Rru_A0001	SSF48295	TrpR-like
Rru_A0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0002	SSF55979	DNA clamp
Rru_A0003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0004	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A0004	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0004	SSF56719	Type II DNA topoisomerase
Rru_A0006	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0009	SSF55804	Phoshotransferase/anion transport protein
Rru_A0011	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0014	SSF53697	SIS domain
Rru_A0014	SSF54631	CBS-domain pair
Rru_A0015	SSF53098	Ribonuclease H-like
Rru_A0016	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0018	SSF46548	alpha-helical ferredoxin
Rru_A0018	SSF51971	Nucleotide-binding domain
Rru_A0019	SSF51395	FMN-linked oxidoreductases
Rru_A0019	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0019	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
Rru_A0020	SSF52833	Thioredoxin-like
Rru_A0021	SSF46785	"Winged helix" DNA-binding domain
Rru_A0022	SSF47616	GST C-terminal domain-like
Rru_A0022	SSF52833	Thioredoxin-like
Rru_A0024	SSF50156	PDZ domain-like
Rru_A0024	SSF50494	Trypsin-like serine proteases
Rru_A0027	SSF53955	Lysozyme-like
Rru_A0028	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A0031	SSF46785	"Winged helix" DNA-binding domain
Rru_A0031	SSF53850	Periplasmic binding protein-like II
Rru_A0032	SSF48452	TPR-like
Rru_A0034	SSF52833	Thioredoxin-like
Rru_A0036	SSF82093	Heme chaperone CcmE
Rru_A0040	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0041	SSF47175	Cytochromes
Rru_A0043	SSF51161	Trimeric LpxA-like enzymes
Rru_A0044	SSF47336	ACP-like
Rru_A0045	SSF53901	Thiolase-like
Rru_A0047	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0049	SSF51230	Single hybrid motif
Rru_A0051	SSF52096	ClpP/crotonase
Rru_A0052	SSF51230	Single hybrid motif
Rru_A0052	SSF51246	Rudiment single hybrid motif
Rru_A0052	SSF52440	PreATP-grasp domain
Rru_A0052	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A0053	SSF52096	ClpP/crotonase
Rru_A0054	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A0054	SSF52922	TK C-terminal domain-like
Rru_A0057	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A0058	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0060	SSF102114	Radical SAM enzymes
Rru_A0061	SSF53167	Purine and uridine phosphorylases
Rru_A0062	SSF48239	Terpenoid cyclases/Protein prenyltransferases
Rru_A0063	SSF51905	FAD/NAD(P)-binding domain
Rru_A0064	SSF48576	Terpenoid synthases
Rru_A0064	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A0065	SSF48576	Terpenoid synthases
Rru_A0066	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0066	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0066	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0068	SSF53474	alpha/beta-Hydrolases
Rru_A0069	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0070	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0072	SSF110942	HSP90 C-terminal domain
Rru_A0072	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A0072	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0073	SSF69754	Ribosome binding protein Y (YfiA homologue)
Rru_A0074	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0075	SSF55174	Alpha-L RNA-binding motif
Rru_A0076	SSF158682	TerB-like
Rru_A0077	SSF54862	4Fe-4S ferredoxins
Rru_A0079	SSF141259	CarD-like
Rru_A0080	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0081	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0082	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0083	SSF50199	Staphylococcal nuclease
Rru_A0084	SSF53474	alpha/beta-Hydrolases
Rru_A0085	SSF52172	CheY-like
Rru_A0085	SSF55073	Nucleotide cyclase
Rru_A0087	SSF160996	HI0933 insert domain-like
Rru_A0087	SSF51905	FAD/NAD(P)-binding domain
Rru_A0088	SSF50129	GroES-like
Rru_A0088	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0089	SSF47819	HRDC-like
Rru_A0089	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0090	SSF143120	YefM-like
Rru_A0091	SSF88723	PIN domain-like
Rru_A0092	SSF53850	Periplasmic binding protein-like II
Rru_A0093	SSF161098	MetI-like
Rru_A0094	SSF161098	MetI-like
Rru_A0095	SSF50331	MOP-like
Rru_A0095	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0096	SSF111369	HlyD-like secretion proteins
Rru_A0097	SSF110916	Peptidyl-tRNA hydrolase domain-like
Rru_A0098	SSF53383	PLP-dependent transferases
Rru_A0099	SSF158472	HAMP domain-like
Rru_A0100	SSF52091	SpoIIaa-like
Rru_A0102	SSF55073	Nucleotide cyclase
Rru_A0104	SSF48239	Terpenoid cyclases/Protein prenyltransferases
Rru_A0105	SSF53955	Lysozyme-like
Rru_A0105	SSF56601	beta-lactamase/transpeptidase-like
Rru_A0106	SSF48452	TPR-like
Rru_A0107	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0112	SSF54523	Pili subunits
Rru_A0113	SSF160246	EspE N-terminal domain-like
Rru_A0113	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0117	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0118	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0120	SSF46458	Globin-like
Rru_A0120	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0121	SSF54523	Pili subunits
Rru_A0123	SSF52374	Nucleotidylyl transferase
Rru_A0123	SSF53613	Ribokinase-like
Rru_A0124	SSF141868	EAL domain-like
Rru_A0125	SSF141868	EAL domain-like
Rru_A0126	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0130	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0130	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0131	SSF52172	CheY-like
Rru_A0132	SSF56601	beta-lactamase/transpeptidase-like
Rru_A0133	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0134	SSF53720	ALDH-like
Rru_A0136	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0137	SSF53850	Periplasmic binding protein-like II
Rru_A0138	SSF52949	Macro domain-like
Rru_A0138	SSF53187	Zn-dependent exopeptidases
Rru_A0139	SSF46785	"Winged helix" DNA-binding domain
Rru_A0140	SSF46689	Homeodomain-like
Rru_A0140	SSF51182	RmlC-like cupins
Rru_A0141	SSF51569	Aldolase
Rru_A0142	SSF102198	Putative cyclase
Rru_A0143	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A0144	SSF51395	FMN-linked oxidoreductases
Rru_A0145	SSF46689	Homeodomain-like
Rru_A0145	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A0146	SSF50324	Inorganic pyrophosphatase
Rru_A0147	SSF103473	MFS general substrate transporter
Rru_A0148	SSF50447	Translation proteins
Rru_A0148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0148	SSF54980	EF-G C-terminal domain-like
Rru_A0149	SSF53613	Ribokinase-like
Rru_A0153	SSF48150	DNA-glycosylase
Rru_A0154	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0154	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A0155	SSF46689	Homeodomain-like
Rru_A0155	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A0156	SSF111369	HlyD-like secretion proteins
Rru_A0157	SSF103473	MFS general substrate transporter
Rru_A0158	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0161	SSF50129	GroES-like
Rru_A0162	SSF48592	GroEL equatorial domain-like
Rru_A0162	SSF52029	GroEL apical domain-like
Rru_A0162	SSF54849	GroEL-intermediate domain like
Rru_A0163	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0164	SSF52091	SpoIIaa-like
Rru_A0170	SSF117987	CRISPR-associated protein
Rru_A0175	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0176	SSF53383	PLP-dependent transferases
Rru_A0177	SSF53955	Lysozyme-like
Rru_A0178	SSF143430	TTP0101/SSO1404-like
Rru_A0183	SSF50249	Nucleic acid-binding proteins
Rru_A0188	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0188	SSF90123	ABC transporter transmembrane region
Rru_A0189	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0189	SSF90123	ABC transporter transmembrane region
Rru_A0190	SSF56935	Porins
Rru_A0191	SSF50692	ADC-like
Rru_A0193	SSF53901	Thiolase-like
Rru_A0194	SSF47336	ACP-like
Rru_A0200	SSF52980	Restriction endonuclease-like
Rru_A0201	SSF56219	DNase I-like
Rru_A0202	SSF56024	Phospholipase D/nuclease
Rru_A0204	SSF82657	BolA-like
Rru_A0205	SSF46565	Chaperone J-domain
Rru_A0206	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0207	SSF53300	vWA-like
Rru_A0208	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0209	SSF53213	LigB-like
Rru_A0210	SSF143800	L28p-like
Rru_A0211	SSF75708	Chemotaxis phosphatase CheZ
Rru_A0214	SSF55811	Nudix
Rru_A0215	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0216	SSF46785	"Winged helix" DNA-binding domain
Rru_A0216	SSF54909	Dimeric alpha+beta barrel
Rru_A0217	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A0218	SSF52096	ClpP/crotonase
Rru_A0221	SSF53748	Phosphoglycerate kinase
Rru_A0222	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0222	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A0223	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0224	SSF102114	Radical SAM enzymes
Rru_A0225	SSF109604	HD-domain/PDEase-like
Rru_A0226	SSF103473	MFS general substrate transporter
Rru_A0228	SSF56601	beta-lactamase/transpeptidase-like
Rru_A0229	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0230	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0230	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0235	SSF81767	Pre-protein crosslinking domain of SecA
Rru_A0235	SSF81886	Helical scaffold and wing domains of SecA
Rru_A0237	SSF54913	GlnB-like
Rru_A0240	SSF55811	Nudix
Rru_A0241	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0242	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0243	SSF48013	NusB-like
Rru_A0243	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0244	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rru_A0244	SSF54631	CBS-domain pair
Rru_A0245	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0246	SSF53067	Actin-like ATPase domain
Rru_A0247	SSF53822	Periplasmic binding protein-like I
Rru_A0249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0250	SSF53067	Actin-like ATPase domain
Rru_A0251	SSF46689	Homeodomain-like
Rru_A0251	SSF51182	RmlC-like cupins
Rru_A0252	SSF50129	GroES-like
Rru_A0252	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0253	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0254	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0256	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A0262	SSF46458	Globin-like
Rru_A0262	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0263	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A0263	SSF55060	GHMP Kinase, C-terminal domain
Rru_A0264	SSF48452	TPR-like
Rru_A0265	SSF51905	FAD/NAD(P)-binding domain
Rru_A0265	SSF54373	FAD-linked reductases, C-terminal domain
Rru_A0265	SSF54862	4Fe-4S ferredoxins
Rru_A0266	SSF52141	Uracil-DNA glycosylase-like
Rru_A0267	SSF48435	Bacterial muramidases
Rru_A0267	SSF53955	Lysozyme-like
Rru_A0268	SSF53218	Molybdenum cofactor biosynthesis proteins
Rru_A0269	SSF103088	OmpA-like
Rru_A0270	SSF110069	ApaG-like
Rru_A0271	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rru_A0272	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0273	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0274	SSF53901	Thiolase-like
Rru_A0275	SSF53474	alpha/beta-Hydrolases
Rru_A0278	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0279	SSF46548	alpha-helical ferredoxin
Rru_A0280	SSF51713	tRNA-guanine transglycosylase
Rru_A0281	SSF111337	QueA-like
Rru_A0284	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A0284	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A0285	SSF53720	ALDH-like
Rru_A0286	SSF52317	Class I glutamine amidotransferase-like
Rru_A0287	SSF48452	TPR-like
Rru_A0288	SSF51430	NAD(P)-linked oxidoreductase
Rru_A0289	SSF55811	Nudix
Rru_A0292	SSF47729	IHF-like DNA-binding proteins
Rru_A0293	SSF50249	Nucleic acid-binding proteins
Rru_A0294	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0295	SSF55205	EPT/RTPC-like
Rru_A0297	SSF53474	alpha/beta-Hydrolases
Rru_A0298	SSF53720	ALDH-like
Rru_A0299	SSF52317	Class I glutamine amidotransferase-like
Rru_A0300	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rru_A0301	SSF69118	AhpD-like
Rru_A0302	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0304	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0305	SSF55326	PurM N-terminal domain-like
Rru_A0305	SSF56042	PurM C-terminal domain-like
Rru_A0307	SSF159127	HupF/HypC-like
Rru_A0308	SSF54975	Acylphosphatase/BLUF domain-like
Rru_A0308	SSF55821	YrdC/RibB
Rru_A0309	SSF54862	4Fe-4S ferredoxins
Rru_A0310	SSF53920	Fe-only hydrogenase
Rru_A0310	SSF54862	4Fe-4S ferredoxins
Rru_A0312	SSF54862	4Fe-4S ferredoxins
Rru_A0313	SSF56228	Aldehyde ferredoxin oxidoreductase, N-terminal domain
Rru_A0316	SSF143243	Nqo5-like
Rru_A0316	SSF56762	HydB/Nqo4-like
Rru_A0318	SSF54862	4Fe-4S ferredoxins
Rru_A0321	SSF56770	HydA/Nqo6-like
Rru_A0322	SSF53163	HybD-like
Rru_A0323	SSF54862	4Fe-4S ferredoxins
Rru_A0324	SSF50692	ADC-like
Rru_A0324	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rru_A0325	SSF102114	Radical SAM enzymes
Rru_A0326	SSF46689	Homeodomain-like
Rru_A0326	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0326	SSF55781	GAF domain-like
Rru_A0327	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0327	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0330	SSF46785	"Winged helix" DNA-binding domain
Rru_A0330	SSF53850	Periplasmic binding protein-like II
Rru_A0331	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0332	SSF47616	GST C-terminal domain-like
Rru_A0332	SSF52833	Thioredoxin-like
Rru_A0333	SSF47240	Ferritin-like
Rru_A0334	SSF46785	"Winged helix" DNA-binding domain
Rru_A0334	SSF53850	Periplasmic binding protein-like II
Rru_A0335	SSF55826	YbaK/ProRS associated domain
Rru_A0336	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0337	SSF46785	"Winged helix" DNA-binding domain
Rru_A0338	SSF54427	NTF2-like
Rru_A0339	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0346	SSF117987	CRISPR-associated protein
Rru_A0351	SSF159941	MM3350-like
Rru_A0353	SSF46955	Putative DNA-binding domain
Rru_A0354	SSF56349	DNA breaking-rejoining enzymes
Rru_A0355	SSF52317	Class I glutamine amidotransferase-like
Rru_A0355	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0355	SSF54810	GMP synthetase C-terminal dimerisation domain
Rru_A0356	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A0357	SSF102405	MCP/YpsA-like
Rru_A0358	SSF48613	Heme oxygenase-like
Rru_A0359	SSF53639	AraD/HMP-PK domain-like
Rru_A0360	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A0361	SSF53167	Purine and uridine phosphorylases
Rru_A0362	SSF46626	Cytochrome c
Rru_A0363	SSF81342	Transmembrane di-heme cytochromes
Rru_A0363	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Rru_A0364	SSF50022	ISP domain
Rru_A0365	SSF75217	alpha/beta knot
Rru_A0366	SSF81301	Nucleotidyltransferase
Rru_A0366	SSF81891	Poly A polymerase C-terminal region-like
Rru_A0367	SSF55811	Nudix
Rru_A0369	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0371	SSF52317	Class I glutamine amidotransferase-like
Rru_A0372	SSF52317	Class I glutamine amidotransferase-like
Rru_A0373	SSF52218	Flavoproteins
Rru_A0374	SSF47616	GST C-terminal domain-like
Rru_A0374	SSF52833	Thioredoxin-like
Rru_A0375	SSF51182	RmlC-like cupins
Rru_A0376	SSF52172	CheY-like
Rru_A0377	SSF55781	GAF domain-like
Rru_A0377	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0379	SSF52218	Flavoproteins
Rru_A0380	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rru_A0381	SSF103473	MFS general substrate transporter
Rru_A0382	SSF46955	Putative DNA-binding domain
Rru_A0383	SSF50044	SH3-domain
Rru_A0384	SSF50129	GroES-like
Rru_A0384	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0385	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0386	SSF46785	"Winged helix" DNA-binding domain
Rru_A0387	SSF54909	Dimeric alpha+beta barrel
Rru_A0388	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0389	SSF54909	Dimeric alpha+beta barrel
Rru_A0392	SSF53218	Molybdenum cofactor biosynthesis proteins
Rru_A0393	SSF55811	Nudix
Rru_A0394	SSF56266	DmpA/ArgJ-like
Rru_A0395	SSF109998	Triger factor/SurA peptide-binding domain-like
Rru_A0395	SSF54534	FKBP-like
Rru_A0396	SSF50621	Alanine racemase C-terminal domain-like
Rru_A0396	SSF51419	PLP-binding barrel
Rru_A0397	SSF48557	L-aspartase-like
Rru_A0398	SSF52833	Thioredoxin-like
Rru_A0399	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rru_A0403	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0404	SSF53271	PRTase-like
Rru_A0404	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0406	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0406	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A0407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0409	SSF50621	Alanine racemase C-terminal domain-like
Rru_A0409	SSF51419	PLP-binding barrel
Rru_A0410	SSF48024	N-terminal domain of DnaB helicase
Rru_A0410	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0411	SSF55653	Ribosomal protein L9 C-domain
Rru_A0411	SSF55658	L9 N-domain-like
Rru_A0413	SSF46911	Ribosomal protein S18
Rru_A0414	SSF54995	Ribosomal protein S6
Rru_A0415	SSF52151	FabD/lysophospholipase-like
Rru_A0415	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rru_A0416	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0417	SSF47336	ACP-like
Rru_A0418	SSF53901	Thiolase-like
Rru_A0420	SSF50346	PRC-barrel domain
Rru_A0421	SSF50346	PRC-barrel domain
Rru_A0427	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0429	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0431	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0432	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A0433	SSF109998	Triger factor/SurA peptide-binding domain-like
Rru_A0433	SSF54534	FKBP-like
Rru_A0435	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A0435	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A0437	SSF103088	OmpA-like
Rru_A0437	SSF56925	OMPA-like
Rru_A0438	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0438	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0438	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0439	SSF53850	Periplasmic binding protein-like II
Rru_A0440	SSF51658	Xylose isomerase-like
Rru_A0441	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0442	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A0442	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A0444	SSF55821	YrdC/RibB
Rru_A0445	SSF56655	Carbohydrate phosphatase
Rru_A0447	SSF143447	AMMECR1-like
Rru_A0449	SSF102114	Radical SAM enzymes
Rru_A0452	SSF143430	TTP0101/SSO1404-like
Rru_A0454	SSF52949	Macro domain-like
Rru_A0454	SSF53187	Zn-dependent exopeptidases
Rru_A0455	SSF55811	Nudix
Rru_A0456	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0460	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0461	SSF46785	"Winged helix" DNA-binding domain
Rru_A0461	SSF53850	Periplasmic binding protein-like II
Rru_A0462	SSF53720	ALDH-like
Rru_A0463	SSF51419	PLP-binding barrel
Rru_A0465	SSF56784	HAD-like
Rru_A0466	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0467	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A0467	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A0468	SSF55021	ACT-like
Rru_A0469	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A0469	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0470	SSF53067	Actin-like ATPase domain
Rru_A0473	SSF56519	Penicillin binding protein dimerisation domain
Rru_A0473	SSF56601	beta-lactamase/transpeptidase-like
Rru_A0474	SSF50129	GroES-like
Rru_A0474	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0475	SSF51395	FMN-linked oxidoreductases
Rru_A0476	SSF82784	OsmC-like
Rru_A0478	SSF102114	Radical SAM enzymes
Rru_A0479	SSF102114	Radical SAM enzymes
Rru_A0481	SSF52151	FabD/lysophospholipase-like
Rru_A0485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0486	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0486	SSF53300	vWA-like
Rru_A0487	SSF53474	alpha/beta-Hydrolases
Rru_A0488	SSF56935	Porins
Rru_A0489	SSF53807	"Helical backbone" metal receptor
Rru_A0490	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A0491	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0493	SSF51905	FAD/NAD(P)-binding domain
Rru_A0494	SSF48576	Terpenoid synthases
Rru_A0496	SSF51206	cAMP-binding domain-like
Rru_A0497	SSF50331	MOP-like
Rru_A0497	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0498	SSF161098	MetI-like
Rru_A0499	SSF161098	MetI-like
Rru_A0500	SSF53850	Periplasmic binding protein-like II
Rru_A0502	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0503	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rru_A0503	SSF52374	Nucleotidylyl transferase
Rru_A0504	SSF51261	Duplicated hybrid motif
Rru_A0505	SSF51011	Glycosyl hydrolase domain
Rru_A0505	SSF51445	(Trans)glycosidases
Rru_A0505	SSF81296	E set domains
Rru_A0506	SSF51445	(Trans)glycosidases
Rru_A0506	SSF81296	E set domains
Rru_A0507	SSF51445	(Trans)glycosidases
Rru_A0508	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rru_A0511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0513	SSF56399	ADP-ribosylation
Rru_A0514	SSF51395	FMN-linked oxidoreductases
Rru_A0515	SSF56784	HAD-like
Rru_A0516	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A0517	SSF111331	NAD kinase/diacylglycerol kinase-like
Rru_A0518	SSF102114	Radical SAM enzymes
Rru_A0521	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A0521	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0521	SSF50341	CheW-like
Rru_A0521	SSF52172	CheY-like
Rru_A0521	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0522	SSF52172	CheY-like
Rru_A0523	SSF52172	CheY-like
Rru_A0523	SSF52738	Methylesterase CheB, C-terminal domain
Rru_A0524	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rru_A0524	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0525	SSF52172	CheY-like
Rru_A0526	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0528	SSF46565	Chaperone J-domain
Rru_A0530	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rru_A0530	SSF63380	Riboflavin synthase domain-like
Rru_A0532	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0533	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0535	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0536	SSF46689	Homeodomain-like
Rru_A0540	SSF46689	Homeodomain-like
Rru_A0540	SSF52172	CheY-like
Rru_A0540	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0542	SSF101801	Surface presentation of antigens (SPOA)
Rru_A0544	SSF48029	FliG
Rru_A0546	SSF117143	Flagellar hook protein flgE
Rru_A0550	SSF48452	TPR-like
Rru_A0550	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0551	SSF48452	TPR-like
Rru_A0551	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0552	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A0553	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0553	SSF52172	CheY-like
Rru_A0553	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0554	SSF111352	Ammonium transporter
