        dnaA    1817 ..    1829 +  -4.7  -3.50853   CGTCTGCGGTTGAAA                GGGAG GCG CCCCC                TTCTCCTTGCGGGCG  52 85
   Rru_A0002    3164 ..    3196 +  -5.6  -3.68351   CCTGGAGGGCCAAGG     GGC-GTCGTGGTCGAG CGG CT-GACCCTGACCGCC     TTTCGCTGCTACGAC  57 79
        recF    4311 ..    4329 +  -4.5  -2.74144   AGCAAAGCCCCCGTT            G-CCGGCT TTCG GGCCGGAC             CTTTCCACGTAGACA  43 39
        gyrB    6903 ..    6938 + -19.8  -3.53091   CCCCTCCTGCCGACT    AAAAACCCCCGCTGGC GCAA GCCGGCGGGGGTTTTG     TTTGGGAAAAACCGT 100 158
   Rru_A0005 NONE
   Rru_A0006    8714 ..    8749 +   -22  -3.54741   TAAACTCCCCCCACA    GAAAACCCCCGCTGGC GCAA GCCAGCGGGGGTTTTG     TTTGGCCGGGTCCTC 100 82
   Rru_A0016   18410 ..   18427 +  -8.3  -4.18018   ACCGGCCGCTCCATT             GCGGCGC CTCC GCTCCGC              TTTTGCCTGAGCAGA  75 57
   Rru_A0018 NONE
   Rru_A0019   25778 ..   25810 + -18.5  -2.71011   ATCGCCGCCTTTCAA     C-CCGGCCCGCCTC CTTCCC GAGGCGGGCCGGCG      TCGTTCAGAGCAAAT  86 53
   Rru_A0022   27824 ..   27866 +    -4  -3.65812   CTCACGCGTTGACGG GGCGGCTCCGCCGGCCCAT ATCGGC ATG-GCCGGAAGGATCGCC TTGTCTTACCGGGAC  51 83
   Rru_A0023   28381 ..   28411 +  -7.5   -2.9162   GATCGCTGGGGGATT      GCTCTCGGG-GGCGG TGG TCGCCGCCCG-GCGC      TGGTTTCCACCCTTG  51 77
   Rru_A0024   29648 ..   29691 + -10.3  -3.61268   CTTAAGATAGGGCCT CCGAAGGGGGAGCGGCCGGG GTTTG CCCAGCC-CTTTTCCTTTGG TTTGGCCATTCCCTC  73 74
   Rru_A0025 NONE
   Rru_A0026 NONE
   Rru_A0027   32509 ..   32522 +  -2.4  -5.64873   GGTCCACCGGACAAA               GGAA ATGATG TTCC                TTTTTTGTTCTTAAG  95 201
   Rru_A0031   35996 ..   36026 + -10.2  -3.83026   TGAAGACCGCCGGCG       GCGGCGGCGCCGGT TTG GCCGGCGAGGGCGC       TTTGGTCTGGGCGCC  74 301
   Rru_A0042   45337 ..   45351 +  -8.5   -3.5627   CGGCTTTCCGAGAGA               CCGCG ATGCC CGCGG               TTTGCCCCGTCCTGT  64 231
   Rru_A0043 NONE
   Rru_A0044   46829 ..   46861 +  -2.7  -3.27525   GCATGAAAGCAGCCT    TCG-GCCC--TCCGGC ATCC GCCGGATCGGGCCCGC     TTGAGTTTCGACCCG  44 55
   Rru_A0045 NONE
   Rru_A0046   48778 ..   48788 +  -2.4  -3.57185   GAGCAAATCATCGTC                 GCGC TCT GCTC                 TCTTCTTTGGATCGA  49 120
   Rru_A0054   60086 ..   60110 + -21.5  -4.19238   TATTCATTAAGAAAA          GGGCCGCATCC CGG GGATGCGGCCC          TTTTCCAATTCAAGA 100 57
   Rru_A0056   62455 ..   62469 +  -2.7  -2.52543   GGGCCGTTCCCGAAT               CGCGC TCCTC GCGGG               TGCGTTCGACCACAT  39 415
   Rru_A0059   67468 ..   67514 +  -6.3  -5.13343   CCAGATTTCGCGCTC CCTGCCCTAGGGCGCGGGCCCG CAGC CGGGCCC-CGGCGGACGGCGGC TTTTGTTTTCCGTTC  85 121
   Rru_A0060   68922 ..   68943 + -17.3  -4.45544   CAGGGCCAGCAGAAT           GGGCGCCAC CACC GTGGCGCCC            TTTTCGTTGATGCCC 100 143
   Rru_A0066 NONE
   Rru_A0067   78893 ..   78931 +  -5.1  -3.53012   TAGGCGGTAGGGATC   GGCGCGCTGGTCGTGTT CCTCC ATCGAGGTCAGCTCGCC   TTTGAGAAAGGCCCC  54 84
   Rru_A0071   82949 ..   82977 + -21.7  -4.95758   GCTGAGTGACACGCA        CCCCGCCCCCCGA TGA TCGGAGGGCGGGG        TTTTTGTCGTCTGGT 100 72
   Rru_A0073   85682 ..   85695 +  -5.2  -3.54129   TGCCCGAGTAGGCGC               GGGC GCTCCG GCCC                TTTCGGGGGGATCTC  52 30
   Rru_A0074 NONE
   Rru_A0075   89531 ..   89558 +  -9.7  -5.00616   CACCATCAGGACTCC        GGCCCGGACCG GACCTG CGGCCCGGGGC         TTTTTTCCAAAGCGG 100 131
   Rru_A0076   90100 ..   90118 +  -3.9  -4.08216   CGCCCGGGACGCCGC            CG-GAAAG CCGC CTTTCGCG             TTTTCCGCGCGCTCC  59 89
   Rru_A0077   90564 ..   90608 + -11.5  -3.60473   TTGAGCAACGCCCTT CCA-GTCT-TGGTCGGCGCCG CTTGA CGGCGCCGACGGCGGACTTGG TTACTTTGATCTGTC  77 37
   Rru_A0078   91010 ..   91029 +  -2.1  -4.26188   GGGACAGTGCTTGGG            CCGGA GATCAGGCGA TCCGG             TTTTGAGTCTGTGGG  60 121
   Rru_A0079   91740 ..   91773 + -13.2  -3.21276   CGTTGTCGCCGGTTT     CAACGGAGGTCGTC GTTTCA GAGGGCCTCCGTTG      TCTTATGGAGCGAGG  78 58
   Rru_A0083 NONE
   Rru_A0084 NONE
   Rru_A0085 NONE
   Rru_A0086 NONE
   Rru_A0087 NONE
   Rru_A0088  102554 ..  102567 +  -5.9  -4.56597   GTTCCGGCGGAAAAG               GCGGT CGCG GCCGC                TTTTTCCGCCAAGCC  74 48
   Rru_A0089  104558 ..  104574 +  -5.7  -3.28712   GCGCCGATTCACCGG              TGCCGAG TCC CCCGGCG              TTCTGAAAACCGCCG  52 42
   Rru_A0090 NONE
   Rru_A0091  105663 ..  105673 +  -2.4  -4.56775   GTGCGAGAAAAACGT                 CGCC TGG GTCG                 TTTTTCACGAGGGAT  66 191
   Rru_A0092  107142 ..  107153 +  -7.2  -3.53012   GACTCCATCGCCCAG                GCCC GTTA GGGC                 TTTGGGCGCAAAAGC  58 17
   Rru_A0093 NONE
   Rru_A0094 NONE
   Rru_A0095  110580 ..  110601 +  -4.3  -4.11692   GGCCTTGAGACGGCT           TACCTCGGC TTCG GCCAAGGTC            TTTTCCCGGTCGATG  62 480
   Rru_A0103  117574 ..  117619 + -10.1  -3.86015   ATTGGCCCCTGACCC GGGCCTTCCGGCCCCCCCCCT TGCC AAGGGGCGTCCCGGCCGGCCC TTTATCACGGGCCTA  78 312
   Rru_A0104  123012 ..  123063 +  -2.8  -2.52676   GGCGGCTGTCGATCG CCGCCCGCTGACCGCGCCGATGAC ACCGCC GGGA-CGGCGCGGG-ATCGGGCGA TGGCTTCGCCGCCTC  37 15
   Rru_A0105  125183 ..  125209 +   -13   -3.1886   TTTCGGTATAGGAAT         GAGCGTGGGGAG ACG TTCCCCAGGCTC         TTCCTGGCCTTCCGT  74 57
   Rru_A0106 NONE
   Rru_A0107 NONE
   Rru_A0108  127706 ..  127738 +  -7.7  -2.62616   CCCCGGCCCGGGGAG     GGGCGATGAGAGCG CCGGTC CGC-CGCATTGCCC      TGCTCTGCGCCCTGA  52 139
   Rru_A0109 NONE
   Rru_A0110 NONE
   Rru_A0111 NONE
   Rru_A0112 NONE
   Rru_A0113 NONE
   Rru_A0114 NONE
   Rru_A0115 NONE
   Rru_A0116 NONE
   Rru_A0117  138444 ..  138454 +  -2.4  -2.74144   CGGCGGTACGCAGGG                 CCAG GGC CAGG                 GTTTGGGGATCGCGG  38 405
   Rru_A0120  141673 ..  141692 +  -7.8  -2.78816   GATCGCGCCCTGCGC            CGCGCTGT CGCC AAAGCGCG             TCTCGTCCAGGCTCA  51 336
   Rru_A0124 NONE
   Rru_A0125 NONE
   Rru_A0126 NONE
   Rru_A0127  149055 ..  149081 +  -3.5  -3.79747   GGCCGTGTTCCAAGC         GCTCCAACGGC TTGTC GGCGCTGGCGC         TTTCATCGTCCGTCG  57 469
   Rru_A0131  154673 ..  154693 +  -6.8  -3.64703   GGGTGGCGCGAAACA            GCGCCG CCAGGGTTT CGGCGC            TTTCGGTAGGCGCCA  61 509
   Rru_A0133  157082 ..  157105 +  -5.1  -3.05844   CGGCCGAGCGCGATT          GCGCCCGCG GCCCTG CGCGGACCC           TCTTGGGCTCGCGGA  46 46
   Rru_A0134  158657 ..  158673 +  -3.6  -3.01791   ATATCTGTGCATGGG              CGGGAT CTGAA AGCCCG              TATTGACGGAAGGGT  43 16
   Rru_A0135  159362 ..  159377 +    -6  -3.03124   CAGGATGAGGGGGGC              GCGGCC TGCG GGCCGG               TCTTGCCGACTCCCG  49 86
   Rru_A0136  160355 ..  160369 +  -4.2  -2.90492   ACGGTGAGGCCAAGG               CGCC ATTTCCC GGCG               TGTGATGGTTGTTTC  45 34
   Rru_A0137 NONE
   Rru_A0138  163080 ..  163105 +  -3.1  -4.61231   TGCAATTGTTTTGGT         GCGGTGCGCGG AAGG CTGGGCATGGC          TTTTTCCGGGTATCG  70 101
