGGGCTTGACGCGGC-G TCCTGCGCGGTGTGG  58 428
   Rpal_3360 NONE
   Rpal_3359 3614188 .. 3614214 -  -6.4  -4.88918   TTAGTTTAAATAAAA         TCCCGCTCCCTT CGC AGGGGACCGGGC         CCGAAAAGCGTCTCT  83 64
   Rpal_3358 3612653 .. 3612681 -  -7.9  -3.45366   CGTTGAACTAAGGAA        GTCCGGCCGCGTC ACC GCTGCAGCCGGTC        GTTTCTCGTCGGCTC  60 106
   Rpal_3357 NONE
   Rpal_3356 NONE
   Rpal_3355 3610295 .. 3610311 -  -7.9  -3.14132   GCGCCGCGGCAGGAA              GGGCACC AGA GGTGCCG              ATCGGGCCGTCGCGG  56 128
   Rpal_3354 NONE
   Rpal_3353 NONE
   Rpal_3352 NONE
   Rpal_3351 NONE
   Rpal_3350 NONE
   Rpal_3349 NONE
   Rpal_3348 NONE
   Rpal_3347 3606572 .. 3606584 -  -4.8  -2.96216   GTCGATGACCAGAGA                GACC CGCAT GGTC                AGCTGTTACTTTCGT  46 24
   Rpal_3346 NONE
   Rpal_3345 NONE
   Rpal_3344 NONE
   Rpal_3343 NONE
   Rpal_3342 NONE
   Rpal_3341 NONE
   Rpal_3340 NONE
   Rpal_3339 3598989 .. 3599005 -  -2.1  -3.55071   GTAGATGGCGTGAAA              CATCGGT CTA ACCGTAG              TTCTTCAGGATGCAG  49 16
   Rpal_3338 NONE
   Rpal_3337 3598199 .. 3598217 -  -5.2  -3.06515   CCCGACGTCGAAAAT             CCGGCTCA CCA TGATCCAG             TCTTTCCCGGAGCGA  47 12
   Rpal_3336 NONE
   Rpal_3335 NONE
   Rpal_3334 NONE
   Rpal_3333 NONE
   Rpal_3332 3594056 .. 3594093 - -11.3  -2.62263   ATTGGCGCGAGATGA   TGGCGCTGCTTCGCCGCT GAG AGCG-CGAACCAACGCCC   GATGCCTCGACACCC  62 286
   Rpal_3328 3589378 .. 3589393 - -10.4  -2.67188   CTACAGGACTACAAT              GTCCGC CGTC GCGGAC               GGCCGCGACCTGATC  59 404
   Rpal_3324 NONE
   Rpal_3323 3580847 .. 3580890 -  -8.9  -3.06183   GTCATTGCGAGCGAA GCGAAGCAATCCAGAGCTCG GTGCG CG-GAGCTGGATTGCTTCGT CGCGGAGCCTGTAGT  57 115
   Rpal_3322 3579294 .. 3579304 -  -4.6  -3.65812   TCGGCCTGAAGACAA                 CAGC AAG GCCG                 AACACGTCAACGCCG  55 71
   Rpal_3321 3578675 .. 3578693 -  -3.7  -3.00298   GGTGGGAACCACACA             GGCCGGC TCAGC GCGGACC             TTGCTTAGCGCGCGT  45 30
   Rpal_3320 NONE
        bioD NONE
   Rpal_3318 3575453 .. 3575484 - -10.9  -3.09492   TGCGGAATCTTAAGA      CGTGGATGCCCGCG ACGAG CGCGGGCATG-ACG      GGTTGAATGCGGTCT  66 59
   Rpal_3313 3569543 .. 3569578 -  -8.9  -3.05384   GGCCTGCCCACTCAA    CTGCCGCTCGGCGGCG CACTC CGC-ACCGAGCTGCTG    CTCGGCGCCCTGGTC  55 416
   Rpal_3311 3568037 .. 3568063 -  -6.4  -4.23674   CCGCATCAAGAGAAA         CCCGCAGCTTTT ACC AACCGCGGCGGG         CCGTCGCAGATCGAC  69 81
         tig 3566315 .. 3566343 - -22.5  -4.09685   CCTGACGGCGCAAAA        CGGCCGCCGTGAC GGT ATCACGGCGGCCG        CAGCGATGATTCTCA 100 52
   Rpal_3309 3565230 .. 3565264 -  -4.8  -3.71848   CCCGTCTATCAAGAA     TTCGCTAATCGGCCGG ACG CCGGCCGACGTGACAA     TAGCGTGATTTGTTG  58 180
        clpX 3563674 .. 3563700 - -11.5   -3.0094   GCTGATGCACAGAGA         CGAGCCGCCAC TCGCG GCGGCAGCCCG         TTCTGATCGTTGCGG  66 77
   Rpal_3307 3560952 .. 3560971 - -16.4  -3.84719   ACGCCGAAACGCAAA            CGGCGCCC CGAA GGGCGCCG             TCGATGTCGATGTAG  95 53
   Rpal_3300 NONE
   Rpal_3299 NONE
   Rpal_3298 NONE
   Rpal_3297 NONE
   Rpal_3296 NONE
   Rpal_3295 NONE
   Rpal_3294 NONE
   Rpal_3293 NONE
   Rpal_3292 NONE
   Rpal_3291 NONE
   Rpal_3290 NONE
   Rpal_3289 NONE
   Rpal_3288 3539321 .. 3539333 -  -3.3  -2.93348   GGCAGGAATACGATA                GCCTG GAT CATGC                GCGCGCCTTCAGCCT  42 83
   Rpal_3287 3537230 .. 3537245 -  -4.6  -3.09834   CAGGTCATGATCGAA              GCCGAC ATTT ACCGGC               CCCCCAAGCCGAGGA  47 18
   Rpal_3286 NONE
   Rpal_3285 NONE
   Rpal_3284 NONE
   Rpal_3283 NONE
   Rpal_3282 3531334 .. 3531351 -  -4.1  -2.91144   CGACGGTGGAAACCA             TCGATCA GGCT TGTTCGA              TCTCGACCAACGCGC  44 12
   Rpal_3281 3530687 .. 3530699 -  -3.3  -3.87815   CCTGACGTTCACAAA                CGAAC GTC GCCCG                GCCAACCAATACAAA  56 379
   Rpal_3280 3530011 .. 3530024 -  -9.5  -3.07043   TCGAGGATGGGAAGA               GCGGC GGAC GCCGC                GGTCAGGCGGAGACT  60 28
   Rpal_3279 NONE
   Rpal_3278 NONE
   Rpal_3277 3527124 .. 3527138 -    -7  -3.96506   GACGCGAAAACACAA               GGGCGG GAG CCGCGC               AACTCGGCAATTCGG  67 115
   Rpal_3276 NONE
   Rpal_3275 NONE
   Rpal_3274 3523629 .. 3523682 -  -6.7  -2.75064   CGGCTGAGGCAATGA TGGCCGGGCCGCAAT-GACCGGCT GAAGCCG AGCCGTCCTATTCCAGCTCGACCA CCACGCCGTCCTGCA  49 9
   Rpal_3271 3522498 .. 3522522 -  -6.3  -2.73364   CCTTCACCGCAAGCA          TCGGCGGGGAT CTT ATCCCCGCTAT          GCCGAAGCGGTCGCA  49 54
        dnaE 3518853 .. 3518871 -  -5.9  -3.67775   ATGGCGATTGAACAA             GCCGCGA CCGGT TCGCGGA             CAAATACCGCCCTCG  57 77
   Rpal_3269 3516071 .. 3516093 -  -2.7  -3.53012   TGGTTCCTCCGGAAA          CGTGTGGGCA ACCG TGCC-AGACG           AGGGACGAATCCGTT  47 207
        rpsB 3515011 .. 3515037 - -23.8  -3.09635   ATTTTGACGACGGAA         CGATGCGGCCGG ATT CCGGCCGCATCG         CCTCGTATTACTCCG 100 33
         tsf 3513949 .. 3513977 -  -5.2  -3.01712   TCGCTCCCTTGAAGA       CTGGCTCCCGGCC CGAA GGCCGGGAGG-AT        TTCGCGTAAACCGCG  47 42
        pyrH 3513181 .. 3513202 - -12.3  -3.34267   AATCTCAAATCAATA           TCGC-CGCGC CCT GCGCGCGCGA           CCGCCTGTTAGCCCG  72 33
         frr 3512510 .. 3512541 - -15.9  -4.07568   GGCCGGGTCCGAAAA      CGACGGCGATCCG TTCGGC CGGATCACCGCCG       GGACGCGACCGGCGA  95 68
   Rpal_3264 NONE
   Rpal_3263 NONE
   Rpal_3262 NONE
   Rpal_3261 3508246 .. 3508262 - -10.9  -2.68823   TCGCTTGTAGACAAT              TTTGCCG CGC CGGCAAA              CGTCCTTTAGCGCTG  63 98
   Rpal_3260 NONE
        lpxD NONE
        fabZ NONE
   Rpal_3257 NONE
   Rpal_3256 NONE
        lpxB 3501144 .. 3501176 -    -7   -3.6796   AATAGATTGCAACAA     CAC-CCTCTTTGCGG CCGG CCGCAATCAGGCGTG      GCGCATCACGTCCAG  59 17
   Rpal_3254 3500315 .. 3500340 - -20.5  -3.23452   AGCTCGATAATCGAA         CGGCGAACCGC TCCA GCGGTTCGCCG          TTCTGCTTTGGGGCC  95 69
   Rpal_3251 3495520 .. 3495550 - -11.9  -3.42346   AACAGTGGAGCAGAA      TGCG-TCCGCCAGC AATC ACCGGCGGAGCGCA       ATCAGGATCAGTGGT  74 44
   Rpal_3250 3492949 .. 3492974 - -16.9   -3.8211   CCTGATCCAGAAGAA         CGACGTCGCCG ACAC CGGCGACATCG          TGGTGGCGCTGATCG  95 261
   Rpal_3247 3490484 .. 3490515 -    -5  -3.82592   ACAAGCGCACAAGAA      CGCTGCAAGCATCCG TTA CTG-CGCCGGCAGCG      CCCGGCAATCCATCG  60 9
   Rpal_3243 3487175 .. 3487187 -  -6.3   -3.4684   CAGAAGACGAACTAA                TAACG CGC CGTTA                ATCATCCCTCGCCGT  57 469
   Rpal_3240 NONE
   Rpal_3239 3485812 .. 3485848 - -13.7  -3.01712   CGCTGTGGCGGAAGA    TGATGCGGCAACCGG GATAACA CCGGCCGCCGCATCG    CGGGATGCGCCTGGC  75 45
   Rpal_3233 3477709 .. 3477737 -    -8  -2.62184   GCGGTGTCTACACGA        TCGCGCGGGGAT TTGTC ACCCCCGCGCCG        CGCCGGAAACGCCGC  51 66
        secG 3477150 .. 3477176 - -16.6   -3.5882   CAGACGATTGCTAAA         GGGACCTCAGGC TAG GCGTGAGGTCCC         GTCAGCGCATATCGG  91 47
        pyrG 3475336 .. 3475364 -  -9.5  -3.93038   CACCGCAAGATCAAA        GCCGCCCAAGC TCTGTCT GTCTGGGCGGC        GTTCGTGCTGTTCGA  74 61
   Rpal_3228 3473691 .. 3473707 -  -9.4  -2.80816   CGCGGATCGACGAGA              CGCTGC GCAAG GCAGCG              AAGCTGAAGACCGGC  57 81
   Rpal_3225 NONE
   Rpal_3224 NONE
   Rpal_3223 3470899 .. 3470917 -  -5.2  -3.74693   GCTGACTGCATTAAA             CGGCCC CGACCGT GGACCG             CTTCTTGGCGAGCGC  58 2
   Rpal_3222 3469635 .. 3469666 -  -7.8  -3.01791   ATTGTCCGGCGAACA      CGCGCAGCTCGCAG TCGG CAGCGAGCCCAGCG       GTTAGAGTGGCAATT  54 27
         eno 3463314 .. 3463342 - -15.3  -3.13432   TTCAAGACGAGGCAA        CGGCCGCGACGAT CAC ATCATCGCGGCCC        AAGGATGCGTTCAGC  83 36
   Rpal_3215 3462061 .. 3462079 -  -3.8  -3.25823   TCCGGTTGAGAGTAA             CTCCTATT TTC AACCGGAG             CCAGCATGTTTCGCA  48 55
   Rpal_3214 3461156 .. 3461187 - -16.7  -3.88703   CTCGACAAACAAAGA      CGTGGATGGCCGGG ACGAG CCCGGCCAT-CACG      AAGGATAGCACCTCC  95 59
   Rpal_3212 3459144 .. 3459156 -  -3.3  -3.93695   GCGATGACGGAGAAA                GCGCA ACA TGCGA                AAGTCGTCCGGCGAT  56 87
   Rpal_3211 NONE
   Rpal_3210 3458048 .. 3458067 -  -3.6  -3.51232   CTGCGCGCAAATCAA            TAT-GCCGC AGT GCAGCGATA            CGAAACTTTCGAAAT  49 71
   Rpal_3209 3456912 .. 3456922 -  -2.4  -3.56568   GAAGCAGCCGCGAAA                 CGGC AAG GCGG                 GGATCAGCGATACAC  49 29
   Rpal_3208 3455347 .. 3455363 -  -5.1  -3.63341   AAGAGCTTTCAAGAA              GTAGCTC AGC GAACCAC              GATCAAGCCTGTATT  55 120
   Rpal_3207 NONE
   Rpal_3206 NONE
   Rpal_3205 3451771 .. 3451790 -   -10  -3.80018   GCGACACAGCAACAA            GAGTGTCC TGGC GGACACCC             TTTTCAGGTGCACTT  74 55
   Rpal_3204 NONE
   Rpal_3203 3449863 .. 3449876 -  -3.1  -3.31792   TGAGGACGTCCACAA               TCC-GG CCG CCTGGA               CCGAGGACGCGCTAT  46 485
   Rpal_3201 3448745 .. 3448757 -  -7.7  -3.44848   CCCTCGGAGTAAACA                CAACC AAG GGTTG                CACAACCGTAACGCA  60 125
   Rpal_3200 3447691 .. 3447705 -    -7  -3.44051   GGCCGATTAGCAGAA               CCGCCG GTT CGGGGG               CTTTACCTTACCAAG  57 55
   Rpal_3199 3446552 .. 3446565 -  -3.1  -3.41073   CACCGCACCGAAAGA               CCACGG CAG CC-TGG               TGTTCTCCGCCCTAC  48 336
   Rpal_3195 3442856 .. 3442883 -  -2.5   -4.4267   TCTGAAAAGGGAAAA        TGGGAGCGGCC GTTTCG GGCCGGTCCGG         GCGCCGCCTAACGCA  65 33
        argS 3440970 .. 3440983 -  -4.5  -3.55444   GTCCCATTCGGGAAA               GCTGCC CAA GGC-GC               CTTCGCAGACGACAC  53 88
   Rpal_3193 3439262 .. 3439298 -    -5  -3.73402   ATACCGGTGATGAAA   GCGCGCGGTGCCATACA TGGC CGCTTAGC-CCGCGCGT    GCCTCCAGGGTCAAG  58 51
   Rpal_3192 NONE
   Rpal_3191 NONE
   Rpal_3190 3436041 .. 3436051 -  -3.2  -3.17492   GAAACAAGGATTTAA                 GCTG TCG CAAC                 GGCGAGTTGATCGCG  44 75
        tatA 3435653 .. 3435674 -  -5.8  -3.14132   CCGTCGCCGGATCAA           GCGGC-CCG GCAGG CGATGCCGC           ACGGGCTCGAAGACG  51 69
   Rpal_3188 NONE
   Rpal_3187 3434177 .. 3434196 -  -4.2  -3.91196   TTCAGAGAGAGGAAA            CAGCCG GGCTTAGG CGGCCG             GTGTCGAGGAGTCGG  58 15
   Rpal_3186 3433682 .. 3433713 -  -6.5  -3.21772   AACGTCTGTAGAAGA      CGGCAATGCCCGGC ACAAG GCCGGGCAC-GACA      ACGGAGACAGGTCAG  53 37
   Rpal_3185 NONE
   Rpal_3184 3431586 .. 3431606 - -10.4   -3.6608   ACGATTCCAGTTAAA            CGTCGCGC GGATA GCACGACG            GCCACACGATCAAGT  70 67
        surE 3428063 .. 3428073 -  -8.2  -5.28176   CGCAGGTAGAAAAAA                 GCGC TTA GCGC                 CATGCCTACGCGTCC 100 201
   Rpal_3181 3427076 .. 3427110 -  -8.4  -3.53012   CGGTGTTCTGTGAAA     GCCGGAGCTATCGACC GGC GGCCGACAGCACCTTC     TCGAGGACATCACCC  63 425
   Rpal_3179 3426189 .. 3426204 -  -2.6  -3.72893   CACCGCGCCAGTAAA              CAAGCGT TTA AC-CTTG              CAAAGAAACCGCTTG  52 73
   Rpal_3178 3424659 .. 3424681 - -16.3  -5.27335   GCGTCCAAACAAAAA           TGCCCGGCC TTTCG GGCCGGGCA           TTTCTTCTTCCCCAG 100 60
   Rpal_3176 3421883 .. 3421903 - -15.5  -2.66964   TGACTTACGATATCA            CGCCGACAT TCA ATGTCGGCG            TCGGCGGCCGCTACT  74 212
   Rpal_3173 3418535 .. 3418547 -  -3.3  -3.89215   CGTCAGAAACCGAAA                GAGGC GGA GCGTC                CAAGCATCAGCTCGA  56 32
        secD NONE
        secF 3415655 .. 3415683 -  -6.5  -2.87132   GCGGCCCCCCACAGA        TTTGCGCCGATCG CAA CGACCGGCGCCTG        CGCGTCAATATGGTG  50 106
   Rpal_3170 NONE
   Rpal_3169 3414229 .. 3414239 -  -3.2  -4.56597   CGCGGCCCGGAAAAA                 TCGG TTG CCAA                 GAAGCAGGCGCTCAG  69 137
   Rpal_3165 3410219 .. 3410257 -  -6.6  -3.74224   CGGAAACCACGCAAA  GGGCGTGAATGGCCGGG ACATAG CCCGGCCA-TCTCGAAC   TCATCGTCAATTGAA  62 194
   Rpal_3160 3407235 .. 3407249 -  -2.1  -2.62018   AAGATCTCAATCAAT              CGTCCA CTCA TGG-CG               CTTTCTCAGCGATTT  38 31
   Rpal_3159 3406070 .. 3406107 -  -9.7  -3.50853   GCTGTTCAAGCAGAA   GCTGTCGCCGGCGCAGC GCGC GCTGCTGCGGCCAAAGC    GGCCATGGTACATCG  64 243
   Rpal_3154 3399211 .. 3399250 - -26.5  -4.07568   TCGCCGGCCCCAAAA  CGACGACGGCCGCCGCG ATGGGG CGCGGCGGCCGTCGTCT   CGTATCCCGTCCCAG 100 81
   Rpal_3150 3395808 .. 3395818 -  -2.4  -3.53012   GTGCGGCCGGTCAAA                 TGCC GGA GGCG                 TATTCGATCCAGCCC  47 10
   Rpal_3149 3394318 .. 3394343 - -11.9  -3.85864   CTACGACTACAAGAA         GCAGCT-CGGCT GCG AGCCGCAGCCGC         TTATGGTTTTGGAGA  79 111
   Rpal_3144 NONE
   Rpal_3143 3390111 .. 3390121 -  -8.2  -3.31461   CACCCACGGCCAGAA                 CGCC CAA GGCG                 ACCGCCACGTCTATG  58 193
   Rpal_3141 3387235 .. 3387246 -  -5.8  -3.21218   ATCGCGCATCATGAA                CCCT CTGC AGGG                 CGAACTGATCAGGTC  51 254
   Rpal_3136 3382567 .. 3382581 -  -3.5  -3.40403   CCGCGCGCATCAGAA               GACAC GTGCT GCGTC               GGTCACCAGGATCTA  49 121
   Rpal_3135 3381226 .. 3381242 -  -3.6  -3.21218   ACTCCTGATCAGTAA              GGGAGC GGAAA GCTCGC              GGCCAGTCGCCGAAC  44 2
   Rpal_3134 3380383 .. 3380425 -  -2.2  -3.16564   GCCGCAGCCCAGCAA CGA-CGAGTAGCCCTGACAGA TTGG TCT-TCAGGA-TCCTCGGTCG ACGCTTGCGTGTGGC  43 10
   Rpal_3127 3372885 .. 3372901 -  -9.4  -3.15579   CGAACTCGCCACGAA              CGCCGT CAAGT ACGGCG              CCTTGTCGACCGACA  59 307
   Rpal_3125 3371630 .. 3371646 -    -3  -2.78816   GGATCTGCGATCAGA              GCTTTC CGAGC AAAAGC              AGGATCAGCAGGATG  40 4
   Rpal_3124 3371012 .. 3371039 - -12.8  -3.42182   ATCAAAAAGGACGAA        TAGCGGGCCATCC AGA GGAC-GCCCGCTA        TTGCGAAACTGCTCG  76 54
   Rpal_3123 3369224 .. 3369277 -    -8  -3.53224   CAGCTCTCCGCCAAA GACGTCTTCGCCGCGCATGCCCGAG ATGAA CTCGGAC-TGAGCGCCCACGTCGTC GCCCGGCCGGTGCAG  60 388
   Rpal_3121 NONE
   Rpal_3120 NONE
   Rpal_3119 3362904 .. 3362949 - -11.1  -3.73534   TAACGTCACTAACAA CCTCGAGATTCCGGGTTCGCGC TTC GCGCGC-CCCGGAATGACGAAA ACCAATTACTCCAAA  76 31
   Rpal_3112 3355238 .. 3355294 -  -5.1  -3.54475   GGCGCCACCACAGAA GTCTCGGCGTC-GCG-CAGCACCCGCTCG AAC CG-GCAGGCGCTGGCGCCGAACCCGCG-C GCGGTATCTTACAAC  54 165
   Rpal_3110 3352604 .. 3352619 -    -6  -3.72576   TTTCGCTCGAGGAAA              GCCGGC GCAA GGCGGC               ACAGACGCGCGAGCA  59 451
   Rpal_3104 3348697 .. 3348717 -  -4.6  -2.70932   CTTCGCTCGCAATGA            CGGGGCAT GGTCG ACGCCGCG            GATCAACGATCCTTC  44 28
   Rpal_3103 NONE
   Rpal_3102 NONE
   Rpal_3101 3345740 .. 3345753 -  -3.1  -3.37915   CGGTAGAAAGCAATA               CGATCG AGC CG-TCG               CTGGCGATCGACAAA  48 283
   Rpal_3099 NONE
   Rpal_3098 3342925 .. 3342940 -  -7.5  -3.09516   CGCGCGAGGATCGAA              CCGCG CTCGGT CGCGG               CGCTGCCGGGCGACT  54 88
   Rpal_3096 3341512 .. 3341540 - -21.7  -4.56978   CGCCGAAACAACAAA        CGCCGCCACCGTG ATC CCCGGTGGCGGCG        CTCCTGTTTTAGATT 100 53
   Rpal_3094 3339659 .. 3339687 - -22.5  -3.04144   GCGGGACTCGCAAGA        GCGGCCCGAAGAC GGC GTCTCCGGGCCGC        GCGTATCAGCAAACT 100 48
   Rpal_3092 3337214 .. 3337234 - -15.4   -4.3851   CACATCAAACAGAAA            CGCCCGGG CGGGC CCCGGGCG            TTGACGGTCGGGTAA 100 59
   Rpal_3090 3333400 .. 3333428 -  -5.1  -4.19974   AAAAGTCGCAAGAAA        CGGTTAGCGGCGA CCG CCGACGCTCAGCG        CTGCTTCGCTAAGGC  65 20
   Rpal_3089 3331683 .. 3331727 - -11.4  -2.57132   CGGCGTTTCCACAAT CTCGGGATTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAATGACG-G TGTGGGGAAAGTGCT  62 54
   Rpal_3086 3329177 .. 3329192 - -11.8  -4.65153   CCACACAAACGAAAA              CCGCCC CGAA GGGCGG               TTTTCCAGCATCGTG 100 96
   Rpal_3082 3324658 .. 3324675 - -12.7  -3.01712   CCCTTCGGTGCAATA             CGCTGCC GGAT GGCAGCG              CCCGCAGCTTGTGGG  71 77
   Rpal_3081 3324371 .. 3324385 -    -7  -3.53012   GGCGTTGTTCTCAAA               GGTCGC GCA GCGCCC               GACTTGATCGCTTTA  57 138
   Rpal_3044 NONE
   Rpal_3043 3295211 .. 3295236 -  -5.5  -4.89477   CTGTCAATAAGAAAA         GTTATCG-CGCA CGA CGCGGCAATAAC         CACGGCCAGGGGGCG  82 69
   Rpal_3042 NONE
   Rpal_3041 NONE
   Rpal_3040 NONE
   Rpal_3039 NONE
   Rpal_3038 NONE
   Rpal_3037 NONE
   Rpal_3036 3293653 .. 3293687 -  -2.7  -3.38314   CCGAACCTGGAAACA    CGGTCGGCATCGTCAGC GCG GCGG-CGAGGCCGTC-G    CAGTCGTGAGCGATC  45 120
   Rpal_3035 NONE
   Rpal_3034 NONE
   Rpal_3033 NONE
   Rpal_3032 3290933 .. 3290958 -  -3.9  -2.71712   CGGCGCGCTGCAAAT         CGTTCGACCTC GATG GAGATAGACCG          TTCGTGCTTGGTCTT  42 155
   Rpal_3031 NONE
   Rpal_3030 NONE
   Rpal_3029 NONE
   Rpal_3028 NONE
   Rpal_3027 NONE
   Rpal_3026 NONE
   Rpal_3025 NONE
   Rpal_3024 NONE
   Rpal_3023 3287099 .. 3287124 -  -9.7  -3.38584   ACATCAGCGAATTAA         GGCT-GGCGCCA ATT TGGCGCCTATCC         GCCATTTGCCAAATC  63 20
   Rpal_3016 3281195 .. 3281214 -  -6.4  -3.61715   GATCTGGGGCAAGAA            CGATCTCG CGCT CGACATCG             CGCTGACCGAAGGCA  56 239
   Rpal_3003 NONE
   Rpal_3002 3269149 .. 3269162 -  -3.8   -3.9122   CATTGCCCGAAAGAA               CGGA TCGTCC TCCG                GCCGGAAGCCGAGAA  58 444
   Rpal_2996 3264679 .. 3264689 -  -4.6  -3.53811   TGGAGCTTGTGGAAA                 CGCA GTG CGCG                 ATGACCTCGGGATTC  55 85
   Rpal_2988 3258602 .. 3258642 - -26.3   -4.0162   GCGCGACATTACAAA  CCCTCCATTGATCCGCCGG AGA CCGGCGAATCGATGGAGGG  TTGAAACAAGCGAGG 100 49
   Rpal_2987 NONE
   Rpal_2986 3256855 .. 3256874 -  -5.8  -3.42459   CATCGAGAACAGCAA            CGAAAC-AC CTG GTCGTTTCG            GGCTGCCGAATGTGG  53 287
   Rpal_2982 3252548 .. 3252573 -  -7.6  -3.06501   CAGATCGTGATGGAA         GGCTTCATCC AGATCA GGATCAAGCC          TTGGCTGCGGCGGAT  53 371
   Rpal_2980 3250631 .. 3250648 -  -4.8  -3.02511   TGCACGCCGGCAAGA             GCGG-GC TGTTT GCGCCGC             TGCTGGAGGCGGTGA  45 413
   Rpal_2976 3245476 .. 3245510 -  -9.8  -3.53444   CTACGTCTCGCCAAA     GTCCGGCAGCGCGGTG TCG CGCAGCGCCGGCGAAC     CGTGGCGCGACCGCC  67 286
   Rpal_2966 NONE
   Rpal_2965 3235443 .. 3235454 -  -7.2  -4.13767   TCGCTGATCTGAAAA                CCGC AGGC GCGG                 ATGCGGTGTTCGGTC  67 410
   Rpal_2958 NONE
   Rpal_2957 NONE
   Rpal_2956 3229155 .. 3229169 -  -8.5  -2.56596   TTCTTGATGAATGGA               GCGCG GACGG CGCGC               TGACCGCGGAGCTGT  52 77
   Rpal_2951 NONE
        rimO 3222563 .. 3222583 -  -8.2  -2.94045   CGAGCTCAACAACCA            CGGCTCGC TGTTC GCGACCCG            ACCGAAGCTGAACGA  54 394
   Rpal_2946 3218571 .. 3218589 -  -5.8  -3.28712   GGCGTTTCTGCAGAA             CGCCGCTG CTC CCGTGGCG             CTGTTCACGCTCGGC  51 365