Rru_A0555	SSF54913	GlnB-like
Rru_A0556	SSF53328	Formyltransferase
Rru_A0556	SSF55021	ACT-like
Rru_A0557	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0557	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rru_A0558	SSF141868	EAL domain-like
Rru_A0558	SSF55073	Nucleotide cyclase
Rru_A0558	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0559	SSF53474	alpha/beta-Hydrolases
Rru_A0562	SSF50494	Trypsin-like serine proteases
Rru_A0563	SSF53822	Periplasmic binding protein-like I
Rru_A0566	SSF51905	FAD/NAD(P)-binding domain
Rru_A0566	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Rru_A0566	SSF63380	Riboflavin synthase domain-like
Rru_A0567	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rru_A0568	SSF158472	HAMP domain-like
Rru_A0568	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0569	SSF48600	Chorismate mutase II
Rru_A0570	SSF55931	Glutamine synthetase/guanido kinase
Rru_A0571	SSF75217	alpha/beta knot
Rru_A0571	SSF88697	PUA domain-like
Rru_A0573	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0574	SSF143968	UbiD C-terminal domain-like
Rru_A0574	SSF50475	FMN-binding split barrel
Rru_A0575	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Rru_A0576	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0577	SSF111331	NAD kinase/diacylglycerol kinase-like
Rru_A0578	SSF56300	Metallo-dependent phosphatases
Rru_A0579	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0580	SSF82784	OsmC-like
Rru_A0581	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0582	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0583	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0585	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0586	SSF50129	GroES-like
Rru_A0587	SSF48592	GroEL equatorial domain-like
Rru_A0587	SSF52029	GroEL apical domain-like
Rru_A0587	SSF54849	GroEL-intermediate domain like
Rru_A0588	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0589	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0590	SSF161098	MetI-like
Rru_A0591	SSF161098	MetI-like
Rru_A0592	SSF53850	Periplasmic binding protein-like II
Rru_A0593	SSF56524	Oxidoreductase molybdopterin-binding domain
Rru_A0595	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A0595	SSF52922	TK C-terminal domain-like
Rru_A0596	SSF51569	Aldolase
Rru_A0598	SSF53850	Periplasmic binding protein-like II
Rru_A0599	SSF161098	MetI-like
Rru_A0600	SSF161098	MetI-like
Rru_A0601	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0602	SSF109755	PhoU-like
Rru_A0603	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A0603	SSF52172	CheY-like
Rru_A0606	SSF46785	"Winged helix" DNA-binding domain
Rru_A0606	SSF53850	Periplasmic binding protein-like II
Rru_A0607	SSF53271	PRTase-like
Rru_A0608	SSF53850	Periplasmic binding protein-like II
Rru_A0609	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0612	SSF141868	EAL domain-like
Rru_A0612	SSF55073	Nucleotide cyclase
Rru_A0612	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0613	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport
Rru_A0617	SSF50346	PRC-barrel domain
Rru_A0617	SSF81490	Photosystem II reaction centre subunit H, transmembrane region
Rru_A0618	SSF103473	MFS general substrate transporter
Rru_A0619	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0620	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0622	SSF53807	"Helical backbone" metal receptor
Rru_A0623	SSF53807	"Helical backbone" metal receptor
Rru_A0626	SSF46689	Homeodomain-like
Rru_A0626	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0628	SSF103473	MFS general substrate transporter
Rru_A0629	SSF51905	FAD/NAD(P)-binding domain
Rru_A0631	SSF55073	Nucleotide cyclase
Rru_A0631	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0632	SSF47188	Hemerythrin-like
Rru_A0632	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0633	SSF53098	Ribonuclease H-like
Rru_A0634	SSF51206	cAMP-binding domain-like
Rru_A0634	SSF54631	CBS-domain pair
Rru_A0638	SSF53955	Lysozyme-like
Rru_A0642	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0643	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rru_A0645	SSF53271	PRTase-like
Rru_A0646	SSF51246	Rudiment single hybrid motif
Rru_A0646	SSF52440	PreATP-grasp domain
Rru_A0646	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A0647	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A0648	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0650	SSF53927	Cytidine deaminase-like
Rru_A0651	SSF52317	Class I glutamine amidotransferase-like
Rru_A0652	SSF55120	Pseudouridine synthase
Rru_A0652	SSF55174	Alpha-L RNA-binding motif
Rru_A0653	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0655	SSF46785	"Winged helix" DNA-binding domain
Rru_A0655	SSF54909	Dimeric alpha+beta barrel
Rru_A0656	SSF51730	FAD-linked oxidoreductase
Rru_A0656	SSF53720	ALDH-like
Rru_A0656	SSF81935	N-terminal domain of bifunctional PutA protein
Rru_A0658	SSF46785	"Winged helix" DNA-binding domain
Rru_A0658	SSF53850	Periplasmic binding protein-like II
Rru_A0659	SSF141868	EAL domain-like
Rru_A0659	SSF52172	CheY-like
Rru_A0659	SSF55073	Nucleotide cyclase
Rru_A0660	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0662	SSF50249	Nucleic acid-binding proteins
Rru_A0663	SSF50249	Nucleic acid-binding proteins
Rru_A0664	SSF52172	CheY-like
Rru_A0664	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0665	SSF52172	CheY-like
Rru_A0666	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A0666	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0667	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Rru_A0669	SSF53254	Phosphoglycerate mutase-like
Rru_A0670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0671	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0671	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rru_A0674	SSF56349	DNA breaking-rejoining enzymes
Rru_A0675	SSF52980	Restriction endonuclease-like
Rru_A0679	SSF46689	Homeodomain-like
Rru_A0679	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A0682	SSF51905	FAD/NAD(P)-binding domain
Rru_A0682	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rru_A0683	SSF51569	Aldolase
Rru_A0684	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rru_A0684	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rru_A0686	SSF46785	"Winged helix" DNA-binding domain
Rru_A0686	SSF53850	Periplasmic binding protein-like II
Rru_A0687	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0687	SSF56317	Carbon-nitrogen hydrolase
Rru_A0688	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rru_A0688	SSF52374	Nucleotidylyl transferase
Rru_A0689	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A0689	SSF52374	Nucleotidylyl transferase
Rru_A0690	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0690	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0691	SSF109604	HD-domain/PDEase-like
Rru_A0691	SSF52172	CheY-like
Rru_A0692	SSF52172	CheY-like
Rru_A0693	SSF55781	GAF domain-like
Rru_A0693	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0694	SSF52172	CheY-like
Rru_A0695	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rru_A0695	SSF51569	Aldolase
Rru_A0696	SSF75217	alpha/beta knot
Rru_A0698	SSF53474	alpha/beta-Hydrolases
Rru_A0700	SSF47598	Ribbon-helix-helix
Rru_A0701	SSF55174	Alpha-L RNA-binding motif
Rru_A0702	SSF50331	MOP-like
Rru_A0702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0703	SSF161098	MetI-like
Rru_A0704	SSF53850	Periplasmic binding protein-like II
Rru_A0705	SSF52833	Thioredoxin-like
Rru_A0706	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A0707	SSF82657	BolA-like
Rru_A0708	SSF55326	PurM N-terminal domain-like
Rru_A0708	SSF56042	PurM C-terminal domain-like
Rru_A0709	SSF52317	Class I glutamine amidotransferase-like
Rru_A0710	SSF82697	PurS-like
Rru_A0711	SSF56104	SAICAR synthase-like
Rru_A0712	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0715	SSF143865	CorA soluble domain-like
Rru_A0715	SSF144083	Magnesium transport protein CorA, transmembrane region
Rru_A0716	SSF48557	L-aspartase-like
Rru_A0717	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0717	SSF51306	LexA/Signal peptidase
Rru_A0718	SSF158472	HAMP domain-like
Rru_A0718	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0719	SSF53850	Periplasmic binding protein-like II
Rru_A0720	SSF46785	"Winged helix" DNA-binding domain
Rru_A0721	SSF51182	RmlC-like cupins
Rru_A0722	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A0722	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A0723	SSF51905	FAD/NAD(P)-binding domain
Rru_A0725	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0726	SSF103473	MFS general substrate transporter
Rru_A0728	SSF54427	NTF2-like
Rru_A0729	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0732	SSF102712	JAB1/MPN domain
Rru_A0732	SSF47781	RuvA domain 2-like
Rru_A0733	SSF55920	Creatinase/aminopeptidase
Rru_A0734	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A0736	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0737	SSF53271	PRTase-like
Rru_A0738	SSF52833	Thioredoxin-like
Rru_A0739	SSF56317	Carbon-nitrogen hydrolase
Rru_A0741	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A0741	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0742	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0743	SSF53633	Carbamate kinase-like
Rru_A0743	SSF55021	ACT-like
Rru_A0744	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rru_A0745	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Rru_A0745	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A0745	SSF52009	Phosphohistidine domain
Rru_A0745	SSF55781	GAF domain-like
Rru_A0747	SSF51717	Dihydropteroate synthetase-like
Rru_A0747	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rru_A0748	SSF52954	Class II aaRS ABD-related
Rru_A0748	SSF55681	Class II aaRS and biotin synthetases
Rru_A0749	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0749	SSF69075	Glutamyl tRNA-reductase dimerization domain
Rru_A0749	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
Rru_A0750	SSF75620	Release factor
Rru_A0751	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0753	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0753	SSF81923	Double Clp-N motif
Rru_A0755	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A0756	SSF54631	CBS-domain pair
Rru_A0756	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A0757	SSF52499	Isochorismatase-like hydrolases
Rru_A0758	SSF46689	Homeodomain-like
Rru_A0758	SSF52317	Class I glutamine amidotransferase-like
Rru_A0759	SSF51430	NAD(P)-linked oxidoreductase
Rru_A0761	SSF102114	Radical SAM enzymes
Rru_A0762	SSF102114	Radical SAM enzymes
Rru_A0762	SSF52242	Cobalamin (vitamin B12)-binding domain
Rru_A0763	SSF102114	Radical SAM enzymes
Rru_A0764	SSF89360	HesB-like domain
Rru_A0766	SSF51556	Metallo-dependent hydrolases
Rru_A0767	SSF50331	MOP-like
Rru_A0767	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0768	SSF161098	MetI-like
Rru_A0769	SSF53850	Periplasmic binding protein-like II
Rru_A0770	SSF51261	Duplicated hybrid motif
Rru_A0772	SSF53807	"Helical backbone" metal receptor
Rru_A0773	SSF53807	"Helical backbone" metal receptor
Rru_A0774	SSF53383	PLP-dependent transferases
Rru_A0775	SSF51197	Clavaminate synthase-like
Rru_A0776	SSF53383	PLP-dependent transferases
Rru_A0777	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A0777	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A0778	SSF53850	Periplasmic binding protein-like II
Rru_A0779	SSF53850	Periplasmic binding protein-like II
Rru_A0780	SSF161098	MetI-like
Rru_A0781	SSF161098	MetI-like
Rru_A0782	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0784	SSF53383	PLP-dependent transferases
Rru_A0785	SSF46785	"Winged helix" DNA-binding domain
Rru_A0785	SSF53850	Periplasmic binding protein-like II
Rru_A0786	SSF53383	PLP-dependent transferases
Rru_A0787	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A0787	SSF54631	CBS-domain pair
Rru_A0788	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0788	SSF55021	ACT-like
Rru_A0789	SSF161098	MetI-like
Rru_A0790	SSF56801	Acetyl-CoA synthetase-like
Rru_A0791	SSF53850	Periplasmic binding protein-like II
Rru_A0792	SSF51161	Trimeric LpxA-like enzymes
Rru_A0793	SSF53807	"Helical backbone" metal receptor
Rru_A0794	SSF53807	"Helical backbone" metal receptor
Rru_A0795	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0796	SSF102114	Radical SAM enzymes
Rru_A0797	SSF103473	MFS general substrate transporter
Rru_A0798	SSF53383	PLP-dependent transferases
Rru_A0799	SSF53850	Periplasmic binding protein-like II
Rru_A0800	SSF161098	MetI-like
Rru_A0801	SSF161098	MetI-like
Rru_A0802	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0803	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0804	SSF46785	"Winged helix" DNA-binding domain
Rru_A0804	SSF53850	Periplasmic binding protein-like II
Rru_A0808	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0809	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0819	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0819	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0820	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0820	SSF53795	PEP carboxykinase-like
Rru_A0823	SSF51197	Clavaminate synthase-like
Rru_A0828	SSF109604	HD-domain/PDEase-like
Rru_A0828	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0834	SSF143430	TTP0101/SSO1404-like
Rru_A0837	SSF52058	L domain-like
Rru_A0837	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0838	SSF56935	Porins
Rru_A0839	SSF46689	Homeodomain-like
Rru_A0840	SSF103473	MFS general substrate transporter
Rru_A0841	SSF46689	Homeodomain-like
Rru_A0843	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0843	SSF90123	ABC transporter transmembrane region
Rru_A0844	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0844	SSF90123	ABC transporter transmembrane region
Rru_A0845	SSF56935	Porins
Rru_A0848	SSF103473	MFS general substrate transporter
Rru_A0851	SSF53795	PEP carboxykinase-like
Rru_A0853	SSF53795	PEP carboxykinase-like
Rru_A0854	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0855	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A0855	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A0857	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0858	SSF103473	MFS general substrate transporter
Rru_A0859	SSF111369	HlyD-like secretion proteins
Rru_A0860	SSF56954	Outer membrane efflux proteins (OEP)
Rru_A0861	SSF46785	"Winged helix" DNA-binding domain
Rru_A0862	SSF46689	Homeodomain-like
Rru_A0863	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0863	SSF90123	ABC transporter transmembrane region
Rru_A0864	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0864	SSF90123	ABC transporter transmembrane region
Rru_A0865	SSF56935	Porins
Rru_A0866	SSF103473	MFS general substrate transporter
Rru_A0867	SSF52129	Caspase-like
Rru_A0868	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
Rru_A0868	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rru_A0868	SSF52129	Caspase-like
Rru_A0870	SSF103088	OmpA-like
Rru_A0877	SSF53474	alpha/beta-Hydrolases
Rru_A0878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0879	SSF46689	Homeodomain-like
Rru_A0880	SSF56935	Porins
Rru_A0881	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0881	SSF90123	ABC transporter transmembrane region
Rru_A0882	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0882	SSF90123	ABC transporter transmembrane region
Rru_A0883	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A0883	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A0885	SSF56935	Porins
Rru_A0886	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A0886	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A0886	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A0887	SSF111369	HlyD-like secretion proteins
Rru_A0888	SSF46689	Homeodomain-like
Rru_A0888	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A0891	SSF158682	TerB-like
Rru_A0895	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0896	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A0898	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A0900	SSF56784	HAD-like
Rru_A0901	SSF53271	PRTase-like
Rru_A0902	SSF52317	Class I glutamine amidotransferase-like
Rru_A0903	SSF51998	PFL-like glycyl radical enzymes
Rru_A0904	SSF56796	Dehydroquinate synthase-like
Rru_A0905	SSF143414	CcmK-like
Rru_A0906	SSF143414	CcmK-like
Rru_A0907	SSF143414	CcmK-like
Rru_A0908	SSF143414	CcmK-like
Rru_A0910	SSF53067	Actin-like ATPase domain
Rru_A0911	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rru_A0912	SSF159133	EutN/CcmL-like
Rru_A0913	SSF143744	GlcG-like
Rru_A0914	SSF53720	ALDH-like
Rru_A0915	SSF143414	CcmK-like
Rru_A0916	SSF102114	Radical SAM enzymes
Rru_A0916	SSF54862	4Fe-4S ferredoxins
Rru_A0917	SSF55973	S-adenosylmethionine synthetase
Rru_A0918	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A0919	SSF46689	Homeodomain-like
Rru_A0919	SSF52172	CheY-like
Rru_A0920	SSF53067	Actin-like ATPase domain
Rru_A0921	SSF47413	lambda repressor-like DNA-binding domains
Rru_A0924	SSF51182	RmlC-like cupins
Rru_A0925	SSF48208	Six-hairpin glycosidases
Rru_A0925	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0926	SSF75005	Arabinanase/levansucrase/invertase
Rru_A0927	SSF51679	Bacterial luciferase-like
Rru_A0930	SSF56796	Dehydroquinate synthase-like
Rru_A0931	SSF53720	ALDH-like
Rru_A0932	SSF46689	Homeodomain-like
Rru_A0932	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0932	SSF55781	GAF domain-like
Rru_A0933	SSF53383	PLP-dependent transferases
Rru_A0934	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0934	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A0935	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0938	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A0939	SSF47781	RuvA domain 2-like
Rru_A0939	SSF50249	Nucleic acid-binding proteins
Rru_A0939	SSF52113	BRCT domain
Rru_A0939	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Rru_A0940	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0941	SSF48452	TPR-like
Rru_A0942	SSF54534	FKBP-like
Rru_A0943	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A0944	SSF52490	Tubulin nucleotide-binding domain-like
Rru_A0944	SSF55307	Tubulin C-terminal domain-like
Rru_A0945	SSF53067	Actin-like ATPase domain
Rru_A0947	SSF52440	PreATP-grasp domain
Rru_A0947	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A0948	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A0948	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Rru_A0949	SSF51984	MurCD N-terminal domain
Rru_A0949	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rru_A0949	SSF53623	MurD-like peptide ligases, catalytic domain
Rru_A0950	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A0952	SSF51984	MurCD N-terminal domain
Rru_A0952	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rru_A0952	SSF53623	MurD-like peptide ligases, catalytic domain
Rru_A0954	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rru_A0954	SSF53623	MurD-like peptide ligases, catalytic domain
Rru_A0954	SSF63418	MurE/MurF N-terminal domain
Rru_A0955	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rru_A0955	SSF53623	MurD-like peptide ligases, catalytic domain
Rru_A0955	SSF63418	MurE/MurF N-terminal domain
Rru_A0956	SSF56519	Penicillin binding protein dimerisation domain
Rru_A0956	SSF56601	beta-lactamase/transpeptidase-like
Rru_A0958	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A0958	SSF81799	Putative methyltransferase TM0872, insert domain
Rru_A0959	SSF89447	AbrB/MazE/MraZ-like
Rru_A0960	SSF47090	PGBD-like
Rru_A0960	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
Rru_A0961	SSF158682	TerB-like
Rru_A0961	SSF46565	Chaperone J-domain
Rru_A0962	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A0963	SSF82649	SufE/NifU
Rru_A0965	SSF47741	CO dehydrogenase ISP C-domain like
Rru_A0965	SSF54292	2Fe-2S ferredoxin-like
Rru_A0966	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
Rru_A0966	SSF56003	Molybdenum cofactor-binding domain
Rru_A0967	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
Rru_A0967	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A0968	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0969	SSF53300	vWA-like
Rru_A0971	SSF53218	Molybdenum cofactor biosynthesis proteins
Rru_A0971	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A0972	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A0972	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A0973	SSF47240	Ferritin-like
Rru_A0975	SSF143120	YefM-like
Rru_A0976	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
Rru_A0978	SSF46785	"Winged helix" DNA-binding domain
Rru_A0979	SSF53850	Periplasmic binding protein-like II
Rru_A0980	SSF161098	MetI-like
Rru_A0981	SSF161098	MetI-like
Rru_A0982	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0983	SSF75304	Amidase signature (AS) enzymes
Rru_A0984	SSF53187	Zn-dependent exopeptidases
Rru_A0984	SSF55031	Bacterial exopeptidase dimerisation domain
Rru_A0985	SSF55073	Nucleotide cyclase
Rru_A0986	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0987	SSF47616	GST C-terminal domain-like
Rru_A0987	SSF52833	Thioredoxin-like
Rru_A0989	SSF53822	Periplasmic binding protein-like I
Rru_A0990	SSF141868	EAL domain-like
Rru_A0990	SSF158472	HAMP domain-like
Rru_A0990	SSF55073	Nucleotide cyclase
Rru_A0993	SSF46689	Homeodomain-like
Rru_A0993	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A0993	SSF55781	GAF domain-like
Rru_A0994	SSF102114	Radical SAM enzymes
Rru_A0994	SSF53146	Nitrogenase accessory factor-like
Rru_A0995	SSF54862	4Fe-4S ferredoxins
Rru_A0996	SSF48371	ARM repeat
Rru_A0998	SSF159203	NifT/FixU-like
Rru_A1000	SSF143880	NE0471 N-terminal domain-like
Rru_A1001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1002	SSF161098	MetI-like
Rru_A1003	SSF161098	MetI-like
Rru_A1004	SSF53850	Periplasmic binding protein-like II
Rru_A1005	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A1007	SSF52833	Thioredoxin-like
Rru_A1008	SSF101478	ADP-ribosylglycohydrolase
Rru_A1010	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1011	SSF53807	"Helical backbone" metal receptor
Rru_A1012	SSF53807	"Helical backbone" metal receptor
Rru_A1013	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1015	SSF161098	MetI-like
Rru_A1016	SSF161098	MetI-like
Rru_A1017	SSF50331	MOP-like
Rru_A1017	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1018	SSF53850	Periplasmic binding protein-like II
Rru_A1019	SSF51905	FAD/NAD(P)-binding domain
Rru_A1020	SSF46626	Cytochrome c
Rru_A1021	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A1021	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A1024	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1024	SSF51306	LexA/Signal peptidase