   Rru_A0139  163673 ..  163683 +  -3.2  -2.96152   GCCAACAGCGCGATC                 CGTA ACA TGCG                 TATATCGCTTGATGT  42 62
   Rru_A0140  164808 ..  164829 +  -2.2   -3.2218   CTTCCCGGAGGGCGG           CCCGA-CCG TTCAT CGGATCGAG           TTGGTAGGTCTTGCG  44 354
   Rru_A0143  167716 ..  167743 +    -9  -3.14132   GGTGATCAGGCCGAC        GGCGATGGTCGG CAGG CCGGTCGCCGCC         TTGATGGCGCGGGCC  59 216
   Rru_A0150 NONE
   Rru_A0151  176459 ..  176477 +  -9.5  -2.82516   GGGCCGCTGGGCGGT             CCTGCGG CCGGC CCGCGGG             TATGATCGTCGGCGC  57 2
   Rru_A0152  176957 ..  176969 +  -5.5  -4.35742   AAAGGCTCCATCTCT                CCTTC CGT GGAGG                TTTTGATGATTGACT  71 87
   Rru_A0156  181608 ..  181619 +  -7.2  -3.05384   CACCCACCGCTAAGT                CGGG GCGC CCCG                 TTCCATGGCCGCCGC  52 28
   Rru_A0157  183261 ..  183292 + -14.5  -3.14132   CATCAAAGGGGTGGA      GCGGCGGTAAAGGG GGGCG CCCTT-GCCGCCGC      TTGATCGAGGGCGAC  82 88
   Rru_A0161 NONE
       groEL  189461 ..  189488 + -14.8  -4.33956   CTGGCTTGGACCAAG        GGGGCCGCTTCC GATC GGGGGTGGCCCC         TTTGTCTATTTTGCC 100 47
   Rru_A0163  189882 ..  189920 +  -5.9  -4.15044   CAGGGTTTCCCCCGC  GAC-GGTGGACATGCCGG CTTT TCGACGAGTCCGCCCGTC   TTTCTTGCGCAAAGG  68 47
   Rru_A0164  191852 ..  191905 +  -6.5  -4.10161   TTGTGGGTCCAGGGG CCTAGAACCCGCCTCCCGACGGCGCC GGT GGTGCT-TCGGGGAGTTGGCTCCGGG TTTTAGCCGGTCCTG  68 209
   Rru_A0187  226611 ..  226624 +  -5.2  -3.53091   TCGCCAAGGATCAGC               GCCG CTTTCC CGGC                TTTGACGAAGGGACT  52 45
   Rru_A0192  235666 ..  235692 +   -15  -3.86015   GGATGCCGAGGTCCT         GGGGGAGCGGGG GGA CCCCGGCCCCCC         TTTCTGCACACCGTC  93 438
   Rru_A0194  237795 ..  237810 +  -2.4  -4.56597   GGGGGCGCCCTGGTT              CGGGAC GTAT GCCCTG               TTTTTAAAACAGGCG  66 177
   Rru_A0195  243649 ..  243694 + -18.2  -3.55622   TGGGAACCTGACGGG GGAC-GGACCCCACCCGGGCG CGGGT CGCCCGGGTGGGGCCCAGGCG TTTGGGAACGTTCAG 100 30
   Rru_A0196  244671 ..  244683 +  -5.5  -4.56775   TGGTCGGAGAATTCG                GCTGA CCG TCGGC                TTTTTGACCCGCCCT  74 21
   Rru_A0197  246131 ..  246151 +  -2.6  -3.41936   GCACCTTCCAGCCGC           TCGG-GTGA CCCC TCATGCCGA            TGTTTCAGCTTGGTG  47 18
   Rru_A0198 NONE
   Rru_A0200  249811 ..  249834 +  -5.8  -4.62069   CCCGAACAACCTCAA          GGCGGTCCGC GAAA GCCGGGCGCC           TTTTTCGCATGCCCG  76 159
   Rru_A0205  255010 ..  255032 +  -2.6  -4.72272   CGCGTGACATTCTGC          CCGG-CCGC CCCTGT GCGGTCCGC           TTTTTCATCACCAAG  68 34
   Rru_A0206 NONE
   Rru_A0207  257987 ..  258002 +  -3.9  -2.81191   CCGCCGTTGGCGCAA              GGCCG ACCGGC TGGCC               CTTTGACCCTTTTTT  41 4
   Rru_A0208  261841 ..  261888 +  -2.7  -4.08216   GGTCCACGGCGCCCG GCGCCGCCCGGCGAT-AGG-CG AGAAGGG CGTCCAGATC-CTGGGCGGCGA TTTTCCCGGCCATCC  59 203
   Rru_A0214  267233 ..  267253 +  -2.6  -3.04144   ACGACAGCATGCCGA           TCA-CC-GGG ACG CCCAGGGTGA           TGTTGGACATGGCGA  41 241
   Rru_A0216  268677 ..  268691 +  -4.9  -4.66537   CCATCTGAAGCGCAG               CCCGT AGGGG GCGGG               TTTTGTGTTGCGGCG  73 19
   Rru_A0217  269965 ..  269980 +  -3.2  -3.69902   TGTGCTAGGGAAGGC              GCTTGT TTTG GCGAGC               TTTGCGGTCTTTGCT  51 140
   Rru_A0218  271215 ..  271225 +  -8.2  -3.95073   TCCCTTTGGGGACAC                 CGGC GCC GCCG                 TTTCTGGATGTAACG  69 206
   Rru_A0219  271521 ..  271576 + -10.8  -2.78679   CCCACGATCTAAGCC CAACCGGCGTCCCGCGCGCAGCGGTC CACG GACCGCTGCGTCCGGATCGCCAAAGG ATTTGCCTAAGGCGC  61 29
   Rru_A0223  276717 ..  276737 +  -8.1  -3.15758   GGCGGTGGCGCGCAG            GGCGGCGAC CAG GGCGCGGCC            TTCGTCAAGGCTTGT  54 139
   Rru_A0230  284967 ..  284980 +  -5.2  -3.28712   GGGCGAACAGATAGC               GGGC GTTCAG GCCC                TTGTAGCGCAGGCCA  51 436
   Rru_A0235  293162 ..  293193 +  -8.6  -5.60993   GGGACCTTGTGACAA      CCCGCC-ATGCCTGC CAA GCAGGAGGAGGCGGG      TTTTTTTATGCCCGC 100 236
   Rru_A0236 NONE
   Rru_A0237  294003 ..  294028 +    -9  -3.92542   GCTAAGGAAACCGGG         GCGCCGCCGTC CGCCT GACGGTGG-GC         TTGTTTGCCGCTGGC  73 36
   Rru_A0238 NONE
   Rru_A0239  294565 ..  294614 +  -7.7  -2.73542   ACGTCGTCATCTGAG GGAGGGGTGGTGTGGT-CTGCGAT GAC ATCCCGGGAACGCTCCGCCCCCCC TCCTTCGCGCTTGGC  53 27
   Rru_A0240  295186 ..  295219 + -12.3  -3.57144   TCTGGACGATCAAGC     TCTGAGAGCGGGGAC CGGA GTCCCCGCTCACCGC      TTTAAACATCCACCG  82 84
   Rru_A0253 NONE
   Rru_A0254  317000 ..  317057 +  -3.1  -4.04482   CGCTCTAACATTTAG ATTTAGATCAGGATTCAGATTTCAGGTC GATCA GACCTGAAATC--A-TCCTGATCTAGCG GTTTTTTTTGACCAA  59 93
   Rru_A0255 NONE
   Rru_A0256 NONE
   Rru_A0257 NONE
   Rru_A0258 NONE
   Rru_A0259 NONE
   Rru_A0260  322827 ..  322858 +   -23  -4.13767   GCCGCGACCAAAAGA      CCGCCGGGCCCGGA GACA TCCGCGCCCGGCGG       TTTTCGCATGCGGGC 100 60
   Rru_A0266  331888 ..  331903 +  -6.8  -2.52464   TGTCATAAGGACAAG              GCCCGCG TCC CG-GGGC              TGACTTGGGGCCGGG  48 33
   Rru_A0267  333674 ..  333691 +  -4.8  -2.55818   TGGCCGCGCTATCAG             GC-CGCC AAGCC GGCGCGC             TGAGTTCCCCTTCTT  43 5
   Rru_A0268  334292 ..  334345 + -21.7  -3.04461   CATTAAATCCGCCCG CCCCAGGGTGGAGCGGCGAAAAAGG CGTA CCTTCCCTGCCGCTTCGCCCTGGGG TGTTGAGCGTCGATC 100 35
   Rru_A0269  335561 ..  335575 +  -2.7  -2.62515   AATATGGGGGATAGG               CCCGG TACTT CGGGG               TCATCTCCGCCCCTT  38 117
        apaG  336135 ..  336177 +  -8.9  -3.05384   CCCTGCGGGGTAAGG CGGTCCCGAGGCGGCGGGC GCGTG GCGCGTCGGCATCGGACCG TTCCCTGACGCGGGC  60 120
        folE  336981 ..  337019 +  -6.1  -5.01535   TTCAGGCGGGGACGA  CCC-CGCCATGGAT-CC AGAGGGA GGCATCCATGGCTTGGG  TTTTTCTGGTTCTCG  85 89
   Rru_A0272  337335 ..  337354 + -12.8  -3.57462   GAGGCGATAAAAAAA            GGGGGCCT TCGC GGGCCCCC             TTTGCCGGTGGGATC  82 39
   Rru_A0276  341893 ..  341929 +    -3  -3.17723   TAAAGAGAAATAGCG   CCTCTTCG--AAACCGGG CCT TCCGGCTTGCCGACGAGG   TTGCATTCACCGTAC  43 28
   Rru_A0277  342721 ..  342733 +  -4.7  -4.74103   GGTGCCTGGCTCAAC                CCGCG ATC CACGG                TTTTTCGGTTCCGGC  78 175
   Rru_A0278  343373 ..  343409 +  -2.2  -5.41143   TTAATCCCATTCGGC   CCGCACCTGCGGGTCGTC CTC GATGGCCAG-ACG-GCGG   TTTTTTTCGCGCCTC  85 93
   Rru_A0283 NONE
   Rru_A0284  350101 ..  350128 +    -4  -3.58269   TCCCCATCCGCCCCC        GGC-CCGCGTCGG GGC TCGACCCGGAGAC        TTTGCCCATGGCTTC  51 67
   Rru_A0285 NONE
   Rru_A0286 NONE
   Rru_A0287  353821 ..  353841 +  -6.7  -3.53091   CCCGAGATTGGCTTT            GGCGTGCTC GGG GCGCACGGC            TTTGGGCAGGGCGAT  58 171
   Rru_A0290  357313 ..  357357 +  -6.2  -3.61398   TAGAGCGGCAAGTCG ACGGTGAATGGCGTCGGCCA CAGAC TGACCCCCGCCGTTCCCCGG TTGTTGACGGCGAAG  56 364
   Rru_A0296  363193 ..  363216 + -17.4  -5.63517   ACCAGTTCTTAAAAA          CCCGTCGCGG GATC CCGCGGCGGG           TTTTTTCTTTACCAA 100 337