   Rpal_2944 NONE
   Rpal_2943 3216735 .. 3216753 - -13.1  -3.84719   ATCGCGAAACGCAAA             GGGCGCC CCAGT GGCGCCC             TTTCTGCTTTCTGCA  83 65
   Rpal_2941 NONE
   Rpal_2940 3212282 .. 3212308 -  -9.4  -3.67112   ACGACATTCCAAGAA         CGGCTCCCGC GGTCGAG GCGGAAACCG         TAAGCCGTCGCTGTT  68 39
   Rpal_2939 3210958 .. 3210993 - -14.2  -3.18681   GGCGAAGCCGACGAA    GCAATCCAGAGACT GTGTATGG AGCCTCTGGATTGC     TTTGCCTTCTGCTCG  80 73
   Rpal_2936 3204611 .. 3204631 - -10.3  -2.62184   TCCCGGTCGACATGA            GCGCCGAGG AAG CCGCGACGC            TGATCATGTCGGCTG  57 229
   Rpal_2932 3198835 .. 3198869 -  -2.7  -3.64487   CGAGAGGGCGAACAA    GCTGACGCGGCGTTCG TGAC CGAG-GCCGCCCCAGG     CTTTTAGCGGATGCC  49 29
   Rpal_2931 3198108 .. 3198131 -  -2.3  -3.01712   CGGGCCGCGCGAAGA          CCGGTCGCA TTCGTT TGCGACTTG           GGCGCTCGGGCTGGC  41 313
   Rpal_2929 3195948 .. 3195962 -  -4.2  -2.83403   GTCCGGCGACCAAAC               CCGAGA AAA TCCCGA               CCGTTCCAGCGCGCC  44 47
   Rpal_2928 3192569 .. 3192585 -    -5  -3.57144   CTGCGTATTGCCAAA              GGGCCC TTGGT GCGCCC              ATTCCCAGTCGAATC  55 402
   Rpal_2927 NONE
   Rpal_2926 3191971 .. 3191992 - -15.1  -4.54727   TCCCCCAAACGAAAA           CCGGGCCCC TTTC GGAGCCCGG            TTCGGCAATACAGCT 100 58
   Rpal_2923 3190103 .. 3190124 -  -6.6  -3.17212   GCAGGACCGTATCAA           TGCGGCGCT GCGCA AG-GCCGCA           GGCCTCGACGGCTAG  53 37
   Rpal_2921 3188952 .. 3188987 - -11.8  -2.53911   GCAAGCGCGAAGCGA    GCGCC-CCGGCGGCATC CGT GATGCCACGGGTGGTGC    GGCTCCTGGCTCGAA  65 290
   Rpal_2920 NONE
   Rpal_2919 3186811 .. 3186834 -  -7.4  -3.89822   CATCGAGCGTAGAAA          CGCACTGC TCACAAAG GCAGCGCG           CGCTCCACAAGCTTG  68 10
   Rpal_2918 NONE
   Rpal_2917 3184010 .. 3184038 -  -2.4  -2.70932   CGGGCTGCGGAAGTA       GCGTTTGA-GCGT ATCC ACGCGTCAAGCCC        CCGCCGAGATGCGCG  39 18
   Rpal_2916 NONE
   Rpal_2915 3181377 .. 3181392 -    -6  -3.14132   GTCTTCGTCGACGAA              GGCGGG CTGT CACGCC               TCTTCGACCATCAGC  51 211
   Rpal_2913 NONE
   Rpal_2912 3178091 .. 3178104 -  -2.3  -3.73647   CGCACTCATGAAGAA               GCCAC CTCC GCGAC                TGGCAGTCGCTTCAG  52 2
   Rpal_2911 3177577 .. 3177603 -  -6.4  -3.62046   CGAGGCGCGGAAGAA         CCTCTTCGGCCG CGC CGGCCGATTACG         TCTTTGCGACGGCTT  59 21
   Rpal_2897 3160371 .. 3160407 -  -2.9  -2.81272   GACGACGATCGAAAT   CGTCGCCCGAT-GGAG CCGCAT CTCCGAACGGGTCACG    GTCTAAAGGACGGTG  40 118
   Rpal_2896 3159021 .. 3159038 -    -4  -2.62735   AGAGTCTCCAGATCA             GCCGGC CCGGTC GCCCGC              AGCGGGAGCCGCTTC  41 39
   Rpal_2895 NONE
   Rpal_2894 NONE
   Rpal_2893 NONE
   Rpal_2892 3155250 .. 3155266 -  -4.3  -2.79302   AGCATGTCGACTATA              CGCGATG CAG CGTCACG              GACACCTTCGGGCCG  42 4
   Rpal_2891 3154451 .. 3154465 -  -2.1  -3.64822   ATCTGGCGACCGAAA              CGG-AC CGCC GTGCCG               TGATCGACGGCTTGC  51 447
   Rpal_2889 3151439 .. 3151450 -  -5.8  -3.35679   CGTTGTCACCGACAA                TCCG CCTG CGGA                 GCATCGCAGCACGCT  53 449
   Rpal_2884 NONE
   Rpal_2883 NONE
   Rpal_2882 NONE
   Rpal_2881 NONE
   Rpal_2880 NONE
   Rpal_2879 3140951 .. 3140985 - -24.4  -3.31726   GCTCTCGATACAAGA     CGTCCGGCATTGCACG AGC CGTGCGATGCCGGACG     AGGTGGTCCAACGGG 100 52
   Rpal_2878 NONE
   Rpal_2877 3139695 .. 3139725 - -13.9  -2.62263   ATCTTCTGCAGATCA       GCCCGGAGCCGGC CAAGT GCCGGCTCCTTGC       CGTTGAGCCACAGAT  71 125
   Rpal_2870 3133691 .. 3133717 - -15.2  -3.81339   CAGCCAGAATCGAAA         GACCCCCGAG GGGGCAA CTCGGGGGTC         TTCGGTACAGAGCGC  90 92
   Rpal_2860 NONE
   Rpal_2859 3118155 .. 3118186 - -14.6  -3.18582   GAGCGCAGCGACGAA      GCAATCCAGCTC GATGCACG GAGCTGGATTGC       TTCGCTTCCCTCGCA  80 233
   Rpal_2856 3115777 .. 3115789 -  -4.7  -3.02043   AAGCGCTCTGGAATA                CTGGG TCG CCCGG                TCAAGCCGGGCGATG  47 101
   Rpal_2849 3107157 .. 3107178 - -15.1  -5.14563   CTGCCCATGAAAAAA           GCCGCCCCA GATG CGGGGCGGC            TCAATTCAACGACAT 100 62
   Rpal_2848 3106494 .. 3106507 -  -6.7  -3.65351   TGACGCGGAGGGAAA               CGACA CGGC TGTCG                GAGCTGCCGGCCGAT  61 361
   Rpal_2840 NONE
   Rpal_2839 NONE
   Rpal_2838 3090016 .. 3090059 -  -3.2  -3.54951   GACGGCACGAGACAA GGCACGCCTT-CTGCCGCAT GAGCGA ACGCGGCAGCAAGAC-CGCA ACAGGATCAGCCCGC  51 32
   Rpal_2837 3088776 .. 3088813 -  -9.9  -2.66787   TGAACACGGACATGA   GCCGACGCGCTCCTTG TTTTGCG CAAGGATCG-GCCGGC   GCCATGAAGTTTCAG  59 131
   Rpal_2836 3088340 .. 3088352 -  -4.7  -3.76224   TGGTGACGCACGAAA                TGGGC TTC GCCCG                CGAGGTTGCCGATCG  58 177
   Rpal_2831 3082187 .. 3082206 -  -4.2  -3.65046   TCGGGAGTGCAAGAA            CGCAAG-GC TTG GCACGTGCG            TTGATAGAAAAGGGG  54 235
   Rpal_2820 3065234 .. 3065247 -  -3.7  -2.78384   CCGTGGTGCAGCAGA               CCGGC GGCA GCCTG                GAGGCCGCGACCTTC  41 323
   Rpal_2817 3063652 .. 3063681 -  -7.7  -3.33696   CTCGGCCTCAAGTAA       GGCCCATGACGCG ATGG CCCGGCACGAGCC        GGGCCGTCGTTGCCG  58 44
   Rpal_2813 NONE
   Rpal_2812 NONE
   Rpal_2811 3055593 .. 3055610 - -11.3  -2.62184   CGCTCGGCGATACCA             TCGGGGT CGGC ACCCCGA              AGAAAGTCCGCGAGC  59 481
   Rpal_2806 3049258 .. 3049277 -  -8.5  -3.36878   GTCATGGAGCGAGAA            CGGCGCC CGCTAT GGCGCCA             GCCACGATCTCTATT  60 36
   Rpal_2799 3042905 .. 3042933 - -13.2  -4.42386   CGCCGAGGCAGAAAA        GAAAGGCTTCGC TGCTC GCGGAGCCTTTC        TTGTGATTGACGATG 100 266
   Rpal_2796 3039659 .. 3039695 - -17.4  -2.54723   CCGCAAGATCAAGAG   CATCTGCCGCGGCT-GC TGAC GCGAACCGCGGCAGACG    TCGCGCGATTAGCTG  83 34
   Rpal_2792 3036359 .. 3036379 - -15.4  -4.72986   CATGCCCACGAAAAA            GCCCGCCG GGATG CGGCGGGC            TTTGCGGGAGTCAGC 100 55
   Rpal_2790 3033887 .. 3033917 -  -2.5  -4.21194   TCGCATCATCGAAAA       GCCTGCGGC CTCTATCCACCCT GCCGCAGTC       GCGCCAGCACCTTCA  59 6
   Rpal_2789 3032717 .. 3032751 -  -4.3  -3.27617   GAAGAAACGGAGGAA    GGGTATTATTCCACGGC TCG GCCGGGGCA-AA-ACCC    TGACTTTCGGTCAAT  48 36
   Rpal_2788 3032358 .. 3032388 -  -2.4  -3.64599   TGACGATAGGTGAAA       GTGGATCCGTTCGA GTA TCGAACGAGCTCTC       AGGTGCAAATCTCGC  49 24
   Rpal_2780 3022522 .. 3022567 - -14.6  -3.33696   GCGCTGGCGAACTAA CTTGAGCGACGTGCGGCTGC TGCTTC GCCGCCGCGCGTCGTTCAGG ATCGCACTTTGACGT  82 21
   Rpal_2775 3017266 .. 3017283 -  -2.6  -3.90922   AGCTCTCCGAAACAA             TCGTCC GCTCCA GGACGT              CACCCTGACGTAGCT  54 197
   Rpal_2774 3016207 .. 3016256 -  -9.9  -3.25823   CGCCGCGCAGAGCAA CTTCGAGATTCCGGGTTCGCTCAC TTC GTGAGCGC-CCCGGAATGACGGCG CGGCGACGCTTTCGG  66 476
   Rpal_2768 3010507 .. 3010539 -  -9.8  -3.71913   GCCACATCGAAAAGA     CCGCCGACGGCTACC GCAT GGT-GCCGTCGCCGT      GGAATCCGGTGATCT  74 188
   Rpal_2765 3006199 .. 3006223 -  -8.6  -3.53012   CTGGCGGCGCGGAAA         CTCAGCGCCAA CCGG CTGGCGCTG-G          ACATCGGCGTTCCGT  62 244
   Rpal_2762 3005094 .. 3005123 - -14.5  -2.78384   GCGCGTGCGAGCAGA       TTGCTGCAGC-ATC GAT GATTGCTGCAGCAA       AGAGTTCGTCATTGC  75 131
   Rpal_2761 3004570 .. 3004588 -  -5.9  -3.56092   TCAGCATGCGCCAAA             TCGCCGA GACGA TCGGCGC             AGGTCTCGGCGTTCC  56 258
   Rpal_2759 3002747 .. 3002761 -  -7.8  -3.36837   ACAAGGTGCTAAAGA               TGCCGC CCT GCGACA               TGCGCGATCCGATCG  59 211
   Rpal_2756 2998146 .. 2998157 -  -5.8  -3.27704   ATCGGCCAAAGTCAA                TGCG CCGG CGCA                 TGAAACGGCTGAAAT  52 44
   Rpal_2755 NONE
   Rpal_2754 2995288 .. 2995304 - -13.7  -3.10715   GGCAGCAGCAGCGAA              GCGCAGC CGG GCTGCGC              GCTGACGCCGACGTC  75 39
   Rpal_2740 2980817 .. 2980827 -  -4.6  -4.13945   AGGCTGATCCGAAAA                 CCGA AGA CCGG                 TTTTCGGATCAGAGG  65 54
   Rpal_2738 2978259 .. 2978274 -  -3.2  -3.53012   CGGTTTTGCCGGAAA              GGAGCAG GGC CCGC-CC              GCGAATGGGGCTATG  49 36
   Rpal_2737 2976798 .. 2976820 -  -6.1  -4.62069   GCGGCACGTCAAAAA           CCGCCGCGC GAGCA GCCCGCCGG           ATGATGCCCGGCAGA  76 188
   Rpal_2736 2976024 .. 2976045 - -15.1  -4.30995   CGGCCGACAAAATAA           CGGCGCCGA TTTC CCGGCGCCG            CCCAACTAATCAGAT 100 182
   Rpal_2734 2971428 .. 2971443 -  -4.6  -2.54344   GAAAACTATCAAGAT              TGCGCG GCAG CGAGCA               CCTGATCGGCGTGGC  43 3
   Rpal_2733 2969873 .. 2969887 -  -7.8  -3.53012   CCTTCGCGGTGCAAA               CGCTGA TCG CCAGCG               CGCTGCAGATTATCG  60 93
   Rpal_2728 2959734 .. 2959764 - -14.1  -4.56597   TCGGCGGCTGAAAAA       GAAAATGCCCGCG GCGTG CGCGGGCATTTTG       GAGGCTGTTGTCTTG 100 49
   Rpal_2727 2958418 .. 2958445 -  -4.8  -3.14132   TCGCGCCCTCACCAA        CATCACCGGCAAC GGC GTCGCCG-CGGTG        TTCGTGTCGTGGTGG  47 235
   Rpal_2723 2953634 .. 2953644 -  -6.8  -3.29829   CAGAGCTGCGGACAA                 CGGA CAA TCCG                 CCGCAGCGCGACAAT  55 54
   Rpal_2722 2953024 .. 2953062 - -24.8  -4.60889   AAGCATCTGCAAAAA   GCATCGAGCGGTGCATGA TGG TCATGCACCGCTCGATGA   ATGTTGTGTCTCGGT 100 60
   Rpal_2721 2952202 .. 2952238 - -25.2  -3.05384   GCCGGTGCGACGCAA    CGACGCCGGCGCCCGG GAGAA CCGAACGCCGGCGTCG    TCAGATCGCGTGCCG 100 43
   Rpal_2720 2950891 .. 2950903 -  -6.9   -3.0395   AGAGATTTCTCAACA                CCGGC GTT GCCGA                CTTCCCCCATATCGA  51 420
   Rpal_2716 2948050 .. 2948075 - -14.7  -2.57192   ACCTAACGGAATGCA         CAGGGGACGGC CGTA ACCGCCCCCTG          TATCCGAGTGCCTTG  74 42
   Rpal_2715 2947336 .. 2947352 -  -3.5  -3.05596   GATGTCTTGAGTGAA              CGGGCGG GCT CAGGCCG              TGGCGCTGGCGCCGA  43 18
   Rpal_2714 2946760 .. 2946798 -  -5.2  -2.93991   TGGAATGGAACGAGA  GGCAGCTAAGCGGCTTG TTTCTG CTCGCTGCTT-GCTGCC   CGCCACTCGCTTGTT  46 39
   Rpal_2713 2945298 .. 2945324 - -10.8  -2.70932   GTCGCGGCCGAAGGA         GCGAGCTCGCGT CGA AAGCGAACCCGC         TGCAACGCGTTAGGC  63 43
   Rpal_2712 NONE
   Rpal_2711 NONE
   Rpal_2710 2941967 .. 2941978 -  -2.2   -2.9302   GGGAAGCACAACAAT                CG-CC TTT GGTCG                CTAAGAGGTCGCCGG  40 140
   Rpal_2709 2941106 .. 2941121 -    -9  -3.32993   CCACCGAGATACGAA              CGGCAA CATA TTGCCG               CTGAGGGCGTGAACG  63 193
   Rpal_2708 2939796 .. 2939806 -  -4.6  -3.58522   AGCACGACGGCGAAA                 GGGC GCG ACCC                 TGTGGGCGATGGCGG  55 48
         aat 2939032 .. 2939046 -  -2.1  -2.84276   ACGGTCAAGCAATGA              CCG-TC ATGC GAGCGG               CGCGTGTGCGCGTCT  40 71
   Rpal_2706 2938604 .. 2938614 -  -2.4  -4.13767   CTTCGCACTGGAAAA                 TGGC TGC GCCT                 CTGGTGGAGGTGCCT  59 59
   Rpal_2705 2937045 .. 2937079 -  -6.3  -3.73953   AGCAGTCGCAGCAAA    CG-CTGCCGCCGCCGT CATC ACTGCAGCAGCCGGCG     CCGCAGCCCCAGCGC  59 286
   Rpal_2703 2934972 .. 2934989 -  -2.6  -3.53012   CGGCCTGCGGCTAAA             GCGCCT TCAGCC AGTCGC              CGATCTCGCGCACCG  47 3
   Rpal_2702 2933311 .. 2933325 -  -3.4  -3.72576   CGTTCCGCGATGAAA               CCGGCA CCA CGCCGT               CGAAGGCGGTTGAGC  53 226
   Rpal_2700 2931487 .. 2931497 -  -8.2  -3.28712   CTGGGTGCTGTACAA                 CGGC TAT GCCG                 AGCCGAGCCGGGTCC  58 284
   Rpal_2698 2930379 .. 2930400 - -14.4  -5.07652   GCGTGCAAAACAAAA           GCGGCGCC GGTGAG GGCGCCGC            TCGCGAAACAACCAA 100 54
   Rpal_2697 2927682 .. 2927703 - -18.7  -3.18681   CGCGAATCTGACGAA           CCCCGGCGG GCAA CCGCCGGGG            TTTTTCGTTGTCTCC  93 273
   Rpal_2695 2924363 .. 2924384 -  -2.3  -3.05384   CCCCCGCGCAGTCAA           TTGCATCTC CGCC GAAATTCAA            CCAAGGTTCCTGCCG  41 43
   Rpal_2694 2922184 .. 2922198 -  -3.5   -3.6715   CCACTCAATGTGAAA               CGACC AACAA GATCG               GCTGGCACTTCATCG  51 438
   Rpal_2689 2918183 .. 2918219 - -19.3  -2.86343   AGCTCAAGGACGACA    TCGCCGTGGAGGCGCCG TAT CCGCGCCACCGCGGCGA    TCCATACTTGGCCGA  95 247
   Rpal_2682 NONE
   Rpal_2681 NONE
   Rpal_2680 NONE
   Rpal_2679 2907379 .. 2907411 -  -6.7  -3.86015   GAGGGGGCTGACAAA      CTGCGGGCCGGGCGG AAG CCGACCGGCGAACCG      TCTCACAACTCCTGC  65 28
   Rpal_2678 2906665 .. 2906677 -  -4.7  -2.58544   CGGGATTTTTATAAT                CCGGC GGG GCTGG                TTGGTTTGGCGTGGG  43 477
   Rpal_2675 2904298 .. 2904334 -  -6.3  -3.07935   ATTTGATCCAGCGAA    CGCGCGAGCGGGTCAGC GAT GCTCACCCGCATGTGCC    GGTGCGTTGCGCGGG  51 1
   Rpal_2674 2903598 .. 2903617 -  -3.5  -3.53012   CCGCTGGTGGTGAAA            CCGATCG AGGCGG CGATCGC             CAGTGTCTCCCGCAG  51 374
   Rpal_2671 2900997 .. 2901007 -  -2.4  -3.78778   GGAGCAGATCAAGAA                 CGGG AAT CCTG                 ATCTCTACAACACCG  54 490
   Rpal_2660 2890214 .. 2890227 -  -3.7  -4.16842   CGGAGGTTGAACAAA               GGCCG CGAT CGGAC                CGAAACAACTACACC  63 124
   Rpal_2659 2889858 .. 2889892 - -14.3  -3.53563   AGAGGTTGTCGCAAA     TGGGAAAGGCCCCGC ATGCG GCGGAGCCTCTCTCA     CGAACACATCGAATT  83 92
   Rpal_2644 NONE
   Rpal_2643 2866749 .. 2866765 -  -5.7   -3.3782   TACGCATGGAAGCAA              GCGACCC ACC GGGACAC              CCCGCCCAGGGACGT  52 259
   Rpal_2642 NONE
   Rpal_2641 NONE
   Rpal_2640 2863465 .. 2863481 -  -2.2  -3.05819   CAGACATTCCCAAGA              CCCC GTGGATGTT GGGG              CAGGGACCTGGCGGA  41 320
   Rpal_2639 NONE
   Rpal_2638 2859157 .. 2859178 -  -2.9  -2.57463   AATCCCCGCCAGAAT           TGGAATTGC AGCC GCCATGCCA            GCGCGCGCCAACGCC  39 237
   Rpal_2637 2858038 .. 2858052 - -11.4   -3.4439   CAGATGAACTGACAA               CGAGGC TTA GCCTCG               CGGCAAGGTGACACG  71 490
   Rpal_2636 NONE
   Rpal_2635 NONE
   Rpal_2634 2853064 .. 2853090 -  -3.5  -4.13246   GACGTGATACACAAA         CGCGGCCAACG CACGT CGCCGGATGCG         CCCCGCGCGCAATTC  61 42
   Rpal_2632 NONE
   Rpal_2631 NONE
   Rpal_2630 NONE
   Rpal_2629 NONE
   Rpal_2628 NONE
   Rpal_2627 NONE
   Rpal_2626 NONE
   Rpal_2625 NONE
   Rpal_2624 2841510 .. 2841560 -  -3.1  -3.54424   CGCCATCTTTCGAAA CGCGCACGG-GCCCAATCGAAGTC GCGC GGCTTCGATGCGCCGCCGTGGGTG CGTTCTTGCACTGAT  51 76
   Rpal_2623 NONE
   Rpal_2622 2838177 .. 2838193 -    -8  -2.61264   GGGGCCAGCTAGAAG              GTCAGC TTGGC GCTGAC              GAGGTAAGAGCGGCC  51 2
   Rpal_2621 NONE
   Rpal_2620 2835116 .. 2835143 - -18.4  -3.15663   ATCTATTGTGACGAA        TGGCGCTGGCGG GATA CCGCCTGCGCCA         TTCCGTTTTGCGTGG  91 78
   Rpal_2619 2834748 .. 2834762 -  -4.2  -3.15574   TTAAGTCGACCAACA               CGCGAT TCT ATCGTG               GTCGATAGATAGTCC  47 42
   Rpal_2613 2825343 .. 2825379 -  -9.4  -3.03124   GTCCATCGTCCAACA   GGGGCGTTCCGATCAAG ACGG CTTG-CCGGATCGGCCC    CGGCTCGCGGTGCGC  60 46
   Rpal_2612 NONE
   Rpal_2611 2823157 .. 2823175 -  -5.3  -3.61398   CTCGCTGGCGAAGAA            GGCGGCAT TCTC ATGC-GCC             GCTTGATAGCGGCCG  54 390
   Rpal_2609 2821718 .. 2821730 -  -7.7  -2.55213   GATCGAGCGAACCTA                CACCA CGG TGGTG                CGCGCCAGCACCATG  51 63
   Rpal_2602 2813208 .. 2813227 -  -2.8  -3.08996   GATCGGTATCGAAGA            CGTCGA GGACCTGA CCGACG             ATCTCGAGCAGGCGC  44 156
   Rpal_2599 NONE
   Rpal_2598 NONE
   Rpal_2597 NONE
   Rpal_2596 2807373 .. 2807402 -  -4.3  -4.30719   TGGGTGGAGAACAAA       TCGCTCGCGGAG TGGCGTT CTCTG-GAGCGA       TCGTTCTTGCCGGGC  66 80
   Rpal_2595 2806379 .. 2806434 -  -4.7  -3.05384   TCGCTGGCGATCCAA CCGTCGGCCACCA-CTCATTCGCAGCTC AGT GAGCAG-G-ATCAGCTGGCGGCCGGCGT CACGCCGGGGTTCAT  45 278
   Rpal_2593 2803603 .. 2803638 -  -3.4  -3.60792   TTCGCAAGCGCGAAA    GCGC-GCTAGTTC GCGATTTGAAA GAACTAACTGCGC    TGTCGTGCGTGTGGA  51 123
   Rpal_2592 NONE
   Rpal_2591 NONE
   Rpal_2590 2799171 .. 2799187 - -11.5  -3.61268   GACCGAATGGGCAAA              GCGGCAC CAC GCGCCGC              GTCGCTGACAGTCGT  73 203
   Rpal_2589 NONE
   Rpal_2588 2797040 .. 2797052 -  -7.7  -3.62224   AGAGTGGTCGAAGAA                TTCGC GGT GCGAA                CTTGCGTTCATCGCG  60 462
   Rpal_2586 2795019 .. 2795051 - -14.1  -3.15427   AAGATGCGGGAGCAA      TGAGCGTTCCGACTC GGC GCGCCGGAACGCTCT      TCCACTTATCCGAGT  76 31
   Rpal_2585 NONE
   Rpal_2584 2791843 .. 2791863 -  -9.7  -2.82516   CTCGCCAGCACGACA            CGCGAGC ACGAATG GCTCGCG            TTTCGATATCACCGA  57 45
   Rpal_2582 NONE
   Rpal_2581 2789935 .. 2789953 -  -8.1  -3.60151   CCTTCCAAACTATAA            GC-CGGCC AGCA GGCCGTGC             AGATCATTGCGCAGC  65 1
   Rpal_2580 NONE
   Rpal_2579 NONE
   Rpal_2578 NONE
   Rpal_2577 2786438 .. 2786454 -  -6.5  -3.53444   GCAGCGCCCTGGAAA              TCCTGCG CGG CGCAGCA              TCAGTTGCCGAAGCG  56 407
   Rpal_2564 NONE
   Rpal_2563 2768845 .. 2768857 -  -3.3  -3.28001   GATGGGGAAATCGAA                CGTTC GGA GAGCG                TCGTCTGATCATCGC  46 57
   Rpal_2562 2767771 .. 2767807 - -11.5  -2.70932   GCCGTCGCCGAAGCA    TGCGGCTGCAGCGGA TTTGACG TCCGCCGCAGCCGGC    TCAGAGACATCTCAA  63 37
   Rpal_2561 NONE
   Rpal_2560 NONE
   Rpal_2559 2764665 .. 2764675 -  -8.2  -2.57132   TTTCTCGGCCACAAT                 CCGC TCG GCGG                 GTGGATGGTGGTGGC  52 445
   Rpal_2556 NONE
   Rpal_2555 NONE
   Rpal_2554 2761521 .. 2761536 -  -5.4  -3.09933   GGCGAACGCATCGAA              GCGACCG TGC CGGT-GC              ACCGGCTGACGGGCG  49 62
   Rpal_2550 2755761 .. 2755773 -  -9.1  -3.13403   CGCCGGTCACCAAGA                GCGAG GAT CTCGC                CGAACTCTGGGGCAC  59 233
   Rpal_2544 2748900 .. 2748911 -  -3.6  -3.25823   CCGGTCGCAGATCAA                GCGC ATCT ACGC                 CAAGCTCGGCGTCTC  47 108
   Rpal_2536 2740263 .. 2740273 -  -6.8  -4.07647   ATACCCTAAAGCAAA                 TCCG GAG CGGA                 TTGAATCGCATCAGC  67 168
   Rpal_2535 2738779 .. 2738803 -  -6.3  -2.78384   CGGTGCTGGACCACA          CCGGCGGTTAG CAT CGAAACGCCGA          CTACTCCGCCGCGGG  49 26
   Rpal_2531 NONE
   Rpal_2530 NONE
   Rpal_2529 2729921 .. 2729934 -  -3.7  -3.55548   GAACAGCTTCTCAAA               GCGGC GATG GCCGT                GTTCGCGGCGAAGCT  51 414
   Rpal_2526 2723929 .. 2723960 -  -8.1  -3.06183   GCGATTTCGACGCAA      TGAGGC-CGGCT TTTGCGACG AGCCGAGCCTCA      GCCCACCAGCTTCAG  57 23
   Rpal_2525 NONE
   Rpal_2524 2722990 .. 2723002 -  -4.7  -3.53012   GCTTCTGCGCCGAAA                CCGGC GGT GCCGC                CACGCTGTTCATGGC  52 263
   Rpal_2521 2718292 .. 2718331 - -17.2  -4.37092   AGCGTTGTCAGAAAA  CA-AGAACCGCCGCGTGGC TGA GCCGCGCGGCGGTTTTCTG  TTTTGGTAGGTCTGA 100 52