Rru_A1025	SSF50685	Barwin-like endoglucanases
Rru_A1026	SSF46955	Putative DNA-binding domain
Rru_A1027	SSF55008	HMA, heavy metal-associated domain
Rru_A1027	SSF56784	HAD-like
Rru_A1027	SSF81653	Calcium ATPase, transduction domain A
Rru_A1027	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rru_A1027	SSF81665	Calcium ATPase, transmembrane domain M
Rru_A1029	SSF46689	Homeodomain-like
Rru_A1033	SSF47240	Ferritin-like
Rru_A1034	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1034	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1035	SSF141868	EAL domain-like
Rru_A1035	SSF55073	Nucleotide cyclase
Rru_A1035	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1037	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A1037	SSF51556	Metallo-dependent hydrolases
Rru_A1038	SSF52151	FabD/lysophospholipase-like
Rru_A1040	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1040	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rru_A1041	SSF46785	"Winged helix" DNA-binding domain
Rru_A1041	SSF53850	Periplasmic binding protein-like II
Rru_A1044	SSF56420	Peptide deformylase
Rru_A1046	SSF56801	Acetyl-CoA synthetase-like
Rru_A1047	SSF53784	Phosphofructokinase
Rru_A1050	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Rru_A1051	SSF51246	Rudiment single hybrid motif
Rru_A1051	SSF52440	PreATP-grasp domain
Rru_A1051	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1052	SSF52172	CheY-like
Rru_A1053	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1056	SSF50129	GroES-like
Rru_A1056	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1057	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1058	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1059	SSF51430	NAD(P)-linked oxidoreductase
Rru_A1060	SSF46785	"Winged helix" DNA-binding domain
Rru_A1060	SSF53850	Periplasmic binding protein-like II
Rru_A1061	SSF47598	Ribbon-helix-helix
Rru_A1062	SSF88723	PIN domain-like
Rru_A1063	SSF53850	Periplasmic binding protein-like II
Rru_A1064	SSF143011	RelE-like
Rru_A1065	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1066	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1067	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1068	SSF53383	PLP-dependent transferases
Rru_A1070	SSF49764	HSP20-like chaperones
Rru_A1071	SSF55073	Nucleotide cyclase
Rru_A1072	SSF143800	L28p-like
Rru_A1073	SSF103088	OmpA-like
Rru_A1075	SSF103088	OmpA-like
Rru_A1076	SSF56655	Carbohydrate phosphatase
Rru_A1077	SSF50104	Translation proteins SH3-like domain
Rru_A1077	SSF50249	Nucleic acid-binding proteins
Rru_A1078	SSF55681	Class II aaRS and biotin synthetases
Rru_A1079	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A1080	SSF51391	Thiamin phosphate synthase
Rru_A1083	SSF102829	Cell division protein ZapA-like
Rru_A1084	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1085	SSF56300	Metallo-dependent phosphatases
Rru_A1086	SSF75625	YebC-like
Rru_A1087	SSF53098	Ribonuclease H-like
Rru_A1088	SSF46929	DNA helicase RuvA subunit, C-terminal domain
Rru_A1088	SSF47781	RuvA domain 2-like
Rru_A1088	SSF50249	Nucleic acid-binding proteins
Rru_A1089	SSF46785	"Winged helix" DNA-binding domain
Rru_A1089	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1090	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1093	SSF74653	TolA/TonB C-terminal domain
Rru_A1094	SSF52964	TolB, N-terminal domain
Rru_A1094	SSF69304	Tricorn protease N-terminal domain
Rru_A1095	SSF103088	OmpA-like
Rru_A1096	SSF48452	TPR-like
Rru_A1097	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1098	SSF140990	FtsH protease domain-like
Rru_A1098	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1099	SSF51717	Dihydropteroate synthetase-like
Rru_A1100	SSF53738	Phosphoglucomutase, first 3 domains
Rru_A1100	SSF55957	Phosphoglucomutase, C-terminal domain
Rru_A1102	SSF53613	Ribokinase-like
Rru_A1103	SSF54506	Diaminopimelate epimerase-like
Rru_A1104	SSF53383	PLP-dependent transferases
Rru_A1105	SSF55681	Class II aaRS and biotin synthetases
Rru_A1106	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1107	SSF56112	Protein kinase-like (PK-like)
Rru_A1109	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1110	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A1110	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A1111	SSF55120	Pseudouridine synthase
Rru_A1111	SSF55174	Alpha-L RNA-binding motif
Rru_A1113	SSF102712	JAB1/MPN domain
Rru_A1114	SSF103473	MFS general substrate transporter
Rru_A1115	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1116	SSF46689	Homeodomain-like
Rru_A1117	SSF111369	HlyD-like secretion proteins
Rru_A1118	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A1118	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A1118	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A1120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1120	SSF90123	ABC transporter transmembrane region
Rru_A1121	SSF51230	Single hybrid motif
Rru_A1121	SSF51246	Rudiment single hybrid motif
Rru_A1121	SSF51569	Aldolase
Rru_A1121	SSF52440	PreATP-grasp domain
Rru_A1121	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1121	SSF89000	post-HMGL domain-like
Rru_A1122	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A1123	SSF55826	YbaK/ProRS associated domain
Rru_A1124	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A1124	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A1125	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1128	SSF53098	Ribonuclease H-like
Rru_A1129	SSF111352	Ammonium transporter
Rru_A1130	SSF54913	GlnB-like
Rru_A1131	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rru_A1132	SSF56322	ADC synthase
Rru_A1133	SSF46600	C-terminal UvrC-binding domain of UvrB
Rru_A1133	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1135	SSF53383	PLP-dependent transferases
Rru_A1136	SSF53807	"Helical backbone" metal receptor
Rru_A1137	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A1138	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1139	SSF49503	Cupredoxins
Rru_A1140	SSF50447	Translation proteins
Rru_A1140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1140	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A1140	SSF54980	EF-G C-terminal domain-like
Rru_A1141	SSF51419	PLP-binding barrel
Rru_A1142	SSF53383	PLP-dependent transferases
Rru_A1143	SSF46785	"Winged helix" DNA-binding domain
Rru_A1143	SSF53383	PLP-dependent transferases
Rru_A1145	SSF53613	Ribokinase-like
Rru_A1146	SSF53383	PLP-dependent transferases
Rru_A1147	SSF53383	PLP-dependent transferases
Rru_A1153	SSF143430	TTP0101/SSO1404-like
Rru_A1156	SSF56784	HAD-like
Rru_A1156	SSF81653	Calcium ATPase, transduction domain A
Rru_A1156	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
Rru_A1156	SSF81665	Calcium ATPase, transmembrane domain M
Rru_A1158	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1158	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1158	SSF55781	GAF domain-like
Rru_A1158	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1159	SSF52172	CheY-like
Rru_A1160	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1161	SSF56770	HydA/Nqo6-like
Rru_A1162	SSF56762	HydB/Nqo4-like
Rru_A1163	SSF81342	Transmembrane di-heme cytochromes
Rru_A1164	SSF53163	HybD-like
Rru_A1165	SSF159127	HupF/HypC-like
Rru_A1167	SSF56762	HydB/Nqo4-like
Rru_A1169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1170	SSF46689	Homeodomain-like
Rru_A1170	SSF52172	CheY-like
Rru_A1170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1171	SSF46785	"Winged helix" DNA-binding domain
Rru_A1172	SSF46785	"Winged helix" DNA-binding domain
Rru_A1172	SSF54909	Dimeric alpha+beta barrel
Rru_A1173	SSF48452	TPR-like
Rru_A1173	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1174	SSF55298	YjgF-like
Rru_A1175	SSF69047	Hypothetical protein YjbJ
Rru_A1176	SSF52768	Arginase/deacetylase
Rru_A1177	SSF46458	Globin-like
Rru_A1177	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1178	SSF52954	Class II aaRS ABD-related
Rru_A1178	SSF55681	Class II aaRS and biotin synthetases
Rru_A1179	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1179	SSF46785	"Winged helix" DNA-binding domain
Rru_A1180	SSF103473	MFS general substrate transporter
Rru_A1181	SSF47364	Domain of the SRP/SRP receptor G-proteins
Rru_A1181	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1182	SSF102114	Radical SAM enzymes
Rru_A1183	SSF54506	Diaminopimelate epimerase-like
Rru_A1184	SSF47446	Signal peptide-binding domain
Rru_A1184	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1185	SSF54565	Ribosomal protein S16
Rru_A1186	SSF50346	PRC-barrel domain
Rru_A1186	SSF50447	Translation proteins
Rru_A1187	SSF75217	alpha/beta knot
Rru_A1188	SSF50104	Translation proteins SH3-like domain
Rru_A1189	SSF53732	Aconitase iron-sulfur domain
Rru_A1190	SSF52016	LeuD/IlvD-like
Rru_A1191	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A1192	SSF50022	ISP domain
Rru_A1193	SSF53146	Nitrogenase accessory factor-like
Rru_A1196	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1196	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A1197	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1199	SSF53613	Ribokinase-like
Rru_A1200	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A1201	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1202	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rru_A1203	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Rru_A1204	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rru_A1204	SSF51905	FAD/NAD(P)-binding domain
Rru_A1204	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rru_A1205	SSF46548	alpha-helical ferredoxin
Rru_A1205	SSF54292	2Fe-2S ferredoxin-like
Rru_A1207	SSF64182	DHH phosphoesterases
Rru_A1208	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1210	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1210	SSF56327	LDH C-terminal domain-like
Rru_A1211	SSF52210	Succinyl-CoA synthetase domains
Rru_A1211	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1212	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1212	SSF52210	Succinyl-CoA synthetase domains
Rru_A1213	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A1214	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rru_A1214	SSF51230	Single hybrid motif
Rru_A1214	SSF52777	CoA-dependent acyltransferases
Rru_A1215	SSF51905	FAD/NAD(P)-binding domain
Rru_A1215	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rru_A1219	SSF46689	Homeodomain-like
Rru_A1219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1220	SSF56349	DNA breaking-rejoining enzymes
Rru_A1222	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1223	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
Rru_A1224	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rru_A1224	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rru_A1224	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1225	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Rru_A1226	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Rru_A1226	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Rru_A1226	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1227	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Rru_A1228	SSF47240	Ferritin-like
Rru_A1230	SSF55811	Nudix
Rru_A1231	SSF88713	Glycoside hydrolase/deacetylase
Rru_A1232	SSF50156	PDZ domain-like
Rru_A1232	SSF52096	ClpP/crotonase
Rru_A1233	SSF144284	Sec2 N-terminal region
Rru_A1233	SSF51261	Duplicated hybrid motif
Rru_A1234	SSF53649	Alkaline phosphatase-like
Rru_A1234	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Rru_A1235	SSF75217	alpha/beta knot
Rru_A1236	SSF81301	Nucleotidyltransferase
Rru_A1237	SSF52374	Nucleotidylyl transferase
Rru_A1238	SSF53720	ALDH-like
Rru_A1239	SSF53633	Carbamate kinase-like
Rru_A1239	SSF88697	PUA domain-like
Rru_A1240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1240	SSF82051	Obg GTP-binding protein N-terminal domain
Rru_A1241	SSF110324	Ribosomal L27 protein-like
Rru_A1242	SSF141091	L21p-like
Rru_A1243	SSF81342	Transmembrane di-heme cytochromes
Rru_A1245	SSF46785	"Winged helix" DNA-binding domain
Rru_A1245	SSF51206	cAMP-binding domain-like
Rru_A1247	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1250	SSF56601	beta-lactamase/transpeptidase-like
Rru_A1252	SSF54368	Glutamine synthetase, N-terminal domain
Rru_A1252	SSF55931	Glutamine synthetase/guanido kinase
Rru_A1253	SSF54368	Glutamine synthetase, N-terminal domain
Rru_A1253	SSF55931	Glutamine synthetase/guanido kinase
Rru_A1254	SSF53383	PLP-dependent transferases
Rru_A1255	SSF46785	"Winged helix" DNA-binding domain
Rru_A1255	SSF48008	GntR ligand-binding domain-like
Rru_A1260	SSF50331	MOP-like
Rru_A1260	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1261	SSF161098	MetI-like
Rru_A1262	SSF53850	Periplasmic binding protein-like II
Rru_A1263	SSF161098	MetI-like
Rru_A1264	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1265	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1265	SSF46785	"Winged helix" DNA-binding domain
Rru_A1266	SSF51366	Ribulose-phoshate binding barrel
Rru_A1267	SSF53067	Actin-like ATPase domain
Rru_A1268	SSF56784	HAD-like
Rru_A1270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1271	SSF56300	Metallo-dependent phosphatases
Rru_A1272	SSF55073	Nucleotide cyclase
Rru_A1272	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1273	SSF53474	alpha/beta-Hydrolases
Rru_A1274	SSF102114	Radical SAM enzymes
Rru_A1276	SSF51998	PFL-like glycyl radical enzymes
Rru_A1277	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A1277	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1277	SSF52172	CheY-like
Rru_A1277	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1278	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1279	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1279	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1280	SSF53795	PEP carboxykinase-like
Rru_A1282	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A1282	SSF52172	CheY-like
Rru_A1283	SSF48695	Multiheme cytochromes
Rru_A1284	SSF89155	TorD-like
Rru_A1285	SSF50494	Trypsin-like serine proteases
Rru_A1285	SSF50978	WD40 repeat-like
Rru_A1285	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rru_A1285	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1287	SSF50692	ADC-like
Rru_A1287	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rru_A1288	SSF102114	Radical SAM enzymes
Rru_A1289	SSF53649	Alkaline phosphatase-like
Rru_A1291	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1293	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1294	SSF46785	"Winged helix" DNA-binding domain
Rru_A1294	SSF64288	Chorismate lyase-like
Rru_A1295	SSF53850	Periplasmic binding protein-like II
Rru_A1296	SSF161098	MetI-like
Rru_A1297	SSF161098	MetI-like
Rru_A1298	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1299	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A1299	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A1300	SSF53187	Zn-dependent exopeptidases
Rru_A1301	SSF48557	L-aspartase-like
Rru_A1302	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A1302	SSF51556	Metallo-dependent hydrolases
Rru_A1303	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A1303	SSF51556	Metallo-dependent hydrolases
Rru_A1304	SSF111326	Urocanase
Rru_A1305	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1306	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1307	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1308	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A1308	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A1309	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A1309	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1309	SSF52096	ClpP/crotonase
Rru_A1310	SSF53901	Thiolase-like
Rru_A1311	SSF46955	Putative DNA-binding domain
Rru_A1312	SSF56801	Acetyl-CoA synthetase-like
Rru_A1313	SSF56935	Porins
Rru_A1315	SSF55718	SCP-like
Rru_A1316	SSF56801	Acetyl-CoA synthetase-like
Rru_A1317	SSF51905	FAD/NAD(P)-binding domain
Rru_A1317	SSF54373	FAD-linked reductases, C-terminal domain
Rru_A1317	SSF54862	4Fe-4S ferredoxins
Rru_A1318	SSF111064	Hut operon positive regulatory protein HutP
Rru_A1321	SSF55681	Class II aaRS and biotin synthetases
Rru_A1322	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1324	SSF52096	ClpP/crotonase
Rru_A1325	SSF52096	ClpP/crotonase
Rru_A1326	SSF56801	Acetyl-CoA synthetase-like
Rru_A1328	SSF51230	Single hybrid motif
Rru_A1331	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1334	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
Rru_A1336	SSF53822	Periplasmic binding protein-like I
Rru_A1337	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1339	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1340	SSF82549	DAK1/DegV-like
Rru_A1341	SSF101473	DhaL-like
Rru_A1344	SSF46785	"Winged helix" DNA-binding domain
Rru_A1344	SSF55781	GAF domain-like
Rru_A1345	SSF51569	Aldolase
Rru_A1346	SSF53067	Actin-like ATPase domain
Rru_A1347	SSF46785	"Winged helix" DNA-binding domain
Rru_A1347	SSF48008	GntR ligand-binding domain-like
Rru_A1349	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1355	SSF47240	Ferritin-like
Rru_A1356	SSF52317	Class I glutamine amidotransferase-like
Rru_A1356	SSF56634	Heme-dependent catalase-like
Rru_A1357	SSF51569	Aldolase
Rru_A1358	SSF51351	Triosephosphate isomerase (TIM)
Rru_A1359	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
Rru_A1360	SSF101473	DhaL-like
Rru_A1361	SSF82549	DAK1/DegV-like
Rru_A1362	SSF51658	Xylose isomerase-like
Rru_A1364	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1365	SSF53822	Periplasmic binding protein-like I
Rru_A1366	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1367	SSF53697	SIS domain
Rru_A1374	SSF52129	Caspase-like
Rru_A1378	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1378	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A1379	SSF53067	Actin-like ATPase domain
Rru_A1380	SSF53901	Thiolase-like
Rru_A1382	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1383	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1384	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1384	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1384	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1385	SSF46689	Homeodomain-like
Rru_A1385	SSF52172	CheY-like
Rru_A1385	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1386	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1387	SSF50475	FMN-binding split barrel
Rru_A1388	SSF46689	Homeodomain-like
Rru_A1388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1388	SSF55781	GAF domain-like
Rru_A1390	SSF110857	Gamma-glutamyl cyclotransferase-like
Rru_A1392	SSF53807	"Helical backbone" metal receptor
Rru_A1394	SSF53807	"Helical backbone" metal receptor
Rru_A1395	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1396	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1397	SSF52091	SpoIIaa-like
Rru_A1398	SSF52172	CheY-like
Rru_A1399	SSF160246	EspE N-terminal domain-like
Rru_A1399	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A1399	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1399	SSF50341	CheW-like
Rru_A1399	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1400	SSF50341	CheW-like
Rru_A1401	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1402	SSF50341	CheW-like
Rru_A1403	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1404	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1405	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rru_A1405	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1406	SSF52172	CheY-like
Rru_A1406	SSF52738	Methylesterase CheB, C-terminal domain
Rru_A1407	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Rru_A1408	SSF158472	HAMP domain-like
Rru_A1408	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1410	SSF46548	alpha-helical ferredoxin
Rru_A1410	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A1410	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A1411	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1412	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1412	SSF54862	4Fe-4S ferredoxins
Rru_A1414	SSF46785	"Winged helix" DNA-binding domain
Rru_A1414	SSF48008	GntR ligand-binding domain-like
Rru_A1415	SSF88723	PIN domain-like
Rru_A1416	SSF47598	Ribbon-helix-helix
Rru_A1417	SSF51905	FAD/NAD(P)-binding domain
Rru_A1417	SSF52833	Thioredoxin-like
Rru_A1418	SSF52833	Thioredoxin-like
Rru_A1419	SSF143968	UbiD C-terminal domain-like
Rru_A1419	SSF50475	FMN-binding split barrel
Rru_A1422	SSF56770	HydA/Nqo6-like
Rru_A1423	SSF54862	4Fe-4S ferredoxins
Rru_A1424	SSF143243	Nqo5-like
Rru_A1425	SSF56762	HydB/Nqo4-like
Rru_A1426	SSF54862	4Fe-4S ferredoxins
Rru_A1427	SSF56821	Prismane protein-like
Rru_A1428	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1431	SSF46785	"Winged helix" DNA-binding domain
Rru_A1431	SSF51206	cAMP-binding domain-like
Rru_A1432	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rru_A1432	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rru_A1433	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Rru_A1433	SSF51905	FAD/NAD(P)-binding domain
Rru_A1433	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rru_A1434	SSF142754	NadA-like
Rru_A1435	SSF46689	Homeodomain-like
Rru_A1435	SSF52172	CheY-like
Rru_A1435	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1436	SSF103190	Sensory domain-like
Rru_A1436	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1436	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1437	SSF118215	Proton glutamate symport protein
Rru_A1438	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A1438	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A1440	SSF56935	Porins
Rru_A1441	SSF46785	"Winged helix" DNA-binding domain
Rru_A1443	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1444	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
Rru_A1444	SSF51998	PFL-like glycyl radical enzymes
Rru_A1445	SSF47240	Ferritin-like
Rru_A1446	SSF47240	Ferritin-like
Rru_A1447	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1450	SSF46785	"Winged helix" DNA-binding domain
Rru_A1450	SSF52788	Phosphotyrosine protein phosphatases I
Rru_A1452	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1453	SSF88874	Receptor-binding domain of short tail fibre protein gp12
Rru_A1454	SSF88874	Receptor-binding domain of short tail fibre protein gp12
Rru_A1455	SSF88874	Receptor-binding domain of short tail fibre protein gp12
Rru_A1456	SSF46689	Homeodomain-like
Rru_A1457	SSF46785	"Winged helix" DNA-binding domain
Rru_A1457	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1458	SSF56935	Porins
Rru_A1459	SSF103473	MFS general substrate transporter