   Rru_A0299  367127 ..  367155 +  -5.4  -5.42259   CATCGCCGACGCGCT       GCGCC-GTTTCATC GCA GA-GAAATAGGCGC       TTTTTTTACCCCTCC  91 1
   Rru_A0300 NONE
   Rru_A0301  368544 ..  368580 + -17.3  -4.91109   AATAGCGCGAAAGAC    CCTTGGGGAGAGCCGGC GGC GTCGGTTCTCCCCGATG    TTTTTGTGGTCGGCA 100 36
   Rru_A0302  369614 ..  369654 + -14.6  -2.78216   GGTCACTAAGACGGG GAGGCGCGCGGAAACC-CG GGAT CGAGGGGTCCGCGCGCCGC  TGGTTCATCGGGCTA  77 46
   Rru_A0303 NONE
   Rru_A0309 NONE
   Rru_A0310 NONE
   Rru_A0311  380313 ..  380327 +  -4.9  -3.28791   GGCTTCCCCCCGGCG               GTCCC AGTGC GGGGC               TTGTGGGCGCGGCGT  49 59
   Rru_A0312 NONE
   Rru_A0313 NONE
   Rru_A0314 NONE
   Rru_A0315 NONE
   Rru_A0316 NONE
   Rru_A0317 NONE
   Rru_A0318 NONE
   Rru_A0319 NONE
   Rru_A0320 NONE
   Rru_A0321 NONE
   Rru_A0322 NONE
   Rru_A0323 NONE
   Rru_A0324  394933 ..  394944 +  -2.2  -4.56702   GGCCCTTCCGGCGGG                CG-CC GAG GGTCG                TTTCTTTCCTTAAGG  66 109
   Rru_A0325  395973 ..  395987 +  -4.2   -3.5393   GAGTGTTACGGGAGG               CTGAGT GTG ACTCTG               TTTGAAAGGGGTGCT  52 22
   Rru_A0326 NONE
   Rru_A0327  400463 ..  400477 +  -3.4  -3.53444   GGCCCCTTCACGACC               GGGCCG CCT TGGCGC               TTTGAACCAGAGTGC  49 44
   Rru_A0328  401413 ..  401443 + -24.8  -4.56597   CGGCATAAAAGAGTA       CGGGGCGCGGTCCA ACA TGGATCGCGCCCCG       TTTTTGAAGACCACC 100 171
   Rru_A0329  402002 ..  402029 +  -6.2  -2.78712   GGTTTAGAGTCAATC        CCG-CGCCCTGTG GAC CAGAGGGCGACGA        TGATTGGCTTGACCA  46 34
   Rru_A0331  404061 ..  404082 +  -7.1  -3.33696   TGCTGCGTTTGCTTA           GGCGCGGCC GGCG GGCCGAGGC            TTGATTGGCGGCGCA  56 0
   Rru_A0332  404935 ..  404971 + -25.2  -3.53444   CTTTTGGCGGAAACG    ACCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGGC    TTTGACACGCGGTGC 100 115
   Rru_A0334  406947 ..  406962 +    -6  -3.73914   AAGCCGACGGGGGAG              GGGGGC TTGC GCCGCC               TTGTTGATCGGTGAT  60 54
   Rru_A0335  407836 ..  407875 +  -9.3  -4.21827   TTTGACAGGCAAAAG  CGGCGC-TAGGCCGCC CTTGCCTGT GGCGGCTTGTGTGCCG  TTTTCCCGTCTTTAA  79 255
   Rru_A0336  408811 ..  408825 +  -2.7  -5.89659   ATCAGAACAGCAAAA               GCGGG TCTGC CCCCC               TTTTTCTTTTTTTCT 100 62
   Rru_A0338  409692 ..  409711 +  -3.6  -2.71712   CCCGCTTGGAGATCA            CGGGAT-GA GCT TCGATCTCG            GTTTGAGCGGCGCCC  41 18
   Rru_A0339  410608 ..  410634 + -13.7  -3.53012   GATCAAGATCTGAGA         GCGATGAGCGG ATTCC CCGCTCACCGC         TTTAGGGGAAAACGG  86 146
   Rru_A0340  414018 ..  414031 +  -3.1  -4.59081   GTGTCGAGACGGTCT               TC-CGG TTG CCGCGA               TTTTCTGTCGCTTTC  70 111
   Rru_A0341 NONE
   Rru_A0342 NONE
   Rru_A0343 NONE
   Rru_A0344  417572 ..  417623 +    -2  -2.54732   GGCGAGCCGGGTGAA GGAGGCTCCCGATGCCTGAGCATC GCTG GCTGATCGTGCATCTGGAAGCGCC GTTGCTGGCTTTCGG  38 7
   Rru_A0345 NONE
   Rru_A0346 NONE
   Rru_A0347 NONE
   Rru_A0348  420402 ..  420431 +  -2.6  -2.62184   GGGTGCGGGTTCCCC       CGCACTCGTGGG GATAGA CCCGCGCGGGCA        TCATCTGCCCCGCAC  38 152
   Rru_A0351  425506 ..  425530 +  -9.1  -3.78934   GTCTTCGCGAAAGTT          GCGCAGCGGCG ATG CGCTGCCGCTC          TTCTTGTGAAGCACC  71 286
   Rru_A0365  440460 ..  440478 +  -5.8  -3.05384   AAGCGGGCGCCCAGG             GCCGCGCC CGA GTCCCGGC             TTGGGTCAGAACCGG  47 493
   Rru_A0369 NONE
   Rru_A0370  445097 ..  445138 +  -3.5  -3.10959   GCCCCCCTTGCGCGA GGGCCG-GCGATGATCCTGG GAC CCTTTACCATCGCGCTGCCC TATGTGTTGCCCTTG  43 13
   Rru_A0371  447892 ..  447909 +  -5.5  -3.57144   CCTGACCAATTAAGC             GCCCC CCCCACAA GGGGC              TTTCGCCGTGAAACC  57 28
   Rru_A0372  450035 ..  450061 + -16.8  -3.14878   CCCTGTCTTCTGCGA         TCATTGTCTCTG TTT CAGAGACAATGA         TATTCCATTCCGCGG  89 46
   Rru_A0373  450745 ..  450760 +  -4.6  -2.78816   CGTCGCCAAGAAGCT              CAAGGG CTGA CCCTGG               TCTGGTCCAGGCTCC  43 16
   Rru_A0374  451730 ..  451773 + -22.6  -3.18768   CCCTCACGGACGGGG TTAGAGCGGCAAGCGTGAAC CTTT GTTCCCGCATGCCGCTCTAA TATCTTGATATTGAA 100 22
   Rru_A0375  452627 ..  452664 + -17.1  -3.28712   GGCGGCTGACCGGCA   CGGTCTGCCCGGCGATCG TCA CGATC-TCGGCCAGACCG   TTGTCGGCGAAGGCG  86 109
   Rru_A0379  458332 ..  458378 + -15.8  -2.57132   GACCACCTGAAATAA CGCCGGCGCCCGAGGGAGGGA CCTTGA TCCGTCCCCCGGGCG-CGCCG ATTCTCGACCAGGCA  78 26
   Rru_A0380  458912 ..  458944 +  -7.6  -3.05384   CAGTTGCATGCCCTT     GGCGATCGCCAGGGC GGAG GCCCGGCCGA-CGTC      TTCGCTGCCCACGGC  53 173
   Rru_A0382  460631 ..  460641 +    -4  -3.06228   GAAAACGCCAAAGTT                 TGAT GGT ATCA                 CTTCTTTCTAATGGG  43 71
   Rru_A0383  461092 ..  461121 +    -8  -3.34075   CGGCGCTTAGCAAAA       TAGTAAAAAGGG GTCAGA CCCTATTTACTA        TCTGTTTCCTCTCTT  59 31
   Rru_A0384  462347 ..  462361 +  -5.6  -4.37092   AAGTAAAAAGTGAAA               AGGGGT CAG ACCCCG               TTTTGTCGGCGCGCT  71 136
   Rru_A0385  464283 ..  464317 + -15.7  -4.08216   ATTGAGCGTTCGATC    G-GCCCCCCGGCCCTT TGAG AGGGGCCGGCGGGCGC     TTTTCCGCGAAGTCA 100 36
   Rru_A0387  465526 ..  465537 +  -7.2  -3.61398   TAAAAAAGAGGAGAG                GGGC GCGA GCCC                 TTCTTGCGCGGAGAG  60 64
   Rru_A0388  466754 ..  466764 +  -5.4  -2.70932   GGCGATGACTTTAAG                 CATG GGG CATG                 TCCTTAAGGCGGGGC  46 255
   Rru_A0390  468004 ..  468024 +  -5.3  -4.15222   AGCGGGCTGGCAAAG            CCCCTCGGA TCA TTCGGGGGA            TTTCTTGAGGGGGAT  68 104
   Rru_A0398  476106 ..  476117 +  -7.2  -3.57144   GCGGGCGACAGCCTG                CCCC TATA GGGG                 TTTGCCGATGCGCAG  60 17
   Rru_A0400  478521 ..  478539 +  -2.4  -3.30124   GCGATCCTTGGCGAA             CTTGGC GAAATGG GCTAAG             TTGTCAGAAGTAAGG  44 109
   Rru_A0401  479230 ..  479244 +  -9.2  -3.44229   GAGACCGCCAAGACC               GTCGCC ACG GGCGGC               TTCTCCTGATCCCGT  66 2
   Rru_A0402  480082 ..  480093 +  -5.8  -4.11394   TGGTCTTGAGGATTT                CCTG GGAC CAGG                 TTTTGACCATCACCT  64 250
   Rru_A0415  492484 ..  492510 +  -9.3  -2.58544   GGTCCCGTTTATCAC         TGGGGGGCCGG ATCCG CCGGTCCCCGG         ATTCTAAAGATAAAG  56 40
   Rru_A0416  493430 ..  493441 +  -3.6  -4.07687   AAGGCGCTCCATAGG                GCGG GCGG CTGC                 TTTTACAGGGGCGAT  59 141
        acpP  493900 ..  493910 +  -3.2  -3.40522   GGACTTGTAGCAAGC                 CATG AGA CGTG                 TTGTCGTCACCGGGT  47 183
   Rru_A0418  495152 ..  495174 +   -12  -4.19746   TCGCTGATCTTCGGG           GGAGCCCC CTAACCA GGGGCTCC           TTCTTTTCAGGTAAG  89 14
   Rru_A0419  496186 ..  496196 +  -8.2  -3.07344   CGGGAGTGACCCCCC                 GGCC GCC GGCC                 TCTATTCGGCGGTGG  56 32
   Rru_A0428 NONE
         gmk NONE
   Rru_A0430  503540 ..  503569 +  -9.1  -3.86897   GTAATCCTTGGTGCC       GGGGCGGGCGGCC AGAC GGTCGACCACCTC        TTTCTGGAACATCAG  71 379