   Rpal_2513 2711777 .. 2711792 -  -3.2  -2.85668   TAGGTTGATACCAGA              GGTGAG TGCG CTCAGC               CCCAGCTGCGCAGTC  42 21
   Rpal_2512 NONE
   Rpal_2511 2708431 .. 2708451 - -10.4  -3.30124   GCTGACTGCGGAGAA           GGCGACGGC GGTC GCCG-CGCC            GCTGATCGCCGAGTG  63 287
   Rpal_2507 NONE
   Rpal_2506 NONE
   Rpal_2505 2704685 .. 2704717 -  -5.5  -3.28712   GCGGGCGCGGGACAA      CGCCATGTGCTCG TAGCCGG CAAACCCACGGCG      GTTCACGCTCGGCTC  52 39
   Rpal_2504 2703201 .. 2703216 -    -4  -3.19889   CAGCAAGATATTGAA              GTGCGTT AGC AACGC-C              AGAGATCGCCCCCTT  47 166
   Rpal_2503 2702492 .. 2702505 -  -2.3  -3.76125   CTAGTCTAAGCCAAA               CGTCG TGCC CGAAG                TAGTGTATAAGAGGC  52 220
   Rpal_2502 2701205 .. 2701220 -  -2.6   -3.2794   CCGTATCTAGACTAA              TCGTATC TCC GAT-CGA              AACAGCTCGCCGATC  45 1
   Rpal_2501 2699412 .. 2699424 -  -4.7  -2.82015   TGTATATCGACCAGA                TCCGC AAG GCGGG                CCTGTACGATGTCAT  44 313
   Rpal_2493 2689132 .. 2689158 -  -6.4  -3.05844   GGCCGTACGTCAAGA         CGATGGCGCCCA GTC CGGGGGCGACCG         TTTCGGCTGAGCGCC  51 52
   Rpal_2490 2687327 .. 2687337 -  -8.2  -3.01791   AGCTCTGGTCGAAGA                 CGCC GCT GGCG                 GCTCAGACGGTGGTG  57 28
   Rpal_2488 2683438 .. 2683471 - -11.7  -3.21924   GTACTCCGCACAACA     GACGTCGTCGCCGGGC TCG ACCCGGCGACC-CATC     TTCTTCGTAGAATGA  70 183
   Rpal_2485 NONE
   Rpal_2484 2678702 .. 2678718 -  -4.4  -4.13648   AAGTGTAGATATAAA             CTCAGGC ACGC GCC-GAG              TCAATCCGCTCAGTC  63 85
   Rpal_2483 NONE
   Rpal_2482 2677345 .. 2677361 -  -7.2  -4.08767   CGTATTTGCGCAAAA              CGGCGG GGTTG CCACCG              GCCGGCATCGGCCTG  67 359
   Rpal_2475 2670703 .. 2670718 -    -6  -3.41878   GCCCGGAATCCATAA              CCCCTG TGCG CGGGGG               ACATCACCCGCGGCT  55 154
   Rpal_2471 2666498 .. 2666539 - -12.4  -2.53876   CGCGAGCGCAAGCGA GCGCGGAATCCATAACTCC TGCCG GGAGG-ATGGATTCCGGGC CCAGCCCCGCTGGGG  65 81
   Rpal_2470 NONE
   Rpal_2469 2664482 .. 2664522 - -28.7  -2.62184   GGCTGCGGGACACTA  GAGCATTTCCGGTTCTGAT AGA ATCAGAACCGGAAATGCTC  CAGTTGTTTGTCTTG 100 130
   Rpal_2468 NONE
   Rpal_2467 NONE
   Rpal_2466 2662075 .. 2662128 -  -2.9  -3.53444   GCACGCTGCCGGAAA GCGACGGCTGGAAGGACGTCATCG CCAAGTC CGAGGCCGACCT-CGAGGCGGCGC AGCAGGGGCGGATGA  49 254
   Rpal_2464 2660544 .. 2660558 -  -5.6  -3.51329   CATGGCCAATGACAA               CGCAGC AGC GCCGCA               TCCGGCTGCGGGCGA  54 502
   Rpal_2461 2657764 .. 2657774 -  -2.4  -3.58269   GAAGGGAGCGGCAAA                 TCGG TCT CCGG                 AGTTGTCGTCGGAGC  49 260
   Rpal_2460 2655948 .. 2655995 -  -6.3  -3.25015   CTGAACCAGTAGCAA TCGCTCTGTCGCGCGATTCGAT TGAAG ATCGA-TCGCGTGACGGAGACA CGCCGATGACCAAGC  53 107
       groES 2654852 .. 2654868 -  -9.3  -3.03124   GCTCACCCTTCAAGA              TGCCGGC TGC GCCGGCG              CCTCTGGGTGAGGGC  60 52
       groEL 2653043 .. 2653062 - -16.4   -5.4505   TGCGCCAACAAAAAA            GCCCGGCG TTTC CGCCGGGC             TTCGTTGTCTGTGGC 100 55
   Rpal_2456 2652020 .. 2652053 - -12.4  -2.59564   TTCTGAGCCGACAAC     GCGGCTGCCGGATCA GCGAT CG-TCCGGCGGCCGC     CGCACCGTGGTGCTT  65 40
   Rpal_2453 2647342 .. 2647363 - -17.3  -2.71712   CGTGCGGCGGGAAAG           GCTCCGGCG CCGC CGCCGGAGC            TTTGAGCGCAGCCGC  84 43
   Rpal_2452 2646865 .. 2646884 - -13.6  -3.12668   TCCGAAATGCGAAGA            GGGCGGAT GGAG ATCCGCCC             TCTGATGTTGTGGCG  76 82
   Rpal_2449 2643958 .. 2644006 -  -8.6  -3.44848   TGCGCTGATCAAACA CGCCGCCGCATCGCCCGGCCTGC TACA GCACACCGGCCGG-GCGGTGGTG TTCGAAACCCTGGAG  60 513
   Rpal_2440 2632675 .. 2632719 -  -8.5  -3.20382   CGCCAGATGGACGAA CGCC-CGG-GCTGGCGTCGGC TCTAT GCCGACGACATCGCCGTGGTG CATGTACGCAATTAG  58 136
   Rpal_2427 NONE
   Rpal_2422 2609417 .. 2609427 -  -2.4  -2.72511   GTGACGCTTCGAAAC                 GCGG TGC CTGC                 CGAAACGTTCCTAAA  39 76
   Rpal_2421 2608791 .. 2608849 -  -5.7  -4.50976   GCCCAGACCACAAAA CTACCGCCGCGGCTCGCGCGAACTA TGCATGTAG TTGCGCGCACGGGGCTCGGCGGGAG TCGAGCCTCCGATGA  74 266
   Rpal_2412 NONE
   Rpal_2411 NONE
   Rpal_2410 NONE
        hmuV 2597331 .. 2597348 -  -9.1  -4.09739   TGAACCGGTCCAAAA             CCG-CCCG CGT CGGGACGG             CTGTTACTTAGAATG  76 76
   Rpal_2408 NONE
   Rpal_2407 2596267 .. 2596311 - -12.8  -2.81464   CTATCACGTATCAGA TCGGCCGTGGCGTC-GCTCCC GTCG AGGAGATGTCGCCACGGCCTA TCGCGATCAGTGGAT  68 32
   Rpal_2402 2590152 .. 2590172 -  -3.3  -3.14132   TTGCCTGCGGATTAA           GCGATCAG GCGCAT CTG-TCGC            GTATCTTCCGCCGCT  44 178
   Rpal_2400 NONE
   Rpal_2399 2588336 .. 2588354 - -11.7  -2.90075   GGCCCGCCAATCAGA             TCCGGCC ATTAG GGCCGGA             TGCCAGCGCGCGCTG  67 2
   Rpal_2398 2583143 .. 2583155 -  -4.8  -2.78596   GATGTTCGGATGATA                GACG TGCGC CGTC                GTCCGGCGGGCTCGG  44 76
   Rpal_2397 NONE
   Rpal_2396 2581222 .. 2581264 - -12.5  -4.21462   AGGCATCAGGCAAAA CGCGACGGCCCGGCGCGAC GATCT GTCGGGCCGGGCCGCTGTT TGGATACTGCGGAGT  89 42
   Rpal_2389 2573487 .. 2573498 -  -5.8  -3.53224   GAGCGCGCCGCGAAA                CTCG CCGA CGAG                 ACTGCGGGGCTATTG  54 120
   Rpal_2383 NONE
   Rpal_2382 2565432 .. 2565442 -  -8.2  -3.15544   CTTGATCGGGATCAA                 GGCG TAT CGCC                 AGCGGCCTCCGGGGC  58 11
   Rpal_2381 NONE
        cobH NONE
   Rpal_2379 NONE
   Rpal_2378 2562220 .. 2562242 - -10.4  -3.61398   CGTCGTTGCCAAGAA           CGCCGGCGGC GAT GCGGCCGTCG           CCAAAATCACCGCGG  67 138
   Rpal_2376 NONE
   Rpal_2375 NONE
   Rpal_2374 NONE
   Rpal_2373 NONE
   Rpal_2372 2556659 .. 2556702 - -10.9  -3.35679   CGCTGCGATCGACAA GGCCGCG-CTGCGCG-CGCGG CAGA CCGCGTCACGGTGGCACGGCC GGGTACTGGCGCTGT  68 445
   Rpal_2370 2554472 .. 2554504 -  -9.9  -2.98778   CGACAAGTGAAAGGA     CGTAGATGGCCGGG ACAAGG CCCGGCCATC-ATG      AGCGAGATCGTTCGG  62 58
   Rpal_2367 NONE
   Rpal_2366 2552121 .. 2552142 -  -5.9  -3.57615   TGAATAGTGCCGAAA           GTTGTCAAG ATAA CTTGACAAT            TCGATCAGCCAGCTT  57 30
   Rpal_2365 NONE
   Rpal_2364 NONE
   Rpal_2363 NONE
   Rpal_2362 2548448 .. 2548458 -  -8.2  -3.05384   GTGTCGCCGAGCCAA                 CCGC AAT GCGG                 GATGCTCGTTCCTAA  57 92
   Rpal_2361 2547965 .. 2547995 -  -2.5   -3.6608   ACGACGCCACCGAAA       CCCGCCTGTAC GAAGCCTAT GTGCAAGCGAG       CCAAGGGACAGTAGC  49 199
   Rpal_2349 NONE
   Rpal_2348 2534692 .. 2534708 - -10.8  -2.66692   CACGATCACCACAAG              GGGCCG AACGG CGGCCC              GGTCGAAGATGTCGC  59 363
   Rpal_2339 2522703 .. 2522725 -    -4  -3.15743   GATGACGAAAACAAC           CCGGAACGAC CGC ATCGTATCGG           TGGCTAAGCTTCTTT  45 293
   Rpal_2335 2518523 .. 2518551 -  -7.4  -3.55444   TCTGCACTTCCCAAA       CCTCGACCGGCCC AAGA AGGCC-GCCAAGG        GCGCTGCCCGCCTGC  60 272
   Rpal_2329 2512537 .. 2512578 -  -2.3  -3.94877   ACGGTCGAACAAGAA CTACTTCGATTGG-ATGAAC GTC GTCCAAGCCGATCTAAGCAG CGCTACGATAGATTT  54 215
   Rpal_2325 2509039 .. 2509061 -  -3.3  -3.63744   GCTCTTGCGAAAATA          CGGCGGCACG TGAA CA-GCCGGCG           GTCATCACGGTTTGT  51 514
   Rpal_2324 2508495 .. 2508505 -  -5.4    -4.258   CTACGGAGTAATAAA                 TCTG CTG CAGA                 TATCTTACGCCGCCT  68 82
   Rpal_2316 2503256 .. 2503282 -  -7.3  -3.63627   CGGCGACATCTGAAA        TGC-TCGGAGAC GCTG GTCTCCGACGCG         CGATCGCCTGGATGC  61 311
   Rpal_2311 2500758 .. 2500793 -  -3.9  -3.53012   CCCGGCGTGCGCAAA   GTCGGCCGG-CTG-CCG CTCG CGAACTGGCCGGTCGAC    GTCGCCGATCGCCTG  51 63
   Rpal_2309 2499320 .. 2499358 -  -6.4  -4.77165   GCTCCTAGAACAAAA   TGCGCCCGCACCGGCGGC AGA ACCGGCCTTGCCGGCGCC   GTGTTTCCGGATCCC  81 321
   Rpal_2308 NONE
   Rpal_2307 2498677 .. 2498691 -  -4.2  -2.71731   CCGACGGCTCAAGGA               CGGTCT TAT AGACTG               GGTCGTGTCAGCCGG  42 33
   Rpal_2306 2497961 .. 2498015 - -11.8  -3.04144   CGGTGATCCCGAAGA GCGCGCACCGCGGCGCCGTGCTCGAC GTC GTCCCGCTCGCCGGCGCGATGATCGC GCGACATCAGCAGCG  65 415
   Rpal_2295 2485743 .. 2485768 - -11.1  -2.66316   CCGGCCACGATACTA         CTGCGCTCCGGA GTT TCCGG-GCGCCG         TGCTATATCTTGAGA  62 41
   Rpal_2294 2484686 .. 2484697 -  -7.2  -3.02511   CTCATCGGGGTAAGA                GCGG GCGG CCGC                 GGATTGTTCGCGGCG  54 57
   Rpal_2293 2481954 .. 2481965 -  -3.6  -2.70932   TCGCTGTCGTAAGGA                GCCG AAGC CGAC                 CAGCACGTGGCAGCC  40 62
   Rpal_2292 2481631 .. 2481645 -  -3.5  -2.57931   GCGAGGGCCTAGAAG               TACGG ACGTG CCGCA               TCGATCGCCGGCCGG  39 4
   Rpal_2291 2480801 .. 2480821 -  -6.8  -2.61548   TCGCACGAGAAGGGA            GGGAGCTG TTCCG CAGCTCGC            CGTTCGACGAACTGG  48 118
   Rpal_2290 2480194 .. 2480229 -  -3.8  -4.07687   AGCGCTTCGCGAAAA    CAGCATCGGCGGGGCGA TCA TCTACCCGCCG-CGACG    AGCAGCACCGCCCGT  61 7
   Rpal_2289 2479505 .. 2479517 -  -6.9  -3.28712   CGCCTGTGCTGAGAA                GCCCG CTC CAGGC                AATAGTAGCGGAAAG  55 261
   Rpal_2285 2473608 .. 2473624 -  -2.1  -3.85698   GTTGTTCTCGACAAA              CTCGGCT ATT AGCCGTT              CGCCAAGTCCGGCGG  54 519
   Rpal_2282 2472166 .. 2472178 -  -3.4  -4.24204   GAGGCAGACCTAAAA                GACT CTCAC AGTC                GGACGCTGCTTACTT  61 452
   Rpal_2272 NONE
   Rpal_2271 NONE
   Rpal_2270 NONE
   Rpal_2269 NONE
   Rpal_2268 NONE
   Rpal_2267 NONE
   Rpal_2266 2457351 .. 2457385 -  -3.5  -3.35679   GTTCCCGACGGAGAA    GCAGGCGC-GCGTC GAGGCAAT GACCCGGCGCCTGA     CCGAGGAGCAGCGCA  49 144
   Rpal_2264 2456735 .. 2456756 -  -2.9  -5.08169   ACAGATCCGAAAAAA           GTCGTCC-GC ATT GCTGGACATC           CCCGGTGGGCTTTGC  78 254
   Rpal_2257 2449171 .. 2449181 -  -4.6  -4.07568   GGCCCGGGTTGAAAA                 GCAC CTG GCGC                 AGGAGGAACAGCCCG  62 206
   Rpal_2252 NONE
   Rpal_2251 2442797 .. 2442817 -  -2.5  -3.45571   TTTTCTAAATACGAA            CAGAAAAGA AAG TCCTTACCG            TTACAATATGGTGGT  46 433
   Rpal_2244 2434993 .. 2435011 -  -3.1  -3.79071   GCTACAACATCGAAA            GCCTCACG GTGT CG-GAGAC             GGAGGCGCAGAAGCA  56 408
   Rpal_2240 NONE
   Rpal_2238 2427589 .. 2427601 -  -3.3  -3.65314   CTCAATGGCGAACAA                CGCAA TCG TGGCG                TCGAACTCAACGTGT  53 464
   Rpal_2236 2424303 .. 2424316 -  -3.8  -3.80019   GCACAAACCGAAGAA               GCAG GCTGAA CTGC                TCGGCAATCACATGA  57 516
   Rpal_2234 2423577 .. 2423591 - -11.4  -2.72461   CAATGGCGGGCAAAT               CCACGC ATT GCGTGG               GTTTTGAGCAACCGA  63 59
   Rpal_2233 NONE
   Rpal_2232 NONE
   Rpal_2231 NONE
   Rpal_2230 NONE
   Rpal_2229 NONE
   Rpal_2228 2418129 .. 2418152 -    -8  -2.73721   ACTAAGCGCCAACTA          CGCCGATCGC TACC GCCAGCGGCG           GTGCAGCCACAGCCA  52 11
   Rpal_2227 2415620 .. 2415677 -  -4.5  -3.37796   GGTCAGCATGCAGAA GCAGATCTACCCGACTTACGCGGCGAC CGAC GCGGCCGCCTTCGTCGGACAGGGCGGC ATCGCGGCGAAATAT  51 242
   Rpal_2215 2402419 .. 2402444 -  -8.3  -2.78712   TGGCGAAGCGAATGA         TCGCTTTGCGCG CAC CG-GCAACGCGA         CCGCGTTCGGGTATG  54 72
   Rpal_2214 2399901 .. 2399914 -  -4.5  -3.95584   CGCTGACCAACGAAA               TCGGC GAGC ACCGA                CTGTGGATCTTCGGC  61 350
   Rpal_2207 2392227 .. 2392248 -  -4.4   -3.7829   ATCACATCCAGCAAA           TCCGCG CGATCGGGGC CGCGGA            ACGATCCCGTTGAAA  56 137
   Rpal_2206 2390923 .. 2390945 - -20.6  -4.19258   AGACCTCACGCAAAA           GAGGCCGCCG TTT CGGCGGCCTC           TTTTGGCTCGGAGAA 100 85
   Rpal_2204 2389377 .. 2389393 -  -3.5  -3.54146   CCTTCCAACCAAATA              GCCGGGC GGC GCTCGGT              TGGCGGCTGCGGGCG  51 264
   Rpal_2201 2384397 .. 2384423 -  -2.9  -3.50853   GCGCCGCAACCAGAA        TGGTCGGTGCCG ATGA CGGGGC-GACCA         GCCGGCTTCGCAGTC  49 39
   Rpal_2200 2383458 .. 2383484 -  -3.5  -3.66288   CATCGCCGAATACAA         GCGCCGCCAGG CCGCT CCCGGCGTCAA         GGTCACCCGCAAAAA  54 421
   Rpal_2193 2376189 .. 2376206 -    -4  -2.66316   GCGCGGACCATAGGA             GCCTGC CGGAAC GCTGGC              AACTGCGCGTCCAAC  41 115
   Rpal_2192 2375656 .. 2375668 -  -7.7  -3.28924   CAGCGGCGCGCACAA                TCACG CGC CGTGA                TGCGCTGCAATATGT  58 40
        moaA 2374461 .. 2374473 -  -3.3  -2.83403   GCGTGCGCACCAAAC                CAGCG CGT CACCG                TTCCGTCAATTGGAA  42 94
   Rpal_2190 2373767 .. 2373788 -  -2.2  -3.23216   TGCGATGACCACGAA           GCGGCTTAC TTTTT GTC-GCCGC           TGATGTTGAGTAACA  43 9
   Rpal_2189 2371720 .. 2371759 - -20.8  -3.57561   TCTGAACGCCTGAAA  CGAAAAGGCCCGGCCTCC GCGA GGAGGCCGGGCTTTTTTG   TTGCCGTTCGTCATA 100 159
   Rpal_2186 2367917 .. 2367939 -  -2.6  -4.28323   ATCAACCAACACAAA          TCCTGCGCG AGAATG CGCGC-GGT           TTCCCCAGCCTATAT  62 158
   Rpal_2185 2366314 .. 2366325 -  -7.2  -3.32844   GTCCCGATCTCACAA                GCCG GTGC CGGC                 GTTCATGATCGGCTG  58 8
   Rpal_2184 NONE
   Rpal_2183 2365476 .. 2365493 - -11.3   -2.5294   GAGTTGCGAGAACAG             GCGGCTA GGGA TAGCCGC              GCAGCCGGAGTTGGT  62 12
   Rpal_2182 NONE
   Rpal_2181 2364166 .. 2364208 -    -9  -2.71364   GTATCGGCTGAAGCA GGCGATGCCACAGGTGCCGA TCA TCATCAACGGCGGCATCGGC AGCATCGCGGAAGCC  55 415
   Rpal_2177 2358267 .. 2358287 -    -4  -3.57144   GCTGGCACTGTCAAA            TCATGCAA TGACG CTGCACGA            ACGTGCTGCCCGCAA  53 137
   Rpal_2176 2356118 .. 2356134 -  -9.4  -2.83271   CGAGCCGGACAAGTA              GCGCTG GCCCG CAGCGC              TTGGTTGCCTCAGCT  58 35
   Rpal_2169 2347986 .. 2348004 -  -5.2  -2.80816   TCTTCATGGAGGACA             GCCCTGAC GAT GTGAAGGC             TGTAGATAGTGCATC  44 110
   Rpal_2168 2346964 .. 2346984 - -11.8  -2.71364   GCACCGCGCGAATCA            GCGCCAGC CGAGC GCCGGCGC            GATGTGGGTGAGGAT  66 2
   Rpal_2167 2345263 .. 2345274 -  -5.8  -3.59979   CTCTCGTATCGCAAA                TCGG CGCG CCGA                 CTTGAACCGTTTTCT  57 62
   Rpal_2166 2344052 .. 2344083 - -16.7  -3.02263   ATATCTGCCGTAAGA      CGTCGATGCCCGGC ACGAG GCCGGGCAT-GACG      GAGTTTGTTGGGTAT  84 45
   Rpal_2164 NONE
   Rpal_2163 NONE
   Rpal_2162 2339745 .. 2339756 -  -7.2  -3.04263   ACCGCATCTTCAAGA                CCGC AGAG GCGG                 AGGCCGCGTCCGGCA  51 275
   Rpal_2157 2336243 .. 2336265 -  -3.3  -3.64822   ATGCGGCGATCGAAA          TGCCGACCGC CAAG GCAG-CGGCC           CCAGCTGTCCGGGGG  51 167
   Rpal_2156 NONE
   Rpal_2155 NONE
   Rpal_2154 2332441 .. 2332462 - -17.3  -3.22182   ACAGACGACAAGACA           GGCGTGGCC ATTC GGCCACGCC            GCGGTGAGACCAGAT  89 74
   Rpal_2153 2331363 .. 2331413 - -16.1  -3.61715   TAGGCGTGCTAACAA CCTCGGGATTCCGGGTTCGCTCGC TGGC GCGAGCGC-CCCGGAATGACGGGG CGGGGAGCGCGGGTG  91 42
   Rpal_2152 2330430 .. 2330475 -  -4.5  -4.29302   GCGAGATGAAAACAA CTTCGGGATTCCGGGTTCGCGC TGC GCGCGC-CCCGGAATGACGGCA CGTGGAAGGATCGTC  66 39
   Rpal_2151 NONE
   Rpal_2150 2328239 .. 2328266 -  -8.4  -2.71712   CGGCCGGGGTGAAAC        CGGTCAGATCGT CACC ACGATCTTGCCG         AGGTGGCGGTTGGCT  54 1
   Rpal_2149 2326698 .. 2326720 -  -5.6  -3.60419   AGTCCGAAAGGAGAA          CGGCCGCAA AGTTTG TTGCGG-CG           CTTTCAGCTCAGTCG  57 34
   Rpal_2148 2324193 .. 2324209 -  -8.7  -3.37493   CGGTGAAGAGACCAA              GCCTGAC GAG ATCAGGC              GGCGAGGGGGCGCTG  60 20
   Rpal_2146 2318891 .. 2318903 -  -3.3  -3.53761   GAAGGCGGTGCTAAA                GTCCA CGC TGGGC                TCCTCGCATCAATCG  49 119
   Rpal_2145 2318398 .. 2318426 - -11.7  -2.64099   CGGCTGTATCAGAAC        CTGACGCAGATCC TGC GGCTGTGCGTCAG        CGAGAAGTTCAACCC  61 244
   Rpal_2139 NONE
   Rpal_2138 2308016 .. 2308048 - -11.2  -2.64735   AGCCGACGCAGAGCA     GCCGGCGCGAGGCCG TGAC CGGCCTCGCGT-GGT      TGGGTTCGGGAGTGA  62 66
   Rpal_2136 2305044 .. 2305074 -  -8.9  -3.25823   CGCCTCCCAGACGAA      GCTGG-TGACGCCG TATT CGGCGTCCTCCGGC       ACGTGGTCGTCGAAG  60 484
        amiF 2303602 .. 2303629 - -12.6  -3.05384   CCGCTCCTCACTCAA        GGACCCGGTCGC CGTG GCGGCCGGGTCT         CCCTTGGGATGACGA  71 53
   Rpal_2118 2285423 .. 2285447 -  -7.1  -2.95789   ATCACACCAACGACA         CCGGC-CAGC CGACCC GCCGCGCCGG          CACGCTGCGCTTCAT  51 92
   Rpal_2105 2277075 .. 2277103 -  -5.9  -3.13299   GCACGACACGCAACA        TGGCGGCACTCCA GGG TGAGATGCCGCGA        GGGTGGGCGATTATG  51 80
   Rpal_2104 2276415 .. 2276427 -  -4.8  -2.71011   ATGGCGGCGGAACCA                TCGC GGGCG GCGA                CGGGTTGCTGCACCA  44 365
   Rpal_2100 2273193 .. 2273207 -  -3.5  -3.30124   CCTTATCCGTTAGAA               GTACC AGCCG GGCAC               CACCCTGACCGTGGG  46 5
   Rpal_2099 2271891 .. 2271905 - -12.8   -3.2964   AAATGGTTTCCACAA               GCCGGC GAC GCCGGC               ATGTGCCTTGACTTG  71 258
   Rpal_2085 2257538 .. 2257562 -  -5.7  -3.54424   GCCCATTCTCGGAAA          GCGCAGC TTGATTGTGTT GCTGCGC          TTTCAGCGCAGCCTC  57 39
   Rpal_2084 2256098 .. 2256117 -  -3.6  -3.81488   TTTGCCTAAATAGAA            CG-CACACT AGA AGTGTGTCA            CATACTGAACATCCG  54 193
   Rpal_2082 NONE
   Rpal_2081 NONE
   Rpal_2080 2250538 .. 2250548 -  -8.2  -3.28924   CATCGCCGCCGACAA                 GGCG TTC CGCC                 CGATAGCCGAGGGTG  58 350
   Rpal_2076 2247010 .. 2247022 -  -9.1  -3.38812   TTGTTCTGAACAAGA                GCGAC CCA GTCGC                CGGTTCGGGGAGGAG  63 133
   Rpal_2073 NONE
   Rpal_2072 NONE
   Rpal_2071 2241522 .. 2241543 -  -2.1  -3.25204   CCAGCCTGAAATACA           TCGCCGATC TGTC GCCGGGCGA            GCGCGACGACGCGGT  44 276
   Rpal_2068 2239989 .. 2240003 -  -2.8  -3.62096   TGCCAGCACCGCAAA               TTTACG CAT CGTCAA               CTCCCACACATACTA  51 99
   Rpal_2067 2238874 .. 2238892 - -13.1  -3.72231   CCAGAGACGCAAGAA             CGGGCGC TTGGC GCGCCCG             TCTGTCGAAGTCACT  81 60
   Rpal_2066 2237655 .. 2237671 - -12.3  -2.69151   GGTTCTGACAGAGGA              GCATCGC GTA GCGATGC              GTCTCGAGCCGTGCG  66 155
   Rpal_2062 2233658 .. 2233668 -  -6.8  -3.53811   CGCAGGCGGTCGAAA                 GCGA GAA TCGC                 CTGCTCCGATGGTCG  59 50
   Rpal_2061 2233121 .. 2233133 -  -4.7  -3.53012   TCGTGGTGCCGTAAA                GCGGC GGA GCAGC                CGGAGCCGATCGCGA  53 41
   Rpal_2058 2230455 .. 2230481 - -17.3  -3.19653   GGACAATTTGACGAA        CGCGCC-CGCGG CCTG CCGCGCGGCGCG         TTTCGAACCGACGAC  89 477
   Rpal_2055 2228210 .. 2228231 - -14.4  -4.65895   GTGCCCACGCAAAAA           CGCCGCCC GGAATT GGGCGGCG            TTTGAATTCCAATAG 100 189