Rru_A1460	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1460	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1461	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rru_A1461	SSF51569	Aldolase
Rru_A1461	SSF89000	post-HMGL domain-like
Rru_A1462	SSF46689	Homeodomain-like
Rru_A1462	SSF51182	RmlC-like cupins
Rru_A1463	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1464	SSF53795	PEP carboxykinase-like
Rru_A1466	SSF46785	"Winged helix" DNA-binding domain
Rru_A1466	SSF53850	Periplasmic binding protein-like II
Rru_A1467	SSF53067	Actin-like ATPase domain
Rru_A1468	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A1468	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1469	SSF53901	Thiolase-like
Rru_A1471	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1472	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1476	SSF57783	Zinc beta-ribbon
Rru_A1476	SSF82057	Prokaryotic SH3-related domain
Rru_A1478	SSF53795	PEP carboxykinase-like
Rru_A1483	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1483	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1484	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1485	SSF51126	Pectin lyase-like
Rru_A1486	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1488	SSF56300	Metallo-dependent phosphatases
Rru_A1490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1493	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1496	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1497	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1497	SSF90123	ABC transporter transmembrane region
Rru_A1499	SSF47240	Ferritin-like
Rru_A1500	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A1500	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1500	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rru_A1500	SSF52172	CheY-like
Rru_A1500	SSF52738	Methylesterase CheB, C-terminal domain
Rru_A1500	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1500	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1500	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1503	SSF50129	GroES-like
Rru_A1503	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1504	SSF88713	Glycoside hydrolase/deacetylase
Rru_A1505	SSF50891	Cyclophilin-like
Rru_A1506	SSF160467	PH0987 N-terminal domain-like
Rru_A1506	SSF50891	Cyclophilin-like
Rru_A1507	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1508	SSF51905	FAD/NAD(P)-binding domain
Rru_A1510	SSF50346	PRC-barrel domain
Rru_A1511	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A1512	SSF81301	Nucleotidyltransferase
Rru_A1521	SSF50249	Nucleic acid-binding proteins
Rru_A1522	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A1523	SSF47188	Hemerythrin-like
Rru_A1524	SSF52309	N-(deoxy)ribosyltransferase-like
Rru_A1525	SSF55811	Nudix
Rru_A1526	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1527	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1529	SSF46785	"Winged helix" DNA-binding domain
Rru_A1529	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1530	SSF51730	FAD-linked oxidoreductase
Rru_A1531	SSF47644	Methionine synthase domain
Rru_A1531	SSF51717	Dihydropteroate synthetase-like
Rru_A1531	SSF52242	Cobalamin (vitamin B12)-binding domain
Rru_A1531	SSF56507	Methionine synthase activation domain-like
Rru_A1531	SSF82282	Homocysteine S-methyltransferase
Rru_A1532	SSF48452	TPR-like
Rru_A1533	SSF141571	Pentapeptide repeat-like
Rru_A1534	SSF54631	CBS-domain pair
Rru_A1534	SSF81340	Clc chloride channel
Rru_A1535	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1536	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1538	SSF53146	Nitrogenase accessory factor-like
Rru_A1539	SSF50331	MOP-like
Rru_A1540	SSF46785	"Winged helix" DNA-binding domain
Rru_A1540	SSF53850	Periplasmic binding protein-like II
Rru_A1541	SSF53383	PLP-dependent transferases
Rru_A1542	SSF53720	ALDH-like
Rru_A1543	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Rru_A1543	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Rru_A1544	SSF141868	EAL domain-like
Rru_A1544	SSF55073	Nucleotide cyclase
Rru_A1544	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1545	SSF55073	Nucleotide cyclase
Rru_A1546	SSF51905	FAD/NAD(P)-binding domain
Rru_A1546	SSF54373	FAD-linked reductases, C-terminal domain
Rru_A1547	SSF53613	Ribokinase-like
Rru_A1547	SSF64153	YjeF N-terminal domain-like
Rru_A1549	SSF102735	Trigger factor ribosome-binding domain
Rru_A1549	SSF109998	Triger factor/SurA peptide-binding domain-like
Rru_A1549	SSF54534	FKBP-like
Rru_A1550	SSF52096	ClpP/crotonase
Rru_A1551	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1551	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rru_A1552	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1552	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A1552	SSF88697	PUA domain-like
Rru_A1553	SSF47729	IHF-like DNA-binding proteins
Rru_A1554	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1556	SSF56770	HydA/Nqo6-like
Rru_A1557	SSF143243	Nqo5-like
Rru_A1558	SSF56762	HydB/Nqo4-like
Rru_A1559	SSF52833	Thioredoxin-like
Rru_A1560	SSF140490	Nqo1C-terminal domain-like
Rru_A1560	SSF142019	Nqo1 FMN-binding domain-like
Rru_A1560	SSF142984	Nqo1 middle domain-like
Rru_A1561	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rru_A1561	SSF54292	2Fe-2S ferredoxin-like
Rru_A1561	SSF54862	4Fe-4S ferredoxins
Rru_A1563	SSF54862	4Fe-4S ferredoxins
Rru_A1569	SSF50037	C-terminal domain of transcriptional repressors
Rru_A1569	SSF55681	Class II aaRS and biotin synthetases
Rru_A1570	SSF53067	Actin-like ATPase domain
Rru_A1571	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A1572	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rru_A1573	SSF48150	DNA-glycosylase
Rru_A1574	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rru_A1576	SSF52954	Class II aaRS ABD-related
Rru_A1576	SSF55681	Class II aaRS and biotin synthetases
Rru_A1577	SSF52317	Class I glutamine amidotransferase-like
Rru_A1579	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1580	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1581	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1582	SSF160975	AF1531-like
Rru_A1582	SSF89550	PHP domain-like
Rru_A1583	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1584	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1585	SSF53474	alpha/beta-Hydrolases
Rru_A1586	SSF52313	Ribosomal protein S2
Rru_A1587	SSF46934	UBA-like
Rru_A1587	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
Rru_A1588	SSF53633	Carbamate kinase-like
Rru_A1589	SSF55194	Ribosome recycling factor, RRF
Rru_A1590	SSF64005	Undecaprenyl diphosphate synthase
Rru_A1592	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1592	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A1592	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Rru_A1593	SSF50156	PDZ domain-like
Rru_A1595	SSF111384	OmpH-like
Rru_A1596	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1597	SSF51161	Trimeric LpxA-like enzymes
Rru_A1599	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1600	SSF48256	Citrate synthase
Rru_A1601	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Rru_A1601	SSF52374	Nucleotidylyl transferase
Rru_A1603	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1604	SSF51445	(Trans)glycosidases
Rru_A1605	SSF51011	Glycosyl hydrolase domain
Rru_A1605	SSF51445	(Trans)glycosidases
Rru_A1605	SSF56112	Protein kinase-like (PK-like)
Rru_A1606	SSF51011	Glycosyl hydrolase domain
Rru_A1606	SSF51445	(Trans)glycosidases
Rru_A1606	SSF81296	E set domains
Rru_A1607	SSF51445	(Trans)glycosidases
Rru_A1608	SSF50182	Sm-like ribonucleoproteins
Rru_A1608	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rru_A1608	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rru_A1610	SSF48371	ARM repeat
Rru_A1611	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1611	SSF90002	Hypothetical protein YjiA, C-terminal domain
Rru_A1612	SSF141734	HisI-like
Rru_A1613	SSF53383	PLP-dependent transferases
Rru_A1615	SSF52821	Rhodanese/Cell cycle control phosphatase
Rru_A1616	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A1621	SSF51395	FMN-linked oxidoreductases
Rru_A1622	SSF46785	"Winged helix" DNA-binding domain
Rru_A1622	SSF51206	cAMP-binding domain-like
Rru_A1623	SSF55021	ACT-like
Rru_A1625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1626	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1642	SSF53850	Periplasmic binding protein-like II
Rru_A1643	SSF161098	MetI-like
Rru_A1644	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1648	SSF47598	Ribbon-helix-helix
Rru_A1650	SSF48452	TPR-like
Rru_A1651	SSF103473	MFS general substrate transporter
Rru_A1652	SSF46785	"Winged helix" DNA-binding domain
Rru_A1652	SSF53850	Periplasmic binding protein-like II
Rru_A1653	SSF52172	CheY-like
Rru_A1653	SSF55073	Nucleotide cyclase
Rru_A1653	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1654	SSF52172	CheY-like
Rru_A1655	SSF47188	Hemerythrin-like
Rru_A1657	SSF103473	MFS general substrate transporter
Rru_A1658	SSF56801	Acetyl-CoA synthetase-like
Rru_A1659	SSF141868	EAL domain-like
Rru_A1660	SSF51261	Duplicated hybrid motif
Rru_A1665	SSF57829	Zn-binding ribosomal proteins
Rru_A1666	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A1667	SSF53901	Thiolase-like
Rru_A1668	SSF47729	IHF-like DNA-binding proteins
Rru_A1669	SSF46955	Putative DNA-binding domain
Rru_A1671	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1673	SSF54913	GlnB-like
Rru_A1674	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A1674	SSF69765	IpsF-like
Rru_A1676	SSF51395	FMN-linked oxidoreductases
Rru_A1677	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1677	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1677	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1678	SSF46689	Homeodomain-like
Rru_A1678	SSF52172	CheY-like
Rru_A1678	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1679	SSF158472	HAMP domain-like
Rru_A1679	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1679	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1679	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1680	SSF46689	Homeodomain-like
Rru_A1680	SSF52172	CheY-like
Rru_A1680	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1681	SSF116726	TrkA C-terminal domain-like
Rru_A1681	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1682	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rru_A1683	SSF56784	HAD-like
Rru_A1684	SSF50182	Sm-like ribonucleoproteins
Rru_A1685	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1687	SSF56655	Carbohydrate phosphatase
Rru_A1690	SSF101386	all-alpha NTP pyrophosphatases
Rru_A1691	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1692	SSF56276	S-adenosylmethionine decarboxylase
Rru_A1693	SSF50621	Alanine racemase C-terminal domain-like
Rru_A1693	SSF51419	PLP-binding barrel
Rru_A1698	SSF161111	Cation efflux protein transmembrane domain-like
Rru_A1699	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A1700	SSF51556	Metallo-dependent hydrolases
Rru_A1701	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A1701	SSF52374	Nucleotidylyl transferase
Rru_A1702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1703	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1704	SSF56601	beta-lactamase/transpeptidase-like
Rru_A1704	SSF69189	Penicillin-binding protein associated domain
Rru_A1705	SSF110997	Sporulation related repeat
Rru_A1705	SSF50685	Barwin-like endoglucanases
Rru_A1706	SSF47090	PGBD-like
Rru_A1706	SSF53955	Lysozyme-like
Rru_A1709	SSF88723	PIN domain-like
Rru_A1710	SSF143120	YefM-like
Rru_A1711	SSF55298	YjgF-like
Rru_A1712	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1712	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1713	SSF52218	Flavoproteins
Rru_A1714	SSF46785	"Winged helix" DNA-binding domain
Rru_A1714	SSF53850	Periplasmic binding protein-like II
Rru_A1717	SSF46785	"Winged helix" DNA-binding domain
Rru_A1718	SSF51726	UROD/MetE-like
Rru_A1719	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A1720	SSF69118	AhpD-like
Rru_A1721	SSF52499	Isochorismatase-like hydrolases
Rru_A1724	SSF52317	Class I glutamine amidotransferase-like
Rru_A1725	SSF51069	Carbonic anhydrase
Rru_A1726	SSF141259	CarD-like
Rru_A1726	SSF143517	TRCF domain-like
Rru_A1726	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1727	SSF109910	YgfY-like
Rru_A1728	SSF50249	Nucleic acid-binding proteins
Rru_A1728	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1730	SSF50199	Staphylococcal nuclease
Rru_A1735	SSF75708	Chemotaxis phosphatase CheZ
Rru_A1738	SSF143100	TTHA1013/TTHA0281-like
Rru_A1739	SSF54786	YcfA/nrd intein domain
Rru_A1741	SSF56349	DNA breaking-rejoining enzymes
Rru_A1742	SSF50891	Cyclophilin-like
Rru_A1743	SSF52374	Nucleotidylyl transferase
Rru_A1744	SSF101904	GyrA/ParC C-terminal domain-like
Rru_A1744	SSF56719	Type II DNA topoisomerase
Rru_A1745	SSF50249	Nucleic acid-binding proteins
Rru_A1746	SSF53822	Periplasmic binding protein-like I
Rru_A1748	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1752	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1757	SSF51905	FAD/NAD(P)-binding domain
Rru_A1759	SSF48576	Terpenoid synthases
Rru_A1760	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
Rru_A1760	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
Rru_A1761	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1762	SSF64076	MTH938-like
Rru_A1763	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A1764	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A1766	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1767	SSF51261	Duplicated hybrid motif
Rru_A1767	SSF54106	LysM domain
Rru_A1768	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1769	SSF64167	SurE-like
Rru_A1770	SSF46589	tRNA-binding arm
Rru_A1770	SSF55681	Class II aaRS and biotin synthetases
Rru_A1774	SSF46785	"Winged helix" DNA-binding domain
Rru_A1777	SSF51445	(Trans)glycosidases
Rru_A1778	SSF110997	Sporulation related repeat
Rru_A1779	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A1779	SSF52374	Nucleotidylyl transferase
Rru_A1779	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Rru_A1780	SSF109604	HD-domain/PDEase-like
Rru_A1781	SSF89360	HesB-like domain
Rru_A1782	SSF49329	Cu,Zn superoxide dismutase-like
Rru_A1784	SSF56219	DNase I-like
Rru_A1786	SSF143975	IlvD/EDD N-terminal domain-like
Rru_A1786	SSF52016	LeuD/IlvD-like
Rru_A1787	SSF46785	"Winged helix" DNA-binding domain
Rru_A1787	SSF51206	cAMP-binding domain-like
Rru_A1788	SSF52172	CheY-like
Rru_A1789	SSF46626	Cytochrome c
Rru_A1792	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1793	SSF111369	HlyD-like secretion proteins
Rru_A1794	SSF46689	Homeodomain-like
Rru_A1794	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A1795	SSF56784	HAD-like
Rru_A1796	SSF46589	tRNA-binding arm
Rru_A1796	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A1796	SSF50677	ValRS/IleRS/LeuRS editing domain
Rru_A1796	SSF52374	Nucleotidylyl transferase
Rru_A1798	SSF56954	Outer membrane efflux proteins (OEP)
Rru_A1799	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1800	SSF143120	YefM-like
Rru_A1802	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1802	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1804	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1804	SSF52210	Succinyl-CoA synthetase domains
Rru_A1804	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1804	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1805	SSF141868	EAL domain-like
Rru_A1805	SSF55073	Nucleotide cyclase
Rru_A1805	SSF55781	GAF domain-like
Rru_A1805	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1807	SSF103088	OmpA-like
Rru_A1809	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A1809	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A1811	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A1812	SSF101852	Bacterial fluorinating enzyme, C-terminal domain
Rru_A1812	SSF102522	Bacterial fluorinating enzyme, N-terminal domain
Rru_A1813	SSF53187	Zn-dependent exopeptidases
Rru_A1813	SSF55031	Bacterial exopeptidase dimerisation domain
Rru_A1814	SSF55961	Bet v1-like
Rru_A1815	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1815	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A1816	SSF53474	alpha/beta-Hydrolases
Rru_A1817	SSF48452	TPR-like
Rru_A1817	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1817	SSF53474	alpha/beta-Hydrolases
Rru_A1820	SSF55326	PurM N-terminal domain-like
Rru_A1820	SSF56042	PurM C-terminal domain-like
Rru_A1821	SSF48013	NusB-like
Rru_A1822	SSF52121	Lumazine synthase
Rru_A1823	SSF142695	RibA-like
Rru_A1823	SSF55821	YrdC/RibB
Rru_A1824	SSF63380	Riboflavin synthase domain-like
Rru_A1825	SSF53597	Dihydrofolate reductase-like
Rru_A1825	SSF53927	Cytidine deaminase-like
Rru_A1827	SSF53383	PLP-dependent transferases
Rru_A1828	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
Rru_A1831	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rru_A1832	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rru_A1833	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A1833	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1834	SSF52096	ClpP/crotonase
Rru_A1835	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A1835	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A1836	SSF53383	PLP-dependent transferases
Rru_A1837	SSF51569	Aldolase
Rru_A1838	SSF53474	alpha/beta-Hydrolases
Rru_A1840	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1841	SSF50475	FMN-binding split barrel
Rru_A1843	SSF103088	OmpA-like
Rru_A1845	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1847	SSF54001	Cysteine proteinases
Rru_A1848	SSF101904	GyrA/ParC C-terminal domain-like
Rru_A1848	SSF56719	Type II DNA topoisomerase
Rru_A1849	SSF50249	Nucleic acid-binding proteins
Rru_A1849	SSF57863	ArfGap/RecO-like zinc finger
Rru_A1851	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1851	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rru_A1852	SSF54768	dsRNA-binding domain-like
Rru_A1852	SSF69065	RNase III domain-like
Rru_A1853	SSF51306	LexA/Signal peptidase
Rru_A1854	SSF63892	Pyridoxine 5'-phosphate synthase
Rru_A1856	SSF109604	HD-domain/PDEase-like
Rru_A1856	SSF55021	ACT-like
Rru_A1856	SSF81271	TGS-like
Rru_A1856	SSF81301	Nucleotidyltransferase
Rru_A1857	SSF63562	RPB6/omega subunit-like
Rru_A1858	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Rru_A1860	SSF52141	Uracil-DNA glycosylase-like
Rru_A1861	SSF48452	TPR-like
Rru_A1862	SSF48452	TPR-like
Rru_A1863	SSF52833	Thioredoxin-like
Rru_A1864	SSF74982	Small protein B (SmpB)
Rru_A1865	SSF51569	Aldolase
Rru_A1866	SSF48435	Bacterial muramidases
Rru_A1866	SSF53955	Lysozyme-like
Rru_A1868	SSF51261	Duplicated hybrid motif
Rru_A1869	SSF101307	YutG-like
Rru_A1870	SSF142433	CinA-like
Rru_A1871	SSF109755	PhoU-like
Rru_A1872	SSF46689	Homeodomain-like
Rru_A1873	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A1875	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1875	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1875	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1876	SSF55961	Bet v1-like
Rru_A1877	SSF102114	Radical SAM enzymes
Rru_A1878	SSF51905	FAD/NAD(P)-binding domain
Rru_A1878	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rru_A1879	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Rru_A1879	SSF51230	Single hybrid motif
Rru_A1879	SSF52777	CoA-dependent acyltransferases
Rru_A1880	SSF51230	Single hybrid motif
Rru_A1880	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A1880	SSF52922	TK C-terminal domain-like
Rru_A1881	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A1883	SSF143865	CorA soluble domain-like
Rru_A1883	SSF144083	Magnesium transport protein CorA, transmembrane region
Rru_A1884	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A1884	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A1885	SSF51604	Enolase C-terminal domain-like
Rru_A1885	SSF54826	Enolase N-terminal domain-like
Rru_A1886	SSF51569	Aldolase
Rru_A1887	SSF52317	Class I glutamine amidotransferase-like
Rru_A1887	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1889	SSF51351	Triosephosphate isomerase (TIM)
Rru_A1890	SSF109998	Triger factor/SurA peptide-binding domain-like
Rru_A1890	SSF54534	FKBP-like
Rru_A1891	SSF56322	ADC synthase
Rru_A1892	SSF55008	HMA, heavy metal-associated domain
Rru_A1893	SSF88713	Glycoside hydrolase/deacetylase
Rru_A1894	SSF55008	HMA, heavy metal-associated domain
Rru_A1894	SSF56784	HAD-like
Rru_A1894	SSF81653	Calcium ATPase, transduction domain A
Rru_A1894	SSF81665	Calcium ATPase, transmembrane domain M
Rru_A1895	SSF52317	Class I glutamine amidotransferase-like
Rru_A1896	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Rru_A1896	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Rru_A1897	SSF51366	Ribulose-phoshate binding barrel
Rru_A1898	SSF46785	"Winged helix" DNA-binding domain
Rru_A1898	SSF51306	LexA/Signal peptidase
Rru_A1900	SSF46785	"Winged helix" DNA-binding domain
Rru_A1900	SSF54909	Dimeric alpha+beta barrel
Rru_A1901	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A1902	SSF53822	Periplasmic binding protein-like I
Rru_A1905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1906	SSF52091	SpoIIaa-like
Rru_A1907	SSF51316	Mss4-like
Rru_A1908	SSF52172	CheY-like
Rru_A1908	SSF55073	Nucleotide cyclase
Rru_A1908	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A1910	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1911	SSF46785	"Winged helix" DNA-binding domain
Rru_A1912	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1914	SSF50249	Nucleic acid-binding proteins
Rru_A1915	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1916	SSF54292	2Fe-2S ferredoxin-like
Rru_A1917	SSF53850	Periplasmic binding protein-like II
Rru_A1918	SSF161098	MetI-like
Rru_A1919	SSF161098	MetI-like
Rru_A1920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1922	SSF52833	Thioredoxin-like
Rru_A1925	SSF46785	"Winged helix" DNA-binding domain
Rru_A1925	SSF53383	PLP-dependent transferases
Rru_A1926	SSF50475	FMN-binding split barrel
Rru_A1927	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A1928	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Rru_A1928	SSF51569	Aldolase
Rru_A1928	SSF89000	post-HMGL domain-like
Rru_A1929	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1931	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Rru_A1931	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Rru_A1933	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1933	SSF53790	Tetrapyrrole methylase
Rru_A1933	SSF75615	Siroheme synthase middle domains-like
Rru_A1934	SSF46689	Homeodomain-like
Rru_A1934	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A1935	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A1935	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Rru_A1936	SSF141523	L,D-transpeptidase catalytic domain-like