   Rru_A0436  511905 ..  511963 + -22.5  -3.02144   AACCGCTTCTTTTTT CGCGCGGTAAAAAAACCGCCCGCTTCC TTGAT GGAGGCGGGCGGTTTTTTATGCGCTCG TCTTAGGGCCAATCC 100 39
   Rru_A0439  517523 ..  517540 +  -3.3  -4.08064   AGCAGGCTGTCGGCC             GC-CGTCG CGT CGTCGTGC             TTTTCCAAGCCGATT  59 103
   Rru_A0441  520629 ..  520661 + -12.2  -2.62983   CCGGGTTCATCAGGT     TGCGCG-GATCGAAGG CGG CCTT-GATCGCGCGCA     TCATCTCAAGCTCGA  64 89
   Rru_A0449  528527 ..  528538 +  -3.6  -3.88498   TCTTTGATTTGTAAA                GGGG CACA CCTC                 TTTGATCTGTAAAGG  56 233
   Rru_A0450  529100 ..  529128 + -19.1  -3.83026   TCGAGATCAAAGTTT        CTGCGTTAAATGG ATC CCATTTAACGCAG        TTTGATCTAGGCGCG 100 42
   Rru_A0451  529513 ..  529556 + -31.4  -2.86432   GGCGGGCCGGCCAGA TTAGAGGGGTGAGCGTGAAC CATG GTTCACGCTCACCCCTCTAA TATCCTGATATTGAA 100 14
   Rru_A0452 NONE
   Rru_A0454  536036 ..  536046 +    -4  -3.53012   CCGATAAGACCGGGG                 TCAT CGC ATGA                 TTTCCCAACCCGCCG  49 56
   Rru_A0455  536616 ..  536627 +  -3.6   -4.1466   CGAGCGATTTCATGA                CGGC GAGC GTCG                 TTTTCAGCGTTGGAT  61 83
   Rru_A0458  538215 ..  538246 + -25.2  -3.17194   CATCCGTTTTCGTGT      CCGGGGCGCGGAGG ATCT CTTCCGCGCCCCGG       TTGCATTCCGGCCCT 100 52
   Rru_A0459  539943 ..  539973 + -11.2  -2.53903   AAAATCCAATAGGGG       TAAGGGTGCGAC CAAAGCA GTCGCACCCTCA       ATGGTTTTTCCCCAC  64 74
   Rru_A0461  541654 ..  541667 +  -3.7  -3.14132   TAGGAGAGGGAAACG               GCGGG TTAT CCCGG                TTGATCGGCAGGCGG  45 38
   Rru_A0462  543247 ..  543297 + -19.1  -3.28712   TCGACGCCGCCGCCT GACCGATCAGGCGCCGC-GCTAGCC AAG GGTT-GCGGCGCCGCCTGATCGGAC TTATCACGGCAAGAC  95 24
   Rru_A0463  544485 ..  544500 +  -2.4  -4.09685   CGGGCCCAGATCTCC              GGGGCG CCAT CCCCTC               TTTTCGAGCGTAACG  57 41
   Rru_A0464  545801 ..  545842 + -15.7  -2.78384   CGGCCATGGTGCGCA CCAGGGT-GCGCCCGCCCGG GGT CAGGGCGGTCGCCGCCCAGG TCTCCTCCAGGGCGC  75 478
   Rru_A0466  547389 ..  547416 +  -6.2  -3.57792   ACGGACTAGGCTGCC        CTCCCTTCCGTC CTTG GATGGAAGGCCG         TTTCCCGATCCCTGG  57 40
   Rru_A0467  549265 ..  549279 + -12.8  -2.79312   CGTCTAGATCCCGCG               CCCCCG CTC CGGGGG               TGTCGTCCAGCCTTT  69 34
        ilvH  549979 ..  549994 +    -6  -2.71712   GATCGGCGAAGACGA              AGCCGC GGAG GCGGCC               GTTTCAAGAAAGCCA  46 93
   Rru_A0469  551154 ..  551195 + -17.4  -4.07687   GCCCCCAGGGGCGTG CGACCCACCCCTCCGGAAG TGACC CTTCCGGGGGGGT-GGTCA TTTTGGGCACAAAGT 100 122
   Rru_A0470  552941 ..  552976 + -10.3  -3.06183   GTCCCCGGGTATGGG    TGCCGACAGCGGGGC TTGATC GCCCCGCCGTGGTCA     TTCCATGAGGCTCCG  64 99
   Rru_A0471  554048 ..  554064 +  -3.5  -3.72576   CCAGGCGCGACCAAC              ACAGGGG GAA CCCCGGG              TTTCATGGCACGGCG  54 197
   Rru_A0472 NONE
   Rru_A0473  556961 ..  556973 +  -2.6  -3.35996   GCGCTTGGCATTGTC                CGGT CCGGC GCCG                TTATAGGTGGCGATC  46 315
   Rru_A0477  560706 ..  560725 + -10.7  -5.09426   ACAGAATTCAAAAAA            CCCAGCC TTAACC GGCTGGG             TTTTTTGCGATTCGG 100 123
   Rru_A0485 NONE
        bchD  571930 ..  571940 +  -3.2   -2.9039   ACGACCCTTGGGGGA                 CATC TAG GGTG                 TGTGTGGCATGATGT  42 54
   Rru_A0487  573149 ..  573162 +  -3.7  -4.83615   CCCTGTGCGCGGGGC               GCGCC ATGG GGCGG                TTTTTCTCCGCAATG  74 293
   Rru_A0488  575244 ..  575260 +  -2.2  -3.29144   GCGTGACCGGCTATT             TC-GGCC TGCG GGCCCGG              TTCTAGGGGGCATCG  44 3
   Rru_A0489 NONE
   Rru_A0490 NONE
   Rru_A0491  578144 ..  578166 +  -4.1  -3.53012   GATCAGGCAGTCGGT          GCCGGTGCCGG TGA CCGG-GC-GGC          TTTGCCCGGCGCGGA  51 156
   Rru_A0493  580333 ..  580364 +  -2.8  -2.52742   CGGTCCTGGTCTAAT      TCGTTGCTGGCGGC GAGC GCCGACGACTATGA       GTATTGTCGCAAGCT  37 27
   Rru_A0494 NONE
   Rru_A0495  581715 ..  581755 +    -4  -4.17048   CAAGTAGAAAGCCTG GGTCGAACCGTGTTGAAGGG GGC CCCTTTAACCCGGA--GGCC TTATTTTAGAGCGGC  62 34
   Rru_A0496  582694 ..  582704 +  -8.2  -3.35679   GGGCGCCGACCTGAT                 CGGC CCG GCCG                 TTGTGCATGACCACC  60 496
        lysK  593602 ..  593623 +  -8.7   -4.7416   GTATCAGTGCAAAAA           GGCCGGA CGCCGAAA TCCGGCC            TTTTTCGCGTTTTCA 100 59
   Rru_A0504  595264 ..  595312 +  -6.3  -3.54424   CATCGCCTTGTGTGT CCCTGGCCGTCGCCGAGGTGCCC GAT GAGCGCGCCGTCGACGCCCCTGG TTTGGCCGGGTCAGC  55 167
   Rru_A0505 NONE
   Rru_A0506 NONE
   Rru_A0507  602060 ..  602107 +  -8.3  -3.13403   GTGGCGGTGCTGCTG GGCTAGAGCGGCTTGCCTGAA ATCTGC TTCAGGCCCGCCGCGCTAGGA TCTTGATAGCCAAGC  57 20
   Rru_A0509  604028 ..  604044 +  -6.5  -2.95068   CGCTCGCGCAACTCG              CGGACGA TGA TCGTCGG              TATATCCATCTCTTC  49 409
   Rru_A0513  608233 ..  608245 +  -6.9  -3.53012   CGGGGTGATCGAGCG                GGGCC GGC GGCTC                TTTCACGCCCCGGCC  58 215
   Rru_A0514  609410 ..  609439 +  -9.3  -3.76224   TCGTCAAGCAAATCG       TCGTCG-CGCTCTG CTC CAGAGCGTCGGGGA       TTTGCTCCATAAGGA  71 49
   Rru_A0515  610376 ..  610391 +    -6  -3.53811   CCAAAGACCTTCGGC              CCGACG GAGT CGACGG               TTTGGGAGAGATCCG  55 49
   Rru_A0516  610894 ..  610910 +  -9.3  -3.51232   TGCCAAGGGACCGCC              GCTGCGC GAT GCGCTGC              TTGCTTTAGGGCGAG  66 0
   Rru_A0520  614216 ..  614232 +  -4.4  -4.56597   GTGTCTTGACGGAAG             CGGTCTC GAGC GAG-CCG              TTTTTCCGAAAAACG  70 258
   Rru_A0521  617231 ..  617246 +    -6  -2.87132   CGCTTGGCGGGTGTC              GCGCCC GGAT GGGCCC               TCTCTGAAAAGGGCA  48 164
   Rru_A0522 NONE
   Rru_A0523 NONE
   Rru_A0524  619762 ..  619801 +  -9.4  -3.74158   TCCTTGGGCAGGGTG TCGTC-GGGGTCGCGGAGC ACATA GC-CC-CGACCCCAGACGG TTTCGATGTAATTGG  68 102
        fliI NONE
   Rru_A0527 NONE
   Rru_A0534  629987 ..  630012 +    -9  -3.64866   GGTTACGGGCCCTGA        GGCGGTGGGCGG CCCA CC-CCC-CCGCC         TTTACGGTGTCCTCT  68 54
   Rru_A0536 NONE
   Rru_A0537 NONE
   Rru_A0538  634024 ..  634056 +  -7.8  -4.53303   TGATAGGGGAGCGAA     TCCTCGTCGCGCTCTG GTT CAGAGGGCGA-G-GGA     TTTTCTCTGCGCCTA  79 137
   Rru_A0551  653232 ..  653244 +  -7.7  -3.14693   GGCCGCGCCCCCGAA                TCCTG GAA CAGGA                TATATTGGTGATCGG  57 316
   Rru_A0557  659404 ..  659434 +  -5.2  -2.91695   AGCGCCGGGGCGATG       CCCTGGGGATCGCG CAG CACCATCCCCTCGG       TGATTTCCAGCTCGA  46 380
   Rru_A0560 NONE
   Rru_A0561  664636 ..  664650 +  -2.7  -4.56607   TGCCCCCCGAAGGCG               GGCGC GGGCG GCGGC               TTTTGTGGTTCGTCG  66 53
   Rru_A0564  668174 ..  668219 + -14.5  -4.09511   GGTGTGACCGTCCAC CAGCGGCGAGCGGAGAGGGTC GGGG GGCCGGCTCCGCCCGCCGTCG TTTTGGAGAGGTCTT  95 34
   Rru_A0567  674302 ..  674326 +  -7.7  -3.56092   GAGCTGGCCTGCTGG          GTGCCCGACGC GGC GCGCTGGGTGC          TTTGGGCGATGGTCC  60 292