   Rpal_2054 2225615 .. 2225633 -  -3.1  -3.03243   AGCGAGGCGGCAACA             TGAGCCA CGCGC TCGCTCA             AGCCCTTTGTCTGTT  42 333
   Rpal_2046 NONE
   Rpal_2045 2215736 .. 2215746 -  -3.2  -3.53012   GCGCGGTCCGCGAAA                 GCCT GTC AAGC                 GGCGGGCTGCGCCGG  49 52
   Rpal_2044 NONE
   Rpal_2043 NONE
   Rpal_2042 2213988 .. 2214015 -  -7.6  -2.59191   GGATATTCCCAGAAG        CGGCGGCTCAGTC GCG GTCTG-GCAGCCG        TTCGATCCCGGCGGT  51 5
   Rpal_2041 NONE
   Rpal_2040 NONE
   Rpal_2039 2209229 .. 2209246 -  -8.5   -4.0641   CTTCATGCAGACAAA             CTAGTCT GGTT AGACTAG              TTCGTCAATTAAGCC  73 62
   Rpal_2038 2208967 .. 2208987 -  -2.4  -2.53715   TCCATTACGATCAAC            GCCGGCCC TCGTT GATCCAGC            TCTTAATCTCGTCGT  37 0
   Rpal_2037 NONE
   Rpal_2036 2207687 .. 2207697 -  -8.2  -2.71712   TGGCCTGTTCTAAAC                 CGCC GTT GGCG                 TACCGTGTCGCCTAT  54 37
   Rpal_2035 NONE
   Rpal_2034 2206831 .. 2206859 -    -6  -2.52464   GTCGGGCTGAATTCA        TGGCGCCC GTTTACAACGATT GGGCGCCA        GGAGCGAGGGGAGTC  45 84
   Rpal_2033 NONE
   Rpal_2032 NONE
   Rpal_2031 NONE
   Rpal_2030 2203325 .. 2203343 -  -2.2  -4.64766   CGCATACCTCAAAAA             CTGCCCGC AGT GCGACCGG             TTAGGTACAGCGAAG  68 86
   Rpal_2029 2202850 .. 2202868 -  -6.6  -4.14472   CGAAGACTGCGAAAA             GGAGTGCC GCA AGCACGCC             GATCATCACGCCACT  66 189
   Rpal_2021 2192762 .. 2192779 -  -8.4  -3.59966   AGAGCGGACACAGAA             CGCCTG TTTCTT CAGGCG              CAGGAAATTCGGTTT  65 19
   Rpal_2020 2191614 .. 2191641 -   -14  -2.53263   GGTAGGTGGAACGCA        GTCGCCGGCCGC TCAG GCGGCCGGCGGT         GCGGCGACGGTGGAT  71 10
   Rpal_2015 NONE
   Rpal_2014 2185610 .. 2185633 -  -2.2  -3.72576   GTCTCGTCCACCAAA          CCATGCGGTC CCGC GCCCTCCTGG           ACATCCGCCCCGCGA  52 204
   Rpal_2013 2183817 .. 2183834 -  -9.9  -2.57564   CGATGCCCGCAGAAT             GGTCTGA TGAC TCAGACC              TGGCTTGCCGACGAG  57 386
   Rpal_2007 2175414 .. 2175438 - -12.1  -3.73775   GGGATTTCCACTAAA          GCGATCACGCC GCC AGCGTGCTCGC          CTGGTCGCGGAACGA  78 5
   Rpal_2003 NONE
   Rpal_2002 2166310 .. 2166326 - -13.7  -3.30106   TCGAATGGAAATAGA              TCCGCGC GCT GCGCGGA              AATGTCGCGCGGATG  77 97
   Rpal_2001 2164866 .. 2164890 - -18.6  -4.86621   ATCCTGAACGAAAAA          GCCCTCCGCG GTGAT CGCGGAGGGC          TCGTTCGTCCAGACG 100 55
   Rpal_2000 2163335 .. 2163373 - -10.3  -3.63991   CATGACGGGGAATAA  GGCCCCGTCGTTACGAGCG AAG CGC-CGCAATG-CAGGGCC  CTGTGCACTGTGGCT  70 92
   Rpal_1997 2158873 .. 2158896 - -14.6  -2.61383   ATGCTCACCGACAAG          GGC-CGCGCCA CAC TGGCGCGCGCC          AAGAAGCTGGTGGCG  71 270
   Rpal_1995 2157268 .. 2157279 -  -3.6   -3.0701   AGAATTGGCAGCCAA                CGCG GCAT CACG                 CTTAGTCCTTCTCTT  43 27
   Rpal_1994 NONE
   Rpal_1993 2154428 .. 2154449 -  -7.3  -3.22653   ATTACGGCCACAATA           TCGGCGA CCGCGTAC TCGCCGA            GATCGGTGGCATCCT  56 363
   Rpal_1983 2143671 .. 2143689 -  -5.3  -3.29511   TCGATTGTCCCAGAA             CACAAGC GCAGG GCTTATG             GATTCCGGGCTCGCG  50 97
   Rpal_1982 2142904 .. 2142950 -  -9.3  -3.21924   TGACGCCGCAGAACA GC-TCGGGGTTCCGGGTTCGCGC TCC GCGCGC-CCCGGAACGACGGTGC TAGACGGCCATGAGC  61 48
   Rpal_1979 NONE
   Rpal_1978 2138696 .. 2138732 -  -8.8  -3.57144   GCGCGGAGCGCGAAA    CCGGAATCTCGC GGTGTTCTGCTGA GCGAGACTCCGG    GTTCGCGAGCTGGCG  65 209
   Rpal_1977 2137590 .. 2137607 - -14.1   -4.1899   TCACCCGACGGAAAA             GCCCGCC GCGA GGCGGGC              TTTTCTGTGCGTGGA  93 132
   Rpal_1970 NONE
   Rpal_1969 2127910 .. 2127938 -  -5.2  -2.81815   TGGAACTATGAATTA        GCAGCCGCGA CGTTGGTAT TCGCGTCCGC        GGTTAGCTCGCAGAT  44 28
   Rpal_1968 2124566 .. 2124584 -  -4.5  -3.90729   AACAAGCCGGAGAAA            CGCG-CCG AGAT CGACCGCG             GCGGCTTCATCACCT  61 420
   Rpal_1965 2121418 .. 2121429 -  -7.2  -3.18912   CCAGGCACTGAGCAA                GGGG CGCG CCCC                 CACCCGACCGGCCTT  56 93
   Rpal_1964 2119529 .. 2119561 -  -9.8  -3.53012   GGCGCTCGTGGCAAA      TGCAGCGCAGAGCG ACGAG CGCTCTGCGATACT      GGGTCGCCCGGACGA  68 86
   Rpal_1962 2116988 .. 2117020 -  -3.4  -3.31322   GGTAATCCGCTACAA      GGCGTCCGAA GCCACTAACTCTA ATCGGACGCC      TTGCTATCATTCCCA  46 73
   Rpal_1961 2116088 .. 2116108 -    -4  -3.53012   GGCGGTTCCGGGAAA           GCCCCGATC ATTC GAT-GGAGC            GCGCGATGATCGGTC  51 522
   Rpal_1957 2113436 .. 2113448 -  -6.2  -2.59683   AGTGGATGTCAGAAC                GCGG TGTAG CCGC                CGTCGATCACGAAAG  46 6
   Rpal_1956 2111778 .. 2111815 - -10.6  -3.18681   GCCGAAGGCGACGAA   GCAATCCAGGAGCTCCG TGCAC CGCGGC-CCTGGATTGC   TTCGCTTCGCTCGCA  64 85
   Rpal_1946 2099484 .. 2099495 -  -7.2  -2.52676   CACTCCGGTAATTCA                GCGC GGAC GCGC                 GAGGCAGAACGAAAG  50 65
   Rpal_1945 NONE
   Rpal_1944 2097134 .. 2097164 -  -6.1  -2.73364   CCTTCATGGGAATGA       CTCCGTGCGATTC GCTAA GTATCGCACAGAC       TTAGTTTGCGTGCCG  46 127
   Rpal_1943 2096253 .. 2096272 - -10.7  -3.15249   GAGATGGTGGAGTAA            GCGCTCC GTTAGG GGAGCGC             GCAGAAGCCGCCGTC  67 39
   Rpal_1941 2093677 .. 2093702 - -11.2  -4.72986   CAGCCGGACGAAAAA         TGCTCCCGTCC TTGGC GG-CGGGAGCA         TTCGCTGAAGCGGTC 100 39
   Rpal_1940 NONE
   Rpal_1939 NONE
   Rpal_1938 NONE
   Rpal_1937 2089301 .. 2089315 -  -2.7  -3.54146   GCGTTGAATCAAACA               GCGAC GTTGT GACGC               CCGTGCGGTTGACGA  49 123
   Rpal_1936 2087467 .. 2087482 -  -2.5  -3.97834   GAAGCCGATGAGAAA              GCCTG GATGAT CAAGC               TGGCGGAGCGGCTGA  56 394
   Rpal_1934 2085120 .. 2085175 -  -8.8  -2.84634   CGTGAGAGTAGCACA GCGTGTTGCAACCGCCAGTCCCGGAAG GCG CCTACAGG-CTGGCGGGCGCCGGACGC GGGTCGATCGGGGTC  55 1
   Rpal_1933 2084827 .. 2084846 -  -2.8  -3.18383   AGGCGGAGTGATCAA            GC-TTCGTC GAT GACGATCGC            ATTCTCAGGGCAGTT  44 2
   Rpal_1932 NONE
   Rpal_1931 2082787 .. 2082807 -  -5.3  -3.14931   GGCACGGTGGAGCAA            CGCCGTGAT CAA ATCTCCGCG            TGCAGGGAGTATGGA  48 85
   Rpal_1930 NONE
   Rpal_1929 2080096 .. 2080114 - -13.1  -2.75382   GACGGGACGGAACGA             CGCGGGG GAGAT CCCCGCG             GTCACCGCGCCCGGA  68 361
   Rpal_1928 2077739 .. 2077776 - -12.5  -2.62184   GGCCGTCCTACACCA   TCGGCATCCGCCTGCGC TGAC GCGCCGGCCGCGGCCGA    GGCAGCCTCTTCGCG  67 493
   Rpal_1924 NONE
   Rpal_1923 2071466 .. 2071493 -   -12  -3.35679   GGCCCGCAGCGACAA        GCCGCGACGC TATGAGCT GCGTCACGGC         GATGTGCTGGTGTGG  70 155
   Rpal_1920 2069302 .. 2069317 -  -2.5  -3.53012   CGGCCGGGTGCGAAA              CCG-GC CGCCT GCGCGG              ATCGACCAGCCATTA  47 38
   Rpal_1919 2068789 .. 2068809 -  -6.7  -4.25104   CCTGGCCCATGAAAA            GCGCTCGCC GCG GGTGAGCGG            TTACACACAGCGCAA  72 150
   Rpal_1917 2067463 .. 2067488 -  -2.5  -2.83403   GGCGGCCTATGAAAC         CG-CCAAGAAGC TAC GCCTGCTGGTCG         CGCATACCATCTTCG  40 424
   Rpal_1912 2061729 .. 2061765 -  -4.5  -2.71011   ACGGCTTCTCAACGA  GTCATTCCGGG-GCGCGC GTCA GCGCGAACCCGGAAT--C   TGATGCTTGCACTGC  42 150
   Rpal_1903 2050428 .. 2050440 -  -4.7  -4.93296   GGAGCACGACAAAAA                CCGCG CGC CTCGG                AGGCCAGCTGGGATT  80 207
   Rpal_1902 2048737 .. 2048773 -    -5  -2.78384   CCGCGGTGGATCAGA   GGTCACACCCCCGCCGG CAGG CCG-CGGAGGTGTGGAA    AGGTCGGAGCGGCTC  44 39
   Rpal_1901 2047764 .. 2047782 - -11.7  -3.64703   CTCCCTTGACTTAAA             GCTCCGG CGGTT CCGGAGC             TTTCTTTATCTCGGG  75 71
   Rpal_1900 2045862 .. 2045895 -  -8.2  -3.98083   GAGCGAAGCGACAAA     GCAATCCAGCGC TGTGCCCGGG GCTCTGGATTGC      TTCGCTTCGCTCGCA  73 74
   Rpal_1898 2043115 .. 2043137 -  -7.6  -3.27704   AGCGGGCAAACCGAA           TGTGAGCGGC CGG GCCGCTCAGC           GCAGTCCGGCGAAGC  58 21
   Rpal_1897 2042484 .. 2042497 -  -3.8  -2.70932   CGTGCGGGTCAATGA               CGTG GAACAT CACG                GATTTAAATCGGCCG  42 55
   Rpal_1892 2039418 .. 2039441 -  -5.2  -3.14602   GCCACTTCATCAACA          CGCTGAGC-GG CCG CCTGCTCGGCA          CCGCGTTTCCGTATC  49 380
   Rpal_1888 2035403 .. 2035422 -  -4.2  -3.59262   TTCCATACCTCCAAA            CGATACTC GCGG GAGCCTCG             AACAGCATTCAGAAG  53 123
   Rpal_1887 2034765 .. 2034785 -  -6.8  -3.40403   CGCGCTGGAGCAGAA           GCTGGCCAC GGCG GCGGCC-GC            AGGCGTTGCGCGCTA  56 188
   Rpal_1883 2030933 .. 2030943 -  -4.6  -2.66316   CTTGTTACGACATCA                 GGCG CAG CACC                 TTCGACAGCCGCGCG  43 4
   Rpal_1882 2029184 .. 2029225 -  -7.2  -3.46068   GGCTGAATCCAAAGA CGGTCGCT-CCGG-CGCATC TTGT GGTGCGTCCGGAAGCGTCGG CTTGACGTGACGCGG  60 47
   Rpal_1879 2022317 .. 2022337 - -12.5  -3.11178   GAAGTAAGCTGAAGA            CCGGCGGCA TCG CACCGCCGG            TCTTTCGTCGTCGGG  73 47
   Rpal_1877 2018347 .. 2018372 -  -4.7  -3.05463   ATGCCGTTCAGCGAA         TTGAAGATCGA TCGC TCGTTCGTCAA          GGACTGCCTGACCGA  45 321
   Rpal_1868 2005269 .. 2005303 -  -8.6  -3.06261   GCTGAAGCTCGAAGA    CGACCGCCTCACCGT GCACGT ACT-CGAGGCGGTCG     ATCCGGCGTCGGCGA  55 280
   Rpal_1865 2002549 .. 2002571 -  -6.3   -4.1711   ATGATTGTCAAGAAA           CGATGACAT GTGCG ATGTCAACG           ATTGTTGACGCAGAT  69 133
   Rpal_1864 NONE
   Rpal_1863 NONE
   Rpal_1862 1998709 .. 1998739 - -16.3  -4.26076   TGAGCTGTATCAAAA      CGACAAACGCGCGC CGAA GCGCGCGTTTGT-G       TAGCTGGTAAAATTG 100 50
   Rpal_1861 1998152 .. 1998181 - -12.9  -2.87132   CGCTGGCGTTAGAGA       CGCCTGCCGGCG AGCATGG CGCCGGCAG-CG       GCCGGCGCAAGGCAG  70 51
   Rpal_1860 NONE
   Rpal_1859 1996558 .. 1996568 -  -8.2  -2.90194   AGCGGCGTAATTATA                 GCGG ATT CCGC                 CGGGGACGAGGCGGT  55 87
   Rpal_1858 1995569 .. 1995579 -  -8.2  -4.56597   GCGTCGTGTCAAAAA                 CGGC TGG GCCG                 GATCGAAGGGCAGGT  81 288
   Rpal_1856 1992452 .. 1992478 -    -8  -3.36515   CGCTATCCGCAAATA         CGCAACGATTTG CGG CAAACCTTCGCG         ACCGCAAAATACGTC  58 110
   Rpal_1855 1991638 .. 1991650 -  -3.3  -4.09739   CGAAGGGCTCGAAAA                CCCCA CCG CGGAG                AATATCGCGATCTGG  59 206
   Rpal_1852 1989381 .. 1989395 -  -5.6  -3.32844   GCTGCTAGCTTAGAA               CGACGC GAA GCGCCA               AGGCGGCGCAACGTC  52 39
   Rpal_1850 1987309 .. 1987340 -  -5.1  -3.01712   GCGGGCGCTTGAAGA      CGTGGATGCGCGGC ACAAG GCCGGGCATG-ACG      ATATCGGACGCGAGT  47 57
   Rpal_1849 1986104 .. 1986126 -  -4.1  -3.14125   GGCACACAGGGAATA          GCGATCGCGC GGCC GCGTGAT-GC           GGCGACACTACGGTG  47 97
   Rpal_1848 1985562 .. 1985572 -  -6.8  -2.72661   GATCACGCCGAAGGA                 TGCG CAA CGCA                 GATTCGGCGGTGCCG  48 55
   Rpal_1844 1981087 .. 1981114 -  -7.6   -3.1505   ATCACCGTTGATCAA        TCGGCCGACCGC GATG ACGGCCGGTCAA         GTTCACCGCGTCTGC  56 47
   Rpal_1842 1978305 .. 1978342 - -11.2  -4.15833   AGCATCATCCCAAAA   GCTGATGCGCGGGCCC GCTTCA GAACCCGCGCATCCGT    CAATCGCTGCAGTGC  84 44
   Rpal_1838 1973902 .. 1973939 - -11.9  -3.66908   GTTCCGGAAAAGGAA   CGTTCCCGACGCGCTGA GGTT TCATCGCGCCGCGGACG    TTGTTGGCGTCAGCT  75 35
   Rpal_1837 NONE
   Rpal_1836 NONE
   Rpal_1835 1972526 .. 1972546 -  -8.9  -3.28712   CGTCGTCGCCGAGAA            CCGCGCCGA AAT TCAGCGCTG            AGCCGAACCTGCAGC  60 17
   Rpal_1833 1971262 .. 1971285 -  -3.9  -2.89564   GCTGCACCGGATAGA          GCAC-GACCA TCTGC TGATCCGTGC          CCGGCAGGTGAGCGA  43 257
   Rpal_1830 1966001 .. 1966028 - -20.6  -4.02108   CTCACCAGAACGAAA        GAGCCGCGCGGC TGAC ACCGCGCGGCTC         GTGTTCACAAGGCGA 100 58
        flhA 1962091 .. 1962115 -  -6.3  -3.84284   GGAAAACGTAGGAAA          TCGACCGTACG TTC CGCAGGGGCGA          TCACAAGCGTGTGAA  65 240
   Rpal_1827 1961680 .. 1961710 - -13.4  -4.48221   CATCAACGCACAAAA       GAAAAACGCCCG TGGGGAG CGGGCGTTTTCC       TTTGGGTCTCCACCT 100 113
   Rpal_1822 1956924 .. 1956943 - -12.8  -5.75538   CCCAAAAAACAAAAA            CCCCGCCA TTTG CGGCGGGG             TCAAGGACCACTCGG 100 79
   Rpal_1815 1948920 .. 1948936 -  -9.4  -4.26076   CGACCGCGAGGAAAA              CCGCGA TGCCT TCGCGG              CCAATCCGGAGCGTT  80 105
   Rpal_1813 1947703 .. 1947736 -  -8.7  -2.57344   CATTTGCGGCACAAT     GCCATGAGCCGGCGC CTTC GCGCCAGTGCATTGC      GGCGTTAACGTGAAT  53 89
   Rpal_1812 1945976 .. 1945990 -  -4.2  -3.91084   GTATCGGGAACGAAA               CGGG ACACAAG CCCG               GGTGGAGAGGATGCC  58 314
   Rpal_1810 1944662 .. 1944714 -  -8.1  -3.02144   TGAGCGCTTGTAATA GGCGCAGCCTGATGATGACGGCGGG TAC CGCGCCGTCTCGAACCATCCGCGCC GGCGATGTCCTTTGG  57 43
   Rpal_1807 1941665 .. 1941709 -  -8.6  -3.28712   CGGTCCCGGGCACAA CCGGCAATTCGGCCGCA-GC CGCCTGT GCACGCGGCCG-ATCGCCCG GCTGCCTTAGTTTTT  60 32
   Rpal_1806 1940739 .. 1940756 -  -6.3  -3.01924   GAGGGCCTCGGAAGA             GGTTGCGG CGG CCG-AACC             GATCGTCGCGGACAC  49 92
   Rpal_1803 1937159 .. 1937169 -  -2.4  -2.79796   GGGGAGGTCATGAGA                 CCCG GAC CGGC                 AAGGACTCGTAGCCC  39 7
   Rpal_1802 1935857 .. 1935908 -   -18  -3.14931   CCGATGCCGGATCAA CAGCTCGGGATTCCGGGTTCGCCGC TAC GCGGCGC-CCCGGAATGACGAGTTG ATGTTACCGGGTGCA  91 61
   Rpal_1801 NONE
   Rpal_1800 1933588 .. 1933601 -  -3.8  -3.06915   AGCGAGGGGAGTCAA               CACG AGTGTG CGTG                TGGCCCGAAGCCGTT  45 203
   Rpal_1799 1931377 .. 1931394 -  -4.8  -3.71998   CACCGATGAACAGAA             GGC-GCG GATGG CGCAGCC             GATGCCGAACGACGC  55 514
   Rpal_1795 1928124 .. 1928146 -  -3.3  -2.75343   TTTAGATGTTCAAAT          CAG-GCGCCG TAGT CGGCGAGCCG           CAGTCCGGTGAACTG  40 2
   Rpal_1794 1926785 .. 1926805 -  -4.7  -3.40382   GATGAAAGGGGACAA           GGTG-CGC GTGCGT GCGCCACC            GTGACTGGATGCGAA  53 318
   Rpal_1793 1925198 .. 1925213 -  -2.4  -4.59773   CCGTATCGGGAAAAA              GCCCAC CAGC GCGGTC               CCGGTTTCTGCTGCG  70 482
   Rpal_1791 1924287 .. 1924302 -  -4.6  -2.87132   GCCTCTCCGCACAGA              CGGAGC GGAT GCTTCG               AATCAGGCCGGCGAG  46 125
   Rpal_1790 1923302 .. 1923328 -  -8.7  -2.64155   TGGCTTTGAAAGGGA         CGCACTGCCAT ATAGG ATGGCGGTGCA         AGATTGCCACCGCGC  53 391
   Rpal_1788 1922818 .. 1922841 -  -2.3  -2.70932   GCCGCCGGTGAATTA          CGATACTGC GCAATA GCTGAATCG           CCTCTTCGGCGAATT  39 42
   Rpal_1787 1921552 .. 1921586 - -16.5  -3.14132   TTGGGTGGCTACTAA    TTCCGGGCTCGCGAGC TGAC GCTCGCGC-CCCGGAA     TGACGGAGGAAGGGT  86 41
   Rpal_1781 1914679 .. 1914695 -  -5.7  -3.63627   TGCGGAGACGGCAAA              GCCGCCG GCT CAGTGGC              TGTCGGCGACCTCGG  57 18
   Rpal_1780 NONE
   Rpal_1779 NONE
   Rpal_1778 1912517 .. 1912538 - -18.7  -3.27525   GGTCGCGAAACGCAA           CGCGGGCCG AAAC CGGCCCGCG            AGCGGGGGCTTTCTA  93 75
        rpsD 1911723 .. 1911742 - -16.4  -5.28942   CAGCGCAAACAAAAA            GGCCCCGG CGAA CCGGGGCC             TTAATGCATCGGACT 100 64
   Rpal_1776 1910227 .. 1910251 -  -9.9  -3.10715   GTGACCAGCAGTGAA          GCGCACGCCCA GCG CGGGCGTGGAC          GCGGTCGGGGCTATA  62 160
   Rpal_1772 NONE
   Rpal_1771 NONE
   Rpal_1770 1903296 .. 1903331 -   -14  -2.62263   ATTGCTGGGACACCA    CCCGCAACACCACCAG CCTG CTGCTGGTGATGCAGG     AATGGGGCTTGTTCA  69 247
   Rpal_1768 1899608 .. 1899626 -  -3.1  -2.71712   TCGTTGTCCGGAAAT            TCG-CGCA GGCA CGCGTCGA             TCCGGTTTCTTCCGC  40 127
   Rpal_1767 1898266 .. 1898276 -  -2.4  -3.81951   TGCGACAGGAGCAAA                 CCTC GTG GGGG                 GGCAGTGCACGCATT  52 104
   Rpal_1766 1897129 .. 1897168 - -13.6  -3.55444   GCCTCATTCTTGAAA  CTTTAACGGCGCCGGCTAT GAG ACAGCCGGCGCCGTTTT-G  ATTTGGCTTTGCCGC  81 120
   Rpal_1764 1895239 .. 1895287 -   -16  -3.13522   AGTCGTGTAGTAACA CGGCGGCATCCCACCTCTCCCCG CAAG CGGGGAGAGG-GAGAAAGCACCG ACGCCTGGCCTTCGA  86 53
   Rpal_1758 NONE
   Rpal_1757 NONE
   Rpal_1756 1884649 .. 1884666 -  -4.7  -3.61398   CTCGTCCCCGAAGAA             CGCGCCA TCTT CGGCGGG              CTCACGGTCGAGGAG  52 504
   Rpal_1750 1878031 .. 1878067 -   -13  -3.33696   GTGTTCGGGAAGGAA   GACG-GTCGCGACCGGT GAGC ATCGGTCGCGCCACGTC    ACGCTGATGCTCGTC  74 64
   Rpal_1743 1868875 .. 1868902 -   -14  -3.14602   TCTACCCGAGCAAGA        CTGGCGCGCGCC CTCC GGCGCGCGCCTT         TGTCTTTGAAGGGCT  76 312
   Rpal_1728 1851743 .. 1851760 -  -8.4  -3.30443   CCACCACCATACCAA             GCCTCC AATGCA GGAGGC              CTTATAGCAGAAATC  60 63
   Rpal_1727 1850940 .. 1850971 -  -3.6  -4.02817   CTCGCAGAACAAGAA      GTAGCG-CTGCGTCT CTC AGCCGCAGGCCCTGC      GGCTCCTCATCCTTC  58 129
   Rpal_1724 1846550 .. 1846577 -   -20  -4.32857   CTTCCCAAACACAAA        GGGCTTCGGTTC TTGC GAACCGAAGCCC         TCGTGATTTTCACGC 100 60
   Rpal_1706 NONE
   Rpal_1705 1827806 .. 1827833 -  -6.3  -3.75629   GAGCGCCAAGGCAAA       CGC-CTCGACCGC GCCC GCG-CCGAGCGCG        ACAAGGACCCCGCGC  62 221
   Rpal_1702 1826280 .. 1826299 -  -6.4  -3.07043   TCGACTATCTCAACA            GTGGCGAT TTCG ATCGCGAC             TTCGCCTTCACCCGC  49 308
        hemE 1819576 .. 1819600 - -17.2  -5.08255   ATCCGCAAAACAAAA          GAGCCGGTGC GGGCT GCACCGGCTC          TTCGATCAGGTCGGA 100 61
   Rpal_1695 1818293 .. 1818308 -  -6.8  -3.14051   GCAGGCCGAGGAAGA              CGCCAA GTCG TCGGCG               CGGCAGTTCCGCGTC  52 239
   Rpal_1691 NONE
   Rpal_1690 NONE
   Rpal_1689 1811004 .. 1811030 -    -5  -3.14132   CGCGTCTTGTAGGAA         CCGGCCAATGGC CTC GCCATTCGCCTT         AAGTTTCTCTCTCGA  48 41
   Rpal_1688 1809720 .. 1809742 -  -9.1  -3.57263   ACCTGGATCTGGAAA           CTCGGTTCC GGGCA GGAACCGTG           GCACGGAAAGTTATT  68 39
   Rpal_1687 1809073 .. 1809093 -   -14  -3.60151   CGCCGGAAACGAGAA            TGGCCGGG ACAAG CCCGGCCA            TCATGGAATTTTGAT  81 124
   Rpal_1677 NONE
   Rpal_1676 NONE
   Rpal_1675 1793821 .. 1793840 -  -5.6  -2.56596   CCGGCCAGCAACTCA            CCGCCTCG CTGC CGACGCAG             GGGATCTATCTGGCG  44 487
   Rpal_1670 1788381 .. 1788423 -  -9.9  -3.21747   CGAGGGTAGCAGCAA GCTGCAGCCGCTCGACGTCC AGAA GGACATCAAGCGGATGTA-C AACGATCCGCGGGCA  63 63
   Rpal_1662 1781766 .. 1781799 - -13.9  -2.72344   CCTGACGTGGAACGA     TCGTCGGGT-GCGACA GCC TGCCGCGACCCGGCGA     TCAGGCGCTGATTAT  72 65
   Rpal_1661 1781061 .. 1781082 - -18.7  -5.07652   GCGGCCAAAACAAAA           GCGGCGGGG AAAT CCCCGCCGC            CTGCGTCGTCAGTGG 100 64
   Rpal_1660 NONE
   Rpal_1659 NONE
   Rpal_1658 1776928 .. 1776942 -  -5.7  -3.34517   ATCGTCTTTGAAAGA               CGCTT TTGCG AAGCG               GGATGGATGGCCGGG  52 100
   Rpal_1656 1774954 .. 1774999 - -15.5  -3.05715   AAGCTTGGCATTTAA GTTCGTCATTCCGGGCTCACGC TTC GCGTGC-CCCGGAATGACGAGT GGAGGGTGGCAAAGC  81 46