Rru_A1936	SSF47090	PGBD-like
Rru_A1937	SSF48452	TPR-like
Rru_A1938	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1939	SSF55120	Pseudouridine synthase
Rru_A1940	SSF51569	Aldolase
Rru_A1941	SSF51230	Single hybrid motif
Rru_A1941	SSF51246	Rudiment single hybrid motif
Rru_A1941	SSF52440	PreATP-grasp domain
Rru_A1941	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1942	SSF52096	ClpP/crotonase
Rru_A1943	SSF52096	ClpP/crotonase
Rru_A1944	SSF52833	Thioredoxin-like
Rru_A1945	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A1946	SSF53901	Thiolase-like
Rru_A1948	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A1948	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A1950	SSF46785	"Winged helix" DNA-binding domain
Rru_A1951	SSF46689	Homeodomain-like
Rru_A1951	SSF51182	RmlC-like cupins
Rru_A1954	SSF111369	HlyD-like secretion proteins
Rru_A1955	SSF53271	PRTase-like
Rru_A1956	SSF56784	HAD-like
Rru_A1957	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1958	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rru_A1959	SSF102114	Radical SAM enzymes
Rru_A1960	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A1961	SSF46689	Homeodomain-like
Rru_A1963	SSF48557	L-aspartase-like
Rru_A1964	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A1966	SSF56801	Acetyl-CoA synthetase-like
Rru_A1967	SSF52743	Subtilisin-like
Rru_A1968	SSF47598	Ribbon-helix-helix
Rru_A1969	SSF53474	alpha/beta-Hydrolases
Rru_A1970	SSF52794	PTS system IIB component-like
Rru_A1971	SSF53613	Ribokinase-like
Rru_A1972	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Rru_A1972	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A1972	SSF52009	Phosphohistidine domain
Rru_A1972	SSF55594	HPr-like
Rru_A1972	SSF55804	Phoshotransferase/anion transport protein
Rru_A1973	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1973	SSF53822	Periplasmic binding protein-like I
Rru_A1975	SSF47413	lambda repressor-like DNA-binding domains
Rru_A1976	SSF56801	Acetyl-CoA synthetase-like
Rru_A1977	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rru_A1978	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A1978	SSF52922	TK C-terminal domain-like
Rru_A1978	SSF54862	4Fe-4S ferredoxins
Rru_A1979	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A1980	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A1981	SSF53187	Zn-dependent exopeptidases
Rru_A1982	SSF103642	Sec-C motif
Rru_A1982	SSF54427	NTF2-like
Rru_A1984	SSF53146	Nitrogenase accessory factor-like
Rru_A1987	SSF101821	Aminopeptidase/glucanase lid domain
Rru_A1987	SSF53187	Zn-dependent exopeptidases
Rru_A1988	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A1988	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A1989	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A1989	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A1992	SSF52833	Thioredoxin-like
Rru_A1994	SSF46955	Putative DNA-binding domain
Rru_A1995	SSF158791	MgtE N-terminal domain-like
Rru_A1995	SSF161093	MgtE membrane domain-like
Rru_A1995	SSF54631	CBS-domain pair
Rru_A1996	SSF55681	Class II aaRS and biotin synthetases
Rru_A1997	SSF53474	alpha/beta-Hydrolases
Rru_A1998	SSF51649	RuBisCo, C-terminal domain
Rru_A1998	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rru_A2000	SSF51182	RmlC-like cupins
Rru_A2002	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2002	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A2003	SSF102114	Radical SAM enzymes
Rru_A2004	SSF46785	"Winged helix" DNA-binding domain
Rru_A2004	SSF53850	Periplasmic binding protein-like II
Rru_A2005	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A2005	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A2006	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rru_A2007	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A2009	SSF53067	Actin-like ATPase domain
Rru_A2010	SSF53383	PLP-dependent transferases
Rru_A2011	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2012	SSF161098	MetI-like
Rru_A2013	SSF161098	MetI-like
Rru_A2014	SSF53850	Periplasmic binding protein-like II
Rru_A2015	SSF46565	Chaperone J-domain
Rru_A2015	SSF49493	HSP40/DnaJ peptide-binding domain
Rru_A2018	SSF143100	TTHA1013/TTHA0281-like
Rru_A2019	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2020	SSF143011	RelE-like
Rru_A2021	SSF56219	DNase I-like
Rru_A2023	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2024	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2025	SSF48613	Heme oxygenase-like
Rru_A2026	SSF54292	2Fe-2S ferredoxin-like
Rru_A2027	SSF53383	PLP-dependent transferases
Rru_A2028	SSF46785	"Winged helix" DNA-binding domain
Rru_A2029	SSF51161	Trimeric LpxA-like enzymes
Rru_A2030	SSF53474	alpha/beta-Hydrolases
Rru_A2031	SSF53067	Actin-like ATPase domain
Rru_A2032	SSF52374	Nucleotidylyl transferase
Rru_A2032	SSF55174	Alpha-L RNA-binding motif
Rru_A2033	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2033	SSF52172	CheY-like
Rru_A2033	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2033	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2035	SSF53850	Periplasmic binding protein-like II
Rru_A2036	SSF53146	Nitrogenase accessory factor-like
Rru_A2038	SSF52833	Thioredoxin-like
Rru_A2038	SSF81301	Nucleotidyltransferase
Rru_A2038	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rru_A2039	SSF53474	alpha/beta-Hydrolases
Rru_A2040	SSF75620	Release factor
Rru_A2041	SSF53383	PLP-dependent transferases
Rru_A2042	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2042	SSF51182	RmlC-like cupins
Rru_A2045	SSF161098	MetI-like
Rru_A2046	SSF161098	MetI-like
Rru_A2047	SSF53850	Periplasmic binding protein-like II
Rru_A2048	SSF50331	MOP-like
Rru_A2048	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2049	SSF46689	Homeodomain-like
Rru_A2049	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A2050	SSF111369	HlyD-like secretion proteins
Rru_A2051	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A2051	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A2051	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A2052	SSF56954	Outer membrane efflux proteins (OEP)
Rru_A2053	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rru_A2054	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2055	SSF52096	ClpP/crotonase
Rru_A2056	SSF53056	beta-carbonic anhydrase, cab
Rru_A2057	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2058	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2058	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2059	SSF109604	HD-domain/PDEase-like
Rru_A2060	SSF46548	alpha-helical ferredoxin
Rru_A2060	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A2060	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A2061	SSF50346	PRC-barrel domain
Rru_A2063	SSF46785	"Winged helix" DNA-binding domain
Rru_A2063	SSF48008	GntR ligand-binding domain-like
Rru_A2064	SSF51905	FAD/NAD(P)-binding domain
Rru_A2064	SSF54373	FAD-linked reductases, C-terminal domain
Rru_A2065	SSF54506	Diaminopimelate epimerase-like
Rru_A2066	SSF51569	Aldolase
Rru_A2068	SSF52335	Methylglyoxal synthase-like
Rru_A2070	SSF51905	FAD/NAD(P)-binding domain
Rru_A2071	SSF53720	ALDH-like
Rru_A2072	SSF50249	Nucleic acid-binding proteins
Rru_A2072	SSF55261	GAD domain-like
Rru_A2072	SSF55681	Class II aaRS and biotin synthetases
Rru_A2073	SSF47819	HRDC-like
Rru_A2073	SSF53098	Ribonuclease H-like
Rru_A2074	SSF53850	Periplasmic binding protein-like II
Rru_A2075	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2075	SSF53383	PLP-dependent transferases
Rru_A2076	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2078	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2079	SSF54368	Glutamine synthetase, N-terminal domain
Rru_A2079	SSF55931	Glutamine synthetase/guanido kinase
Rru_A2082	SSF47188	Hemerythrin-like
Rru_A2084	SSF53383	PLP-dependent transferases
Rru_A2085	SSF54913	GlnB-like
Rru_A2086	SSF54368	Glutamine synthetase, N-terminal domain
Rru_A2086	SSF55931	Glutamine synthetase/guanido kinase
Rru_A2087	SSF53850	Periplasmic binding protein-like II
Rru_A2088	SSF161098	MetI-like
Rru_A2089	SSF161098	MetI-like
Rru_A2090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2093	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2094	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A2094	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A2094	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A2095	SSF111369	HlyD-like secretion proteins
Rru_A2096	SSF46785	"Winged helix" DNA-binding domain
Rru_A2096	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2101	SSF46689	Homeodomain-like
Rru_A2101	SSF52172	CheY-like
Rru_A2101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2103	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rru_A2104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2106	SSF53822	Periplasmic binding protein-like I
Rru_A2107	SSF50249	Nucleic acid-binding proteins
Rru_A2107	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2108	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2108	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2108	SSF52172	CheY-like
Rru_A2108	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2108	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2109	SSF81923	Double Clp-N motif
Rru_A2110	SSF54736	ClpS-like
Rru_A2113	SSF56601	beta-lactamase/transpeptidase-like
Rru_A2115	SSF53738	Phosphoglucomutase, first 3 domains
Rru_A2115	SSF55957	Phosphoglucomutase, C-terminal domain
Rru_A2116	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A2116	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2116	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Rru_A2117	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2118	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2119	SSF50692	ADC-like
Rru_A2119	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Rru_A2120	SSF52151	FabD/lysophospholipase-like
Rru_A2120	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Rru_A2121	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2123	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2124	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2126	SSF56529	FAH
Rru_A2127	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2129	SSF48557	L-aspartase-like
Rru_A2133	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2135	SSF74650	Galactose mutarotase-like
Rru_A2135	SSF81296	E set domains
Rru_A2137	SSF53955	Lysozyme-like
Rru_A2140	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2140	SSF51306	LexA/Signal peptidase
Rru_A2141	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A2142	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2143	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2146	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2147	SSF53955	Lysozyme-like
Rru_A2147	SSF56601	beta-lactamase/transpeptidase-like
Rru_A2148	SSF53187	Zn-dependent exopeptidases
Rru_A2149	SSF50249	Nucleic acid-binding proteins
Rru_A2151	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A2152	SSF52161	Ribosomal protein L13
Rru_A2153	SSF74653	TolA/TonB C-terminal domain
Rru_A2156	SSF52096	ClpP/crotonase
Rru_A2157	SSF54001	Cysteine proteinases
Rru_A2158	SSF46689	Homeodomain-like
Rru_A2158	SSF52172	CheY-like
Rru_A2158	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2159	SSF102215	Creatininase
Rru_A2160	SSF109604	HD-domain/PDEase-like
Rru_A2160	SSF53067	Actin-like ATPase domain
Rru_A2161	SSF140356	PPK N-terminal domain-like
Rru_A2161	SSF143724	PHP14-like
Rru_A2161	SSF56024	Phospholipase D/nuclease
Rru_A2162	SSF53254	Phosphoglycerate mutase-like
Rru_A2163	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2167	SSF55326	PurM N-terminal domain-like
Rru_A2167	SSF56042	PurM C-terminal domain-like
Rru_A2168	SSF53328	Formyltransferase
Rru_A2169	SSF54919	Nucleoside diphosphate kinase, NDK
Rru_A2170	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2171	SSF53822	Periplasmic binding protein-like I
Rru_A2173	SSF53187	Zn-dependent exopeptidases
Rru_A2174	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2175	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2176	SSF161098	MetI-like
Rru_A2177	SSF161098	MetI-like
Rru_A2178	SSF53850	Periplasmic binding protein-like II
Rru_A2179	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2179	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Rru_A2180	SSF53474	alpha/beta-Hydrolases
Rru_A2181	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A2183	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2183	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A2184	SSF50475	FMN-binding split barrel
Rru_A2185	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2185	SSF52922	TK C-terminal domain-like
Rru_A2185	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rru_A2187	SSF56112	Protein kinase-like (PK-like)
Rru_A2191	SSF56801	Acetyl-CoA synthetase-like
Rru_A2192	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rru_A2193	SSF56112	Protein kinase-like (PK-like)
Rru_A2194	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A2195	SSF47240	Ferritin-like
Rru_A2197	SSF55821	YrdC/RibB
Rru_A2198	SSF118196	YaeB-like
Rru_A2200	SSF102400	DNA polymerase III chi subunit
Rru_A2201	SSF50156	PDZ domain-like
Rru_A2201	SSF50494	Trypsin-like serine proteases
Rru_A2202	SSF117892	Band 7/SPFH domain
Rru_A2203	SSF117892	Band 7/SPFH domain
Rru_A2204	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rru_A2204	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2205	SSF101738	SspB-like
Rru_A2206	SSF117457	FumA C-terminal domain-like
Rru_A2207	SSF159894	YgaC/TfoX-N like
Rru_A2210	SSF53254	Phosphoglycerate mutase-like
Rru_A2211	SSF56935	Porins
Rru_A2212	SSF56935	Porins
Rru_A2213	SSF48452	TPR-like
Rru_A2213	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2214	SSF46785	"Winged helix" DNA-binding domain
Rru_A2214	SSF53850	Periplasmic binding protein-like II
Rru_A2215	SSF46785	"Winged helix" DNA-binding domain
Rru_A2215	SSF53850	Periplasmic binding protein-like II
Rru_A2218	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2219	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Rru_A2220	SSF46600	C-terminal UvrC-binding domain of UvrB
Rru_A2220	SSF47781	RuvA domain 2-like
Rru_A2220	SSF82771	GIY-YIG endonuclease
Rru_A2222	SSF53218	Molybdenum cofactor biosynthesis proteins
Rru_A2222	SSF63867	MoeA C-terminal domain-like
Rru_A2222	SSF63882	MoeA N-terminal region -like
Rru_A2223	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Rru_A2224	SSF46785	"Winged helix" DNA-binding domain
Rru_A2225	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2225	SSF52172	CheY-like
Rru_A2226	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2226	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2227	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2228	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2228	SSF52172	CheY-like
Rru_A2228	SSF55073	Nucleotide cyclase
Rru_A2229	SSF52172	CheY-like
Rru_A2230	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2232	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2232	SSF52172	CheY-like
Rru_A2233	SSF46785	"Winged helix" DNA-binding domain
Rru_A2234	SSF52172	CheY-like
Rru_A2235	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2235	SSF55781	GAF domain-like
Rru_A2235	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2235	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2236	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2240	SSF52096	ClpP/crotonase
Rru_A2241	SSF46785	"Winged helix" DNA-binding domain
Rru_A2242	SSF51316	Mss4-like
Rru_A2243	SSF53474	alpha/beta-Hydrolases
Rru_A2244	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2245	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2246	SSF51161	Trimeric LpxA-like enzymes
Rru_A2246	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2249	SSF53383	PLP-dependent transferases
Rru_A2250	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2251	SSF53850	Periplasmic binding protein-like II
Rru_A2252	SSF161098	MetI-like
Rru_A2253	SSF161098	MetI-like
Rru_A2255	SSF53271	PRTase-like
Rru_A2256	SSF47175	Cytochromes
Rru_A2257	SSF46785	"Winged helix" DNA-binding domain
Rru_A2257	SSF53850	Periplasmic binding protein-like II
Rru_A2263	SSF56784	HAD-like
Rru_A2263	SSF81653	Calcium ATPase, transduction domain A
Rru_A2263	SSF81665	Calcium ATPase, transmembrane domain M
Rru_A2264	SSF54862	4Fe-4S ferredoxins
Rru_A2265	SSF51905	FAD/NAD(P)-binding domain
Rru_A2265	SSF54373	FAD-linked reductases, C-terminal domain
Rru_A2266	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2266	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A2267	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2269	SSF51569	Aldolase
Rru_A2270	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rru_A2271	SSF89360	HesB-like domain
Rru_A2273	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2274	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2275	SSF161098	MetI-like
Rru_A2276	SSF161098	MetI-like
Rru_A2277	SSF53850	Periplasmic binding protein-like II
Rru_A2279	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2282	SSF54862	4Fe-4S ferredoxins
Rru_A2284	SSF53146	Nitrogenase accessory factor-like
Rru_A2285	SSF53807	"Helical backbone" metal receptor
Rru_A2286	SSF53807	"Helical backbone" metal receptor
Rru_A2288	SSF81301	Nucleotidyltransferase
Rru_A2289	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2290	SSF50447	Translation proteins
Rru_A2290	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rru_A2290	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2291	SSF50494	Trypsin-like serine proteases
Rru_A2291	SSF54060	His-Me finger endonucleases
Rru_A2294	SSF51011	Glycosyl hydrolase domain
Rru_A2294	SSF51445	(Trans)glycosidases
Rru_A2295	SSF51445	(Trans)glycosidases
Rru_A2295	SSF81296	E set domains
Rru_A2297	SSF53613	Ribokinase-like
Rru_A2298	SSF74650	Galactose mutarotase-like
Rru_A2301	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2302	SSF53822	Periplasmic binding protein-like I
Rru_A2303	SSF51569	Aldolase
Rru_A2304	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A2305	SSF56784	HAD-like
Rru_A2307	SSF51905	FAD/NAD(P)-binding domain
Rru_A2308	SSF46785	"Winged helix" DNA-binding domain
Rru_A2309	SSF51905	FAD/NAD(P)-binding domain
Rru_A2309	SSF52821	Rhodanese/Cell cycle control phosphatase
Rru_A2309	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Rru_A2311	SSF46785	"Winged helix" DNA-binding domain
Rru_A2311	SSF55781	GAF domain-like
Rru_A2312	SSF56935	Porins
Rru_A2316	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2317	SSF51230	Single hybrid motif
Rru_A2317	SSF51246	Rudiment single hybrid motif
Rru_A2317	SSF51569	Aldolase
Rru_A2317	SSF52440	PreATP-grasp domain
Rru_A2317	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2317	SSF89000	post-HMGL domain-like
Rru_A2318	SSF103378	2-methylcitrate dehydratase PrpD
Rru_A2319	SSF48256	Citrate synthase
Rru_A2320	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A2321	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2322	SSF50341	CheW-like
Rru_A2323	SSF52172	CheY-like
Rru_A2323	SSF52738	Methylesterase CheB, C-terminal domain
Rru_A2324	SSF48371	ARM repeat
Rru_A2325	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Rru_A2325	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2326	SSF52172	CheY-like
Rru_A2327	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2327	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2327	SSF50341	CheW-like
Rru_A2327	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2329	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2330	SSF52172	CheY-like
Rru_A2332	SSF52172	CheY-like
Rru_A2333	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2334	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2335	SSF46689	Homeodomain-like
Rru_A2335	SSF51182	RmlC-like cupins
Rru_A2336	SSF103473	MFS general substrate transporter
Rru_A2337	SSF56935	Porins
Rru_A2338	SSF46689	Homeodomain-like
Rru_A2339	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2339	SSF90123	ABC transporter transmembrane region
Rru_A2340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2340	SSF90123	ABC transporter transmembrane region
Rru_A2345	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2347	SSF48452	TPR-like
Rru_A2348	SSF48452	TPR-like
Rru_A2348	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2348	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2349	SSF48452	TPR-like
Rru_A2349	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2350	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2351	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2353	SSF48452	TPR-like
Rru_A2354	SSF55154	CYTH-like phosphatases
Rru_A2356	SSF53850	Periplasmic binding protein-like II
Rru_A2357	SSF161098	MetI-like
Rru_A2358	SSF161098	MetI-like
Rru_A2359	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2360	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2361	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2361	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2361	SSF52172	CheY-like
Rru_A2361	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2361	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2362	SSF55068	Peptide methionine sulfoxide reductase
Rru_A2363	SSF56219	DNase I-like
Rru_A2364	SSF141255	YccV-like
Rru_A2365	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2366	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2367	SSF52172	CheY-like
Rru_A2368	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2369	SSF50952	Soluble quinoprotein glucose dehydrogenase
Rru_A2370	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2371	SSF51905	FAD/NAD(P)-binding domain
Rru_A2372	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A2372	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A2374	SSF56935	Porins
Rru_A2377	SSF47598	Ribbon-helix-helix
Rru_A2378	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2379	SSF47240	Ferritin-like
Rru_A2380	SSF103473	MFS general substrate transporter
Rru_A2381	SSF50814	Lipocalins
Rru_A2382	SSF161098	MetI-like
Rru_A2383	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2384	SSF161098	MetI-like
Rru_A2385	SSF53850	Periplasmic binding protein-like II
Rru_A2386	SSF54427	NTF2-like
Rru_A2387	SSF53807	"Helical backbone" metal receptor
Rru_A2388	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A2389	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2390	SSF53807	"Helical backbone" metal receptor
Rru_A2395	SSF56935	Porins