   Rru_A0572 NONE
   Rru_A0573  680674 ..  680699 +  -8.1  -3.53224   CACCGTCTACGCTTT         GCTGCCCTGAG GCGG CGCCGGGCGGC          TTTGCGCGGGAAATC  62 16
   Rru_A0574  682376 ..  682412 + -13.7  -4.12279   GGCCCACCTAACTAA   GG-GCACGGGCGCGAC GTCCCG GCCGCGCCCGTGCGTC    TTTCGTTTCCCTTTC  95 86
   Rru_A0575  683807 ..  683826 + -16.4  -2.78384   GGCTGAGCCCGGCCG            CCCCCGGC CGCT GCCGGGGG             TGTCATAAAACCGCC  79 35
   Rru_A0576  686183 ..  686219 +  -7.2  -4.08216   CGGCCCATGGCCAGG   GCCAGGGCATAGCGC GCCACATG GCGC-AGGCCCGGGC    TTTTGAGCAAGATCA  67 233
   Rru_A0578 NONE
   Rru_A0579  689335 ..  689348 +  -3.7  -2.62263   CGAAGGGCCTTGACC               GGCGG CCGC CCCCC                TGGTGTCCGCCCCCT  40 58
   Rru_A0580  689851 ..  689897 +   -13  -3.09004   CCAGGTCCATTTTTT GACGGGCACACCGTGGTCGGC CATCGT GCC-ACCACAGTGTGCCCGAA TGCTTTTGCCGGTGG  72 48
   Rru_A0581  691295 ..  691315 +  -2.3  -2.60079   ACCCCCTCCCTGCGC            GAGGCCGGC GGT GCGCGCCCC            TGAGTTCTGGCATAA  38 2
        lpxK NONE
   Rru_A0583  693609 ..  693634 +  -3.9  -2.95668   AGCGCGTAAAAAGGG         CGCTCAA-CCAC CCT GGGGCTTGCGCG         GTTTGTCGGTCGATT  42 32
   Rru_A0584 NONE
   Rru_A0585  696264 ..  696277 +  -2.3  -3.36515   ACTTGACAAAACGGC               CCCAG AGGC CTAGG                TATTTAGCACTCGCC  44 35
   Rru_A0586  696679 ..  696692 +  -3.7  -3.14132   TGACGAAGCCTGTCC               GCCCG ATCT CCGGC                TTAGTGAAGACCGGA  45 42
       groEL  698422 ..  698447 + -18.3   -4.3208   AAGCGCCAAAGGAAA         GGGCCGTCTCC GCAA GGAGGCGGCCC          TTTTCCATTGTGAGG 100 59
   Rru_A0593 NONE
   Rru_A0594  706088 ..  706138 +  -5.9  -3.66908   TCCTAGGGCGGCGGC GCCCCAGGGCGGCGGGGGCTG CGGTTTAAC CAGACCTTGACGGTCAGGGGC TTGCTTTTACGGGCG  57 35
   Rru_A0595  708302 ..  708312 +  -8.2    -3.737   TCGTTCGGCAGAGTG                 CCGG GAA CCGG                 TTTCATAGGGCCTTG  67 106
   Rru_A0596  709491 ..  709512 + -14.4  -4.72986   GCCGCCGCCAACACA           GCCCCGCC CGATCC GGCGGGGC            TTTTTCATGGGCATG 100 87
   Rru_A0597  710756 ..  710770 +  -9.2  -3.59315   CCGAGCTACCCTAGG               GGGTCC AAG GGGCCC               TTTCGCGCTCATTGG  68 382
   Rru_A0598  711846 ..  711884 +  -6.7  -4.08692   GCCGAGAGTTGATCA  G--GGTCCCGCGACCGG CCACCCT CCGGCCGCGGGATCGGC  TTTTCCGGGCCCTTG  68 49
   Rru_A0599  713427 ..  713439 +  -4.7  -3.65581   TAACGGCGATCACGG                CGACG AGA CGGCG                TTCTTCGGGATTAGT  54 38
   Rru_A0600 NONE
   Rru_A0601  715602 ..  715624 +  -7.7  -4.21812   CTGATCCCCCGCCGG          CCC-CTCCCT TGCC GGGGAGCGGG           TTGTTTTCGGTGGCC  75 37
   Rru_A0602 NONE
   Rru_A0603 NONE
   Rru_A0604  717288 ..  717325 +  -4.9  -3.10878   GCCTGAGCTTAAAAA   GGAATCGATAACTTCCA GTGA TCGAAGTTATCAGATCC    ATTTGTTGGACTGAT  46 35
   Rru_A0605 NONE
   Rru_A0606  719656 ..  719668 +  -9.1  -3.61715   GCGGACGGTGGCGCC                GGGCA GTT TGCCC                TTCTTGCGGACCATG  64 328
   Rru_A0608  721233 ..  721245 +  -3.3  -3.18053   GGACCCGGGTCAGGA                TCACC GGC GGGGA                GTTTGTTCATGTATA  45 152
   Rru_A0609 NONE
   Rru_A0610  722995 ..  723030 +  -2.4  -4.57341   AGCTGCCCGTCGCCA    TCCC-CTGTGCTGGCCG GTG CCGACGGCGAAGCGGGA    TTTTTGGGGCCGATT  66 96
   Rru_A0611  723716 ..  723734 + -13.1  -4.54727   GTCTGTTACCAAAAA             GGCGCCC GAACA GGGCGCC             TTTTGCTTTGGGGGC 100 76
   Rru_A0625  743507 ..  743525 +   -16  -2.90283   GTCTTTGCAGGTAGG             CCGCGGAG GGG CTCCGCGG             TGCTTGATTTGGATA  81 127
   Rru_A0626  745543 ..  745560 +  -4.9  -2.92094   CGCCTCATCCCTAAG             TGTCAAT TATA ATTGACG              ATCTTTTCTGTCAAA  45 62
   Rru_A0627 NONE
   Rru_A0628 NONE
   Rru_A0629  749094 ..  749106 +  -6.2  -2.78384   CAAGTCTTGAGGGGA                CCGC TTCGC GCGG                TGTGATGGGACGCGG  46 31
   Rru_A0630  749488 ..  749499 +  -7.2  -3.38324   GGAAGCCCCTTCTTG                GGCG GGGC CGCC                 GTTTTATTCCCCGTG  56 49
   Rru_A0632  753503 ..  753546 +   -11  -3.59979   GCCGCAGCGCCTGAT C-CCG-GCCCGGGTCAG-CGC GACTG GCGGCCGGCCCGGGCGCGGAG TTTGAGATAAGCCAG  77 27
   Rru_A0640  762780 ..  762803 +    -3   -3.1647   ACCGCACAGGCCCAA          CA-CCGCAGGG ACG CCCGGCTGATG          CTTTTCGCTCTTCCC  43 120
   Rru_A0641 NONE
   Rru_A0642  764699 ..  764715 +  -2.2  -3.54919   GCATGGCCCGCCTTC              CGGG ATTCTGACA CCCG              TTTCAAGGGATAATT  47 15
   Rru_A0643  765495 ..  765511 +  -6.5  -2.57132   TTCGGCCATTGCCCT              GGAACGC TGA GCTTTCC              CTTGTCACGCCCGCC  49 16
   Rru_A0644  766686 ..  766713 +  -8.4   -4.7373   AAGACTCCGGCCGTT        CGCGCCGG GCCTCCTGACAG CCGGCGCG         TTTTTCCTCCCGTCC  91 95
   Rru_A0645  767719 ..  767756 + -11.2  -6.28401   CTGTTCAACTAAGCC   GACCGGCGGCGCCCGCC CCGCT GGCGGGCGCTTCCT-TC   TTTTTTTGTTTTTTC 100 29
   Rru_A0646 NONE
   Rru_A0647  770164 ..  770179 + -10.4  -3.01712   TCCCGCTCAGCCTCC              CGAGGC GGCG GCCTCG               TCTTCCGGGCGCCAC  64 87
   Rru_A0651 NONE
   Rru_A0652 NONE
   Rru_A0653 NONE
   Rru_A0656  779743 ..  779774 +  -3.5  -3.28712   GCCAAGTCAGGGCGA      GGCAGGTCAGCAG CGTCGC CTTCAGGCCGGCC       TTCTCCGCCGCCGGG  47 296
   Rru_A0658  781201 ..  781219 +  -8.8  -3.65351   GAAAACAAATAGCCC             TGGGCGGT GAA ACAGCCCA             TTTCGGTGACGATCC  68 98
   Rru_A0668 NONE
   Rru_A0669  793069 ..  793097 + -14.7  -3.83026   TCTAGATCAAAGTTT        CTGCGTTAAAGGG ATC CCGTTTAACGCAG        TTTGATCTGAAGCGG  93 101
   Rru_A0670 NONE
   Rru_A0671  794800 ..  794857 + -20.5  -4.07568   GCCTGTAAGCGGCCG GGCCCGTCCCTCCGGGCTTGGTTCGGCC AGT GGTCG-GCCAAGCCCGGGGGCGGGAGCC TTTTACGAGACGGGA 100 33
   Rru_A0673 NONE
   Rru_A0674  797062 ..  797084 +  -5.7  -4.11484   GGAACCAGATTTGAG          TGA-TGCGAT ATGC ATCGCAATCA           TTTTAACCGATTCAA  65 23
   Rru_A0675  798905 ..  798925 +  -5.4  -4.36914   AAGGGGGCGGGACAG            TCGCTTGG CTTCA TCGAGCGA            TTTTGTCGCCAGCGA  71 86
   Rru_A0676  800383 ..  800393 +  -8.2   -3.5774   GAAGACCCCCGTTAA                 GGGG GTT CCCC                 TTTCAACGATTAACT  62 272
   Rru_A0680  803965 ..  804009 + -13.3  -2.98823   CCTTCGCCGTTCCTC TCCCCCCCCCCGGCCTTCGCC CTT GGCGAGGGGCGGGCTTGGGGC TATCTGTAGGGGAGG  76 159
   Rru_A0681  804785 ..  804810 +  -3.9   -3.6638   GGTGTCGGGCGCGGC         CCCGCC-GCATA TGG TAGGCTGGCTGG         CTTTTTCTATTCCTC  51 109
   Rru_A0682  806241 ..  806294 +  -7.4  -5.31275   GCCCGTTAAAGCCCT TGG-GCCCTTT-CCGTTGGGCGGCCGG TGA CCAGC-GCCAAGCGGGGGAGGGCGCCG TTTTTTCTGGTCAGG  95 44
   Rru_A0683 NONE
   Rru_A0684  809208 ..  809225 +  -8.4  -4.08394   CCAAGGTCCCTCTGC             GCGGCT AAATCC AGCCGC              TTTTAAGCGCCGTCT  71 162
   Rru_A0686  810986 ..  811007 +  -9.3  -2.98356   AGCCTTTGAGCCTGC           CGCTCCGGC CCGG GCCGGGGCA            TATCGTTCCTTGTGC  60 61