   Rpal_1655 NONE
   Rpal_1654 NONE
   Rpal_1653 NONE
   Rpal_1652 NONE
   Rpal_1651 1769971 .. 1769988 -  -7.7  -2.90075   GCTGGGTCAAGCAGA             TCAGCGC TGCC ACGCTGA              TGCGGACGGACTTCC  52 425
   Rpal_1649 1767449 .. 1767484 -  -8.3  -4.16016   CGAGGTCGCAACAAA    GACGTGGATGGCCGGG ACAAG CCCGGCCATG-ACGTA    GCTCAGGAACGAACT  76 52
   Rpal_1647 NONE
   Rpal_1646 NONE
   Rpal_1645 1761702 .. 1761736 - -11.4  -2.78384   TCGCGCTCGAGGACA    GCCGCAG-GGCGGTGC AAGAA GC-CCGCCGCAGCGGC    ATCGCGGTGTTCGGC  62 181
   Rpal_1638 1755832 .. 1755851 -  -4.3  -3.28924   TATCCGGCGGGATAA            TCCTG-CC TATTG GGTCAGGA            ACAGGCTGGCAGCAA  48 12
   Rpal_1628 NONE
   Rpal_1627 NONE
   Rpal_1626 1741050 .. 1741102 -    -5  -4.37502   ATCAGGATAGCAAAA GCGGGGCGAGATGGAAGCGCGCTG GATCAAAAG CTGCGCGCTTCCA-C--G-CCCGC AAAGATCAGGCCGGT  68 41
   Rpal_1625 NONE
   Rpal_1624 1738668 .. 1738689 - -17.3  -4.27316   TCCGCCAACGCAAAA           CGGCGGCTC GTAA GAGCCGCCG            TCTGAGATTCCGAAG 100 58
        nifH 1737346 .. 1737357 -  -7.2  -2.70932   CTCGTGCGGGAAGTA                CGCC GTCA GGCG                 CGGGGAGCGCAGGTC  52 39
   Rpal_1622 NONE
   Rpal_1621 NONE
   Rpal_1620 1733852 .. 1733885 - -16.8  -3.64882   TCAGGAGAAAGAAGA     GTCCGGCGACGG ACATGGCAAA CCGTCGCCGGAC      CAGATCTTGAGCGTG  91 42
   Rpal_1619 NONE
   Rpal_1618 NONE
   Rpal_1617 1731548 .. 1731560 -  -4.7  -3.01712   TCCGCCGCTTCAAGA                CGCCG GGA CCGCG                CTTTGTCCGGCTGTG  45 417
   Rpal_1615 1729967 .. 1730014 -    -9  -3.57144   GCGGCCATTTCGAAA TCCACGACGAGGCGAGATCGGG ATTT CCCGATCCTGCGCTGCCGCAGA AGATTTGTGTCGTGG  68 138
   Rpal_1614 NONE
   Rpal_1613 1727345 .. 1727363 - -17.4   -4.0162   GTCCGACACGACAAA             GCCCGCGC ATC GCGCGGGC             TTTTCTTTTCGCCAA 100 323
   Rpal_1606 NONE
   Rpal_1605 1719055 .. 1719081 - -17.3  -2.83345   GGGAGATAGGAAGGA        CGGCGGCGCCGC GGCT GCGGCGCCG-CG         CTGGCCTATTTGAAC  87 31
   Rpal_1604 NONE
   Rpal_1603 1714051 .. 1714069 -  -3.1  -3.28712   TGTGCTGCGCCACAA             GATCACC GCGAT GACGATC             TCGGCGGTGCTGACC  46 406
   Rpal_1596 1707619 .. 1707636 -  -9.1  -3.85878   CAACAAGATCAACAA             GGCG-GCG CTC CGCGCGCC             GTATTGGAGCGACAA  71 216
   Rpal_1594 1704981 .. 1704996 -  -3.2  -3.35046   CCAGCGCCTGAAACA              GGCC-GG AAC CCTAGCC              ACCAACTCTGCGCAG  46 228
   Rpal_1593 NONE
   Rpal_1592 1702893 .. 1702910 -  -3.3  -3.54129   CAGACGTTGTCGAAA             CGGATCG CGCT CATTCCG              CCCTCACCGCGGCGA  51 18
   Rpal_1591 NONE
   Rpal_1590 NONE
   Rpal_1589 NONE
   Rpal_1588 NONE
   Rpal_1587 1695203 .. 1695222 -  -4.2  -2.68434   TCGGACACTAGATCA            GGAGGC-CG TCT CGCGCCTCG            CCTTACCCGGCAAGG  41 28
   Rpal_1579 NONE
   Rpal_1578 NONE
   Rpal_1577 NONE
   Rpal_1576 NONE
   Rpal_1575 1684968 .. 1684980 - -10.5  -3.14344   GAGCTCGCCGAGGAA                CGCGC CAA GCGCG                CCCGATATCTGGCAT  62 112
   Rpal_1570 NONE
   Rpal_1569 1676628 .. 1676638 -  -8.2   -3.2048   TTCAAACTGGATTAA                 GCCC GAG GGGC                 AAGGTCACAGCCTTC  58 62
   Rpal_1567 1675255 .. 1675301 -  -9.3  -3.30124   TCTGATCTGCCACAA CCTGTCGGGGGCCACGGAGCAC GTCA GCGTTCCGTGGCC-CTGACGCG ATGACGAGGCAAGGC  63 115
   Rpal_1563 1658135 .. 1658146 -  -7.2  -2.52543   AGCGTCCTCAACTGA                CGGC TGCG GCCG                 GTACCGAACGCGGGT  50 6
   Rpal_1562 1656627 .. 1656654 - -12.7   -2.6162   CAACGTCTGAAATAC        CCGGGCAGAGC GGACCA GCTCTGCACGG         TTCTTTCGGCGCAAA  67 165
   Rpal_1543 1628839 .. 1628853 -  -4.2  -3.54424   CCGGATCGCGTTAAA               GAAGGT ACC ACCGTC               GATCGTGCTTGCTGC  51 158
   Rpal_1539 1625189 .. 1625216 - -17.8  -3.53712   ATGCCGAACAACGAA        GGGAGCGCCG-CA ATG TGTCGGCGCTCCC        TTTTGGTTCGATCTG  95 47
   Rpal_1530 NONE
   Rpal_1529 NONE
   Rpal_1528 NONE
   Rpal_1527 NONE
   Rpal_1526 1607258 .. 1607276 -  -6.6  -3.40639   AACTCTAGTAAGCAA             GGTAGCGA GGC CCGCTTCC             ACTGAACATTAAATC  57 284
   Rpal_1525 NONE
   Rpal_1524 1605076 .. 1605092 -  -7.9  -3.53811   TGCATTCCTTCGAAA              TCGGAGC GGC GCGCCGA              CGTCTCCGCCGGCAG  62 136
   Rpal_1523 1603872 .. 1603882 -  -6.8  -3.13403   TTGCCGGCATCAAGA                 TGCG GCA CGCA                 GGAGGGTGGGGCTGG  52 358
   Rpal_1506 1589779 .. 1589803 -  -4.9  -3.17319   TCGAATTCATCAACA          TGGTGGTCGAG CAC CTCACCGACCA          GGGCATCATGGACCC  48 215
   Rpal_1499 1581109 .. 1581131 -  -2.5  -4.09243   CAGACGTCGGCAAAA           CCCCGGTGA TTCCG CCGCCGGGC           AGCCCGGGAGGCGAT  58 371
   Rpal_1495 NONE
   Rpal_1494 1576265 .. 1576285 - -15.4  -3.22298   CTGATCGAGCAGTAA            GCGCCCGG CTAAT CCGGGCGC            GCGGCACCGTCACAT  83 35
   Rpal_1492 1574732 .. 1574756 - -17.1  -2.96731   ATAAGCGAACAACGA          CCGCGCCGGTG GCT CATCGGCGCGG          TTTTGATGCGAGAGG  87 117
   Rpal_1489 NONE
   Rpal_1488 1570900 .. 1570935 -  -3.9  -4.38843   GAAAACAGCAAGAAA    GGCGTGGATGGCCGGG ACAAG CCCGGCCATG-ACGAA    ACTAATCGTCAATTG  66 119
   Rpal_1485 NONE
   Rpal_1484 1564665 .. 1564682 -  -6.9  -3.14132   GCCCTGTGCCATGAA             GCTCTCG TGGT CGAGGGC              TGCGCTTGCCGACCT  53 390
   Rpal_1479 1558745 .. 1558762 -    -4  -3.14132   CTTCGCCGGCACGAA             CCGGGC ATGACA GCCCGC              CGACGTTTGGATAGC  47 494
   Rpal_1477 1557769 .. 1557789 -  -2.6  -3.40639   AAGCCGACGAAGCAA           GCC-AGCTAC CGA GT-GCTCGGC           GTATCTGGATTGCTT  47 84
   Rpal_1475 NONE
   Rpal_1474 1556046 .. 1556076 -  -5.3   -3.7282   CGAGGCGAGCAACAA      CGTCGTGGCGATGC CCAA GCG-CGCCGCGACA       GGCTGAAGCCTAGCT  58 145
   Rpal_1470 1551980 .. 1552001 - -18.7   -2.5511   GATGATATGAGTAAG           GCCGCCGCG ACTA CGCGGCGGC            TTTCTTCGCGCGCAT  87 14
   Rpal_1469 1551033 .. 1551078 - -12.5  -2.71483   AGACTCCCCCAAGCA CAGCGAGCTCCCTCTCCCCGCT CTT AGCGGGGAGAGGG-GTGGGGTG AGGGGCGACGCAGGC  68 180
   Rpal_1467 1549252 .. 1549263 -  -5.8  -3.30124   GCTCACGGTGCACAA                GAGC CAGG GCTC                 GCAATGGGATGACGT  51 230
   Rpal_1464 NONE
   Rpal_1463 1546494 .. 1546506 -  -3.4  -3.70902   GCCGTCAGAGTCAAA                TCGT CAGCT ACGA                AAATCCAGTCGCCGC  54 16
   Rpal_1462 1546210 .. 1546248 -   -13  -2.57239   AAGATCGAAAGACAC   GCCGCCCGAGGACGCAAG GCA CCTCCATCCGCGGCCGGC   TCCCTCGCCCGCTCT  67 64
   Rpal_1455 1539131 .. 1539144 -  -8.1  -3.09516   GGCGGCATCAGGGAA               GAGGC AGAA GCCTC                GTCAGCACATCTCGA  54 496
   Rpal_1450 1532360 .. 1532370 -  -8.2  -4.72272   TTCGGGCATCAAAAA                 GCCG GCC CGGC                 TGCAGACCCGCACCA  86 208
   Rpal_1442 NONE
   Rpal_1441 1520807 .. 1520856 -  -7.8  -3.59262   TCGCATAGCGCCAAA CCG-GCCGTCGCCACCGTGGCG TTGGGTGG CGCC-CGGTAGCATCGTCGCGG CGCTGAGCTGGCTCG  60 231
   Rpal_1435 1515071 .. 1515090 -  -3.4  -2.74144   GCTCGATGCCGAAAC            CATGGCGA TGAT CCGCCGCG             CCCAGCCACTGCCGC  40 128
   Rpal_1431 NONE
   Rpal_1430 NONE
   Rpal_1429 1509377 .. 1509397 -   -14  -3.84451   TGTCTCAAACCCAAA            TGCCCGGC CTCGC GCCGGGCA            TTTTTCTTTCTAGGA  86 162
   Rpal_1416 1495315 .. 1495333 -  -3.9  -3.72324   CACGCGGACGAAGAA            GATGACCG CCCG CGGT-ATC             CTAGCAGATTTACGC  56 91
   Rpal_1415 NONE
   Rpal_1414 1493126 .. 1493159 - -10.3  -2.74756   AAAGCATGCCAAGGA     GCTGGCG-GACGAAAA GCA TCACCGTCTCGCCAGC     GACATGCTGGCGTCG  57 406
   Rpal_1412 1491287 .. 1491305 - -13.1  -5.06414   TCCGCCCAACAAAAA             GCCCGGC GCGAA GCCGGGC             TCGATTGGCGGGGTG 100 73
   Rpal_1410 1487645 .. 1487657 -  -9.1  -2.95476   ACGACGGATCAGATA                GCCGA GCA TCGGC                GCTCCATCATGGATT  58 186
   Rpal_1409 NONE
   Rpal_1408 1485786 .. 1485818 -  -5.6  -2.87132   TGTGGGGCTGAGAGA     GCAGAC-ATGATGAG CTGC CTCTTCATCGGCTGC      CCTCGCGCTGTTTCA  48 15
   Rpal_1407 1483961 .. 1484000 - -11.5  -3.08133   CACGTAGTGAGCGAA  CCCGGAATCCCGAGGTT ACGGGG AAGATCGAGATTCCGGG   TTCGCGCTACGCGCG  66 72
   Rpal_1406 1482305 .. 1482333 -    -3  -3.64198   TTCGCATACATAGAA        GCGCGCGCACGA TCGAC TCGTGCATGCAT        GATAGTCCAGTGACC  51 98
   Rpal_1405 1481030 .. 1481056 -  -2.9  -3.15861   CATGACCGTCACCAA        CCTCCGCAG-TG TGAG CAGCTGCGGCGC         AGCCCGATGAGGAGC  44 160
   Rpal_1404 NONE
   Rpal_1403 NONE
   Rpal_1402 NONE
   Rpal_1401 1475781 .. 1475802 - -11.5  -2.71791   ACTGCCCGCCGAAAT           CACCGCGGC GGCC GGCGCGGTG            GAGAGTCAGGTTTCC  62 243
   Rpal_1399 1472245 .. 1472290 -  -7.4  -3.05844   GTTTCCAGGGCAATA CCCTGCTGT-CCGGACGGCGC AGGAA ACGCCGTCCGGTATTGCTGCG AGCGAGTGCTTTGCA  54 66
   Rpal_1398 1470529 .. 1470581 -  -7.6   -3.9461   CGGCCCGAACAATAA CGGCGA-GCCGGTGACGATCGCGCGC GAT GC-CGCGGTCGCCAAGGGCGTCGTCA TCAACGGCCTGCCGA  68 434
        clpS 1469396 .. 1469423 -  -6.3  -3.21276   TTGTCCTGCAGAAGA        TGGATCGCCGGG TCGAG CCCGGCGATG-A        TGCTTTTCGGATAGC  53 74
   Rpal_1389 NONE
   Rpal_1388 1461693 .. 1461705 -  -5.5  -3.67597   CGCCGCACGCAACAA                GACCG ATG CGATC                GTCTGCAACGCCCCG  57 135
   Rpal_1383 NONE
   Rpal_1382 1456469 .. 1456484 -  -7.5  -2.78816   CGATTCGTCATGACA              GCCGG ATCACG CCGGC               GCGAGCTACCTGATG  52 31
   Rpal_1381 1456127 .. 1456158 - -10.8  -4.07568   GGCTCGTCCGGAAAA      TACGCGACCGCG TGCTGATC CGCGGCCGCGTC       AGTTATGGCGAAGAC  82 52
   Rpal_1376 NONE
   Rpal_1375 NONE
   Rpal_1374 NONE
   Rpal_1373 NONE
        hisS NONE
   Rpal_1368 1439905 .. 1439954 - -12.2  -2.78715   AATTGCCCTACCACA CTCTCGTCATTCCGGG-GCGCCGC GTGA GCGGCGAACCCGGAATCCCGA-AG TGATCAGCGAGCCAT  66 113
   Rpal_1367 1439430 .. 1439452 - -14.8  -3.29511   CGCACGGGTTTAGAA           CGCGCTCCTC ATC GAGGGGCGCG           TTTGTTTTTGCAGCA  82 51
   Rpal_1365 1437751 .. 1437770 -  -2.8  -3.76839   GAAGCGGAACGTAAA            GCCAGTCC AATG AAACTAGC             ATAATACGGAATTTA  54 102
   Rpal_1364 1436979 .. 1437003 -    -5  -3.61715   GATCTTTGCGAACAA         GGTTCGCGAAG CAGC CTTCGAGA-CC          AAGAAACTTGGATCA  55 380
        uvrC 1433833 .. 1433847 -  -4.9  -2.85768   AGGAAAAGGTGAAAT               CCGCA TTGGG CGCGG               CCGCCTTCGGCGCCG  46 69
   Rpal_1361 NONE
   Rpal_1360 NONE
   Rpal_1359 NONE
   Rpal_1358 1431368 .. 1431378 -  -2.4  -3.96148   CCTGCCGACTACAAA                 TCCG CCG CGGC                 GATCCAGAATACTTC  54 8
   Rpal_1355 1427175 .. 1427185 -  -6.8  -3.60296   GATTTCTACGTCAAA                 GCCA AGC TGGC                 GAGCTGGACGCGGGC  58 370
        xseA 1423212 .. 1423242 -  -9.8  -4.08216   CGATCTCCTGGAAAA      CCGCAG-GTTGCG GAACGA CGCAACGCTGCAG       GTCGATACACCTGAC  78 123
   Rpal_1351 1422801 .. 1422815 -  -4.2  -4.68593   GTCACGACCGAAAAA               GATCTG GCG CGGATC               GGCCGCGCGCAGCAG  73 176
   Rpal_1345 1416921 .. 1416934 -  -8.1  -3.04792   TCAGGACGCCGAAGA               CGACC TGAT GGTCG                GAATCAAGTCGACTG  53 349
   Rpal_1342 1414537 .. 1414571 -  -8.6  -3.03124   GCGCAGCCCTTAACA    CG-GGTGGATGACAG ATTCGA CCGTCATCCGCCGCG     GTTCGAAGGGGCGGG  57 65
        hisZ 1413311 .. 1413329 -  -4.5  -2.66452   ACCGCGAGAACGAAC            GGCG-CGC TCAT GCGGCACC             TCCGGCGCTTGTCTG  41 14
        hisG NONE
   Rpal_1339 NONE
   Rpal_1338 NONE
   Rpal_1337 1409295 .. 1409319 - -15.7  -3.40403   GCCGTCTTACGACAA          CGGCCGCCC TTTTTGG GGGCGGCCG          TTGCGCGTTGGCGGA  85 53
   Rpal_1335 NONE
       groES NONE
       groEL 1403262 .. 1403287 - -20.5  -4.56597   GTGCGGCGCCAAAAA         GCAAGGCCGCC CGGA GGCGGCCTTGC          ATGATCGATCTTCAG 100 57
   Rpal_1330 1401828 .. 1401852 -  -2.7  -3.19192   TGCCATCCAAGGGAA          GCGCTTCATTG CCG CATTGCAGCGG          CATGTCAAATCGCGG  43 84
   Rpal_1329 1399844 .. 1399866 -  -3.4  -2.70946   GTTCGCGATAAACAG          CGGACCGTC CTGAAC AACGG-CCG           AGGCACCATGCACTG  40 452
   Rpal_1326 1395949 .. 1395971 -  -6.9  -2.61873   AGCACGGCGAAAGAG          CTGCGG-CGG ATTA CCGACCGCGG           ATAGCCACTCCCGAT  48 88
   Rpal_1302 1370451 .. 1370478 -   -12  -3.05384   TCGTCGCTTACGGAA        GCGCCGCCTGC GTTGTTT GC-GGCGGCGC        TTCGTTCGTTGGCAC  68 58
   Rpal_1300 1368786 .. 1368802 - -10.1  -3.35679   GGCGCTGATCGACAA              GGCGATG CGT CACCGCC              GCACCGGCGCGTATC  65 453
   Rpal_1288 1359429 .. 1359452 -  -7.4  -3.23447   GGAAGCCGCAGAACA          CGGTCGCGGTC GAC GAC-GAGACCG          GCGAGAAGCTGTTCA  56 181
   Rpal_1286 1356532 .. 1356574 -  -2.6  -2.78816   CGATGCCGGACTACA TGGCGTCGCTCG-AGCGGC TGATCG GCCGCGACGAACAACTCTA TCTCTCCGGCCACGG  38 319
   Rpal_1278 1350815 .. 1350842 -    -9  -3.71378   GACGGCATATTGAAA        CCGACGTGCCGA CGAA CCGGCACGGCCG         ATCACGGCAGGCGGT  71 27
   Rpal_1271 1344937 .. 1344966 -  -9.2  -2.54812   ACGCACATGATGAAC       GTCGGCGAGCTG CTCGAC CTGCTTGCCGAC        TGGGTGCCGGATGCG  54 407
   Rpal_1267 1340547 .. 1340561 -  -5.6  -3.61178   GCGACCGATCCGAAA               CGCGTC TTA GACGCC               TTTGGATTGCTTCGT  57 79
   Rpal_1266 1338925 .. 1338948 -  -4.4  -3.09834   TATCGGACTACGCAA          CTCCAGAGCG CCGG CGCAGCGGAG           CTGCCTCGCCGGTCG  47 146
   Rpal_1262 NONE
   Rpal_1261 NONE
   Rpal_1260 NONE
   Rpal_1259 1335655 .. 1335685 -  -8.2  -3.92324   GTGGTTAACAGGAAA       GCAACGCAACAGGC GCA GCATTTCGCGTCGC       ACGATCGCCGGGATC  71 251
   Rpal_1256 NONE
   Rpal_1255 1331886 .. 1331907 - -12.3  -2.79501   GACAGCTTGAGTAGA           TGCGCCGCGG CGT CCGCGGCG-A           TGTGACCGCCATATA  66 328
   Rpal_1253 NONE
   Rpal_1252 NONE
   Rpal_1251 1329626 .. 1329648 -  -3.3  -3.18728   AGCTCGAACATCCAA           CCTCCAGGC GAGCG GCCCAGATG           GCGGGGCGTTTCGCT  44 50
   Rpal_1250 1326944 .. 1326963 -   -10  -3.10715   CTCATGATCAGTTAA            GCCTCCGCC GAT GGCGGAG-C            TTGCAATGGCGCGTC  62 2
   Rpal_1247 NONE
   Rpal_1246 NONE
   Rpal_1245 1321123 .. 1321147 -  -2.8  -2.66274   CCGCTGAGAACTAAC          CATCGACG TTTCGGGGG CGTCGGTG          CCAGACTACGCATCG  39 31
   Rpal_1241 1313761 .. 1313775 -  -5.6  -3.47349   GGTGCAAAGCTACAA               GGCGAC CAC GTCGCT               GCTGTCGATGCTGAA  55 64
   Rpal_1232 1304322 .. 1304370 - -17.3  -2.53822   CGCAGTTCAGAACAT CTCGGCATTCCGGGTTCGCTCGC TTT GCGAGCGCCCCCGGAATGACGTT GCTTGTTTGAGGAAG  83 53
   Rpal_1228 1298314 .. 1298356 -  -5.6  -2.87132   GGCGGGCTGCAGATA CTGCGGGCAAGCCGCCGGACG ACAT CGCCCAGCG-CTT-CCCGG-G CATCGTGCCGGAGCT  46 184
   Rpal_1224 1293963 .. 1293975 -  -6.3  -3.68738   TCGTCAACAAATTAA                TTGCT AGA AGCAA                CTATTTGGGCGGGGC  62 77
   Rpal_1223 1292811 .. 1292850 -  -8.5  -3.16564   CCGCCACCGGAGCAA GGCTCGCGCGGCG-GCTGC GATC GCAGCGCGCTGCA-GCGCC  CGTCCACGCCTGGTG  58 96
   Rpal_1218 1287924 .. 1287954 -   -17   -3.6581   ACCACGGCCAAAAGA       GCTCCGGTTCTGAT TGG ATCAGAACCGGAGA       AACTTATTTGCGTCA 100 38
   Rpal_1210 1280041 .. 1280068 - -11.2  -3.39895   GCCGCGACGAACCAA        TCCAGGGCCCCG TGCT CGGTGCTCTGGA         TTGCTTTGCTACGCT  71 120
   Rpal_1206 1277562 .. 1277585 -  -5.2  -3.53012   CGTCTCCGGGCGAAA          TCATGCGGGA TCAG TCACGCAGGA           TCGAGACGCTCTCGT  53 62
   Rpal_1205 1275712 .. 1275725 -  -9.5  -3.09516   TCGTTCATGACGCAA               GGCGG CGGC CCGCC                GTATCAGGTCTATAT  59 361
   Rpal_1202 1272255 .. 1272271 -  -2.1  -3.54543   AGCCATCCCGCGAAA              GTCCGAT TGG AGCGGCC              GTGGTCTCAGGTCAC  49 32
   Rpal_1200 1269909 .. 1269942 -  -4.5  -3.42663   ACTACTACGCAAAGA     TCGTCAA-GCCCGGGC TTG ACCCGGGTATCCACGA     AATTGGGCAAGGCAG  51 95
   Rpal_1195 1265554 .. 1265564 -  -5.4  -3.90843   AACTAACCACAACAA                 CATG CGT CATG                 GCCGGGCTCGACCCG  60 136
   Rpal_1193 NONE
   Rpal_1192 1263440 .. 1263452 -  -4.8  -3.64703   CTGGTTGGATGGAAA                CCGA AGTAA TCGG                CGGTCAATCGTCCAT  55 29
   Rpal_1190 1262163 .. 1262196 -  -2.4  -4.40003   CGCGACAAAGACAAA    CCTGCTGCAGC-TTCG CGCG CGAAAGCTGC-GCCCG     CGCCACGCCGTCAGC  65 74
   Rpal_1188 1260661 .. 1260681 -  -2.4  -3.40788   AGCGAAGCGAAGCAA            TCGAGGGC CCCGT GCCCTGGG            CTGGATTGCTTCGTC  47 79
   Rpal_1187 1259136 .. 1259153 -  -9.8  -3.55622   GCGAAGTGTCGGAAA             GCGGCG ACTGAA CGCCGC              CACCGGCGCCTCCGC  70 83
   Rpal_1184 1256771 .. 1256795 - -12.8  -3.31792   CGATGATGCCGACAA          GCTGCGGCAG CGGGC CTGCCGCTGC          AACGAGGCGATCAAG  71 125
   Rpal_1182 1252825 .. 1252846 -  -8.7  -3.02144   TGACTGGGCTCAAGA           CCTACGCGCG GGC CGC-CGCAGG           TCTCGGCTACGTGCC  55 511
   Rpal_1174 1244379 .. 1244398 -  -3.4  -3.61715   CATGCCCGGCAAGAA            CGGCGTCG AACT CGCCACCA             TCATCCGCGAGCGCT  49 225
   Rpal_1145 1214268 .. 1214285 -  -4.8  -3.91984   ATAGCCGCGAAATAA             TCCGGG AAGACG CCCGAA              ATCGGCGGCAGGTTG  60 162
   Rpal_1143 1212711 .. 1212723 -  -3.3  -3.78934   GGTGCTGGAGAAGAA                CGTGC GCG GCAAG                GACGGAGCCGAACTC  56 477
   Rpal_1139 1208688 .. 1208718 -  -4.6   -5.0133   GACTCGCTCAAAAAA       CGGGGCTACCGT TGGAATG ACGGCAGCGACG       GCAGACCCAATTCCT  83 181
   Rpal_1131 1203421 .. 1203444 -  -2.4  -2.83403   CCGCGCCCATGAAAT          CAAACCCCTT CGAA AATAGGCTTG           TAGCGCTTCGATCGG  40 1
   Rpal_1130 NONE
   Rpal_1129 1201934 .. 1201951 -  -3.3  -3.05384   TTCGGTTTCAGGCAA             CTGCGACC GCC GG-CGCCG             GAGGCGGATCCCCGC  43 0
   Rpal_1128 1200628 .. 1200659 -  -2.9  -3.72407   ACAAACTCCAAAAGA      TCTACCGCCCG CCCCAAGTTC CAGGCGGCGGA       ACGGTGCCGGAAGTG  53 496
   Rpal_1118 NONE
   Rpal_1117 NONE
   Rpal_1116 1184656 .. 1184677 -  -2.2  -3.39803   CACCTAGACCGAGAA           GCC-TCGCG ACTTG CCCGATGGC           GGACTGTGCGGAATC  47 237
   Rpal_1114 1179964 .. 1179995 -  -7.2  -3.85698   CCCGGTTGCGATAAA      GATC-CGCGCGCCCG CCG CGAGTGCGCGTGATT      TGGGAAATGTTCGTT  68 89
   Rpal_1112 NONE
   Rpal_1111 1178893 .. 1178917 -  -7.8  -2.66634   GAGGCGATTACACCA         TGCG-TCGCGG CGTC CCGCGAGCGCG          ACATGCATGCTGATT  51 55
   Rpal_1106 1172517 .. 1172544 -  -4.9  -3.53012   CCGCGCTCGTCGAAA        TGGTCGGTGTCG GCGCG CGA-ACCGAGCA        GGAACAGGTTGTCCG  53 164
   Rpal_1105 1171478 .. 1171493 -  -4.6  -2.72855   CAAAGTGTTGAACGA              GTACGG TTGC CCGAAC               TCTTTATGGACGCTG  44 130
   Rpal_1104 1170029 .. 1170041 -  -6.9  -3.28712   CTGTTGGGGCTACAA                CGCGA GTT CCGCG                AGCGGGGTCAAGTGG  55 205