Rru_A2397	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A2397	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A2398	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2398	SSF52922	TK C-terminal domain-like
Rru_A2398	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rru_A2398	SSF54862	4Fe-4S ferredoxins
Rru_A2400	SSF51649	RuBisCo, C-terminal domain
Rru_A2400	SSF54966	RuBisCO, large subunit, small (N-terminal) domain
Rru_A2401	SSF46785	"Winged helix" DNA-binding domain
Rru_A2401	SSF53850	Periplasmic binding protein-like II
Rru_A2402	SSF51366	Ribulose-phoshate binding barrel
Rru_A2403	SSF56655	Carbohydrate phosphatase
Rru_A2404	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2405	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2405	SSF52922	TK C-terminal domain-like
Rru_A2406	SSF141868	EAL domain-like
Rru_A2406	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2406	SSF52172	CheY-like
Rru_A2406	SSF55073	Nucleotide cyclase
Rru_A2406	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2406	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2407	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2408	SSF64182	DHH phosphoesterases
Rru_A2409	SSF56655	Carbohydrate phosphatase
Rru_A2410	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2410	SSF55021	ACT-like
Rru_A2410	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A2411	SSF53383	PLP-dependent transferases
Rru_A2412	SSF103088	OmpA-like
Rru_A2413	SSF53474	alpha/beta-Hydrolases
Rru_A2417	SSF53850	Periplasmic binding protein-like II
Rru_A2418	SSF161098	MetI-like
Rru_A2419	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2420	SSF51161	Trimeric LpxA-like enzymes
Rru_A2421	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2421	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A2423	SSF53383	PLP-dependent transferases
Rru_A2424	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A2425	SSF48452	TPR-like
Rru_A2428	SSF52833	Thioredoxin-like
Rru_A2429	SSF143011	RelE-like
Rru_A2430	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2431	SSF117143	Flagellar hook protein flgE
Rru_A2432	SSF110399	ThiG-like
Rru_A2432	SSF54285	MoaD/ThiS
Rru_A2433	SSF52304	Type II 3-dehydroquinate dehydratase
Rru_A2434	SSF51230	Single hybrid motif
Rru_A2435	SSF51246	Rudiment single hybrid motif
Rru_A2435	SSF52440	PreATP-grasp domain
Rru_A2435	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2436	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2441	SSF51998	PFL-like glycyl radical enzymes
Rru_A2441	SSF75625	YebC-like
Rru_A2442	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2444	SSF46689	Homeodomain-like
Rru_A2444	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A2446	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2448	SSF159594	XCC0632-like
Rru_A2451	SSF55073	Nucleotide cyclase
Rru_A2456	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2456	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A2456	SSF55021	ACT-like
Rru_A2457	SSF55298	YjgF-like
Rru_A2458	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2459	SSF48452	TPR-like
Rru_A2460	SSF158472	HAMP domain-like
Rru_A2460	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2461	SSF54001	Cysteine proteinases
Rru_A2462	SSF55931	Glutamine synthetase/guanido kinase
Rru_A2463	SSF53187	Zn-dependent exopeptidases
Rru_A2464	SSF82544	GckA/TtuD-like
Rru_A2465	SSF50800	PK beta-barrel domain-like
Rru_A2465	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A2465	SSF52935	PK C-terminal domain-like
Rru_A2466	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rru_A2467	SSF57840	Ribosomal protein L36
Rru_A2468	SSF50037	C-terminal domain of transcriptional repressors
Rru_A2469	SSF50037	C-terminal domain of transcriptional repressors
Rru_A2470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2471	SSF46785	"Winged helix" DNA-binding domain
Rru_A2473	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2473	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2473	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2474	SSF53850	Periplasmic binding protein-like II
Rru_A2475	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2475	SSF54631	CBS-domain pair
Rru_A2476	SSF161098	MetI-like
Rru_A2477	SSF53850	Periplasmic binding protein-like II
Rru_A2478	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2479	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rru_A2479	SSF52242	Cobalamin (vitamin B12)-binding domain
Rru_A2480	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rru_A2480	SSF52242	Cobalamin (vitamin B12)-binding domain
Rru_A2483	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Rru_A2483	SSF56300	Metallo-dependent phosphatases
Rru_A2484	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2485	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2486	SSF53067	Actin-like ATPase domain
Rru_A2488	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2489	SSF56634	Heme-dependent catalase-like
Rru_A2490	SSF46689	Homeodomain-like
Rru_A2490	SSF51182	RmlC-like cupins
Rru_A2491	SSF103473	MFS general substrate transporter
Rru_A2492	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2493	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2494	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2495	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2497	SSF50447	Translation proteins
Rru_A2497	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2497	SSF54980	EF-G C-terminal domain-like
Rru_A2498	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2500	SSF52821	Rhodanese/Cell cycle control phosphatase
Rru_A2501	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2503	SSF51658	Xylose isomerase-like
Rru_A2504	SSF102114	Radical SAM enzymes
Rru_A2505	SSF47188	Hemerythrin-like
Rru_A2505	SSF52172	CheY-like
Rru_A2506	SSF52096	ClpP/crotonase
Rru_A2507	SSF53271	PRTase-like
Rru_A2508	SSF53383	PLP-dependent transferases
Rru_A2509	SSF51569	Aldolase
Rru_A2510	SSF46785	"Winged helix" DNA-binding domain
Rru_A2511	SSF53850	Periplasmic binding protein-like II
Rru_A2511	SSF55073	Nucleotide cyclase
Rru_A2511	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2512	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2513	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A2514	SSF55166	Hedgehog/DD-peptidase
Rru_A2515	SSF53850	Periplasmic binding protein-like II
Rru_A2516	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2516	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2516	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2517	SSF56801	Acetyl-CoA synthetase-like
Rru_A2520	SSF50199	Staphylococcal nuclease
Rru_A2520	SSF53955	Lysozyme-like
Rru_A2520	SSF56601	beta-lactamase/transpeptidase-like
Rru_A2521	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2521	SSF52980	Restriction endonuclease-like
Rru_A2522	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2523	SSF46785	"Winged helix" DNA-binding domain
Rru_A2526	SSF55718	SCP-like
Rru_A2528	SSF64518	Phase 1 flagellin
Rru_A2529	SSF64518	Phase 1 flagellin
Rru_A2532	SSF117143	Flagellar hook protein flgE
Rru_A2534	SSF64518	Phase 1 flagellin
Rru_A2536	SSF101116	Flagellar export chaperone FliS
Rru_A2537	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A2537	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A2540	SSF103473	MFS general substrate transporter
Rru_A2542	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2543	SSF52833	Thioredoxin-like
Rru_A2544	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2544	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2546	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2547	SSF53187	Zn-dependent exopeptidases
Rru_A2548	SSF53955	Lysozyme-like
Rru_A2549	SSF56784	HAD-like
Rru_A2550	SSF89796	CoA-transferase family III (CaiB/BaiF)
Rru_A2553	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2554	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2555	SSF55073	Nucleotide cyclase
Rru_A2556	SSF51604	Enolase C-terminal domain-like
Rru_A2556	SSF54826	Enolase N-terminal domain-like
Rru_A2557	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2558	SSF54001	Cysteine proteinases
Rru_A2559	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2560	SSF54001	Cysteine proteinases
Rru_A2562	SSF50341	CheW-like
Rru_A2567	SSF55073	Nucleotide cyclase
Rru_A2568	SSF89360	HesB-like domain
Rru_A2569	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rru_A2570	SSF53383	PLP-dependent transferases
Rru_A2571	SSF101960	Stabilizer of iron transporter SufD
Rru_A2572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2573	SSF101960	Stabilizer of iron transporter SufD
Rru_A2574	SSF46785	"Winged helix" DNA-binding domain
Rru_A2576	SSF51011	Glycosyl hydrolase domain
Rru_A2576	SSF51445	(Trans)glycosidases
Rru_A2576	SSF81296	E set domains
Rru_A2577	SSF51011	Glycosyl hydrolase domain
Rru_A2577	SSF51445	(Trans)glycosidases
Rru_A2577	SSF81296	E set domains
Rru_A2578	SSF51055	Carbohydrate binding domain
Rru_A2593	SSF55073	Nucleotide cyclase
Rru_A2594	SSF55073	Nucleotide cyclase
Rru_A2599	SSF54909	Dimeric alpha+beta barrel
Rru_A2601	SSF46785	"Winged helix" DNA-binding domain
Rru_A2601	SSF55811	Nudix
Rru_A2602	SSF141868	EAL domain-like
Rru_A2602	SSF158472	HAMP domain-like
Rru_A2602	SSF55073	Nucleotide cyclase
Rru_A2603	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2603	SSF52172	CheY-like
Rru_A2604	SSF141868	EAL domain-like
Rru_A2604	SSF55073	Nucleotide cyclase
Rru_A2605	SSF53697	SIS domain
Rru_A2606	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2606	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2612	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2613	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2613	SSF56112	Protein kinase-like (PK-like)
Rru_A2614	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2614	SSF51182	RmlC-like cupins
Rru_A2615	SSF46785	"Winged helix" DNA-binding domain
Rru_A2616	SSF52768	Arginase/deacetylase
Rru_A2617	SSF116842	XseB-like
Rru_A2618	SSF48576	Terpenoid synthases
Rru_A2619	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2619	SSF52922	TK C-terminal domain-like
Rru_A2620	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2620	SSF55174	Alpha-L RNA-binding motif
Rru_A2621	SSF52096	ClpP/crotonase
Rru_A2623	SSF103263	Chorismate synthase, AroC
Rru_A2624	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2626	SSF46565	Chaperone J-domain
Rru_A2626	SSF49493	HSP40/DnaJ peptide-binding domain
Rru_A2627	SSF50475	FMN-binding split barrel
Rru_A2628	SSF160240	Cation efflux protein cytoplasmic domain-like
Rru_A2628	SSF161111	Cation efflux protein transmembrane domain-like
Rru_A2629	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A2630	SSF53067	Actin-like ATPase domain
Rru_A2631	SSF50475	FMN-binding split barrel
Rru_A2632	SSF47090	PGBD-like
Rru_A2633	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2635	SSF46785	"Winged helix" DNA-binding domain
Rru_A2635	SSF51206	cAMP-binding domain-like
Rru_A2636	SSF46785	"Winged helix" DNA-binding domain
Rru_A2636	SSF51206	cAMP-binding domain-like
Rru_A2637	SSF56784	HAD-like
Rru_A2638	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2639	SSF48452	TPR-like
Rru_A2639	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2641	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2642	SSF53474	alpha/beta-Hydrolases
Rru_A2643	SSF51695	PLC-like phosphodiesterases
Rru_A2648	SSF51905	FAD/NAD(P)-binding domain
Rru_A2649	SSF51445	(Trans)glycosidases
Rru_A2651	SSF53383	PLP-dependent transferases
Rru_A2652	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A2654	SSF54975	Acylphosphatase/BLUF domain-like
Rru_A2656	SSF160909	ATP12-like
Rru_A2658	SSF56784	HAD-like
Rru_A2659	SSF55120	Pseudouridine synthase
Rru_A2659	SSF55174	Alpha-L RNA-binding motif
Rru_A2660	SSF48019	post-AAA+ oligomerization domain-like
Rru_A2660	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2661	SSF55073	Nucleotide cyclase
Rru_A2662	SSF50156	PDZ domain-like
Rru_A2662	SSF50494	Trypsin-like serine proteases
Rru_A2663	SSF64263	Prokaryotic ribosomal protein L17
Rru_A2664	SSF47789	C-terminal domain of RNA polymerase alpha subunit
Rru_A2664	SSF55257	RBP11-like subunits of RNA polymerase
Rru_A2664	SSF56553	Insert subdomain of RNA polymerase alpha subunit
Rru_A2665	SSF53137	Translational machinery components
Rru_A2666	SSF46946	S13-like H2TH domain
Rru_A2667	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2668	SSF103491	Preprotein translocase SecY subunit
Rru_A2669	SSF52080	Ribosomal proteins L15p and L18e
Rru_A2670	SSF55129	Ribosomal protein L30p/L7e
Rru_A2671	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A2671	SSF54768	dsRNA-binding domain-like
Rru_A2672	SSF53137	Translational machinery components
Rru_A2673	SSF56053	Ribosomal protein L6
Rru_A2674	SSF56047	Ribosomal protein S8
Rru_A2675	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rru_A2676	SSF55282	RL5-like
Rru_A2677	SSF50104	Translation proteins SH3-like domain
Rru_A2678	SSF50193	Ribosomal protein L14
Rru_A2679	SSF50249	Nucleic acid-binding proteins
Rru_A2680	SSF46561	Ribosomal protein L29 (L29p)
Rru_A2681	SSF54686	Ribosomal protein L16p/L10e
Rru_A2682	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rru_A2682	SSF54821	Ribosomal protein S3 C-terminal domain
Rru_A2683	SSF54843	Ribosomal protein L22
Rru_A2684	SSF54570	Ribosomal protein S19
Rru_A2685	SSF50104	Translation proteins SH3-like domain
Rru_A2685	SSF50249	Nucleic acid-binding proteins
Rru_A2686	SSF54189	Ribosomal proteins S24e, L23 and L15e
Rru_A2687	SSF52166	Ribosomal protein L4
Rru_A2688	SSF50447	Translation proteins
Rru_A2689	SSF54999	Ribosomal protein S10
Rru_A2690	SSF50447	Translation proteins
Rru_A2690	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rru_A2690	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2691	SSF50447	Translation proteins
Rru_A2691	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2691	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A2691	SSF54980	EF-G C-terminal domain-like
Rru_A2692	SSF47973	Ribosomal protein S7
Rru_A2693	SSF50249	Nucleic acid-binding proteins
Rru_A2694	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rru_A2695	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Rru_A2696	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Rru_A2696	SSF54736	ClpS-like
Rru_A2697	SSF160369	Ribosomal protein L10-like
Rru_A2698	SSF56808	Ribosomal protein L1
Rru_A2699	SSF46906	Ribosomal protein L11, C-terminal domain
Rru_A2699	SSF54747	Ribosomal L11/L12e N-terminal domain
Rru_A2700	SSF50104	Translation proteins SH3-like domain
Rru_A2700	SSF82679	N-utilization substance G protein NusG, N-terminal domain
Rru_A2702	SSF50447	Translation proteins
Rru_A2702	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Rru_A2702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2703	SSF55315	L30e-like
Rru_A2703	SSF75217	alpha/beta knot
Rru_A2706	SSF54523	Pili subunits
Rru_A2707	SSF53474	alpha/beta-Hydrolases
Rru_A2709	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A2710	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A2710	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2710	SSF56719	Type II DNA topoisomerase
Rru_A2711	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2712	SSF46689	Homeodomain-like
Rru_A2712	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A2717	SSF52499	Isochorismatase-like hydrolases
Rru_A2718	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2719	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A2719	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2720	SSF54862	4Fe-4S ferredoxins
Rru_A2721	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2721	SSF52922	TK C-terminal domain-like
Rru_A2721	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
Rru_A2722	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Rru_A2723	SSF47240	Ferritin-like
Rru_A2724	SSF53474	alpha/beta-Hydrolases
Rru_A2725	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2725	SSF52172	CheY-like
Rru_A2725	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2725	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2726	SSF52172	CheY-like
Rru_A2732	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2733	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2734	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2735	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2736	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2737	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2738	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2738	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2739	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2740	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2741	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2742	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2743	SSF102114	Radical SAM enzymes
Rru_A2745	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2746	SSF53383	PLP-dependent transferases
Rru_A2747	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2748	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2750	SSF111369	HlyD-like secretion proteins
Rru_A2752	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2752	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2753	SSF54001	Cysteine proteinases
Rru_A2754	SSF50249	Nucleic acid-binding proteins
Rru_A2755	SSF55781	GAF domain-like
Rru_A2757	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2758	SSF52172	CheY-like
Rru_A2759	SSF56821	Prismane protein-like
Rru_A2763	SSF141868	EAL domain-like
Rru_A2763	SSF55073	Nucleotide cyclase
Rru_A2763	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2764	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2765	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2766	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rru_A2767	SSF50249	Nucleic acid-binding proteins
Rru_A2768	SSF52972	ITPase-like
Rru_A2769	SSF52788	Phosphotyrosine protein phosphatases I
Rru_A2771	SSF53720	ALDH-like
Rru_A2772	SSF53850	Periplasmic binding protein-like II
Rru_A2774	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A2775	SSF53474	alpha/beta-Hydrolases
Rru_A2776	SSF110857	Gamma-glutamyl cyclotransferase-like
Rru_A2777	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A2778	SSF143011	RelE-like
Rru_A2779	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2780	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A2782	SSF46785	"Winged helix" DNA-binding domain
Rru_A2782	SSF53850	Periplasmic binding protein-like II
Rru_A2785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2788	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A2788	SSF51556	Metallo-dependent hydrolases
Rru_A2789	SSF103473	MFS general substrate transporter
Rru_A2789	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2790	SSF46785	"Winged helix" DNA-binding domain
Rru_A2791	SSF51283	dUTPase-like
Rru_A2792	SSF69796	Thymidylate synthase-complementing protein Thy1
Rru_A2794	SSF51283	dUTPase-like
Rru_A2795	SSF55008	HMA, heavy metal-associated domain
Rru_A2796	SSF56784	HAD-like
Rru_A2796	SSF81653	Calcium ATPase, transduction domain A
Rru_A2801	SSF52833	Thioredoxin-like
Rru_A2802	SSF46626	Cytochrome c
Rru_A2803	SSF52833	Thioredoxin-like
Rru_A2804	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2810	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2810	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Rru_A2811	SSF102114	Radical SAM enzymes
Rru_A2812	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2813	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
Rru_A2814	SSF54285	MoaD/ThiS
Rru_A2815	SSF54690	Molybdopterin synthase subunit MoaE
Rru_A2816	SSF46689	Homeodomain-like
Rru_A2818	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Rru_A2818	SSF50447	Translation proteins
Rru_A2818	SSF55186	ThrRS/AlaRS common domain
Rru_A2818	SSF55681	Class II aaRS and biotin synthetases
Rru_A2819	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2819	SSF54752	RecA protein, C-terminal domain
Rru_A2820	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2820	SSF52172	CheY-like
Rru_A2820	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2820	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2821	SSF160544	EscU C-terminal domain-like
Rru_A2827	SSF160544	EscU C-terminal domain-like
Rru_A2832	SSF48452	TPR-like
Rru_A2836	SSF75708	Chemotaxis phosphatase CheZ
Rru_A2837	SSF52172	CheY-like
Rru_A2838	SSF158791	MgtE N-terminal domain-like
Rru_A2840	SSF101801	Surface presentation of antigens (SPOA)
Rru_A2840	SSF103039	CheC-like
Rru_A2842	SSF117143	Flagellar hook protein flgE
Rru_A2843	SSF117143	Flagellar hook protein flgE
Rru_A2847	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
Rru_A2847	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rru_A2853	SSF64518	Phase 1 flagellin
Rru_A2854	SSF48452	TPR-like
Rru_A2854	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2855	SSF48452	TPR-like
Rru_A2858	SSF64518	Phase 1 flagellin
Rru_A2859	SSF48452	TPR-like
Rru_A2859	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2860	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2861	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2862	SSF53474	alpha/beta-Hydrolases
Rru_A2863	SSF46689	Homeodomain-like
Rru_A2864	SSF47473	EF-hand
Rru_A2865	SSF53092	Creatinase/prolidase N-terminal domain
Rru_A2865	SSF55920	Creatinase/aminopeptidase
Rru_A2866	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2867	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2868	SSF158472	HAMP domain-like
Rru_A2868	SSF55073	Nucleotide cyclase
Rru_A2870	SSF54631	CBS-domain pair
Rru_A2870	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A2871	SSF53187	Zn-dependent exopeptidases
Rru_A2871	SSF55031	Bacterial exopeptidase dimerisation domain
Rru_A2873	SSF53822	Periplasmic binding protein-like I
Rru_A2874	SSF51905	FAD/NAD(P)-binding domain
Rru_A2875	SSF46785	"Winged helix" DNA-binding domain
Rru_A2875	SSF53850	Periplasmic binding protein-like II
Rru_A2876	SSF51430	NAD(P)-linked oxidoreductase
Rru_A2877	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A2877	SSF55021	ACT-like
Rru_A2880	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A2881	SSF53474	alpha/beta-Hydrolases
Rru_A2882	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A2882	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A2883	SSF56731	DNA primase core
Rru_A2883	SSF57783	Zinc beta-ribbon
Rru_A2884	SSF89095	GatB/YqeY motif
Rru_A2885	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
Rru_A2885	SSF52317	Class I glutamine amidotransferase-like
Rru_A2886	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
Rru_A2886	SSF52335	Methylglyoxal synthase-like
Rru_A2886	SSF52440	PreATP-grasp domain