        nadE NONE
   Rru_A0688 NONE
        cysS NONE
   Rru_A0690  819249 ..  819261 +  -4.7  -2.78384   TCGCCGGAAGACGGA                CCGGG CCG CCCTG                TATCATCAAGGGGAA  43 101
   Rru_A0691  820433 ..  820445 +  -7.7  -3.05384   CGCCTTGGCCTGGAC                CACAG TCC CTGTG                TTCGATAGGCGGGAG  56 5
   Rru_A0692  821789 ..  821820 +  -9.4  -3.08679   TCCACACCGTGCCCT      GATCGGACACCACCG TGG CGCTGGCG-CCGATC      TGTTCGATCAGACGG  59 94
   Rru_A0695 NONE
   Rru_A0696 NONE
   Rru_A0697  827844 ..  827867 + -10.9  -3.01712   TCGCCCAGCAGGCGG          CGCGCCGGC TCGAGC GCCGGGGCG           TATTGCAAGAAGGAA  62 217
        rpsD  830761 ..  830786 + -18.3  -4.38774   ACATGGTTTATGCGA         CGGCTCCACCC TTTT GGGTGGGGCCG          TTTTGCTATGATCTT 100 62
   Rru_A0714  842184 ..  842203 +  -2.8  -3.38812   TATCGATCCGGCTTT            GATGGAGG CCCT CTTCGATC             TCTTCTTCGACCAGC  48 477
   Rru_A0718  847903 ..  847931 +  -5.2  -3.25823   GGCGCCGTCGCATTT       GGCCGC-TTGGCG TCGG CCCCAAGGCGTCC        TTAATATAGGAGACC  48 71
   Rru_A0719  848990 ..  849000 +  -8.2  -3.35679   GCAGGGCCTCGCACA                 GGGC CAA GCCC                 TTGTCCGTCAAACGC  60 269
   Rru_A0723 NONE
   Rru_A0724 NONE
   Rru_A0725 NONE
   Rru_A0726 NONE
   Rru_A0727  856817 ..  856830 +  -5.9  -3.11316   TTCCAGGGCGGCGGC               CCGCT GCAA GGCGG                TGTCTTGGCTCATCG  51 432
   Rru_A0731  859541 ..  859553 +  -4.1  -3.40403   GGGTCGCCTGATGGG                TGGTT GTG GACCA                TTATAATCGCCGCGG  49 264
   Rru_A0737  864110 ..  864130 +  -2.5  -4.07568   CTTTTGCCTGGAGAG            TATCGATGG TTG CCGTTGAGA            TTTTCACCACCCCGA  57 108
   Rru_A0738 NONE
   Rru_A0739 NONE
   Rru_A0740  866100 ..  866140 +  -3.2  -3.76402   GGACAGGGCGCCGTA TTTGGC-GGCATTGGTCGA TAGC TCGTGCAAAGCCAGCCCAA  TTTGCTGGGTGGCCT  56 331
   Rru_A0743 NONE
   Rru_A0744  870943 ..  870955 +  -6.2  -2.72344   TGACCCGCAGGGCCG                CCCG GCAAG CGGG                TGGTTGAGCGTACGA  46 6
   Rru_A0745  873296 ..  873306 +  -4.6  -4.68424   GGAAACGAGCGTTGT                 TCCC AGA GGGG                 TTTTTCGCTAGGTTC  73 66
   Rru_A0746  875000 ..  875010 +  -6.8  -3.48924   AGGTTGAAATCCGGG                 CGCT GAA AGCG                 TTATCTACGGGGTGC  58 20
        ispG  876276 ..  876330 + -11.3  -3.78329   CAAGGCCAAGGAACC GGCGACCGCCGCCGAAT-AG-GACCGG ACC CCGGCCGCTCATCCGGCCGGGGCCGCC TTTGCGTTCCTAGAC  80 7
        hisS NONE
   Rru_A0749 NONE
   Rru_A0750 NONE
   Rru_A0751  881440 ..  881476 +  -4.9  -3.66378   AAAGCGTGCGGTAGA    CGCGATCTCCATGGACC TCC GGTCCCCGGAGACACCG    TTTCCCTAAGGTGTG  54 416
   Rru_A0752  882612 ..  882647 + -21.2   -4.2528   AGCCAAAGGCCGTTT    TTCCGGGGCCGTATCC GCAA GGGTGCGGCCCCGGGA     TTTATTGGCTTCCCC 100 55
   Rru_A0753 NONE
   Rru_A0754  886534 ..  886544 +  -6.8  -3.92075   CCCCCATCGGCTCCG                 GGTC AAG GACC                 TTTATCCGTGCAAAT  65 71
   Rru_A0755 NONE
   Rru_A0756  889625 ..  889637 + -10.5  -3.61398   TCGGCCAAAGCGCGG                CGGCG ATT CGCCG                TTCTTCAGCACGACG  73 60
   Rru_A0757 NONE
   Rru_A0758  891572 ..  891612 +   -12  -3.67188   AAGGGAAAGGCAATT CCCTTTCAAGGGGAATTGC GCTA GCG-TTCTCCTTGTAAGGG  TGTTTTGGCGTGAAT  77 263
   Rru_A0759  892567 ..  892585 +  -2.3  -3.67296   CTTCGTGGCACCCGG             CGGACTG AAGGG CAGGCTG             TTTGCATCCCTGATC  49 18
   Rru_A0760  893906 ..  893916 +  -2.4   -2.8194   GCTCTATCCCAAGGA                 GCCC GAA GAGC                 TCTGATCGGTCCTTG  39 10
   Rru_A0761  895449 ..  895477 + -13.7  -3.21695   TGCCTTGGAACCCTG        GCGCCCATGGCCG GTC CGGCTTAGGGCGC        TTCCCTTCCTCGTCA  78 2
   Rru_A0762 NONE
   Rru_A0763 NONE
   Rru_A0764  898544 ..  898559 +  -3.2  -3.29511   TTAGATAGAGTATAC              CCTTTC GAGG GAATGG               TTCTCGCACGCTCAA  47 229
   Rru_A0765  902139 ..  902153 +  -9.2  -2.69964   CCGATCATAGATTAC               GGCGCT GAG GGCGCC               TGATGTCATTCGAAG  57 8
   Rru_A0771  922319 ..  922352 +  -7.4  -3.21276   GTCTGGCGAATGACC     TCGCCATCCTCGGTG AAGTG CACCGAGGC-GCCGA     TCTTGTCGGCAAGGC  54 484
   Rru_A0775 NONE
   Rru_A0776 NONE
   Rru_A0777 NONE
   Rru_A0778  931019 ..  931050 +    -5  -3.72695   GGTAAATATCTTTTT      TCGTCGGTCCCGGCC TAA GCCCGGTATCG-CGG      TTTCCTAACACGCGT  57 98
   Rru_A0779 NONE
   Rru_A0780 NONE
   Rru_A0781  934494 ..  934506 +  -3.3  -3.28924   AGAATGGCCCAAGTG                CCAGA AGA TCGGG                TTCTACCGCAGGATC  47 108
   Rru_A0782 NONE
   Rru_A0783  935503 ..  935513 +  -6.8   -3.1634   TCGGGAGTCGCGTCG                 TCCG CCG CGGA                 TTGGCTGGTTTAGAG  54 76
   Rru_A0784  937144 ..  937181 + -10.6  -5.40474   CCGCCTCCGTAAACT   CACTGCCCGATCCGGAC CCCAT GTC-GGATCGGGCAGCC   TTTTTTTGGGGCGAT 100 190
   Rru_A0785  938376 ..  938404 + -18.9  -4.70583   TTGCCCTAACGAAAA        GCCCCCCGGGA GGATCGG TCCCGGGGGGC        TTTTGTCTTGGTCGG 100 152
   Rru_A0788 NONE
   Rru_A0789 NONE
   Rru_A0790  944195 ..  944228 +  -7.3  -3.91897   CGACGACCGCCGTAC     CGGGGTGTGGACGGCC TGA GCCCGGCCAT-TCCCG     TTTCTCCCTAAAAAA  65 7
   Rru_A0791  945073 ..  945100 + -19.9  -4.05788   CGGCCAAAAGGAAAA        GGGCCCGGACG GGGTGG CGTCCGGGCCC         TTTGATTTACCGGGA 100 49
   Rru_A0799 NONE
   Rru_A0800  956427 ..  956443 +  -6.5  -2.93073   GCCGATCCGAGGGTG              CGATGAC CCT GTCAGCG              TGGTTGTTCACCGAG  51 20
   Rru_A0801 NONE
   Rru_A0802 NONE
   Rru_A0803  959145 ..  959171 +  -4.5  -5.42514   TAACTAGATATTAAG         CCGTTGATT CCAGATCAA AATCAGCGG         TTTTTTGCTTTGTGG  90 256
   Rru_A0809 NONE
   Rru_A0810  966942 ..  966956 + -12.8  -3.61178   TGTTTAACGGAACGG               CCGGGC TGA GCCCGG               TTTGGGCTGGCTAAA  82 34
   Rru_A0817  974362 ..  974415 +  -2.2  -3.64703   TGTGGGCGTTCGACC GCCCG-CG-CCCCGGCCCTTCGGC CAAGCTCC GCTGGTGCGCCAGGAACGACGGGC TTTGCATGAAGAACA  49 427
   Rru_A0819  977212 ..  977232 +  -8.3  -3.08679   CAAAGGCGGCCAGCA            TCGGCATAT GCC ATTTGCCGA            TCTTGCCTCCCACGG  56 340
   Rru_A0823  980128 ..  980185 +  -4.5  -3.24823   GGGAAGGCGAAGAGG GATCACCTCGGCCCAGGCGCGCCGCCA ACTC TGGCCGAGCGTCGGGACATAGGGCATC TCCTTTTTACCCATT  48 475
   Rru_A0825 NONE
   Rru_A0826 NONE
   Rru_A0827  981315 ..  981327 +  -3.3  -3.88115   GAAGGTATCGCGAAA                AGCTG CTC CAGCG                ATTTTTTCTATTGAT  56 158
   Rru_A0828  983664 ..  983681 +  -4.9  -3.21772   AAGACGCCGGGTATC             TGGATCTG GAG CAG-TCCA             TCTTCTAAAAGGATT  48 0
   Rru_A0829  984341 ..  984369 +  -9.6  -2.71364   TGCGGGTGCCGGCTC       CG-TCATCGGCGG AGAT CCGCCGATGAGCC        TCCTTGCCGCGCTGA  57 0
   Rru_A0830 NONE
   Rru_A0831 NONE
   Rru_A0832 NONE
   Rru_A0833 NONE
   Rru_A0834  989591 ..  989622 +  -2.8  -3.18681   GTGTCGCCCCCTTCA      CGGGGGCGTGGATCG AAA CGGG-CACGACGCCG      TTGATCGCCTTGGCC  44 439