   Rpal_1103 1168953 .. 1168967 -  -2.1   -3.9941   GCTGCCACAAGCAAA              CG-CTG CGGC CAGTCG               CGCTCGATCGACCAT  57 504
   Rpal_1102 1168064 .. 1168076 -  -3.3  -3.05384   CGCCCTTGCACGCAA                GTCGA TCG TCGGC                GGGAGCTCAAGTCAT  43 37
   Rpal_1101 NONE
   Rpal_1100 1166257 .. 1166270 -  -3.7  -3.40403   CCTTCCGTATGACAA               GCGCG CCTC CGCGA                CGTGCGGGAGCCGTT  51 66
   Rpal_1096 1162362 .. 1162378 -  -7.9  -3.14051   TGATCCGGAGCAAGA              CGGCCGA GCT TCGGCGG              CGGGCGATCCGCAAC  56 146
   Rpal_1088 1155071 .. 1155093 -  -5.5  -3.57144   GGTGTGACCGGGAAA          GCTTC-CGCC AACT GGCGAGGAGC           GAGCTGACCAAGCCC  57 225
   Rpal_1083 1147775 .. 1147789 -  -2.7  -3.53091   AGTCGGCTGCCGAAA               CGGCG GATCA CGTCG               TCCTCTGATACGTGT  47 18
   Rpal_1079 1144910 .. 1144940 - -15.6  -3.27298   CCGCCGAAGGAGGAA       GTGATCCGACGA TGTTAGT TCGTCGGATCAC       TGCTTCACAATCATT  84 36
   Rpal_1077 1142392 .. 1142407 -    -6    -3.737   CAATGCGGGACGAAA              CCGCTC GTGA GGGCGG               CAGCTCTACCTCCAG  60 88
   Rpal_1074 1139418 .. 1139441 - -15.3  -2.57132   CGCGCGCCGGAGAAG          CGCTCGCCG TGATGC CGGCGAGCG           AAGTTGTTGATCATC  77 288
   Rpal_1064 1129767 .. 1129782 -    -9  -3.14931   CGGATCGGTTAGCAA              GCTGGT CCAG ACCAGC               TACGGCCAGATACTC  61 312
   Rpal_1057 NONE
   Rpal_1056 NONE
   Rpal_1055 1123705 .. 1123722 -  -4.1  -3.07443   CGATAGCGCATTGAA             CCAAGGA AAAT TCATTGG              CGTTCAATCCACTTC  45 19
   Rpal_1054 1123417 .. 1123431 -  -2.1  -2.52896   TGAGCGGTGAAGTCA              CG-GAG TGAC CTCTCG               AACGCGACGCAGGAT  37 8
   Rpal_1053 NONE
   Rpal_1052 NONE
   Rpal_1051 NONE
   Rpal_1050 NONE
   Rpal_1049 NONE
   Rpal_1048 NONE
   Rpal_1047 NONE
   Rpal_1046 NONE
   Rpal_1045 1112158 .. 1112178 -  -2.4   -4.2679   CAATCGCCATGAAAA            CAGGCGTC AATTG GCCGCTTG            ACGGTATCGCACCTC  62 11
   Rpal_1044 1110334 .. 1110346 -  -4.7  -4.30576   CCGCGACGATCAAAA                GTCGG CGA CCGGC                TCGGCCTTTGGTCCG  68 289
   Rpal_1040 1104995 .. 1105010 -  -2.4  -3.48276   CCCCTGTCGACACAA              CGGCCG CACT CATCCG               ATCGTCGTTGACGAT  47 40
   Rpal_1039 1103279 .. 1103292 -  -3.1  -2.78384   GTGCGTTCCATCAGA               CCATCC TCC GGA-GG               TTGTCGTAGCGGGCA  40 7
   Rpal_1038 1102239 .. 1102253 -    -7  -3.30124   CGCCACCTTCGAGAA               GCTGCG CCG CGCCGC               CCCCGAACGACTGGT  54 183
   Rpal_1028 1091981 .. 1092003 - -19.2  -4.83243   TGCACACAAAATAAA           GGGTGGCTGC GAC GCAGCCACCC           CGGAGTTCTTCGTAA 100 55
   Rpal_1027 1091023 .. 1091071 -  -7.4  -4.58395   CGCACCGGGGAAAAA GTAATCAGCTCGGCTGCGGCACCC GGC GGGTGCCGCA-CAG-GCTCATGCC TTCTTCCGCTGGAAG  83 19
   Rpal_1025 1088619 .. 1088641 -  -2.6  -2.80975   AGCGACGAGCGAAAG           GGCCGCTTAA GGC TTAGCCAGCC           GCAAGCTTAATTCAA  39 32
   Rpal_1024 NONE
   Rpal_1023 1086975 .. 1087012 -  -9.3   -3.9712   CTACGTCAGGAGAAA   TCAACGATC-GAAGCG TGATGTG CGCTCCCGATCGTCGA   AGTGACCTCGATCAC  76 292
   Rpal_1022 1084738 .. 1084758 -   -14  -2.64155   GTGGGTGCAAATTCA            CCCTCCCC TGGAG GGGGAGGG            TCGCTCGCGGAGCGA  71 206
   Rpal_1021 NONE
   Rpal_1020 1083349 .. 1083362 -  -5.2  -2.78463   ATGGCGCGCACCATA               GCCG AAGTTG CGGC                CGGAGTAAGACTTTG  44 73
   Rpal_1019 1081912 .. 1081928 -  -3.6  -3.55444   CCGGCAGGCCGTAAA              GCCGGA AGTGA TCAGGC              GGCGACGGCCGCGGC  51 20
   Rpal_1018 1080565 .. 1080580 -  -2.5  -3.59262   CCCGACATGTTGAAA              TGCCG GTTGCT CGACA               GCTCCAGATTCCGGT  49 80
   Rpal_1015 1077396 .. 1077419 -  -2.4  -4.56597   GCCGCGCCTGAAAAA          CT-GCGCGATC CTT AATCGCCCGAG          TGTGGGCGCCGAGAT  68 42
   Rpal_1014 1076121 .. 1076134 -  -8.1  -2.59564   GCCCCATGGGAGAAG               CGGGT AATC ACCCG                AGCCTGGTCCATGAG  53 104
         pgk 1074740 .. 1074754 -  -5.6  -3.13788   ATGTAACGCAAGATA               GGCTCC GGT GGAGGC               GGTCGCAAGCCGGCG  51 66
   Rpal_1012 NONE
   Rpal_1011 1074027 .. 1074040 -  -3.8  -2.52543   ATCTGGTTCAAGTCA               GCGA GGTTCA TCGC                GTCTCTCCTTTGGCT  41 77
   Rpal_1010 NONE
   Rpal_1009 NONE
   Rpal_1008 NONE
   Rpal_1007 1070268 .. 1070285 -  -4.1  -2.52516   CGCTCGACGAGGAAG             CGGCC-GA GGC TCTAGCCG             AAAGGTTGCTGAAGA  41 77
   Rpal_1005 1067980 .. 1068010 -  -7.5  -4.14627   TCTCTACACAAACAA      CCGTCACCCTCCGC GCAA GCGGAGGGCC-CAG       TACGGCCGTGCGCTG  72 365
   Rpal_1001 NONE
   Rpal_1000 1062849 .. 1062877 -  -7.3  -3.19026   TATCTGAAGACCGAA        CGCGCCGGCGA CTTCTTC CCGCTGACGCG        CGACGTCGATCTGCG  52 316
   Rpal_0998 NONE
   Rpal_0997 1061447 .. 1061489 -  -6.1  -4.19238   GCGCCAACTTGAAAA TTCGAAGGCCGGCACCTGC GCCCT GCAGCTGCCGGCCTTTTCT TATTCGCTGCTACTT  67 35
   Rpal_0992 NONE
   Rpal_0991 1056451 .. 1056477 -  -5.1  -2.97029   GCTGATCAACCAAAT        GCTACGTCACTC CGGG GCGCG-CGTAGC         GCGAACCCGGAATCT  47 120
   Rpal_0990 1055642 .. 1055690 -  -8.8  -3.28001   GACGCCGAAAGCGAA GTGCTGGTGCAGACCGCGCTGCAG CAG CTGATGCGCGACC-GCACCA-CGC TGGTGATCGCCCATC  58 324
        rpmE 1053438 .. 1053457 - -16.4  -4.27316   TCTGCCAACGCAAAA            CGCCCCGC GCGA GCGGGGCG             TTTGTCGTATTGGGT 100 84
   Rpal_0985 1051014 .. 1051039 -  -2.5  -3.75933   ATAGATGCCATGAAA         GCGAGCGAA AACATAGA CTCTCTCGC          CGGCCCCCGGGGTAG  52 47
   Rpal_0984 1047771 .. 1047826 -  -3.2  -4.17914   CATCGAAGAAAAATA CGACCGCGCGCTG-CA-CAAGCTCGGC ATCGA GCCGGGGATGCTGTCAGCG-GAGGCCG GGCACGCGTAGGCCC  61 258
   Rpal_0982 1045955 .. 1045967 -  -4.7  -3.61398   GCTGCGGGTCAACAA                CGGCG AGG CGCTG                CTGCCCTCGGTGATC  52 274
   Rpal_0980 1044394 .. 1044421 -  -6.3  -2.75074   TTCAGGTGAAGAGGA        TGGATGGCCGGG TCGAG CCCGGCCATG-A        CGGTGGTGATTGGCG  49 51
   Rpal_0979 1043634 .. 1043685 - -15.8  -4.26076   GCATCTGCATTAAAA TTGACCGGAGGGCGGCGGGGCGC GGTCTAG GCGCCCCGCCGTTC-CCGATCAG CCGTGCAGCTTGATG 100 22
   Rpal_0978 1043315 .. 1043335 -  -2.4  -3.05596   GAGGCGCTGAGGGAA            GCAGGCGG CAATT CCGCGTGT            CGCCGTCGGGAGCGG  41 68
   Rpal_0975 1041138 .. 1041150 - -10.5  -3.19212   ATGAGCGAGAAGACA                GCGGC CCG GCCGC                CCGCCTGTTTACTCT  64 34
   Rpal_0974 1040349 .. 1040376 -  -7.6  -3.03159   GGAATCGTCCGAAGA        CGCGGT-GCGGGC TTT GGTCGCGACCGCG        TCCATCTCATTGATC  54 487
   Rpal_0973 1039198 .. 1039229 -  -5.7  -3.97947   GCGATCGAGCAGAAA      GCGATCGCGCCGA TTCCGG TCGAGGCGGCCGC       GAAGCTGCTCGGCGC  63 153
   Rpal_0970 1037386 .. 1037402 -  -3.5  -3.21912   GCTGCAATGGATCAA              TCGCGGC CTT GGCGCGC              TGTTCGTCGCGCTCG  47 86
   Rpal_0968 1035157 .. 1035176 -  -4.8  -3.44527   GAGCGACGACGACAA            CGGGGGCG GCGC CGACACCG             AGCGCGCAGCAGTAA  53 79
   Rpal_0967 1034744 .. 1034763 - -10.6  -5.45652   AGCTGCAACAAAAAA            CCCCGTCG AAAC CGGCGGGG             TTGGGTGCATGCGTG 100 225
   Rpal_0966 1033727 .. 1033767 -  -8.9  -2.57132   CGCCGGCTCCATAAG GCGGTCCCGGTCG-CGCCC GTCAA GGGCTTCGGCCGAG-CCGC ATCGGACCGCTCAAG  53 36
   Rpal_0965 1031697 .. 1031712 -  -5.4  -3.25823   GCTGGTCGATACCAA              GATGAC CAAG GTCACC               ACCGACAATCCGAAG  51 259
   Rpal_0963 1030135 .. 1030190 - -18.2  -3.29511   CTCAGGGCGGCAGAA CGCTTCGGGGTTCCGGGTTCGCGTAGC TGT GCTACGCGC-CCCGGAACGACGGTGCG GTGGGGGCGAGGAAC  93 59
   Rpal_0962 1027390 .. 1027419 -  -9.3  -3.65902   TTGAGCGCAGCGAAA       CCCATCACCGC CTCGCCGC GCAGCGATGGG        TTTCGCGTTGCTCAA  68 306
   Rpal_0958 1018806 .. 1018836 - -20.5  -3.06501   TAGACCCCTAGCCAA      GC-AGGCGCCCCGG GCAA CCGGGGCGCCTTGC       TGTTGGGAATATCAT  93 87
   Rpal_0956 1017079 .. 1017097 -  -5.8  -3.57561   TGTGAAGTTCCGAAA             CGCGGCGC GAA GCGTCGCC             GGAGACAGAATGTCA  57 43
   Rpal_0955 1015642 .. 1015654 -  -9.1   -3.1355   GCGATCGACACCGAA                TGGCG CCG CGCCA                TCCGGCAGAACACGC  59 487
   Rpal_0953 NONE
   Rpal_0952 1012805 .. 1012841 -  -8.6  -2.78816   CCAGCCGCGAGTACA   GCGCGCTCCCTCTCCCG CTTG CGGGAGAGGG-GTGGGG    TGAGGGCGACGCGGG  54 195
   Rpal_0951 1011901 .. 1011916 -    -6  -2.60423   AGGCGAAGCAATCCA              GGCCTC ATCC GCGGCC               TCTGGATCGCTTCGT  46 77
   Rpal_0950 1010940 .. 1010977 -  -7.7  -3.54424   CCGCAGTTGCTCAAA  CCGATCG-CGCGCCGGG TGCTGG CCCGGC-CGTCGTTCGA   TGCCGCTGGCGAGCC  60 55
   Rpal_0947 1006866 .. 1006882 -  -5.7  -3.05384   GCGCTGGGTATCGAA              CCCAGGC ATG GCGCGGG              GAAGAGCCTGCGACC  49 98
   Rpal_0946 1005506 .. 1005521 -  -3.2  -3.30124   GTTCACCCTGGAGAA              GCCG ATCGAGGG CGGC               GTCGGAACGGTGCGG  46 249
   Rpal_0939  997788 ..  997840 -    -5  -3.56727   GGCAATGAAGGACAA GCCTCTTCGGTATTCGCGCCGGCT GATGGAA AGCCGGCA-GAG-ACCAAAAAAGC CCGCTCCGTCGTTGC  55 468
   Rpal_0938  996309 ..  996362 -  -3.5  -2.53263   GCGACGTTCAAGGCA GTCAGGGAGGCGAGGGTGTTCGTCAT GGC ACGTCGATC-CCCACGCCGCCCGGTG CGAACACCGAAAGGC  39 140
   Rpal_0937 NONE
   Rpal_0936  995523 ..  995541 -  -5.9  -3.09516   TGGGTGAGCAGCCAA             TGCCGCG TCTGT CCCGGCA             AATCAAGCCTTACAC  49 62
   Rpal_0935  995067 ..  995092 -  -7.4  -2.52464   TGTTGCGTGAAGTGA         GTGGTGCGGC ATTTTG GCCGCCCCGC          GTCAGCTCCGGCGCT  50 27
   Rpal_0934 NONE
   Rpal_0933  992751 ..  992794 -   -16  -3.05463   AGGCTCGCCACTCAA CGTCATTCCGGG-GCGCGAGC GCA GCTCGCGAACCCGGAATCCCG CGGTGTTCGGGCAGG  84 86
   Rpal_0925  985254 ..  985274 - -15.4   -5.0925   TTCGAAAATGAAAAA            GGGCCGGC GCGAG GCCGGCCC            TTCCAACTTCCGAAG 100 58
   Rpal_0924  982905 ..  982930 - -21.9  -4.66163   ATCTGGACGCAAAAA         GGGCCGGTGGC GCGC GCCACCGGCCC          TTTCCTTCATATCGT 100 48
   Rpal_0923  981585 ..  981621 - -12.3  -3.09516   TCTTCCATCACCGAA    GTCGAGGCGCAATTCGA CGA TCGAGCTGCGCCTCAAA    GCGATCCATATCACC  68 127
   Rpal_0922  980189 ..  980239 - -24.6  -4.28361   GCAAGTCTACCAAAA CAGAAGGGGCGCCTGCGACAGGGA TTT TCCCAGCCGCGGGCGCCCCCGCCG AAAATCATTACCGCG 100 59
   Rpal_0921  976467 ..  976511 - -23.1  -3.73775   GTCATTGCGAGCAAA GCGAAGCAATCCAGAGGCC ATGCGTG GGCCTCTGGATTGCTTCGT CGACTTCGTCTCCTC 100 90
   Rpal_0919  973668 ..  973693 - -16.1  -4.64861   GTCTCCTAAAACAAA         GCGGCCGCGGA TTGC TCCGCGGCCGT          TGCTATTTGGTCGGT 100 68
   Rpal_0915 NONE
   Rpal_0914 NONE
   Rpal_0913  970021 ..  970031 -  -2.4  -3.05343   CTTAGAGGGCGAACA                 GCAG CAG CAGC                 GCGATCAGCAGCGAG  41 1
   Rpal_0912 NONE
   Rpal_0911  968846 ..  968871 - -21.9  -5.67711   TAAACAAAACAAAAA         GGCCGGCGCGA TCGC TCGCGCCGGCC          TTTGATTTGTAACAG 100 49
   Rpal_0898  956451 ..  956475 -    -5  -3.28712   TGCCGGTCGTGACAA         GCTGCCGATCC CGAA GGAT-GTCAGC          GTCACCGGCTCGGTG  49 441
   Rpal_0893 NONE
   Rpal_0892  952620 ..  952632 -  -4.7  -3.29626   GAAGAGCCAGATCAA                GCCGC CGC GCCGC                AAGGCCGGGTTCATC  49 92
   Rpal_0888  949128 ..  949152 - -17.9  -4.17309   CAGTACAAATAACAA          GGGCCGGATCA TCG CGATCCGGCCC          TTTGTCTTTCCCCGC 100 150
   Rpal_0883  941912 ..  941926 -  -4.2  -3.72576   TCGGCGCTTAGGAAA               CGGC TCGGGAT GCCG               TCCGTTACCGCTGGG  56 44
   Rpal_0882  938294 ..  938332 - -10.9  -3.54475   GCCGGGATTACAGAA  TCGGTCGCAGTCGGGGCT TTTT AGGCCCGGCAGCG-CCGA   TCTCGTCCATCTGAT  73 52
   Rpal_0881 NONE
   Rpal_0880  936033 ..  936046 -  -5.2  -3.14344   GAGCGCGGTGATCAA               CGGC GTCCTT GCCG                TGCCGGTGATGGTGC  49 342
   Rpal_0877  932824 ..  932874 - -14.1  -3.28712   TCTGGTGCGCTAGAA TC-TCGGGATTCCGGGTTCGCGAGC TGC GCTCGCGC-CCCGGAATGACGACGA GAAGAATCCTCACGC  77 35
   Rpal_0873  926084 ..  926113 - -17.9  -3.56092   CGAGGATGCCGCAAA       CAAAACCCCGGCC GCTA GGCCGGGGCTCTG        TGTCCGTTGCTGTGA 100 49
   Rpal_0871 NONE
   Rpal_0870 NONE
   Rpal_0869  921675 ..  921718 -  -3.6  -2.50816   TGGTTACGGACGAAT GGGCGGATTCC-ACGGCGGGC GCA GGCTGCCGTCAGCGTCCGCGC GGCGTGCTGGCCAAC  39 13
   Rpal_0868  920339 ..  920377 -  -8.3  -3.06831   TCAATGTCGAGTTAA  TTCGGCGAAC-GAGATTT GATG AAAACTCAGTTTGCCGAA   AACGACGTCCGCACC  57 13
   Rpal_0867 NONE
   Rpal_0866  918595 ..  918624 - -14.3  -2.85351   CTTGGGCACATGAGA       TTCCGGGTTCGCGC TGC GCGCGC-CCCGGAA       TGATGCCTTGTAGTT  77 43
   Rpal_0863 NONE
   Rpal_0862  915202 ..  915241 -   -26  -3.28712   GTCTTTTTCTGAGAA  CGA-AAAGGCCTGACGCGG TGC CCGCGTCAGGCCTTTGTCG  TTGACAGCGTGTGGT 100 46
   Rpal_0860 NONE
   Rpal_0859 NONE
   Rpal_0858 NONE
   Rpal_0857  909027 ..  909038 -  -7.2  -4.07885   CACGCTGGCGCAAAA                CGGC TCTG GCCG                 TGTTGCCCTGCTCGG  67 122
   Rpal_0854  905002 ..  905042 -  -3.2  -2.94337   CAGTTGAAAATAGGA GGCGTCCG-CTCGACTTGGC AAG GCCAATCCGAGGCGG-CGAG GATTATGACGCAGCG  42 28
   Rpal_0853  903463 ..  903497 - -13.7  -3.76952   GCGAGCGAAGCGAAA    CAATCCAG-AGCGCCG AGCA CGGGGCTTCTGGATTG     CTTCGTCGCTTCGCT  84 73
   Rpal_0851  900476 ..  900493 -  -6.2  -3.34806   AGATCAAGCACAACA             CCCCGG ACATCA CCGGAG              GTAACGGCCGACAAG  52 115
   Rpal_0850 NONE
   Rpal_0849 NONE
   Rpal_0848  898102 ..  898147 -  -5.3  -3.94188   ACGGATTTGAAAGAA GCGCGCCGATCGCGGATCGCC CAGTTC AGCGG-CCGCG-CCGCCACGC TGAAGGTCGGCGGCT  63 139
   Rpal_0846  897160 ..  897185 - -21.9  -4.18042   TCCACACAAAGCAAA         GGGCCGGCGGA TCGC TCCGCCGGCCC          TTCTGAAATACGAGC 100 73
   Rpal_0845  894181 ..  894221 - -16.9  -3.39668   TGGCAAAGGGGACAA CAC-GCGGCGGGGCCGGCG GACTA CGCCGGCGCCG-CGCAGTG TAGGGCCTGCTGCGA  93 74
   Rpal_0844  892131 ..  892145 -  -5.6  -3.57144   TCCGTCAGCCCGAAA               TCGCCA TTA TGGCGG               CGAATTGCGGTCAAA  57 439
   Rpal_0842  891170 ..  891186 -  -2.1  -3.59262   CTGTAGAGGGTGAAA              CGTAGGG CGG CCATTCG              ACGGGAGCTTTTCGA  49 408
   Rpal_0841 NONE
   Rpal_0840 NONE
   Rpal_0839  886861 ..  886884 -  -7.3  -3.74693   GGCCATCGCATCAAA          GTCAGCGCC TCGATC GGCGCCGCC           CTGATCGGCCGCCCT  61 468
   Rpal_0836  882514 ..  882529 -  -3.2  -2.86271   GGTTGATTAGAACGA              CGCC TTGATGCC GGCG               TAGAAGCCGCGGCCG  42 1
   Rpal_0835  881811 ..  881851 -  -5.9   -3.2614   CATCGGCGACATGAA  TCCGGCGCTGCGCTGGG GCGTGAT CCCGGTGCTGCAGCGGA  TCGGCTGGGTGCCGC  53 224
   Rpal_0832  877465 ..  877489 - -11.3  -2.57132   CCCTCGTGGGAGAAG          GTGGCGCGGAC AAC GTCCGCGCCGG          ATGAGGGGGCGAGGC  62 135
   Rpal_0831 NONE
   Rpal_0830 NONE
   Rpal_0829 NONE
   Rpal_0828 NONE
   Rpal_0827 NONE
   Rpal_0826  871875 ..  871905 -    -3  -3.03124   GCGTAGCGGCTAATA       TCGAGCTACCCGGC CAC GGCGGCCGGCTCGG       CCAGGATGCAGCGCG  43 0
   Rpal_0825  869866 ..  869908 -  -9.2  -3.01712   CGGGCTCCGGCAAGA CCACGATCG--C-GCGGGCGC TGGA GCGCCGGCTGTTCGATCGCGG CGGCTCGCCGATCCT  57 498
   Rpal_0822 NONE
   Rpal_0821  865206 ..  865247 - -16.8  -2.55544   CGAGGAGCGAAGCGA CGAAGCAATCCAGTACCGC ATGCG GCGCT-CTGGATTGCTTCG CTTCGCTGGCAATGA  80 198
   Rpal_0820  864280 ..  864304 -  -4.1  -2.71144   GACTGGTGGCAACCA          TCGTCATGGCG TCA CGCCGTGGCCA          GCGACCGGGATTGCG  42 12
   Rpal_0819 NONE
   Rpal_0818  861921 ..  861935 -  -4.2  -4.00348   TTGGAACTAATCAAA               TTGCCC TGT GCGCAA               TGCAGCGGCGGTCTG  61 426
   Rpal_0817  859869 ..  859881 -  -3.3  -2.74501   AGGAATTGCCTAAAC                GCCAT TTC AAGGC                CCCCTTCGCGCGAGT  40 116
   Rpal_0816  857429 ..  857439 -  -8.2  -2.62184   GGCGGCGCCACATCA                 CGGC GCT GCCG                 CTCACCATTTGGCGT  53 27
   Rpal_0815  856926 ..  856966 - -22.7  -2.80016   TTGCACCAGCAATGA  CGCAAGCTCCAGCTCCGAC TGT ATCGGACCCGGAGCTTGCG  ACCGCTGCGCCGCTC 100 76
   Rpal_0797  834665 ..  834695 -  -3.2  -3.34398   GGCCCGCGGCAAACA      GCGCGAGCCAGCC GGTCAT GGCTT-CTTGCGC       GGCGGCAGCGTCAGC  46 10
   Rpal_0796  834016 ..  834036 -  -2.5  -2.58758   AGAAGCGGGCAGAAC            GAGATCG GTCATGG CGGTCTC            CGGCCGGTGAGCAGC  38 349
   Rpal_0795 NONE
   Rpal_0794  831928 ..  831947 -  -6.3  -3.18264   GCGCGCAGTGAGGAA            GGCGGCG GTCATG CGACGCC             TCCACCGAGCGCGCG  53 14
   Rpal_0793  830895 ..  830938 -    -3  -3.68351   CGTGGACGATCGAAA CCCG-CGACGAACTGCG-CG AACAGG CGACGCGGCTCGACGACGTG CTGCGCGTCGGCGGA  53 247
   Rpal_0791 NONE
   Rpal_0790  827868 ..  827918 - -14.8  -2.78384   GTGGCGGCTACCAGA TGCTCGGGCGCAGCATCGCCG ATCCGGACGG CGTCGATGGTGCGCCCG-GCA CAGTCGAGGGGCTCG  72 417
   Rpal_0783 NONE
   Rpal_0782  818036 ..  818058 - -13.4  -2.73012   ACGATCGACAAACAG           CGCGGGCG GTTAGTA CGCCCGCG           GACAGTGATGAGAGT  72 41
   Rpal_0777 NONE
   Rpal_0774  813224 ..  813234 -  -4.6  -3.53224   GATCTGGGGTCGAAA                 CGCC AGC GGCA                 GCATGACCCGCTTTA  53 292
   Rpal_0772  811356 ..  811387 -  -4.4  -3.53444   CGACCTTCGCCGAAA      CGCCGCGCGCAAT TCCGCAG ATCGCGC-CGGTG      ATCCGTCCGATCGGC  52 427
   Rpal_0768  808137 ..  808172 - -16.9  -3.36569   TGAACGGTCGAAACA    CGGCAACCGCACGCGG GCGCG CCGCACGCGG-TGCCG    GATAGGGGAGACGGC  91 59
   Rpal_0767  807137 ..  807168 -   -18  -2.62184   GGGTGTCCGACATGA      CGACGTGGGCGACC GGTC GGCCGCCCACGTCC       GATGAAGTGCGAGGA  86 45
   Rpal_0766 NONE
   Rpal_0765  805341 ..  805363 -  -3.3  -4.38927   GGGCGACATAAGAAA           CGGGCGG GCGATCGAT CCGCACG           CGCCCCAGCGGTTAC  64 37
   Rpal_0764 NONE
   Rpal_0762 NONE
        phnH NONE
   Rpal_0760 NONE
   Rpal_0759 NONE
        phnK NONE
   Rpal_0757 NONE
   Rpal_0756 NONE
   Rpal_0755 NONE
   Rpal_0754  797242 ..  797252 -  -2.4   -3.7791   CAATGATGGAGCAAA                 GGGG CGC CCGC                 TACCACATCGACGCC  52 25
   Rpal_0751  794475 ..  794491 -  -3.5  -3.79251   CAGTTCATGATCAAA              GGCGTGC TGG GCGTGCC              GATCATCGGGTCGGT  57 406
   Rpal_0747  789177 ..  789187 -  -2.4  -3.35798   ATCGCCCAGGCATAA                 GACC GGG GGGC                 GGTAAGTTCAACGGC  45 68
   Rpal_0746  786891 ..  786911 - -13.3  -3.53091   ATGGCCGGCGTCAAA            GGCCGGATC GGC GATCCGACC            ACGCTGTTCGAAGCC  77 244
   Rpal_0740  777036 ..  777063 - -13.4  -3.04144   GCTGTATGTCGAAGA        CGGCCG-GGCGCA TCT TGCGCTGCGGCCG        GGCGAGGTCGTGGTC  70 383
   Rpal_0736  771769 ..  771816 -  -6.2  -3.28119   ATCGAGCCAGATCAA TTTGCGAGAC-GCCAATGAGGCC GAT GGTCGCATTGTCAGTCTCGCTGA TATTGCGCTGCACCC  52 60