Rru_A2886	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2887	SSF46557	GreA transcript cleavage protein, N-terminal domain
Rru_A2887	SSF54534	FKBP-like
Rru_A2889	SSF88723	PIN domain-like
Rru_A2892	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A2893	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A2894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2895	SSF53807	"Helical backbone" metal receptor
Rru_A2896	SSF46785	"Winged helix" DNA-binding domain
Rru_A2896	SSF54909	Dimeric alpha+beta barrel
Rru_A2897	SSF52833	Thioredoxin-like
Rru_A2898	SSF51905	FAD/NAD(P)-binding domain
Rru_A2899	SSF46785	"Winged helix" DNA-binding domain
Rru_A2899	SSF53850	Periplasmic binding protein-like II
Rru_A2900	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A2901	SSF54197	HIT-like
Rru_A2903	SSF48173	Cryptochrome/photolyase FAD-binding domain
Rru_A2903	SSF52425	Cryptochrome/photolyase, N-terminal domain
Rru_A2905	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A2906	SSF46785	"Winged helix" DNA-binding domain
Rru_A2906	SSF54909	Dimeric alpha+beta barrel
Rru_A2907	SSF52091	SpoIIaa-like
Rru_A2909	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2911	SSF159594	XCC0632-like
Rru_A2913	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2913	SSF52172	CheY-like
Rru_A2914	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2914	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2916	SSF56214	4'-phosphopantetheinyl transferase
Rru_A2920	SSF48452	TPR-like
Rru_A2921	SSF48452	TPR-like
Rru_A2921	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2923	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2924	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A2925	SSF103473	MFS general substrate transporter
Rru_A2926	SSF56954	Outer membrane efflux proteins (OEP)
Rru_A2927	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A2927	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A2927	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A2928	SSF111369	HlyD-like secretion proteins
Rru_A2929	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A2929	SSF52172	CheY-like
Rru_A2930	SSF158472	HAMP domain-like
Rru_A2930	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2930	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2931	SSF55205	EPT/RTPC-like
Rru_A2934	SSF141868	EAL domain-like
Rru_A2935	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A2935	SSF52172	CheY-like
Rru_A2935	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A2935	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2936	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A2936	SSF51556	Metallo-dependent hydrolases
Rru_A2937	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A2937	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A2938	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2939	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A2940	SSF103025	Folate-binding domain
Rru_A2941	SSF47413	lambda repressor-like DNA-binding domains
Rru_A2942	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2942	SSF90123	ABC transporter transmembrane region
Rru_A2944	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2946	SSF118116	DNA mismatch repair protein MutL
Rru_A2946	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A2946	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A2947	SSF53697	SIS domain
Rru_A2948	SSF88723	PIN domain-like
Rru_A2950	SSF48576	Terpenoid synthases
Rru_A2951	SSF54913	GlnB-like
Rru_A2952	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2954	SSF55681	Class II aaRS and biotin synthetases
Rru_A2955	SSF109604	HD-domain/PDEase-like
Rru_A2956	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A2956	SSF52009	Phosphohistidine domain
Rru_A2956	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A2959	SSF103473	MFS general substrate transporter
Rru_A2962	SSF50129	GroES-like
Rru_A2962	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2964	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A2965	SSF52374	Nucleotidylyl transferase
Rru_A2965	SSF82114	Riboflavin kinase-like
Rru_A2966	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A2966	SSF50677	ValRS/IleRS/LeuRS editing domain
Rru_A2966	SSF52374	Nucleotidylyl transferase
Rru_A2969	SSF50447	Translation proteins
Rru_A2969	SSF55186	ThrRS/AlaRS common domain
Rru_A2970	SSF53790	Tetrapyrrole methylase
Rru_A2971	SSF103473	MFS general substrate transporter
Rru_A2972	SSF63411	LuxS/MPP-like metallohydrolase
Rru_A2973	SSF63411	LuxS/MPP-like metallohydrolase
Rru_A2974	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
Rru_A2975	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
Rru_A2976	SSF56918	Light-harvesting complex subunits
Rru_A2977	SSF56918	Light-harvesting complex subunits
Rru_A2978	SSF53807	"Helical backbone" metal receptor
Rru_A2979	SSF53807	"Helical backbone" metal receptor
Rru_A2980	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2981	SSF50129	GroES-like
Rru_A2981	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A2982	SSF46785	"Winged helix" DNA-binding domain
Rru_A2982	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2983	SSF48576	Terpenoid synthases
Rru_A2984	SSF51905	FAD/NAD(P)-binding domain
Rru_A2985	SSF159245	AttH-like
Rru_A2986	SSF51905	FAD/NAD(P)-binding domain
Rru_A2986	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Rru_A2987	SSF103501	Respiratory nitrate reductase 1 gamma chain
Rru_A2987	SSF54862	4Fe-4S ferredoxins
Rru_A2989	SSF53790	Tetrapyrrole methylase
Rru_A2990	SSF53790	Tetrapyrrole methylase
Rru_A2991	SSF63965	Precorrin-8X methylmutase CbiC/CobH
Rru_A2992	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A2992	SSF53790	Tetrapyrrole methylase
Rru_A2994	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2996	SSF111342	CbiD-like
Rru_A2997	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A2997	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A2997	SSF75138	HprK N-terminal domain-like
Rru_A2998	SSF53067	Actin-like ATPase domain
Rru_A2999	SSF102114	Radical SAM enzymes
Rru_A3000	SSF51998	PFL-like glycyl radical enzymes
Rru_A3002	SSF52499	Isochorismatase-like hydrolases
Rru_A3003	SSF46785	"Winged helix" DNA-binding domain
Rru_A3003	SSF48008	GntR ligand-binding domain-like
Rru_A3004	SSF53383	PLP-dependent transferases
Rru_A3005	SSF57802	Rubredoxin-like
Rru_A3006	SSF63829	Calcium-dependent phosphotriesterase
Rru_A3007	SSF55136	Probable bacterial effector-binding domain
Rru_A3009	SSF53383	PLP-dependent transferases
Rru_A3010	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A3010	SSF46785	"Winged helix" DNA-binding domain
Rru_A3011	SSF52499	Isochorismatase-like hydrolases
Rru_A3012	SSF161098	MetI-like
Rru_A3013	SSF161098	MetI-like
Rru_A3014	SSF50331	MOP-like
Rru_A3014	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3015	SSF53850	Periplasmic binding protein-like II
Rru_A3016	SSF56112	Protein kinase-like (PK-like)
Rru_A3017	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3021	SSF52980	Restriction endonuclease-like
Rru_A3026	SSF53795	PEP carboxykinase-like
Rru_A3027	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3028	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3028	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A3029	SSF53697	SIS domain
Rru_A3029	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A3030	SSF51161	Trimeric LpxA-like enzymes
Rru_A3030	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3031	SSF56784	HAD-like
Rru_A3032	SSF142906	YjbR-like
Rru_A3033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3034	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3035	SSF50199	Staphylococcal nuclease
Rru_A3036	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3037	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3038	SSF158682	TerB-like
Rru_A3039	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3039	SSF52172	CheY-like
Rru_A3039	SSF55781	GAF domain-like
Rru_A3039	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3039	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3040	SSF53383	PLP-dependent transferases
Rru_A3041	SSF46785	"Winged helix" DNA-binding domain
Rru_A3041	SSF53383	PLP-dependent transferases
Rru_A3042	SSF50494	Trypsin-like serine proteases
Rru_A3046	SSF102114	Radical SAM enzymes
Rru_A3048	SSF53383	PLP-dependent transferases
Rru_A3049	SSF53383	PLP-dependent transferases
Rru_A3050	SSF51230	Single hybrid motif
Rru_A3051	SSF101790	Aminomethyltransferase beta-barrel domain
Rru_A3051	SSF103025	Folate-binding domain
Rru_A3053	SSF56112	Protein kinase-like (PK-like)
Rru_A3054	SSF53098	Ribonuclease H-like
Rru_A3055	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3056	SSF103473	MFS general substrate transporter
Rru_A3057	SSF52833	Thioredoxin-like
Rru_A3058	SSF52833	Thioredoxin-like
Rru_A3059	SSF143456	VC0467-like
Rru_A3061	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3062	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
Rru_A3062	SSF52242	Cobalamin (vitamin B12)-binding domain
Rru_A3063	SSF50129	GroES-like
Rru_A3063	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3064	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Rru_A3064	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Rru_A3065	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3066	SSF52218	Flavoproteins
Rru_A3067	SSF46689	Homeodomain-like
Rru_A3068	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3069	SSF143011	RelE-like
Rru_A3070	SSF46785	"Winged helix" DNA-binding domain
Rru_A3070	SSF54909	Dimeric alpha+beta barrel
Rru_A3071	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3072	SSF50182	Sm-like ribonucleoproteins
Rru_A3072	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Rru_A3072	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Rru_A3073	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Rru_A3076	SSF89028	Cobalamin adenosyltransferase-like
Rru_A3077	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3078	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3078	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A3079	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A3079	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3082	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3083	SSF52218	Flavoproteins
Rru_A3084	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3085	SSF50998	Quinoprotein alcohol dehydrogenase-like
Rru_A3090	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3091	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3091	SSF88713	Glycoside hydrolase/deacetylase
Rru_A3092	SSF51126	Pectin lyase-like
Rru_A3096	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3097	SSF48452	TPR-like
Rru_A3100	SSF53795	PEP carboxykinase-like
Rru_A3103	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3103	SSF55781	GAF domain-like
Rru_A3103	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3104	SSF46689	Homeodomain-like
Rru_A3104	SSF52172	CheY-like
Rru_A3104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3105	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3107	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3108	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3109	SSF47336	ACP-like
Rru_A3109	SSF52777	CoA-dependent acyltransferases
Rru_A3109	SSF53474	alpha/beta-Hydrolases
Rru_A3109	SSF56801	Acetyl-CoA synthetase-like
Rru_A3110	SSF51206	cAMP-binding domain-like
Rru_A3110	SSF52151	FabD/lysophospholipase-like
Rru_A3111	SSF56300	Metallo-dependent phosphatases
Rru_A3112	SSF55103	FAD-linked oxidases, C-terminal domain
Rru_A3112	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A3113	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3114	SSF88713	Glycoside hydrolase/deacetylase
Rru_A3115	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3116	SSF56935	Porins
Rru_A3119	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3121	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3121	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A3122	SSF47336	ACP-like
Rru_A3123	SSF53474	alpha/beta-Hydrolases
Rru_A3124	SSF53474	alpha/beta-Hydrolases
Rru_A3125	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3126	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3127	SSF50475	FMN-binding split barrel
Rru_A3128	SSF46689	Homeodomain-like
Rru_A3128	SSF51182	RmlC-like cupins
Rru_A3130	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3131	SSF111369	HlyD-like secretion proteins
Rru_A3132	SSF55073	Nucleotide cyclase
Rru_A3132	SSF55781	GAF domain-like
Rru_A3132	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3134	SSF56801	Acetyl-CoA synthetase-like
Rru_A3135	SSF50621	Alanine racemase C-terminal domain-like
Rru_A3135	SSF51419	PLP-binding barrel
Rru_A3136	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3137	SSF141868	EAL domain-like
Rru_A3137	SSF55073	Nucleotide cyclase
Rru_A3137	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3138	SSF53822	Periplasmic binding protein-like I
Rru_A3139	SSF46785	"Winged helix" DNA-binding domain
Rru_A3139	SSF48008	GntR ligand-binding domain-like
Rru_A3141	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3142	SSF142764	YgbK-like
Rru_A3143	SSF53639	AraD/HMP-PK domain-like
Rru_A3145	SSF74650	Galactose mutarotase-like
Rru_A3145	SSF81296	E set domains
Rru_A3148	SSF56436	C-type lectin-like
Rru_A3150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3151	SSF53300	vWA-like
Rru_A3152	SSF81901	HCP-like
Rru_A3154	SSF53067	Actin-like ATPase domain
Rru_A3156	SSF53300	vWA-like
Rru_A3157	SSF50494	Trypsin-like serine proteases
Rru_A3158	SSF140736	Rv1873-like
Rru_A3159	SSF103473	MFS general substrate transporter
Rru_A3160	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3162	SSF53850	Periplasmic binding protein-like II
Rru_A3162	SSF55021	ACT-like
Rru_A3163	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3165	SSF56655	Carbohydrate phosphatase
Rru_A3166	SSF53850	Periplasmic binding protein-like II
Rru_A3167	SSF161098	MetI-like
Rru_A3168	SSF161098	MetI-like
Rru_A3169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3170	SSF101801	Surface presentation of antigens (SPOA)
Rru_A3173	SSF46689	Homeodomain-like
Rru_A3173	SSF48498	Tetracyclin repressor-like, C-terminal domain
Rru_A3174	SSF103473	MFS general substrate transporter
Rru_A3175	SSF55931	Glutamine synthetase/guanido kinase
Rru_A3175	SSF89095	GatB/YqeY motif
Rru_A3176	SSF75304	Amidase signature (AS) enzymes
Rru_A3177	SSF141000	Glu-tRNAGln amidotransferase C subunit
Rru_A3178	SSF53098	Ribonuclease H-like
Rru_A3179	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3180	SSF109604	HD-domain/PDEase-like
Rru_A3180	SSF55781	GAF domain-like
Rru_A3184	SSF46626	Cytochrome c
Rru_A3184	SSF81342	Transmembrane di-heme cytochromes
Rru_A3187	SSF52172	CheY-like
Rru_A3188	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3188	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3190	SSF53671	Aspartate/ornithine carbamoyltransferase
Rru_A3191	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A3191	SSF51556	Metallo-dependent hydrolases
Rru_A3193	SSF47616	GST C-terminal domain-like
Rru_A3193	SSF52833	Thioredoxin-like
Rru_A3194	SSF102405	MCP/YpsA-like
Rru_A3195	SSF47598	Ribbon-helix-helix
Rru_A3196	SSF143011	RelE-like
Rru_A3197	SSF143100	TTHA1013/TTHA0281-like
Rru_A3197	SSF47598	Ribbon-helix-helix
Rru_A3199	SSF53850	Periplasmic binding protein-like II
Rru_A3200	SSF161098	MetI-like
Rru_A3201	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3202	SSF56712	Prokaryotic type I DNA topoisomerase
Rru_A3202	SSF57783	Zinc beta-ribbon
Rru_A3203	SSF50249	Nucleic acid-binding proteins
Rru_A3204	SSF50156	PDZ domain-like
Rru_A3204	SSF52096	ClpP/crotonase
Rru_A3205	SSF57829	Zn-binding ribosomal proteins
Rru_A3206	SSF52172	CheY-like
Rru_A3209	SSF53098	Ribonuclease H-like
Rru_A3210	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3211	SSF47188	Hemerythrin-like
Rru_A3212	SSF75708	Chemotaxis phosphatase CheZ
Rru_A3213	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3213	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3213	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3214	SSF53383	PLP-dependent transferases
Rru_A3219	SSF53807	"Helical backbone" metal receptor
Rru_A3220	SSF56935	Porins
Rru_A3222	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A3223	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3226	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3227	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3228	SSF55961	Bet v1-like
Rru_A3229	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A3229	SSF52172	CheY-like
Rru_A3230	SSF141868	EAL domain-like
Rru_A3230	SSF54631	CBS-domain pair
Rru_A3230	SSF55073	Nucleotide cyclase
Rru_A3231	SSF52317	Class I glutamine amidotransferase-like
Rru_A3232	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rru_A3233	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A3234	SSF63411	LuxS/MPP-like metallohydrolase
Rru_A3235	SSF111369	HlyD-like secretion proteins
Rru_A3236	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3237	SSF56954	Outer membrane efflux proteins (OEP)
Rru_A3240	SSF47598	Ribbon-helix-helix
Rru_A3241	SSF46458	Globin-like
Rru_A3241	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3242	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3245	SSF81333	F1F0 ATP synthase subunit C
Rru_A3246	SSF81336	F1F0 ATP synthase subunit A
Rru_A3248	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3248	SSF75553	Smc hinge domain
Rru_A3249	SSF52833	Thioredoxin-like
Rru_A3251	SSF48150	DNA-glycosylase
Rru_A3251	SSF55811	Nudix
Rru_A3252	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3257	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rru_A3258	SSF51998	PFL-like glycyl radical enzymes
Rru_A3259	SSF110857	Gamma-glutamyl cyclotransferase-like
Rru_A3262	SSF48452	TPR-like
Rru_A3262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3263	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A3263	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3264	SSF53383	PLP-dependent transferases
Rru_A3265	SSF48600	Chorismate mutase II
Rru_A3266	SSF53474	alpha/beta-Hydrolases
Rru_A3267	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3269	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3270	SSF56281	Metallo-hydrolase/oxidoreductase
Rru_A3271	SSF47616	GST C-terminal domain-like
Rru_A3271	SSF52833	Thioredoxin-like
Rru_A3272	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3273	SSF160904	Jann2411-like
Rru_A3275	SSF118352	HSP33 redox switch-like
Rru_A3275	SSF64397	Hsp33 domain
Rru_A3276	SSF53671	Aspartate/ornithine carbamoyltransferase
Rru_A3277	SSF53383	PLP-dependent transferases
Rru_A3278	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3281	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A3281	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3282	SSF46689	Homeodomain-like
Rru_A3284	SSF50249	Nucleic acid-binding proteins
Rru_A3285	SSF52172	CheY-like
Rru_A3285	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A3287	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Rru_A3287	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Rru_A3288	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3289	SSF111331	NAD kinase/diacylglycerol kinase-like
Rru_A3290	SSF56300	Metallo-dependent phosphatases
Rru_A3292	SSF64518	Phase 1 flagellin
Rru_A3294	SSF52833	Thioredoxin-like
Rru_A3295	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3296	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3296	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3296	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3299	SSF51445	(Trans)glycosidases
Rru_A3299	SSF52279	Beta-D-glucan exohydrolase, C-terminal domain
Rru_A3300	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3300	SSF90123	ABC transporter transmembrane region
Rru_A3302	SSF48208	Six-hairpin glycosidases
Rru_A3303	SSF53822	Periplasmic binding protein-like I
Rru_A3304	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3305	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3309	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3311	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3312	SSF53041	Resolvase-like
Rru_A3316	SSF56349	DNA breaking-rejoining enzymes
Rru_A3318	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A3319	SSF53271	PRTase-like
Rru_A3320	SSF52374	Nucleotidylyl transferase
Rru_A3321	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A3322	SSF46785	"Winged helix" DNA-binding domain
Rru_A3322	SSF51206	cAMP-binding domain-like
Rru_A3324	SSF55008	HMA, heavy metal-associated domain
Rru_A3324	SSF56784	HAD-like
Rru_A3324	SSF81653	Calcium ATPase, transduction domain A
Rru_A3324	SSF81665	Calcium ATPase, transmembrane domain M
Rru_A3326	SSF54862	4Fe-4S ferredoxins
Rru_A3328	SSF103088	OmpA-like
Rru_A3329	SSF102114	Radical SAM enzymes
Rru_A3330	SSF46626	Cytochrome c
Rru_A3331	SSF46626	Cytochrome c
Rru_A3332	SSF81442	Cytochrome c oxidase subunit I-like
Rru_A3333	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3333	SSF88697	PUA domain-like
Rru_A3335	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3337	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3341	SSF53633	Carbamate kinase-like
Rru_A3342	SSF51569	Aldolase
Rru_A3343	SSF56784	HAD-like
Rru_A3344	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3345	SSF141868	EAL domain-like
Rru_A3345	SSF55073	Nucleotide cyclase
Rru_A3345	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3347	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3349	SSF55136	Probable bacterial effector-binding domain
Rru_A3350	SSF56420	Peptide deformylase
Rru_A3351	SSF50486	FMT C-terminal domain-like
Rru_A3351	SSF53328	Formyltransferase
Rru_A3352	SSF55120	Pseudouridine synthase
Rru_A3353	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3356	SSF53474	alpha/beta-Hydrolases
Rru_A3357	SSF46689	Homeodomain-like
Rru_A3357	SSF48150	DNA-glycosylase
Rru_A3357	SSF55945	TATA-box binding protein-like
Rru_A3357	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
Rru_A3358	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rru_A3358	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rru_A3359	SSF52317	Class I glutamine amidotransferase-like
Rru_A3359	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3360	SSF52833	Thioredoxin-like
Rru_A3362	SSF53790	Tetrapyrrole methylase
Rru_A3363	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3363	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3363	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3365	SSF50447	Translation proteins
Rru_A3365	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3365	SSF54980	EF-G C-terminal domain-like
Rru_A3367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3368	SSF46785	"Winged helix" DNA-binding domain