   Rru_A0839  999685 ..  999702 +  -3.3  -3.90048   AGCGGTGGTTTGCAT             TCACCGT ATTG ACGGCGG              TATTTTTGCGACCGC  56 179
   Rru_A0840 1001160 .. 1001204 +  -2.2  -2.77895   GCCGCACATTCAGCG TTGCAATAACGCAAACGATA ATTAA TATCATTTCCGGCATTGCGA ATTGTTCAGGCTCCG  39 85
   Rru_A0841 1002249 .. 1002295 + -15.2  -2.63858   ATACGCTGACCTCGG TC-CGCGCCGC-CGGT-CGCGGG GCCG CCCGCGCACAGCGCGGCGCGCGG ATTATCGCTGTCGTC  76 32
   Rru_A0842 NONE
   Rru_A0843 1004420 .. 1004434 +  -2.7  -3.03159   CGCGCCGAGGGAGAG               GCGGC ATGAA GACGC               TCTTGGACCGCTTCC  41 17
   Rru_A0844 1006296 .. 1006306 +  -4.6  -3.72027   TCGATGTGACGAGTG                 CCTG TCT CGGG                 TTGTTGGTGGCGGGT  57 187
   Rru_A0845 NONE
   Rru_A0846 NONE
   Rru_A0847 NONE
   Rru_A0848 1011761 .. 1011775 + -11.4  -2.94416   GACCAAGCCTGCGAC               GTCGCC ATC GGCGAC               TATGTGCTCGACGTC  66 308
   Rru_A0849 1012120 .. 1012138 +  -6.7  -3.28791   CGCTCATCGGCGTCG            CGTCGTGC CGTG GC-CGACG             TTATGCCAAGAGGCT  56 60
   Rru_A0853 1017080 .. 1017110 +  -8.2  -3.01712   AGCCAGAGGATGCGG       GGGTGGGCGCCG CGTTATC CGGCGTTCAACC       TGTTGGCGGGCCGAC  56 123
   Rru_A0854 1018214 .. 1018262 + -10.2  -3.09175   CTGATAGCTTTCGCG CAGGCTCGACAGCGTATCAAACC ATTC GGGATGTTGCGC-GCCGAGCCTG TCTTCCATAAGGATT  62 258
   Rru_A0856 1021186 .. 1021209 +  -5.9  -2.66316   AACGCGACAGGGTGG          CGGGCCGCT CCACAA AGCCGCCTG           TCGTCTCCTGGGCCA  46 219
   Rru_A0862 1028411 .. 1028423 +  -4.7  -4.15044   CCGATAAGCCGGGCG                ACCGC TTA GCGGC                TTTGTTCCCGCCACA  65 42
   Rru_A0865 NONE
   Rru_A0866 1035717 .. 1035749 +  -3.9  -3.29211   GCTATTGAAGCAAAT      CGCCGTCGCGGTCTG GTC CGGAACGCCAGGGCA      TTCCCTTTAGGGTTG  47 33
   Rru_A0878 1049683 .. 1049700 +  -5.5  -3.91084   CATCCCTGATAAAGC             GCTTCTG GCGT CGGGAGC              TTTAATTGCAAATGA  62 32
   Rru_A0879 1050976 .. 1050989 +  -3.8  -3.48924   GCGCAAGGCACGAGT               TCCC TCCGTT GGGA                TTGTCTCCCCCATGA  49 155
   Rru_A0880 1053025 .. 1053037 +  -6.2  -3.40403   CACCGTGGGCATGCG                GGCC AGTTG GGCC                TTCTGATCGCGCGCC  52 7
   Rru_A0881 NONE
   Rru_A0882 1056653 .. 1056670 +  -5.5  -4.07568   AGGGGGGGCTCCCTT             CATCGGC CCGC GACGATG              TTTTCCCCAAGGCCG  65 46
   Rru_A0883 NONE
   Rru_A0884 1058314 .. 1058327 +  -8.1   -2.7535   CCAGGGTGCGAGTAA               CACGC ATTA GCGTG                TGATGTGTTGGAAAG  53 92
   Rru_A0885 1061058 .. 1061088 +  -7.4  -3.57144   AGCCGCGCCGCCTCG       ATGGCCGCCGGGAC GGT GTCCTGGCCGTCGA       TTTCAAGCTCGCGGG  60 332
   Rru_A0889 1066623 .. 1066640 + -12.7   -4.1899   GGCTGCCATGAAAAA             GGCCACC CGAA GGTGGCC              TTTTCCGTGCGATCA  95 61
   Rru_A0896 NONE
   Rru_A0897 1073102 .. 1073118 +  -9.4  -3.53012   TGAGGCGCTCGTGTT              GGCGCT AAAAG AGCGCC              TTTACGAAGCCACGA  66 38
   Rru_A0902 1078162 .. 1078179 +  -3.4  -3.59979   CTTCTGGGCGTGAGG             GTTCTG GTCTGA CAGGAC              TTTCCGGTACAGGCC  51 14
   Rru_A0903 1080782 .. 1080839 +  -3.7  -2.60032   GAGCAGACCCTCTAG CGGCAAACCGGGTTTCGTCCCCCCGGA CCAG TCCGGGGGGACGGCCTCCAAGAAGCGG GGTTTTTCGCCAGAC  40 26
   Rru_A0904 NONE
   Rru_A0905 NONE
   Rru_A0906 NONE
   Rru_A0907 NONE
   Rru_A0908 1084285 .. 1084318 + -13.8  -4.47271   GCTAAGGCGTTTGAA     TCGGGCGGCCCGAC AAACCG GGCGGGCCGTCTGA      TTTTCCTTGGGTTTC 100 36
   Rru_A0909 NONE
   Rru_A0910 1085965 .. 1085981 +  -2.2  -3.28712   CCATGTACGGCGCCA              CGCC GGGGGAGGG GGCG              TTATGACCGACCAGG  44 3
   Rru_A0911 NONE
   Rru_A0912 NONE
   Rru_A0913 NONE
   Rru_A0914 1089329 .. 1089354 +  -2.4  -2.62263   ATGAACCGGGGCCCC         CGCCC-CGGTC CCCCC GCCCGAGGGAG         TCATCTCCCCCCGGT  38 124
   Rru_A0915 NONE
   Rru_A0916 NONE
   Rru_A0917 NONE
   Rru_A0918 NONE
   Rru_A0919 1094330 .. 1094357 +   -20  -5.07652   ACCGGGTTGAAATCA        CCGCGTTAAGGG ACTC CCCTTAACGCGG         TTTTATTTTGCGGCA 100 58
   Rru_A0920 1095941 .. 1095967 + -20.8  -4.72272   CTCCCCTCACGAAAA         GGGCGACCCGCC GAT GGCGGGCCGCCC         TTTTTCATGGCACCG 100 83
   Rru_A0924 NONE
   Rru_A0925 1102083 .. 1102113 +   -22  -3.14051   AGAGGGACGCCAATC       GTCCTGGCGATCTG GTG CGGATCGCCAGGAC       TCTTGATCCAAGTCG 100 87
   Rru_A0926 1103632 .. 1103645 +  -5.2  -4.07568   AGCAGGCCAGCATAA               GGCC GACCTG GGCC                TTTTCCGCCGGCGAC  64 210
   Rru_A0929 1105883 .. 1105920 + -19.9  -5.77853   TCGCCTTATCGACCC   CGCCGCCCGATCCGA GCCCGCTA TCGGAGCGGGCGGCG    TTTTTTTTAAGCCTT 100 81
   Rru_A0932 1111011 .. 1111049 + -18.8  -3.53012   AAATAGCCCGCCGCT   CCGCCGGACCGGGGTG CGCCATC CCCCCCCGTCCGGCGG   TTTGCCGCGCGCGGG 100 35
   Rru_A0933 NONE
   Rru_A0934 1114132 .. 1114163 +  -5.8  -2.67143   GTCACCCTGATCGAC      AGCATGAATCCCCTC TAT GGGGGGAA-CATGCA      TAATATCGTCGATAT  46 132
   Rru_A0935 NONE
   Rru_A0936 1116349 .. 1116371 +    -9  -3.90744   TCGCCCGCACCGGCA           TGCCGCCGGC GGC GCGGGCGACA           TTCTTTAAGAAGCCA  73 250
   Rru_A0942 1124576 .. 1124595 +  -5.6  -4.07568   CGTTGAGGATCAGAT            CGTCGTCG ACGA CCACGGCG             TTTTCCAGCGAGCCG  64 414
   Rru_A0965 1149684 .. 1149700 +    -5  -3.57144   GAGGCCGGCCGCGCC              GCCGCC CAATA GGCGCC              TTTGGCGATCGAGCC  54 14
   Rru_A0966 NONE
   Rru_A0967 NONE
   Rru_A0968 NONE
   Rru_A0969 1155232 .. 1155255 + -10.2  -3.40403   AACGACTGAACAAGG          C-GCGCGCCGC CAA GCGGCCCGCCG          TTCTGGTGACGGCGC  68 41
   Rru_A0970 NONE
   Rru_A0971 1158001 .. 1158024 +  -3.8  -3.53012   GGCGGGCAGGATGCG          TTCGAGCACGG CCA TCG-GCTCGAC          TTTAAGCGAGCAGAC  51 478
   Rru_A0973 1159193 .. 1159222 +  -3.3  -2.67456   TTTGTGATGTCTGGC       GCGGAGATGACCG CCGC CGGACTCCTCCCC        CTTATAATGATGTGT  40 57
   Rru_A0974 1160247 .. 1160300 + -28.4  -3.28712   GACGCCAGTGCTTCC GGCTTCCAATGCAAAACCCCCGCC CTCCGT GGCGGGGGTTTTGCGTTGGAGGGC TTGTGACGGCCGGGG 100 181
   Rru_A0975 1160742 .. 1160754 +  -9.1  -5.37345   AGGGGTCCGAAAAAA                GGGGT TAG ACCCC                TTTTTTATGCTTCCG 100 154
   Rru_A0978 1164173 .. 1164184 +  -3.6  -4.10657   CATGACAACGCCCCT                GTCG CCGA CGGC                 TTTTCCCCCGTCTCC  59 36
   Rru_A0979 1165864 .. 1165887 +    -3  -3.01712   TGACGCCTCCCCGTC          GGTCC-CTCTC CCG GTGCGCGGACC          TGTTCCCCCAAGGCC  41 38
   Rru_A0980 NONE
   Rru_A0981 NONE
   Rru_A0982 NONE
   Rru_A0983 NONE
   Rru_A0984 1172274 .. 1172287 +  -2.3  -3.79419   AGCCTATAAGATCAA               ACGAC AAGG GTCGG                TGTTTTATAGGGCGC  52 139
   Rru_A0985 1173872 .. 1173884 +  -4.7  -2.87051   CCCGCGCCCGAGCGT                GGCCC CCA GGACC                CTTTCATGATACCGG  45 54
   Rru_A0986 NONE
   Rru_A0987 1175136 .. 1175150 +  -3.4  -3.21726   CAGCTAACGGCAAAA               AGTGGC CTT GCCGCC               TTACATCTTGTCGAC  45 34