   Rpal_0735 NONE
   Rpal_0734 NONE
   Rpal_0733 NONE
   Rpal_0732 NONE
   Rpal_0731 NONE
   Rpal_0730  765430 ..  765467 -  -6.9  -3.14132   GGGGTCGCCGACGAA   CACGGCCTCAC-CAAGCC GAA GGCCTATGTGGTGCCGCG   GCCCGGCCAGACTCT  52 496
   Rpal_0721 NONE
   Rpal_0720  755660 ..  755686 -  -7.2  -2.57132   GCCCTCCTTGAGAAT        TCGAGCGCCGG GCGTTG CCGGCGC-CGT         TCGTCGGCGGAGAGC  51 43
   Rpal_0719 NONE
   Rpal_0718 NONE
   Rpal_0717  751962 ..  751981 -  -4.2  -4.19817   GCCAGCTATCTAAAA            TGACGAGGC AGC GCCGCG-CA            CGCTAGCGGTGGGAG  63 28
   Rpal_0705  739009 ..  739054 - -11.8  -2.54193   TATGACTTCAACGCA GCAGGCCGCCGGATCAGGCGC GGCCG GCGCCTGATCC-GCTAACAGC CGAGCGGGGTCACTG  65 18
   Rpal_0704 NONE
   Rpal_0703  736689 ..  736702 -  -9.5  -3.03007   AAGAGGCTTTGAAGA               GCCCG TGAA CGGGC                TTGGAACATCGATGG  60 429
   Rpal_0641 NONE
   Rpal_0640  693536 ..  693564 -  -5.2  -3.60798   ACCCCGATAAATCAA        GCAGCGCCAG TTTCGAACT CTGACGCGGC        GTCAGAGTTCTGCAT  55 146
        rpmH NONE
   Rpal_0637 NONE
   Rpal_0636  688694 ..  688730 - -17.4  -3.91897   CCGTGCAGCTAGAAA   TTCCAGAGCTGCGCGCC TCAC GGCACGCAGCCC-GGAA    TGACGAGGTCGTCTC 100 39
        engB NONE
   Rpal_0634 NONE
   Rpal_0633  686498 ..  686529 - -10.9   -3.3579   AAACCGCCGGAAAGA      CGTGGATGGCCGGG ACGAG CCCGGCCATG-ACG      GATGTTATCGCCGCC  69 49
   Rpal_0632 NONE
   Rpal_0631  684679 ..  684690 -  -2.2  -3.02263   AGACGCTCTGGAATA                CTGGG TTG CCC-G                TCTGCGCGGGCGATG  41 69
        dapD NONE
   Rpal_0629 NONE
   Rpal_0628  681578 ..  681609 -  -9.4  -2.90496   GCGGGTGCCAAAGCA      GCTCGACACCGATGC GAT GCACCG-TGCCGCGC      AGGTGCTGATCGGCA  56 465
   Rpal_0624  678038 ..  678091 - -15.2  -3.16564   TGGTCATGGGATGAA CCTATCCGATTCGGCGACACCGGGC GGACG GCCCGGTGTCGCCGC-CCGAGCGGG CTGCGTCAGCTCCGC  83 31
   Rpal_0623  676120 ..  676152 - -12.8  -3.15861   GACTATCTCGACGAA      GGTACGCTGTCG GCGGCGATG CGACAGCGCACC      TTGTTCTGACCCAAC  73 523
   Rpal_0618 NONE
   Rpal_0617 NONE
   Rpal_0616  670429 ..  670483 -  -8.7  -4.18488   ACCCACCGCAACAAA CCACCGAG-C-AGCATGATGGGTCAGG GCG CTTAACCCATCATGCGAGTCTGGGTGA TTTACAGCGCGCCGA  76 27
   Rpal_0613  667995 ..  668030 - -12.7  -3.17075   CGCGTTCGAAGGCAA   CGGCG--GCGGCGGTGAA CGC TTC-CCGCCGCGTCGCCG   TCGTCGTCCGCGCGG  69 210
   Rpal_0607  660018 ..  660031 -  -2.3   -3.0464   AAGCGACGGTGAACA               TGGCG ATGG CGGCA                GGAGGGACGCTGCAG  41 140
   Rpal_0606  659119 ..  659141 -  -5.5  -3.33815   ATCGCGCTGAAGTAA           TCACACCGC GACCA GCAGCGCGA           CGCCGAGCACGATCA  52 3
   Rpal_0600  655544 ..  655557 -  -2.3  -3.60865   CATGGCAAATCAGAA               TCGAG AAAG CACGA                TCAGTTCAGCTTGGA  49 26
   Rpal_0599  654675 ..  654695 -  -7.5  -3.31792   CGATGACGGGGACAA            CGGAGCAGC TTC GGTGCTCCA            CATCGCATTCGTTAG  58 37
   Rpal_0598  653055 ..  653089 -  -5.5  -3.35073   ATCACCGTGAAGGAA     GCCTGTCTGGCGCCG CTGAC CTTCGCCAGCCACGC     CTACGAGGACTTTCA  51 328
   Rpal_0594  647989 ..  648014 -  -9.7  -2.70932   GGCGTTGCGGAACCA         GAACCGACCGC GGTC GCCATCGGTTC          CCGTGAAGGGGGTAC  57 107
   Rpal_0593  646523 ..  646555 - -15.7  -4.35518   AAGGTCAGATCAAAA     CGTCGATGCCCGGC GCAAAG GCCGGGCATC-ACG      TGTATCAGGCGGACC 100 62
   Rpal_0591 NONE
   Rpal_0590 NONE
   Rpal_0589 NONE
   Rpal_0588  640303 ..  640333 -  -7.5  -3.76968   AAGGGACGCAGCAAA      GGGCGGTAAGCGGC GGAC GCCGCTTCCC-CGC       TTAGCCGAACAGTGC  65 26
   Rpal_0584 NONE
   Rpal_0583  632640 ..  632672 - -17.7  -4.17089   GTGAAAGCGGCAAAA      GTCCGGGTCGCGAGT TCC ATTCGCGGCCCGGAC      TGACATAGCGGACAG 100 59
   Rpal_0582  631999 ..  632027 -  -3.8  -3.66178   GGTGCCAATTGGAAA       GTCGCTTCGGTCG ATCC CGGCC-AAGCGAG        CCGCGAATTCGCCGG  54 200
   Rpal_0580  629410 ..  629424 -  -8.5  -3.06796   GGTGAGGGCAGCCAA               GCGGG TGACG CCCGC               TACTAACCGCTCAGA  57 54
   Rpal_0575  623509 ..  623532 -  -2.2  -3.17622   GAGTGTCACAAGATA          TGGGGGTGCG ACAT CGCGCTGCCA           AGAGCGAAAGCCTGC  43 62
   Rpal_0574  622540 ..  622559 -  -6.4  -3.96148   CGGGCCGATCACAAA            TG-GCCCGA TTA CCGGGCGCA            TTGCGACCGGCTGTT  64 389
   Rpal_0572  620967 ..  620991 -  -9.4  -3.01791   ATGCCGCGTCGAAGA         GGGTGAG-TCA AAGC TGAGCTCACCC          TCCAATATCGCGGCT  60 66
   Rpal_0571  620263 ..  620274 -  -7.2   -3.7557   CGGAAAAACGAAAGA                GCCG GAGG CGGC                 GATCAGGCTTCGCCG  65 28
   Rpal_0570  618998 ..  619031 - -22.5  -3.20901   AGCTGATCAATCCAA     GGATCGGGCCGCGTC GAGG GACGCGGCCCGATCT      TTATTGCTTAGGGTC 100 33
   Rpal_0566  615716 ..  615735 - -10.6  -3.53012   TCGGCCTGCGCCAAA            GCGCTGCG CGAG CGCCGCGC             GCCGCCGCCGCTCGG  70 253
   Rpal_0564  613286 ..  613297 -    -3  -3.71378   TACGCCAGATTGAAA                GTAT GTCA ATAC                 CGCGAAAGGTTCCCT  54 39
   Rpal_0563  612534 ..  612546 -  -5.5  -3.29263   AGACGTTCCGGACAA                CGCCT TCC AGACG                CATGAGCAGGGAGAT  52 109
   Rpal_0562  610939 ..  610997 -  -4.8  -2.73364   TCGTCATTGCAAGGA GCGCAGCGT--CGAAGCAATCCAGACAC GTGTACT GAG-CTGGTTTGCTTCGCTACGCT-CGC AGCGACGAGGCTCGT  44 61
   Rpal_0561  609935 ..  609961 -   -15  -2.78679   GTGTTCCAGGCAAAG         GCGGCCGCCGGC ACG GCCGGCGGCGGG         GATCGTTGCGGGCCC  75 49
   Rpal_0560  608750 ..  608776 -  -8.7  -3.65351   CCACCGCGATCGAAA        CCTCGCG-CGCG CTGG CGCGGCACGAAG         GCATCCCGGGCGGCA  65 246
   Rpal_0558  607035 ..  607047 -  -9.1  -2.64155   GGCGGTGTAAAGCGA                GCAGC GAA GCTGC                GCCGGCGTGCCGAGT  56 67
   Rpal_0557  606318 ..  606338 -  -6.8  -3.53012   TCGCGGCTCTGCAAA            CGAGCCGT GCCGG ACGTCTCG            TCGCTGACGGCTACG  57 36
   Rpal_0553  602261 ..  602286 -  -4.5  -2.69598   ATCCCGAGAAAAATC         GCATGCGGCGC CTGA GCGCATCAGGC          TGGATGCGACTCACG  42 358
   Rpal_0551 NONE
   Rpal_0550  600495 ..  600506 -  -2.2  -2.90075   TGGTCGGCAAGGACA                CACGG ATG CCG-G                ATTACGTCGTGCTGA  40 264
   Rpal_0548 NONE
   Rpal_0543  594577 ..  594587 -  -8.2  -3.16564   CCTGGACCTCAGCAA                 GGCC GGC GGCC                 TGCTGGCCCAGCTCG  56 180
   Rpal_0541  592575 ..  592593 -  -3.1  -4.08692   GAACCGCCTGGAAAA             GGCGA CCGTCAAAC TCGCC             AGCGGCCTATAGCCG  58 32
   Rpal_0539  589996 ..  590017 - -18.7   -4.8622   CTGCGCAACGAAAAA           CCCCGGCGG TTGC CCGCCGGGG            TTCGTCAGATACTCG 100 57
   Rpal_0538  587345 ..  587366 -  -2.8  -3.28791   ATTGCTGGCGGAGAA           GCGCTGGC TCGATG GCCTGCGG            TTCTGCGGCGAGCAT  46 402
   Rpal_0536  583807 ..  583847 -    -9  -2.91383   ACGCCTACTCACACA GTCCGTC-GCCGCGCA-GAT TGG ATCACGCGCGGATGCCGGAC GCGACCGCGGCGTCC  58 99
   Rpal_0535  583078 ..  583095 -  -6.9  -3.16191   GGACATCGGTATGAA             GCGCGGA GACA TCCGCGT              GCTCGGCGCGGCCTC  52 199
   Rpal_0531  579295 ..  579321 -   -16  -3.06696   CGGTCGTCGAAGACA         TCCGGTTCTGAC ATG ATCAGAACCGGA         AGATGCCTAAGCAGC  84 52
   Rpal_0529  576653 ..  576667 - -11.4  -3.30124   GCGCAGCCGGCACAA               GCGCGA AGC TCGCGC               GGCGCGTTCGGCCGC  68 280
   Rpal_0525 NONE
   Rpal_0524  572850 ..  572892 -  -3.3  -3.78778   GTACTACAGCAAGAA CCTGATC-GC-CGGCGGCCCG GCG CGGATCGCCGAGGAGATCGAG TCGATCCTGGCGGCA  56 396
   Rpal_0521  569251 ..  569265 -  -8.5  -3.53811   TGGATGCGCTCTAAA               GCGGC GCGGG GCCGC               TTTCGCGGTTCGCGA  65 6
   Rpal_0517 NONE
   Rpal_0516 NONE
   Rpal_0515  562445 ..  562468 -    -3  -4.08216   GCACGGCCTCGAAAA          GCGCGGCGGCA AGC TGGCGCTG-GC          CACGATGTGCGTCGG  59 263
   Rpal_0513  558354 ..  558374 -   -14  -3.55563   AGTTGATTGTCGAAA            TGGCCGGG CTCGT CCCGGCCA            TTTTTCGTTGTCGGC  81 70
   Rpal_0511  554140 ..  554160 -   -14  -4.39166   CTCCAGACAGCAAAA            TGCCCGGC GCGAG GCCGGGCA            TTGCTTATTCGCTTG 100 58
   Rpal_0508  549943 ..  549960 - -12.7  -3.89614   GGCAAGGGCGACAAA             GAGCGGC TGGT GCCGCTC              AACGCCGGCGCCAAA  82 407
   Rpal_0505 NONE
        aroB NONE
   Rpal_0503  545681 ..  545692 -  -3.6  -3.64703   CCGGCCGCAGCGAAA                CCCA TTTT CGGG                 TGAATATCGTGTCGG  54 180
   Rpal_0501  544750 ..  544770 -  -8.9  -2.76225   AATCAAGCTCAACGA            CGCAAGCGT TAT ACGCCAGCG            ACCGGCAGGTGCCGC  54 50
   Rpal_0499 NONE
   Rpal_0498 NONE
   Rpal_0497  540533 ..  540544 -  -5.8  -2.56596   GCGCTCACGAATGCA                GACG GTGG CGTC                 GCGGGCCCGGTGTCG  46 3
   Rpal_0496  539055 ..  539071 -  -3.5  -3.14132   GCCGGGCCCGATGAA              CGGCGTG CAG CTCGCGG              CCGAGATGATCAAGC  45 303
   Rpal_0493  534253 ..  534277 - -12.7  -3.13432   GTCAACATGATTCAA          GGCCGCCGGCC GCC GGCCGGCGGAG          CGCGGCGCCACGCGT  73 40
   Rpal_0492  530681 ..  530693 -  -4.7  -2.73542   TCCAAGCCCGAACCA                TCGGC TGT GCCGG                CGCGGCCTTAGTCCT  44 33
   Rpal_0491 NONE
   Rpal_0490  529838 ..  529855 -  -8.5  -3.16564   GCCGGAGTTGACGAA             TGTGCTA AATA TAGCACA              TTCCCCGCAAAAATC  58 158
   Rpal_0489  528580 ..  528600 - -19.7  -4.72272   CGCGCCCACGAAAAA            GGCCCGGCG AAT CGCCGGGCC            TTGATGTCTTCGAAC 100 54
   Rpal_0486  524586 ..  524609 -   -11  -3.37612   GCGAAGGCGAAGCAA          TCCAGCTTGG TGCA CCGAGCTGGA           TTGCCTCGTCGGCTT  69 64
   Rpal_0485 NONE
   Rpal_0484  522875 ..  522908 - -13.9  -2.89564   GCTGGACGTCAGAGA     TTCCGGGTTCGCTCGC TAT GCGAGCGC-CCCAGAA     TGACGCGTGGTTAGG  74 36
   Rpal_0480 NONE
   Rpal_0474  511798 ..  511809 -  -7.2  -2.57463   AACCCCGCCTACAAC                GCCG ACCG CGGC                 CCGGTCTCGGTGTTC  47 98
   Rpal_0471 NONE
   Rpal_0470 NONE
   Rpal_0469 NONE
   Rpal_0468 NONE
   Rpal_0467 NONE
   Rpal_0466  502380 ..  502401 - -15.1  -3.14211   AGCCTTGTCGATGAA           CGGCGCGCC GGGT GACGCGCCG            TTCGTCGTGGGGACT  83 39
   Rpal_0463  498907 ..  498944 - -25.6  -2.93723   CTTTCACGAAGCATA   GCGCCGCCGGCGGGGC ATTGCG ACCCCGCCGACGGCGC    GAGAACTCAGGCTGC 100 32
   Rpal_0462  496796 ..  496840 -  -7.1  -4.25104   CCTCGGCTACGAAAA CGCCGG-CCGCCTCGGCGCGC TGGCT GCG-GCCGAAGTGATCCAGCA CATCGGTGCCCGCCC  72 312
   Rpal_0460  493981 ..  494004 -  -5.9  -4.07568   GCTTGGTCTGGAAAA          GGCGCCGTG AAGTGG CACAGCTCC           GCTAGTCGCGCAAGC  65 27
   Rpal_0459  492889 ..  492899 -  -6.8  -3.30243   ACGGACGCTGCAGAA                 GAGG GCG CCTC                 AGCTCGTCTTGCGCA  55 24
   Rpal_0458  492082 ..  492100 -  -3.7  -3.54307   AATAGCGCTCGGAAA             CGCACGG TCAAC CCGCGGG             CTCTCCCGGAGGGAG  53 84
   Rpal_0457 NONE
   Rpal_0456  490586 ..  490600 -  -4.2  -3.05715   AATTCGGCCAGCCAA               GTCATC ATT GATGGC               ACATACGGCAGCGCG  45 41
   Rpal_0455 NONE
   Rpal_0454  489557 ..  489582 - -18.3  -3.33865   CAGTTTAAACTAATA         CGCCGCGAGCC GGTG AGCTCGCGGCG          GATCGGCAGATGCGT  93 57
   Rpal_0453  488773 ..  488790 -  -7.7  -5.64421   AGCCCAAACAAAAAA             CGCGCGTG TTC CA-GCGCG             TTACCGTCACTTATA 100 102
   Rpal_0452 NONE
   Rpal_0451 NONE
   Rpal_0450 NONE
   Rpal_0449 NONE
         lnt  482901 ..  482913 -  -4.8  -3.15324   TACGCCGAGGAAAAT                TCGC GGGCT GCGA                GAGTGCGAATTTTCT  48 80
   Rpal_0447  482297 ..  482327 -    -9  -4.86621   ACCGTGAACGAAAAA      CCGGCC-CCGC TTATATCATG GCGGAGGCCGG       CGCGACGGGAGGTCG 100 46
        trmB  481361 ..  481390 -  -6.4  -3.39327   CGGTCACATCGACAA       TCGCGATCCGATC GAATT GCTCGG-CCGCGA       GCGTGGCAAGCGAAT  55 111
   Rpal_0443 NONE
        nusA NONE
   Rpal_0441 NONE
        infB  473095 ..  473153 -  -9.6  -3.33151   TGTGGCAAAGCAAGA CGTGGACGGCCGGGACTTAGTCGCGAAG ACGTG CTTCGCGTGTT-GTCCCGGCCATG-ACG CCTCAGTTCAATCGA  63 65
        rbfA NONE
        truB NONE
        rpsO  470961 ..  471004 - -10.2   -3.0497   AGACCATGCGCAAGA TGGCGAGACGCTGACTGCGC GTTT GCACAAACAGCGTCCGGCGA TCCTGCCATGGTCTT  62 255
   Rpal_0436  468662 ..  468683 - -15.1  -5.27335   CGCCGCAAAGAAAAA           GGGCGGCCC GGTG AGGCCGCCC            TTGATCGATGATGAC 100 69
   Rpal_0435  466340 ..  466357 - -12.7  -3.53091   ATCCGCGCGCCGAAA             CGACGCC GATC GGCGTCG              AGGAGATCGACCAGT  74 423
   Rpal_0433  463276 ..  463295 - -12.8  -4.35524   CGCGGAAACGCAAAA            GGGCGACC CGAA GGCCGCCC             TTTCCTACTCATAGC  95 55
   Rpal_0432  462221 ..  462249 -  -5.9  -4.18018   CGGCTTCATGGAAAA       GCA-CTCGCCGC TCGGCC GCGGCGTGACGC        TGGAAGAACTCGGCG  70 355
   Rpal_0428  458784 ..  458808 - -15.7  -5.00884   AGGGCGCGCAAAAAA          GCCCGAGGGCA TGC TGCGCTCGGGC          CATAACCATCACCAA 100 62
   Rpal_0426  456982 ..  456999 -  -5.5  -2.88236   GAAACGGAGATCAGA             GCATCCC GGGC AGGACGC              GATCCGGCGGCTTGT  48 3
   Rpal_0425 NONE
   Rpal_0424  454735 ..  454753 -  -5.3  -3.68351   CTCGCAGGACTGAAA            CTCA-CGC TGAT GCGGTGAG             GTGTGTGACACAGGT  58 79
   Rpal_0423  453808 ..  453843 -  -5.3  -3.65426   TGACAAATCCTTAAA    GCAAG-CCCCGGGCCA GAATA TGTCCCGGCGTCCCGC    GTCAGCGGCGGCGCA  55 27
   Rpal_0422  452901 ..  452935 -    -4  -3.05384   GCGGTCGCGAGGGAA     GCGCATTTGCGGCGGG GAG CCCGGCGTTATTCCGC     GGCCTCACGCAACGC  45 17
   Rpal_0421 NONE
   Rpal_0420  451109 ..  451157 - -12.9  -3.60296   GACCTGCACTGTAAA TGGCGGCGTTCGCTGGCGGTACG ACA CGTGCCGCCTGCGCAAGGGGCCA TAGCTCAGCTGGGAG  77 297
   Rpal_0419  450667 ..  450678 -  -2.2  -3.28712   CCGGCGCGGTTAGAA                CACC GCCG GGTA                 GATGTAATAGGTGAT  45 8
   Rpal_0418  450252 ..  450273 - -13.7  -3.61609   GCATCGAAATGACAA           CGCCTCCCC GGAC GGAGAGGCG            AACGGTGGATCGCCC  81 61
   Rpal_0417  449217 ..  449252 -  -5.2  -3.73953   ATCATCTCGATGAAA    TGCTTCTTTCGCGCGC TCGC GCGCGCGATGGATACG     CGGGTCAAGCCCGCG  58 88
   Rpal_0411 NONE
   Rpal_0410  438191 ..  438235 -  -2.7  -3.76373   CCGCCAAGATCGAAA CGCCCGACACCGACAAGGAC GCGGTG ATCCCGGT-GCAGCCGGGCG CCGCCGCCTATGTGG  56 445
        phhB NONE
   Rpal_0407  436043 ..  436055 -  -9.1  -2.78384   TTCGGTCGCACGAGA                GCTGG AAG CCAGC                GGTCGGGTGCCGGTG  55 274
   Rpal_0405  433328 ..  433362 - -15.1  -3.01712   GTCGCCGCGCGAAGA    TGGTGGGTTACGGCGC AAGA GCGCC-TAACCCACCC     TTGTATCAGCGAGCT  81 55
   Rpal_0403  431164 ..  431176 -  -6.2  -3.55444   GGTCGATTCTGGAAA                GCCG TCAGC CGGC                GTTGCTCACCGCCGA  57 70
   Rpal_0402  430392 ..  430421 -   -12   -3.8969   CCATGCATATAAGAA       CCCGCCGCCCGG TTGTCG CCGGCTGGCGGG        TCGTCTGTGCCGGAA  81 96
   Rpal_0401 NONE
   Rpal_0400 NONE
   Rpal_0399 NONE
   Rpal_0398 NONE
   Rpal_0397  425736 ..  425787 - -13.1  -3.99985   GAGACAGCCAAACAA TCTCGG-GATTCCGGGTTCGCTCAC TGCC GTGAGCGC-CCCGGAATGACCGTGA AGGCCCTCAGCCCTT  86 32
   Rpal_0396  423647 ..  423680 - -11.8  -3.28712   TGGCTGCGTGCAGAA     GGCTG-CCAGGAAGC GCAGG GCTTCCTGTTCAGCC     AGGCCCGCCCGAACG  68 141
        mepA  420096 ..  420109 -  -2.3  -3.71848   CTGCCGGAGGAAGAA               GACGA AGCT CCGCC                GCCGACCCGGCTCGC  51 117
   Rpal_0392  416863 ..  416884 - -10.1  -4.63932   CATCGTCGAACAAAA           GTCCGGCCA TTTT CAGCCGGAC            CTGTTCGAGGATCAC  93 504
   Rpal_0390  415846 ..  415862 -  -5.1  -2.82742   ATGCTGCCACAACCA              TGCCG TGCCGGG CGGCA              TTTGCAACCCGAATC  46 69
        radC  415061 ..  415086 -  -4.7   -3.5556   CAAACCCGAAATCAA         GCCG-AACGC GAACTAA GCGCTGCGGC         CAGCCTCAAATCAGC  55 31
   Rpal_0382  405192 ..  405220 -  -4.3  -3.14344   GACCCGCGCCATCAA        CGACGCCAAGCCG TTC CTGCGCCGCGCCG        GACAGGTCGAACTGG  47 515
   Rpal_0379  403352 ..  403366 -  -4.2  -3.76224   GCGTTATCGATCAAA               GCCGAC CCG ATCAGC               TCCGTTCGCGCGCCA  56 21
   Rpal_0378  402290 ..  402304 -  -5.6  -2.70932   TCGGCCCCGCAATGA               CGATGC GAG GCGTCG               CTATGGCACCAGCAC  46 26
   Rpal_0377  401653 ..  401669 -  -5.1  -3.01712   CTGGCGCTGCCAACA              GTGCG CGACATC CGCAC              CTCGTTCGCGATGCG  47 84
   Rpal_0375  399768 ..  399799 -  -2.2  -2.62522   CCACCCAAGACGAAC      CCGCATCATGGTAC AGTC GTAACATGAGGCTA       CCCGGCTTCAGAGCG  38 173
   Rpal_0374  397045 ..  397070 -  -3.9  -4.09864   ACGGATTTCGGAAAA         GC-CCGCCCC CGATCTT GCGGCGGCGC         AGTTTCGCGGCTATT  61 179
   Rpal_0372 NONE
   Rpal_0371  394286 ..  394305 - -12.1  -5.33405   GCGACCAAACAAAAA            CCCCGCC TGTGAG GGCGGGG             TTCGACGTCATCAGC 100 53
   Rpal_0368  391879 ..  391889 -  -3.2  -3.16564   CGGTCACGTCAGGAA                 GTAC ATC GCAC                 CGCGATAGCAGACGT  44 3
   Rpal_0367  390282 ..  390318 - -15.1  -3.22448   CGAAACCGAACTCAA    CGAAGCGCTGCCGGGCG ATC CGCGCGACACCACTTCG    CCGCGGGCGATGGCG  78 377
   Rpal_0365  388546 ..  388566 - -16.1  -4.35044   CGATTGAAATACAAA            GGGCGGCCC GCA AGGCCGCCC            TTTTTCTTGGCCGTG 100 64
   Rpal_0361  381642 ..  381652 -  -4.6  -2.50816   GTGCGATCTAGCAAT                 GGCC ATC AGCC                 CGATGGTTACTGACA  43 119
   Rpal_0360 NONE
   Rpal_0359  379193 ..  379228 -  -3.2  -3.64162   ACCAATCATCGGAAA    CTCCTCGCG-GGTGC TTGTGGT GCACCGCGCGAACCG    GTCACTTTGACCATC  51 171
   Rpal_0358 NONE
   Rpal_0357  378178 ..  378220 - -14.1  -3.53012   CGCTGGGCTTCGAAA CCGCGGACC-TCGCCGCGCTG AAG CAGCG-GGCGGCGGCGCGCGG CGCCATCCTGGTGTG  78 261
   Rpal_0355  374826 ..  374845 -  -6.4   -4.2123   GACGCACGCAACAAA            TCCGCC TTCAAATG GGCGGA             GGGCGAAACCGAAAT  70 90
   Rpal_0351  371268 ..  371282 -    -7  -2.59881   GACGGATGCGACAAT               CTGCCG GGG CGGCGG               GATTGCGGTCGAGCG  48 173
        aceK  369218 ..  369238 -  -8.9   -2.9518   TCGAACAGGTAGAGA            CCGCGCCGA TGT TCGGCAAGG            GCCGGGATGTCTGCG  55 49
   Rpal_0349  368247 ..  368277 -  -7.6  -3.24329   CAGGTTCAATCAAGA      GGACATTGGCGCC CGACAC GGCGC-AGTGTCC       GTCAGGAGGATTTCA  56 179
   Rpal_0348  366820 ..  366833 -  -2.3  -2.71924   CATGGGGCTTGAAAT               GGTCG GGAC CGACT                CTGAGCGCAGGACTG  39 81
   Rpal_0347  365115 ..  365157 -   -13  -2.55544   CGAGGAGCGAAGCGA CGAAGCAAT-C-GAGCCTCGG TGCA CCG-GGCTCTGGATTGCTTCG CTACGCTCGCAATGA  67 63
   Rpal_0345 NONE
   Rpal_0344 NONE
   Rpal_0343  361009 ..  361034 -  -7.5  -3.61983   CGAACTCACACACAA         GGCCGAGGATC GCAT GATCTTCGCCC          ACGGCGCGCTGACGG  60 194