Rru_A3368	SSF53850	Periplasmic binding protein-like II
Rru_A3370	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3371	SSF50129	GroES-like
Rru_A3371	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3372	SSF75217	alpha/beta knot
Rru_A3374	SSF55073	Nucleotide cyclase
Rru_A3374	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3375	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3376	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3377	SSF53474	alpha/beta-Hydrolases
Rru_A3378	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3379	SSF48452	TPR-like
Rru_A3381	SSF52317	Class I glutamine amidotransferase-like
Rru_A3381	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3383	SSF159664	CobE/GbiG C-terminal domain-like
Rru_A3384	SSF53790	Tetrapyrrole methylase
Rru_A3385	SSF103088	OmpA-like
Rru_A3387	SSF53901	Thiolase-like
Rru_A3390	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A3391	SSF55073	Nucleotide cyclase
Rru_A3392	SSF47598	Ribbon-helix-helix
Rru_A3393	SSF53955	Lysozyme-like
Rru_A3393	SSF56601	beta-lactamase/transpeptidase-like
Rru_A3395	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A3395	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
Rru_A3396	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3398	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3399	SSF46785	"Winged helix" DNA-binding domain
Rru_A3400	SSF53850	Periplasmic binding protein-like II
Rru_A3401	SSF161098	MetI-like
Rru_A3402	SSF161098	MetI-like
Rru_A3403	SSF50331	MOP-like
Rru_A3403	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3404	SSF116726	TrkA C-terminal domain-like
Rru_A3405	SSF50129	GroES-like
Rru_A3405	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3406	SSF53474	alpha/beta-Hydrolases
Rru_A3407	SSF53784	Phosphofructokinase
Rru_A3408	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3411	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3412	SSF51338	Composite domain of metallo-dependent hydrolases
Rru_A3412	SSF51556	Metallo-dependent hydrolases
Rru_A3413	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3414	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3417	SSF53822	Periplasmic binding protein-like I
Rru_A3418	SSF46689	Homeodomain-like
Rru_A3419	SSF53795	PEP carboxykinase-like
Rru_A3419	SSF68923	PEP carboxykinase N-terminal domain
Rru_A3420	SSF50475	FMN-binding split barrel
Rru_A3421	SSF110087	DR1885-like metal-binding protein
Rru_A3422	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A3422	SSF52172	CheY-like
Rru_A3423	SSF158472	HAMP domain-like
Rru_A3423	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3423	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3424	SSF51366	Ribulose-phoshate binding barrel
Rru_A3425	SSF51366	Ribulose-phoshate binding barrel
Rru_A3427	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A3428	SSF51366	Ribulose-phoshate binding barrel
Rru_A3430	SSF52096	ClpP/crotonase
Rru_A3431	SSF53244	MurD-like peptide ligases, peptide-binding domain
Rru_A3431	SSF53623	MurD-like peptide ligases, catalytic domain
Rru_A3432	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3433	SSF52833	Thioredoxin-like
Rru_A3434	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3434	SSF52980	Restriction endonuclease-like
Rru_A3435	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3436	SSF53448	Nucleotide-diphospho-sugar transferases
Rru_A3437	SSF56112	Protein kinase-like (PK-like)
Rru_A3438	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3439	SSF51905	FAD/NAD(P)-binding domain
Rru_A3441	SSF46785	"Winged helix" DNA-binding domain
Rru_A3443	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3443	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3443	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3444	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3444	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A3445	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Rru_A3445	SSF51621	Phosphoenolpyruvate/pyruvate domain
Rru_A3445	SSF52009	Phosphohistidine domain
Rru_A3446	SSF55594	HPr-like
Rru_A3447	SSF53062	PTS system fructose IIA component-like
Rru_A3448	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3449	SSF53795	PEP carboxykinase-like
Rru_A3450	SSF55895	Ribonuclease Rh-like
Rru_A3452	SSF56935	Porins
Rru_A3453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3454	SSF161098	MetI-like
Rru_A3455	SSF161098	MetI-like
Rru_A3456	SSF53850	Periplasmic binding protein-like II
Rru_A3458	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3460	SSF48452	TPR-like
Rru_A3460	SSF51206	cAMP-binding domain-like
Rru_A3461	SSF53067	Actin-like ATPase domain
Rru_A3462	SSF50249	Nucleic acid-binding proteins
Rru_A3463	SSF54909	Dimeric alpha+beta barrel
Rru_A3464	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3465	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3466	SSF53383	PLP-dependent transferases
Rru_A3467	SSF55909	Pentein
Rru_A3468	SSF46785	"Winged helix" DNA-binding domain
Rru_A3468	SSF54909	Dimeric alpha+beta barrel
Rru_A3471	SSF111304	Recombination protein RecR
Rru_A3472	SSF82607	YbaB-like
Rru_A3473	SSF48019	post-AAA+ oligomerization domain-like
Rru_A3473	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3474	SSF47240	Ferritin-like
Rru_A3475	SSF82649	SufE/NifU
Rru_A3476	SSF46785	"Winged helix" DNA-binding domain
Rru_A3476	SSF53850	Periplasmic binding protein-like II
Rru_A3477	SSF103473	MFS general substrate transporter
Rru_A3478	SSF55073	Nucleotide cyclase
Rru_A3478	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3479	SSF51161	Trimeric LpxA-like enzymes
Rru_A3480	SSF53187	Zn-dependent exopeptidases
Rru_A3480	SSF55031	Bacterial exopeptidase dimerisation domain
Rru_A3482	SSF46785	"Winged helix" DNA-binding domain
Rru_A3483	SSF103473	MFS general substrate transporter
Rru_A3484	SSF111369	HlyD-like secretion proteins
Rru_A3487	SSF52954	Class II aaRS ABD-related
Rru_A3487	SSF55186	ThrRS/AlaRS common domain
Rru_A3487	SSF55681	Class II aaRS and biotin synthetases
Rru_A3487	SSF81271	TGS-like
Rru_A3488	SSF54364	Translation initiation factor IF3, N-terminal domain
Rru_A3488	SSF55200	Translation initiation factor IF3, C-terminal domain
Rru_A3490	SSF56300	Metallo-dependent phosphatases
Rru_A3492	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A3492	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3492	SSF52172	CheY-like
Rru_A3492	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3493	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Rru_A3494	SSF141868	EAL domain-like
Rru_A3494	SSF52172	CheY-like
Rru_A3495	SSF81901	HCP-like
Rru_A3496	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3497	SSF158442	DsbB-like
Rru_A3498	SSF47240	Ferritin-like
Rru_A3502	SSF47175	Cytochromes
Rru_A3503	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Rru_A3504	SSF56801	Acetyl-CoA synthetase-like
Rru_A3505	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3506	SSF53822	Periplasmic binding protein-like I
Rru_A3509	SSF56801	Acetyl-CoA synthetase-like
Rru_A3510	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3511	SSF52016	LeuD/IlvD-like
Rru_A3511	SSF53732	Aconitase iron-sulfur domain
Rru_A3512	SSF52317	Class I glutamine amidotransferase-like
Rru_A3513	SSF158472	HAMP domain-like
Rru_A3513	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3514	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Rru_A3514	SSF53098	Ribonuclease H-like
Rru_A3514	SSF56672	DNA/RNA polymerases
Rru_A3514	SSF88723	PIN domain-like
Rru_A3515	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3517	SSF103473	MFS general substrate transporter
Rru_A3518	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A3518	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3519	SSF46785	"Winged helix" DNA-binding domain
Rru_A3521	SSF143034	L35p-like
Rru_A3522	SSF74731	Ribosomal protein L20
Rru_A3523	SSF46589	tRNA-binding arm
Rru_A3523	SSF55681	Class II aaRS and biotin synthetases
Rru_A3524	SSF46955	Putative DNA-binding domain
Rru_A3524	SSF50249	Nucleic acid-binding proteins
Rru_A3524	SSF54991	Anticodon-binding domain of PheRS
Rru_A3524	SSF55681	Class II aaRS and biotin synthetases
Rru_A3524	SSF56037	PheT/TilS domain
Rru_A3526	SSF69786	YggU-like
Rru_A3530	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
Rru_A3530	SSF56672	DNA/RNA polymerases
Rru_A3531	SSF110836	Hypothetical protein SAV1430
Rru_A3531	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Rru_A3532	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3535	SSF52374	Nucleotidylyl transferase
Rru_A3536	SSF55469	FMN-dependent nitroreductase-like
Rru_A3537	SSF47598	Ribbon-helix-helix
Rru_A3539	SSF55021	ACT-like
Rru_A3539	SSF81301	Nucleotidyltransferase
Rru_A3539	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Rru_A3539	SSF81891	Poly A polymerase C-terminal region-like
Rru_A3541	SSF48334	DNA repair protein MutS, domain III
Rru_A3541	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3541	SSF53150	DNA repair protein MutS, domain II
Rru_A3541	SSF55271	DNA repair protein MutS, domain I
Rru_A3542	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3542	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rru_A3542	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Rru_A3543	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3543	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3543	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3544	SSF109755	PhoU-like
Rru_A3546	SSF52317	Class I glutamine amidotransferase-like
Rru_A3546	SSF56322	ADC synthase
Rru_A3548	SSF102114	Radical SAM enzymes
Rru_A3549	SSF52317	Class I glutamine amidotransferase-like
Rru_A3549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3550	SSF52317	Class I glutamine amidotransferase-like
Rru_A3550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3551	SSF51430	NAD(P)-linked oxidoreductase
Rru_A3552	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
Rru_A3554	SSF46565	Chaperone J-domain
Rru_A3554	SSF49493	HSP40/DnaJ peptide-binding domain
Rru_A3554	SSF57938	DnaJ/Hsp40 cysteine-rich domain
Rru_A3555	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Rru_A3555	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Rru_A3555	SSF53067	Actin-like ATPase domain
Rru_A3559	SSF46565	Chaperone J-domain
Rru_A3560	SSF141868	EAL domain-like
Rru_A3560	SSF55073	Nucleotide cyclase
Rru_A3560	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3561	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3561	SSF90123	ABC transporter transmembrane region
Rru_A3563	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3564	SSF56784	HAD-like
Rru_A3565	SSF144091	Rhomboid-like
Rru_A3566	SSF48452	TPR-like
Rru_A3567	SSF69618	HemD-like
Rru_A3568	SSF53850	Periplasmic binding protein-like II
Rru_A3568	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Rru_A3569	SSF53067	Actin-like ATPase domain
Rru_A3571	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Rru_A3571	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3572	SSF54909	Dimeric alpha+beta barrel
Rru_A3573	SSF88697	PUA domain-like
Rru_A3574	SSF50022	ISP domain
Rru_A3575	SSF56801	Acetyl-CoA synthetase-like
Rru_A3576	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3577	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3580	SSF103481	Multidrug resistance efflux transporter EmrE
Rru_A3581	SSF55248	PCD-like
Rru_A3582	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rru_A3583	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3583	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3586	SSF54106	LysM domain
Rru_A3588	SSF81342	Transmembrane di-heme cytochromes
Rru_A3589	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3589	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3591	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3592	SSF54197	HIT-like
Rru_A3593	SSF101386	all-alpha NTP pyrophosphatases
Rru_A3594	SSF51366	Ribulose-phoshate binding barrel
Rru_A3595	SSF51366	Ribulose-phoshate binding barrel
Rru_A3596	SSF52317	Class I glutamine amidotransferase-like
Rru_A3597	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3598	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3599	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Rru_A3600	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3601	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3602	SSF160443	SMR domain-like
Rru_A3603	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A3605	SSF100950	NagB/RpiA/CoA transferase-like
Rru_A3605	SSF46548	alpha-helical ferredoxin
Rru_A3607	SSF50685	Barwin-like endoglucanases
Rru_A3608	SSF54427	NTF2-like
Rru_A3610	SSF54611	SecB-like
Rru_A3611	SSF53098	Ribonuclease H-like
Rru_A3612	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3613	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3613	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rru_A3614	SSF52972	ITPase-like
Rru_A3616	SSF51726	UROD/MetE-like
Rru_A3617	SSF53800	Chelatase
Rru_A3619	SSF50249	Nucleic acid-binding proteins
Rru_A3619	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3619	SSF68912	Rho N-terminal domain-like
Rru_A3620	SSF50129	GroES-like
Rru_A3620	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3621	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Rru_A3621	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Rru_A3622	SSF48208	Six-hairpin glycosidases
Rru_A3622	SSF52833	Thioredoxin-like
Rru_A3624	SSF116878	TrmE connector domain
Rru_A3624	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3625	SSF51905	FAD/NAD(P)-binding domain
Rru_A3626	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3627	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3628	SSF109709	KorB DNA-binding domain-like
Rru_A3628	SSF110849	ParB/Sulfiredoxin
Rru_A3629	SSF48019	post-AAA+ oligomerization domain-like
Rru_A3629	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3631	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Rru_A3631	SSF50677	ValRS/IleRS/LeuRS editing domain
Rru_A3631	SSF52374	Nucleotidylyl transferase
Rru_A3633	SSF51391	Thiamin phosphate synthase
Rru_A3634	SSF51419	PLP-binding barrel
Rru_A3637	SSF142695	RibA-like
Rru_A3638	SSF46894	C-terminal effector domain of the bipartite response regulators
Rru_A3638	SSF52172	CheY-like
Rru_A3639	SSF102114	Radical SAM enzymes
Rru_A3640	SSF52972	ITPase-like
Rru_A3641	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3641	SSF55666	Ribonuclease PH domain 2-like
Rru_A3642	SSF46785	"Winged helix" DNA-binding domain
Rru_A3642	SSF55781	GAF domain-like
Rru_A3643	SSF51064	Head domain of nucleotide exchange factor GrpE
Rru_A3643	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
Rru_A3644	SSF52141	Uracil-DNA glycosylase-like
Rru_A3645	SSF52467	DHS-like NAD/FAD-binding domain
Rru_A3646	SSF52788	Phosphotyrosine protein phosphatases I
Rru_A3648	SSF56112	Protein kinase-like (PK-like)
Rru_A3649	SSF55144	LigT-like
Rru_A3650	SSF52266	SGNH hydrolase
Rru_A3651	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3652	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3654	SSF117782	YbjQ-like
Rru_A3655	SSF52335	Methylglyoxal synthase-like
Rru_A3655	SSF53927	Cytidine deaminase-like
Rru_A3656	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3656	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3658	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Rru_A3660	SSF48013	NusB-like
Rru_A3660	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3661	SSF103473	MFS general substrate transporter
Rru_A3663	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3663	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Rru_A3664	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3665	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Rru_A3667	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3668	SSF55826	YbaK/ProRS associated domain
Rru_A3670	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3671	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A3675	SSF47616	GST C-terminal domain-like
Rru_A3675	SSF52833	Thioredoxin-like
Rru_A3681	SSF101874	YceI-like
Rru_A3682	SSF81342	Transmembrane di-heme cytochromes
Rru_A3683	SSF101874	YceI-like
Rru_A3684	SSF48452	TPR-like
Rru_A3684	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3685	SSF46785	"Winged helix" DNA-binding domain
Rru_A3685	SSF54909	Dimeric alpha+beta barrel
Rru_A3686	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3686	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A3688	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3689	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Rru_A3690	SSF52440	PreATP-grasp domain
Rru_A3690	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A3692	SSF52980	Restriction endonuclease-like
Rru_A3693	SSF53790	Tetrapyrrole methylase
Rru_A3694	SSF53822	Periplasmic binding protein-like I
Rru_A3695	SSF56801	Acetyl-CoA synthetase-like
Rru_A3696	SSF56219	DNase I-like
Rru_A3697	SSF56529	FAH
Rru_A3698	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Rru_A3699	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Rru_A3699	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Rru_A3699	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Rru_A3700	SSF111369	HlyD-like secretion proteins
Rru_A3701	SSF46689	Homeodomain-like
Rru_A3702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3703	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Rru_A3704	SSF53807	"Helical backbone" metal receptor
Rru_A3705	SSF46785	"Winged helix" DNA-binding domain
Rru_A3705	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3706	SSF53383	PLP-dependent transferases
Rru_A3707	SSF51905	FAD/NAD(P)-binding domain
Rru_A3709	SSF158997	Trm112p-like
Rru_A3710	SSF88697	PUA domain-like
Rru_A3711	SSF48452	TPR-like
Rru_A3711	SSF52833	Thioredoxin-like
Rru_A3713	SSF143081	BB1717-like
Rru_A3715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3719	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3721	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3722	SSF51445	(Trans)glycosidases
Rru_A3723	SSF52440	PreATP-grasp domain
Rru_A3723	SSF54001	Cysteine proteinases
Rru_A3723	SSF56059	Glutathione synthetase ATP-binding domain-like
Rru_A3724	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3728	SSF53822	Periplasmic binding protein-like I
Rru_A3729	SSF102215	Creatininase
Rru_A3730	SSF53774	Glutaminase/Asparaginase
Rru_A3731	SSF46785	"Winged helix" DNA-binding domain
Rru_A3731	SSF48008	GntR ligand-binding domain-like
Rru_A3732	SSF75708	Chemotaxis phosphatase CheZ
Rru_A3734	SSF52374	Nucleotidylyl transferase
Rru_A3737	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3738	SSF47823	lambda integrase-like, N-terminal domain
Rru_A3738	SSF56349	DNA breaking-rejoining enzymes
Rru_A3740	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3741	SSF56796	Dehydroquinate synthase-like
Rru_A3742	SSF54631	CBS-domain pair
Rru_A3743	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A3744	SSF54631	CBS-domain pair
Rru_A3746	SSF50715	Ribosomal protein L25-like
Rru_A3747	SSF53178	Peptidyl-tRNA hydrolase-like
Rru_A3748	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3748	SSF81271	TGS-like
Rru_A3749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3751	SSF52402	Adenine nucleotide alpha hydrolases-like
Rru_A3751	SSF69864	Argininosuccinate synthetase, C-terminal domain
Rru_A3752	SSF103247	TT1751-like
Rru_A3755	SSF49764	HSP20-like chaperones
Rru_A3756	SSF47384	Homodimeric domain of signal transducing histidine kinase
Rru_A3756	SSF52172	CheY-like
Rru_A3756	SSF55785	PYP-like sensor domain (PAS domain)
Rru_A3756	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Rru_A3757	SSF46955	Putative DNA-binding domain
Rru_A3760	SSF46785	"Winged helix" DNA-binding domain
Rru_A3760	SSF53383	PLP-dependent transferases
Rru_A3761	SSF53067	Actin-like ATPase domain
Rru_A3762	SSF55166	Hedgehog/DD-peptidase
Rru_A3763	SSF53067	Actin-like ATPase domain
Rru_A3764	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3765	SSF64307	SirA-like
Rru_A3767	SSF46785	"Winged helix" DNA-binding domain
Rru_A3768	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Rru_A3769	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Rru_A3770	SSF102114	Radical SAM enzymes
Rru_A3771	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3771	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Rru_A3772	SSF55486	Metalloproteases ("zincins"), catalytic domain
Rru_A3773	SSF54631	CBS-domain pair
Rru_A3773	SSF56176	FAD-binding/transporter-associated domain-like
Rru_A3774	SSF56317	Carbon-nitrogen hydrolase
Rru_A3775	SSF47413	lambda repressor-like DNA-binding domains
Rru_A3776	SSF55973	S-adenosylmethionine synthetase
Rru_A3777	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3778	SSF74942	YhbC-like, C-terminal domain
Rru_A3778	SSF75420	YhbC-like, N-terminal domain
Rru_A3779	SSF47794	Rad51 N-terminal domain-like
Rru_A3779	SSF50249	Nucleic acid-binding proteins
Rru_A3779	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Rru_A3779	SSF69705	Transcription factor NusA, N-terminal domain
Rru_A3780	SSF55315	L30e-like
Rru_A3780	SSF64376	YlxR-like
Rru_A3781	SSF50447	Translation proteins
Rru_A3781	SSF52156	Initiation factor IF2/eIF5b, domain 3
Rru_A3781	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Rru_A3782	SSF89919	Ribosome-binding factor A, RbfA
Rru_A3783	SSF55120	Pseudouridine synthase
Rru_A3784	SSF47060	S15/NS1 RNA-binding domain
Rru_A3785	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Rru_A3785	SSF50249	Nucleic acid-binding proteins
Rru_A3785	SSF54211	Ribosomal protein S5 domain 2-like
Rru_A3785	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Rru_A3785	SSF55666	Ribonuclease PH domain 2-like
Rru_A3786	SSF51695	PLC-like phosphodiesterases
Rru_A3787	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Rru_A3788	SSF46785	"Winged helix" DNA-binding domain
Rru_A3790	SSF51735	NAD(P)-binding Rossmann-fold domains
Rru_A3790	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Rru_A3792	SSF75169	DsrEFH-like
Rru_A3793	SSF69572	Activating enzymes of the ubiquitin-like proteins
Rru_A3794	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Rru_A3795	SSF46785	"Winged helix" DNA-binding domain
Rru_A3796	SSF102645	CoaB-like
Rru_A3796	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Rru_A3797	SSF56112	Protein kinase-like (PK-like)
Rru_A3798	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Rru_A3799	SSF46946	S13-like H2TH domain
Rru_A3799	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Rru_A3799	SSF81624	N-terminal domain of MutM-like DNA repair proteins
Rru_A3801	SSF52096	ClpP/crotonase
Rru_A3802	SSF46992	Ribosomal protein S20