   Rpal_0335  353217 ..  353237 -   -14  -5.03994   TTTGAGAGAGAAAAA            CGACGCGC CGCTC GCGCGTCG            TTTGCGTTTGGTCAG 100 37
         rph NONE
   Rpal_0331 NONE
   Rpal_0330  348510 ..  348541 -  -8.6  -3.09516   CCGTTGACGATCGAA      CGGGCCGCACAGAC CGCG ATCGTTACGGCCCG       CGTCGCGGGCGACTT  56 124
   Rpal_0328  347778 ..  347804 -  -5.1  -3.40371   GACGGCACCAATGAA         CGCGGCCTT GCGGTGATG AAGGTCGCG         AGCGGCGGTGCGCAG  53 94
   Rpal_0326 NONE
   Rpal_0325  345095 ..  345113 -  -7.3  -2.70932   CGGCTTGGTCAAGCA             GCCGCGC TCATG GCGTGGC             GTCGAACGCGCCGGG  52 14
   Rpal_0324  343853 ..  343891 -  -7.4  -2.82516   TCGCCGACGATCATA  CCGCCGCAACCTCCGAT CCGACT ATCGGGGACCGCGG-GG   CTCTCTGTGCCAGCC  52 222
   Rpal_0323  343042 ..  343074 -  -9.8  -3.78953   ACCTGCATGATGAAA      TTCCCCTCCTGCAG TGGGT CTGCAGGCGGGAAC      AGTGCAGGTGCGAAC  74 71
   Rpal_0322 NONE
   Rpal_0321  342128 ..  342149 - -18.7  -4.26351   CATTAAGTGAACAAA           CCGGCGGGC ATTC GCCCGCCGG            TGCGATGTCAGGCAC 100 33
   Rpal_0320  340514 ..  340527 -  -9.5  -3.01924   GAGGGCGCGTTAACA               GCGGC TCAA GCCGC                GCGGCGCTGATCGTC  60 17
   Rpal_0319  338432 ..  338459 -  -5.5  -2.86164   TGCCGAACGATGACA        TCGCTGCTGAC TTTGTT GTTAGCAGCGG         CGCTCGGTATTTGCC  48 48
   Rpal_0318  337179 ..  337189 -  -2.4  -4.59773   GCTGATCCTGAAAAA                 GGGC GCG GACC                 ACGTGGTGGACTCGG  70 207
   Rpal_0310 NONE
   Rpal_0309 NONE
        hslU  329316 ..  329344 -  -8.8  -3.09492   CCGGCAAGGGCAAGA       GCGGCG-ACACCG AACG CGGCGTGCTCCGC        CGCCAGGTGCCGCAG  56 488
   Rpal_0304  325707 ..  325734 - -17.1  -2.90496   GTCTTCCTGAAACGA        CAATGCCCGGC GCATCG GCCGGGCATTG         CAAAAGTCGCGAGCG  87 56
   Rpal_0299  321721 ..  321741 -  -3.1   -4.0031   AGCGGGAGGAAATAA            CCGGAGTCC GCA GGTCTTCAG            GTCGACGGTGTCTTG  58 200
         rho  320346 ..  320366 - -16.1  -5.33026   GAACGCAAACAAAAA            GGGCGCCCC GTG GGGACGCCC            TTGATGGCCGGCTAT 100 50
        trmE  318889 ..  318906 -  -8.5  -3.07994   CTGAACCTCACCGAA             CTGTTTC ACGT GAAACAG              CGGAGCCCAAATCCC  57 97
   Rpal_0296  316892 ..  316906 -  -3.4  -3.60296   GAGTTTCACGTGAAA               CACGAC GGA GCCGAG               AGGTGGAGGTGTTTC  51 63
        gidB NONE
   Rpal_0294  315139 ..  315156 -  -9.1  -3.35813   CGGCATCGCAAGCAA             GCCGGCGC CCT GC-CCGGC             TCTGGATCGCGTTGC  63 87
   Rpal_0293  314073 ..  314108 -   -14  -2.94099   GTTTGTGAGTATAGA    TTCCGGGTTCGCGCAGC TAC ACCGCGCGC-CCCGGAA    TGACGAACGAGAGAT  74 72
   Rpal_0288  306575 ..  306615 -  -4.7   -3.9777   GCGAAGACCCACAAA GCCGGCACTATAACCAGC CGATCC ACCGGTCATC-CGCCGGC  GAAGGTGATCGGCTG  61 326
   Rpal_0286 NONE
   Rpal_0285  304459 ..  304485 -  -3.7  -3.52539   GAAGTTCAAGCACAA         GCTGTCGTTTC TCGAC GAAATGAAAGC         CTGCGAGCCGCTGCA  51 471
   Rpal_0273  292293 ..  292310 -  -5.5  -3.14564   CCATGTCTGGATCAA             GACAGCC GCCA AGCTGCC              CGACGATCCGGCGCT  49 369
   Rpal_0271  289863 ..  289880 -  -8.4  -3.61398   CCGCCGCTGCAATAA             CGCGCA GGAATT TGCGCG              CGCGCGTTGACGGCG  65 430
   Rpal_0267 NONE
   Rpal_0266  284890 ..  284923 - -13.1  -3.27774   TATTGCAACGATCAA     GGCTGCCTGCTGGCGG TGC CCGGCAGC-GGCACCC     CGGTGACGTTCGACG  73 164
   Rpal_0264 NONE
   Rpal_0263  280671 ..  280685 -  -2.7  -3.14132   TGTGGCCGGCAGCAA               CCGCG CCGGC CGCCG               GTTCTGGGACGCGAT  44 351
   Rpal_0260  277165 ..  277184 - -12.1  -4.78848   GGGCCAAATAGAAAA            GCCCGCG GCGATG CGCGGGC             TTTTGTTGGTACCGG 100 150
   Rpal_0256  271394 ..  271404 -  -2.4  -3.28791   AGCCCGGCCTTAGAA                 CCCG GCA CGCG                 TGTTGGCAAATTTCG  45 9
        gpsA NONE
   Rpal_0254  269822 ..  269841 -   -15  -2.70708   AAGCCAACCACATCA            TCGCCCGC GCAG GCGGGCGA             TCCAGTATCGGAGAG  75 131
   Rpal_0253  268639 ..  268652 -  -5.2  -3.25088   CCTCAAACGGATGAA               GCGC CGGCAT GCGC                GGGCCGATGCGATCG  51 472
   Rpal_0250 NONE
   Rpal_0249  264867 ..  264878 -  -3.6  -3.53012   GCTTCGTGCTCGAAA                CGCC TGCC GGCA                 GGATCTACGTGGTGT  51 370
   Rpal_0246  261597 ..  261628 - -16.6  -2.78384   GTTGTGGGGAGGAGA      TTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAA      TGACCGAGAGGGAGA  81 51
        rpsP  261139 ..  261181 -  -4.1  -2.94144   GGGCGACGCAAATGA GCC-CGGACGGCA-TCAATCG CCC CGCTTACTTGCCGTCGGCGGC CTTGCGCTCCTTGCG  44 8
        rimM  260545 ..  260580 -  -3.9  -2.79302   ATCATCTTCACGAGA    CGATG-GATCGCCGGA TCGAG CCCGGCGACGACAACG    TAGATTGTAGCAGCG  42 66
        trmD NONE
        rplS  259180 ..  259199 - -12.8  -5.45652   ACGCGCAACAAAAAA            GCGCGACC CGAA GGCCGCGC             TTTCGAAATCCGAAA 100 55
   Rpal_0241  258961 ..  258985 -  -7.7  -2.53213   GAATTGTCGAAGTGA          GCAGGATCGCG CGG CGCGAACGCGC          CGTCGGCCGATCAGC  50 36
   Rpal_0240  257458 ..  257491 - -17.5  -4.60041   ACCGATCCCGAAAAA     GCAAAACAGGCGCCC CGAG GGGCGCCTGTTTCGT      TGTTAGTTCGACCGG 100 44
   Rpal_0235  254827 ..  254847 -  -4.5  -3.57561   GGTCAAGCCGGCAAA            CCGCAGAGC CGC GCGCGGCAG            GCTCAATCCTCGGCC  53 28
        leuD  254046 ..  254066 -   -14  -4.53036   CGACAAAGACGAAAA            TGGCCGGG GCGAA CCCGGCCA            TCACGAAGCTTGATC 100 118
   Rpal_0233  251646 ..  251687 - -19.5  -2.71364   TGATGCTTTGAACGA CGTGATTCCGGGTTCGCCGC TGC GCGGCGC-CCCGGAATGACG GAGCCTATGGCTACC  90 56
   Rpal_0231  249793 ..  249829 -  -2.9  -3.56092   TGATTAGCTTCCAAA   CGATG-GATTGCCGGG TCGAGC CCCGGCCATGACGTCG    CGTCTGCTCTCACAC  51 35
   Rpal_0228  246946 ..  246958 -  -3.3  -2.64726   GGCCACAAGATCAAT                CCGGC AAC ACCAG                CCGACAATCATTCAA  39 106
   Rpal_0227  246427 ..  246459 - -24.3  -3.75629   GACCTTGAACCCAAA      CAAAAACGCCCGCCG GAT CGGCGGGCGTTTTCG      TTTCTGAGGCTGTCG 100 60
   Rpal_0225  243751 ..  243809 - -13.1  -3.41234   GAGGAAGCTAAGTAA CGCGGGCAGGTCATTCCGGG-GCACGCGC AAC GCGCGTGAACCCGGAATGACG-GTACGAG TTGGGACTACTTAGG  76 32
   Rpal_0220  238760 ..  238804 -  -5.9  -3.79113   ACGGGTGCACAACAA CGTCTGGATTCCGG-GTTCGCGC TGC GCGCGCACACCGGAAT---GACG GTGTGTGAAGAGGGA  60 62
   Rpal_0218 NONE
   Rpal_0217 NONE
        sdhA  234658 ..  234674 -  -5.7  -3.18366   TTTTGAATCAATACA              CCCGCGG CTT CGGCGGA              ATGTACTGGACGTCG  51 1
        sdhB  233713 ..  233734 - -18.7  -5.13722   GTGATCAAAACAAAA           CGGCCGGGC GAAA GCCCGGCCG            TTGGTATCAGCAACG 100 51
   Rpal_0214  233040 ..  233054 -  -5.6  -2.78384   CCGGGGGCCATTAGA               TCGCCA CCT TGGCGT               TCTCGCCGAGGTCGG  46 6
   Rpal_0213  232659 ..  232691 - -19.9  -4.21773   GCCGAAGAGAAATAA      TTCCGCCGCGTCCGA GGC TCGAACGCGGCGGTA      TTCATCACGAGTTCA 100 112
   Rpal_0211  230431 ..  230450 -   -15  -4.67038   GGTCTAAAAGGAAAA            GCCGCGGA CGGA TCCGCGGC             TTTTTTGTTACGTGA 100 53
   Rpal_0207 NONE
   Rpal_0206  224308 ..  224323 -    -9  -3.25823   GCTCCTCGATATCAA              TTCGGC GACC GCCGAA               CAGCTCGACGCGCTC  61 321
   Rpal_0199  218057 ..  218079 - -11.2  -4.67038   GCCTTAAAACGAAAA           GGCGGCCCTT TGC ATAGGCCGCC           TTCCGTTCACCTGCC  95 89
   Rpal_0198  216899 ..  216914 -    -6  -3.54741   CAGCAGGCGCCGAAA              CCGCGC TTTT GCGCGT               GCGCCTCACGCCTTC  57 332
   Rpal_0197  216217 ..  216232 -  -4.6  -2.62184   GCTTCCGCCAGATGA              TCGCGG TGAT CGGCGA               TTCCGCCAACGCCGC  42 242
   Rpal_0190  208089 ..  208099 -  -2.4  -3.24488   GTCCCGTAAACAAAC                 GCGG CAT CGGC                 ACACCCTCGAACCTG  43 227
   Rpal_0189  207544 ..  207555 -  -5.8  -3.30243   AGCTATGCGCGATAA                CGAG GTGC CTCG                 TCAGGCGGTCAGCTC  52 26
   Rpal_0188 NONE
   Rpal_0187  205145 ..  205155 -  -4.6  -2.70932   GCCGGTCCTTAAGGA                 GCCG GCG CAGC                 CAGTTTGGTTAGACG  44 45
        sucC NONE
   Rpal_0185  202848 ..  202870 - -17.8   -3.3344   ACTTAATCGCGATAA           GCTGATCCGG TTA CCGGATCAGC           AACATAGTGCACCTT  93 89
        sucA  199820 ..  199842 - -17.7  -3.47218   TCAGGAAAAACCGAA           GGGCCGCCG TCAGG CGGCGGCCC           GATGCGTCAACGCAA  95 32
   Rpal_0183 NONE
   Rpal_0182  198042 ..  198052 -  -4.6  -3.14878   CTCCTCAACTCAATA                 GCCG GAC CAGC                 ATCGCGATCAGCGCC  48 4
   Rpal_0181 NONE
   Rpal_0180 NONE
   Rpal_0179  195210 ..  195238 - -18.9  -4.91084   GAGCCAAGAAGAAAA        TCGCGCGGACCGA GCC TCGGTTCGCGCGA        TGAAACGATTTGAAT 100 47
   Rpal_0176  191025 ..  191050 -   -14   -4.4009   CGTCACGTGACAAAA         GCCTGCCGCC GATTGT AGCGGCAGGC          TTTTCTTTTGCGCGT 100 57
   Rpal_0174 NONE
   Rpal_0173  187611 ..  187629 -  -8.8  -3.04792   CCACGATGTCGAATA             GCCACGTC GAG GACGTGGA             TGGCCGGGGAAGACC  57 56
   Rpal_0172  186605 ..  186618 -  -8.1  -3.00017   CCGAAATCCAAACCA               CGGTC GGTC GACCG                GATGTAAACCTGTGT  57 48
   Rpal_0171 NONE
        atpC  184562 ..  184593 - -12.3  -4.25848   AACGTCGCATCAAAA      GCAAATGGCCGGG ACGATG CCCGGCCATTCGA       AACGTCGGAACACCT  91 50
   Rpal_0167  181143 ..  181186 -  -7.5   -4.2461   AGCTTTATGAAGAAA CCAG--CGTCAACTCGGTCGAG AAG CTCG-CCGAGGTGCCGGACTGG CTGATCTACGATATC  74 471
   Rpal_0156  169520 ..  169573 -  -9.4  -3.68738   CGCCGAAGAAATCAA GCCGCTCGCGCCGGCGACGATCGCG CAGGT CGAACTCACCGCCGA-ACGCGCGGC CGAAGCCGAACAGCA  68 408
   Rpal_0150  165910 ..  165924 -    -7   -4.5442   GCGTTAACCATAAAA               GCGACG TCA CGGCGC               CACCCAACGGCGAAG  78 388
   Rpal_0149  165346 ..  165377 -  -9.4  -3.08133   CACCGAGCGATTGAA      GCTTCAGCAGACGCA CGA CGCGCC-GCTGCAGC      CATCACTCCCCGCGG  59 286
   Rpal_0147 NONE
   Rpal_0146 NONE
   Rpal_0145 NONE
   Rpal_0144 NONE
   Rpal_0143  160238 ..  160273 - -11.9  -3.27902   TCACGCAACAACAGA   TCG--CGACCGGGCGGC TCAA GCCGCCAGGTCGTTCGA    TGGGGTCTCGGCGGC  72 5
   Rpal_0142  157916 ..  157941 - -14.8  -3.54424   GCCGACGTTCCGAAA         GTGAACGCCC GATCAG GGGCGTTCAC          CGGTGTTGCGTTTGG  85 69
   Rpal_0141 NONE
   Rpal_0140  155865 ..  155886 -  -2.9  -2.86164   GTTTCAATGAGGACA           CGACGTCAA TCCG CTGAGGCCG            GCTGCTTGGCTTGTT  42 9
   Rpal_0139  154075 ..  154101 -  -5.6  -4.13973   ACAGATCAGAAATAA         CCGGCCCGGCCG TCG CAGACGGGACGT         CGTGTCAGATGAGCA  67 80
   Rpal_0138 NONE
   Rpal_0137 NONE
   Rpal_0136 NONE
   Rpal_0135 NONE
   Rpal_0134  147317 ..  147368 -  -4.3  -3.82963   GCTGAAGAAGAAACA GCAGGTCCCGATCGCCGAGCTGAT GCGCT ATCCGCT-GGTGTTCCGCACCCGC GATTCCTCGACCCAA  58 325
   Rpal_0132 NONE
   Rpal_0131 NONE
   Rpal_0130 NONE
   Rpal_0129  142364 ..  142405 - -10.8  -4.07568   TGGCCCGCTCCAAAA CGTGACG-CGACGGAGCGC TGGAC GCGCTCCGTCGCCGGGAGG TTCTTACGTTACTTG  82 34
   Rpal_0128  141516 ..  141530 -  -6.4  -3.30124   GCGTATCGGTGAGAA               CGACGA ACT TCATCG               CAGCATGGTCTCCCT  55 20
   Rpal_0127  140482 ..  140500 -  -3.7  -3.53224   GACGGCGCGCTGAAA             CAGCCGC TGACC GTGGCCG             AGCTTTGCGTCGATC  51 229
   Rpal_0119  131520 ..  131544 - -20.1  -4.77036   TGCGACCATGAAAAA          TCCCGGCAGGT CCG ACCTGCCGGGA          TTTTTTGAATTTCGG 100 80
   Rpal_0116 NONE
   Rpal_0115  127127 ..  127148 -  -4.3  -4.09739   TCAATGCGCGGAAAA           GCTTGGCAG GTCG CTGACAGGC            GTGCCACCTCACATC  61 34
   Rpal_0113 NONE
   Rpal_0112 NONE
   Rpal_0111 NONE
   Rpal_0110  120979 ..  120996 - -12.7  -2.76696   CCGCCGCTCAACAAT             CAGCGCG TCGC CGCGCTG              TTCATCGGCCTCGGC  65 395
   Rpal_0108 NONE
   Rpal_0107  116934 ..  116952 -  -5.2  -3.58343   GGCAGGACGTGGAAA             GCCGCA TGGCTTT CGCGGC             GAGAAACTGGCAGGG  55 47
   Rpal_0106 NONE
   Rpal_0105 NONE
   Rpal_0104 NONE
   Rpal_0103 NONE
   Rpal_0102  111097 ..  111123 -  -6.4  -3.24232   TGGTCGCCAAATACA         GCTACACGGCGA ACC TCGCCTCGCTGC         AAGCCGACCGCGACA  53 215
   Rpal_0096  103843 ..  103859 - -10.1  -2.64416   GATCGTCACCACAAC              GCGCGTC GGC GACACGC              CGGTCACGGCGGCTC  59 392
   Rpal_0095 NONE
   Rpal_0094  102845 ..  102859 -    -7  -3.05384   GCGTGCGCCACCGAA               GCGGCG CGT CGCCGA               GTTAGTTGAAGCGCG  51 27
   Rpal_0093  102173 ..  102188 -  -4.7  -3.11683   ATATCCAAAATCAGA              GCTGA GCCTGT TCAGC               TGCATCAATGCGATG  48 118
   Rpal_0092 NONE
   Rpal_0091  101764 ..  101786 -  -3.2  -3.06302   ACTACCGCGACCGAA           GTGCTGCCGG TCG CCGGCGTCAG           CGGCGGTTCGACATA  43 22
   Rpal_0088   97405 ..   97440 -  -8.2  -3.21912   GGGCGAAGCGATCAA    GGCCGGCGGCTCATCGC TCC GCGACCA-CCGCCAGAC    CAGCGGTGAGCTCGG  58 219
        ubiE NONE
   Rpal_0085   94114 ..   94130 -  -5.1  -2.52543   ATTGCGTTCAAGCGA              TGAATGC AAT GCAATCA              GATCATCCGCGATAG  43 23
   Rpal_0084 NONE
         dut   91968 ..   92002 -  -7.1  -3.54543   ATCGATTGCCCCAAA    CCGC-ACGGCGCAACT GACA AGCCGCGCCATAGCCG     AATCGGAGGACATTA  59 197
   Rpal_0082 NONE
   Rpal_0081   87916 ..   87932 -  -2.9  -3.03419   ATGCGTAAAGGAAAT              CCGCC GAATCAG AGCGG              TGGTGGCACGTGGTC  43 17
   Rpal_0080   87465 ..   87484 -  -5.6  -2.67694   ATGACGACGATACGA            CGGCGCGCG GTT CG-GCGCGG            GATCATTGAAGGCCG  46 53
   Rpal_0079   86606 ..   86631 -  -3.8  -3.56594   GCAAATCCGGCGAAA         GGAGGTGGCC GGCGCG GGCCGCCCTC          TCAGGCGACGCTGGC  53 26
   Rpal_0078 NONE
   Rpal_0077   79899 ..   79912 -  -8.1  -3.21912   GGGTGAACGTAGGAA               CGCAC CGCG GTGCG                GTCAAGCACGGCTCA  58 38
   Rpal_0076   79460 ..   79479 - -16.4  -4.67038   GCCGGAAAAGCAAAA            CGGCCGGC GAAT GCCGGCCG             TTTCAGAACGTTCAT 100 54
   Rpal_0065   68470 ..   68509 -  -7.8  -3.28712   CCTCGCCTCGGACAA  GCCGGTGACGGTCGATGAC ACC GCCTTC-ATCGCCACCAGC  TTCCCGGACTTCGTT  56 80
   Rpal_0063   66420 ..   66433 -  -2.3  -4.96501   GCTGAGAAAAATAAA               GCTGC GATT GAAGC                CCGGCTTCGCCCTGC  77 273
   Rpal_0062   65904 ..   65921 -  -3.4   -2.7644   ACTTAACTCTCAAAG             GCGCTT CTTGGC AAACGC              ACGGCCGGAAGCGGA  40 2
   Rpal_0061   64517 ..   64535 - -11.6  -3.05384   CTGCCGGGTAGGGAA             GCGGCGGC ATC GCGGCCGC             CGGAAAAGCTTGTGA  68 137
   Rpal_0060   63011 ..   63032 -  -2.2  -3.58343   CCCAGTACTCCGAAA           GC-CCGCGA TCTTG CCGCGACGC           TCTGGAATACTGGGT  49 80
   Rpal_0059 NONE
   Rpal_0058 NONE
        ugpC   60050 ..   60071 -  -5.1  -4.19746   GGCAGTGCAAAAGAA           CTGTTCAAG AAGG CCAGAACAG            CGAATTCCACCAGTA  65 53
   Rpal_0056   59495 ..   59508 -  -5.2  -3.29471   CCTCTAGGAGACTAA               GCGG TCGAGT CCGC                TACTCGTTCCATTAT  50 37
   Rpal_0055   58718 ..   58734 - -11.5  -3.72893   GACGTGCTCATTAAA              CCCGCGC ATC GCGCAGG              TTGATGAGCTCGCCA  76 494
   Rpal_0046   50307 ..   50318 -  -2.2  -3.35679   GCTCGGCACCGACAA                GC-GC TCG GCAGC                CGAATTCTCGTTCTT  46 328
   Rpal_0044   48833 ..   48869 -  -9.4  -2.52464   CGCGCCTTCAACGCA   TCGCCGG-GTTC-GGCCG ATG CGGACTGACCGCCGGCGA   TGGTCAGAAATCCAG  56 29
   Rpal_0043   47403 ..   47441 - -13.8  -3.75332   ATTCTGCAAGGCAAA   CAGGACGAAGACGTGCCG TGG CGCCACGCCTTCGAGCTG   GCTGAGCGGCTGCCG  80 300
        infC   45855 ..   45879 - -12.8  -5.29846   AAGCGCAAAGAAAAA          GGCCCGTCAG ATTGG CTGCCGGGCC          TTGTTCGTTCTGAAA 100 59
        rpmI NONE
        rplT   44819 ..   44839 - -14.7   -2.6563   CCCCTCAAGAAGTCA            TGCCCGGGC TTG ACCCGGGCA            TCCATCGCTTCTCGA  74 122
        pheS   43621 ..   43664 -  -8.1  -2.75064   GCGTTCAGGCAATGA GCTCCCGCAAGCCGCAG TCTGCCCCCT CTCCCGCTTGCGGGAGA GGGCTGGGGTGAGGG  54 71
   Rpal_0037 NONE
        pheT   40359 ..   40378 -  -9.2  -3.84185   CCTACGCAAACAGAA            GCCGCGGC GCGA ACCGCAGC             GTCAGCGCGAGCAGC  71 91
   Rpal_0034   37342 ..   37360 -    -3  -3.69482   GCAGGGAATAGATAA             CGACAGCG AGA CGGTGTGG             CGGCGCGCCGGCAAT  53 413
   Rpal_0031   35251 ..   35261 -  -5.4  -4.45664   TCAAGTTAACGAAAA                 TTCG TTG CGAA                 TCCTTTTAATCTGGA  71 124
   Rpal_0030   33262 ..   33279 - -12.7  -3.28924   CACCGCTCTCGACAA             CGGCGAC CAAG GTCGCCG              AAAGCTTCATATTTT  74 53
        purH   31480 ..   31512 - -17.1  -3.80855   GGCGTGAAAAACGAA      GCGGGACAGCAAC GCGAACG GTCGCTGTCCCGC      TATTCGTCGTCCTTT 100 42
   Rpal_0026   26884 ..   26920 -  -3.7  -3.55563   AGCCCATGCTTCAAA   GTCGATGGGTTGCCGGG TCAAG CCCGGCAACG-A-CGCC   AGGTATCAATTCCCC  53 31
   Rpal_0025   25517 ..   25532 -    -9  -2.65815   CCGACATCCAGATGA              GCTTCC CTCT GGAAGC               CGCCGCCTCACGCGG  54 271
   Rpal_0023   24158 ..   24174 -  -2.1  -2.70932   TCCGCTCTTCAAGGA              CGATGTC GCA GGCAACG              CTCAGCCGTACAGCT  39 27
   Rpal_0022 NONE
   Rpal_0021   22183 ..   22200 -  -6.3  -3.70919   TCGAAATTGCAAGAA             CCATCGCA ACT TGCGA-GG             TCGCCCTCGGCTGCG  62 151
   Rpal_0020 NONE
   Rpal_0019 NONE
   Rpal_0018 NONE
   Rpal_0017   18510 ..   18535 - -11.9  -3.46602   GCGCGCAGATCACAA         CCTCGCGTGTC CCCC AACACACGAGG          TTCTGCGCGCCCGCG  74 49
   Rpal_0016   16971 ..   16987 -  -2.1  -3.40899   AACGGCTCATCATAA              GGCTCCG GTT CGGATCA              GGGCGTAACAAAGAC  47 23
   Rpal_0015 NONE
   Rpal_0014 NONE
   Rpal_0013 NONE
   Rpal_0012   13799 ..   13815 -  -7.9  -3.05816   TGAGTCCGGACGGAA              CCGCCGC TCA GCAGCAG              GACATCGGCGGAAAC  54 16
   Rpal_0011   13388 ..   13443 - -11.1  -2.71263   AATTTCTCGCAAGCA TGGGGTTCCGGTCCGCGAGGCGAGCTG CGAC CGGC-CGCCTCG-GGACCAGAACGTCG GAAATTATAAGTGGT  63 40
   Rpal_0010   12654 ..   12684 - -11.2  -2.80113   GATCACCCCATCACA      GCCGAGCTCACGA TAGGCT TCG-GAGCCCGGC       TTGAGCTGGAAGCGG  63 150
   Rpal_0009 NONE
   Rpal_0008   10433 ..   10448 -  -3.2  -2.62735   AGACCGCCGACATCA              CGAGGA CGAC TCCTCC               ACCGCAAGATGCACC  39 7
   Rpal_0007    8959 ..    8979 -  -8.9  -3.14132   GGTGGCGGCGATCAA            GGCATCGGC CCG GCCGACGTC            GATCAGCTCCTCGGA  58 28
   Rpal_0005    7046 ..    7069 -   -11  -3.50853   GTTGGTGAACTAGAA          CCGCTTGGTG TGAG CATCAAGCGG           TACCGCATTTCTTCT  71 169