   Rru_A0991 1180101 .. 1180124 + -12.4  -2.61681   GCGGCGAATTACTAA          CCCGGTCCTC TGAG GAGGGTCGGG           CTTGTGCCGTTCCGG  68 121
   Rru_A0992 1180580 .. 1180600 + -11.1  -3.71686   GGGACGGGGGCGGGG            GCCGCCC GGGCTTG GGGCGGC            TTCTCTTGACTTCGG  80 40
   Rru_A0993 NONE
   Rru_A0994 NONE
   Rru_A0995 1184648 .. 1184694 + -12.9  -4.15044   GCTGACCGGACGCGG GACCCGGGATCGGCCAG-CGCT TGGG GGAGACTGGCCGGTCCCGGTGC TTTCTTGACGACGGG  95 36
   Rru_A0996 NONE
   Rru_A0997 NONE
   Rru_A0998 1186054 .. 1186112 +  -5.7  -3.14564   GGCGCGAAAGATCTC GGGCGGTGAGGACTAGGCGGTGA-CGGC CTCC GCCGATCCCCGCAGCCTGCTCGCCCCCC TTGGTCAGGCGATCG  50 10
   Rru_A0999 NONE
   Rru_A1000 1187746 .. 1187765 +  -9.2  -3.04248   GACCGCCCGACAGTT            GGCCCGGG TATT TCTGGGCC             TGTTCGGGGATCTTG  57 517
   Rru_A1005 1193046 .. 1193060 + -12.8  -5.14563   GCCGTATTGGAAAAG               GGGGGG CTT CCCCCC               TTTTTTCATGGGGGC 100 64
   Rru_A1006 1194432 .. 1194446 +  -7.1  -3.70902   ACCGGTGGTTGGTCG               CCTGC GAGGG GCAGG               TTTCGATGTCGCCGG  61 127
        nifH 1197953 .. 1197969 +  -2.1  -3.01712   GCGACGGAAGCGGGC              GGACCTC CAA GAAGGCC              TCTTCGCCGAGGCGA  41 92
   Rru_A1011 NONE
   Rru_A1012 1201110 .. 1201147 + -14.7  -5.60993   TGGTCGCGTCCCTCC   TTCCGCCGTCCCCGGGG TCCA TCCCGTGGACGGCGGTC    TTTTTTTGTCGAAGG 100 95
   Rru_A1013 NONE
   Rru_A1014 1203525 .. 1203544 + -10.6  -2.81291   AAATCGTCGTCGCCC            CCCGGTCC AGGG GGCCCGGG             ATTTGCCCTTATCCC  61 69
   Rru_A1019 1209328 .. 1209352 + -24.3  -3.53012   CGATCCAAACGAAAA          CCGCCGCCCGG GGT CCGGGCGGCGG          TTTCGCGGCACAGGG 100 93
   Rru_A1021 1211434 .. 1211459 + -16.9  -5.48825   TCGCCTTAAGAAAAA         GGGTGGGGAGC AAAC GCTTCCCACCC          TTTTTTTGACTGATC 100 85
   Rru_A1024 1213793 .. 1213811 +  -5.9  -3.35679   TCTGGCTATTTTCGC             TGGCGGG CATTC TCCGCCG             TTCTCAATCAAGGAC  52 158
   Rru_A1025 1214527 .. 1214542 +  -4.6  -3.15861   GGGCAGTCAATGCCA              CTCGTG GCGG CACGCG               TTGATGGGGGTCGTG  48 96
   Rru_A1027 1217565 .. 1217587 +    -4    -3.922   CGGCGTTGACAGCGG           GCCGGGCC CGGGTAA GGATCGGC           TTTCATTAGACCTTT  56 32
   Rru_A1028 1217880 .. 1217906 +  -5.6  -3.06696   TTTATCCCACCAGCG         GGCGCTAAGCCG CTT CGGCGCGGCGCA         TCTGTTGGGCGGAGA  49 18
   Rru_A1034 1226087 .. 1226110 +  -8.2  -3.05844   CGAAGGCCTCGCCTA          GG-CTGACTCT CAA AGAGTCGGGCC          TGTTCCACTGGCGGG  56 145
   Rru_A1041 1235468 .. 1235495 +  -5.5  -4.30576   GGGTGCTTGCGGCAA        GGGCG-GCGCCT CGTTA AGGTGCGCGACC        TTTTCATCATCCCCC  71 162
   Rru_A1042 1235824 .. 1235847 + -17.4  -3.53012   TCTGAGCGCGCATCA          CGGGCCGGCC CCTC GGCCGGTCCG           TTTCCACCAAACGCC 100 36
   Rru_A1044 1237219 .. 1237253 +  -4.9   -4.3467   CGAGCCCCCTTTAAC    GC-CGGGACCAGGGTCG ATT TGGTCCCGG-CCCGCGC    TTTTGGTCTGGAGAT  68 76
   Rru_A1045 1237969 .. 1238002 +   -16  -3.53444   TTGGCCTTGGACGAT     CC-CGGGGGAGGCCG CTTCA CAGCCTCCCCCGAGG     TTTAAGGACGGATCA  93 46
   Rru_A1048 1242380 .. 1242393 +  -2.3  -3.63744   CAGGCCCTTGTCGGT               TACGC CAAG GCGGA                TCTTTTCAGCCCGGG  51 144
   Rru_A1050 NONE
   Rru_A1051 NONE
   Rru_A1052 1245910 .. 1245935 +  -7.5  -3.65351   GACGCCGGTGATGTT         GCG-GGCGACCT CGC GGGTGGCCTCGC         TTTGGATGGCGATCG  63 187
   Rru_A1054 1248922 .. 1248945 + -10.2  -4.87665   TTCGCCCATCAAAAA          AGGGGGAGCC TCGC GGTTCCCCCC           TTTTTATCGGTCGGC 100 62
   Rru_A1057 NONE
   Rru_A1058 1252593 .. 1252633 + -10.2  -2.52623   ACAGGGCGTCGAGGA  TGGCGCGGTCGTCGGCCG AAAGG CGCAGGGCGGCCGCGCCG  ATATTCTCGCGCAGG  56 109
   Rru_A1060 1254559 .. 1254571 +  -4.7  -5.26119   TGCATCGGGTACCAA                CGCCG AGG CGGCC                TTTTCTTTTTCAGCG  89 47
   Rru_A1061 1254830 .. 1254853 +  -3.8  -4.18494   GCCTATCAGGAGAAG          GCGCGC AGCGAATGGTAG GCGCGC           TTTTCGATACCAATA  62 8
   Rru_A1062 1255187 .. 1255199 +  -3.3  -2.58544   ACGATCCGGGGGTAC                GCGAA CCC TACGC                CTTGTAGCAATCACC  40 6
   Rru_A1063 1255628 .. 1255638 +  -2.4  -4.58395   CGATGGCGCGGAAGG                 GCGG GAA CCGG                 TTTTTAGCCCGTCCC  68 65
   Rru_A1064 NONE
   Rru_A1065 1256367 .. 1256381 +  -2.7  -4.72272   CAAACCCTTGGCGCT               GCGGG CTTAA CCGGC               TTTTTCATCGAACCG  68 16
   Rru_A1066 NONE
   Rru_A1067 NONE
   Rru_A1068 NONE
   Rru_A1069 1260289 .. 1260301 +  -6.2  -3.47227   GAACTGGCCAACTTC                GGGC TCGGC GCCC                TTATCCTGCTTGCCG  55 348
   Rru_A1078 1270433 .. 1270481 +    -8  -2.62263   CCCGGTCAGCTGTTT TTGGCGGCGAAGCGGCGGCGGGCG GCG CGCCAGTCGCGGA--CGCTGCCGA TGATGTCGCGGGCGT  52 43
   Rru_A1082 1274219 .. 1274234 +  -6.1  -3.53012   GCCGATCCGCCCGCT              CGGTC TTTCCC GACCG               TTTGAAGCCCGACCG  55 48
   Rru_A1083 1274793 .. 1274842 +  -8.7  -3.36878   CGGTATGGCCCCGCA CCTTTCCCCGTTCCCATCCCGGCCG ATCC TGGCCGGG--GGG--CGGGGAAAAG TTGTAAGTGCGTCCC  63 193
   Rru_A1084 NONE
   Rru_A1085 1276535 .. 1276557 + -10.6   -4.2558   CCCAGCCCCGGCAGG           GGAACCCC TTGTGGC GGGGTTCC           TTTTCCTGGGAAGTC  84 119
   Rru_A1086 NONE
        ruvC NONE
   Rru_A1088 NONE
        ruvB NONE
   Rru_A1090 NONE
   Rru_A1091 NONE
   Rru_A1092 NONE
   Rru_A1093 1282839 .. 1282858 + -16.4   -3.5764   CTCGGGTGTTTCCAG            GCGGCCCC GCCC GGGGCCGC             TTTGCCGGTGCGGTT  93 238
        tolB 1284288 .. 1284318 +  -3.3  -2.80245   TGACCCAGCATGGTC       GCCCCTTCT GCCATGACGTAAA GGAAGGGGC       CTTGTCTTCCCGTGC  41 10
   Rru_A1095 1285046 .. 1285100 + -13.1  -3.65693   AAAGGCATCAAGGGA GGCGTCGTCTTCCG-CTGTCACCGTC AAAAGG GGC-GTGATGGCCGGAAG-CGACGCC TTTCGCCTGTCTGGT  82 130
   Rru_A1096 NONE
   Rru_A1097 1287583 .. 1287594 +  -7.2  -3.29144   GGCCTGCGGGTCGGT                GCCG GCGG CGGC                 TTGTAAGAGGGGTCC  56 8
   Rru_A1098 NONE
   Rru_A1099 1290889 .. 1290901 +  -9.1  -3.07236   CAAATTTAACGCACG                CCGCT CTC AGCGG                TATTAGGCTCCCTTT  60 57
        glmM 1292548 .. 1292593 +    -4  -4.07568   CTGGCCCAGACGCTC CATAAAGCGCTGATGCAGGTCG CTGT CGGCCGGCACC-GC-CTTGATG TTTTCGCGCAGCCGC  61 205
   Rru_A1102 NONE
   Rru_A1103 1296470 .. 1296500 +   -11  -5.22006   GGGGGGGCGTTGACG       GCGGCCCGCCCG GTTTCTA CAGTCGGGCCGC       TTTTTCTTGTCGTGA 100 113
   Rru_A1104 1297742 .. 1297755 +  -5.9     -3.67   GAGGTCGCCCGCGAT               CTGGC CTGA GCCGG                TCTTTTCCCCCTTCG  57 17
   Rru_A1105 1299057 .. 1299099 +  -5.5  -4.85599   GGGCAGGGGCCGATC GTCGTGGGTGATCCACGGCC GGCC GCCCG-GGATTTCCCATGAA TTTTTCTCGAATACG  81 59
   Rru_A1106 1300498 .. 1300514 +  -9.4  -3.28712   TAGTCTGGGTCGGGA              GCGGGA ACCCG TCCCGC              TTCTGAGCAGGGAGA  63 108
   Rru_A1107 NONE
   Rru_A1108 1303411 .. 1303444 +   -11  -2.82516   TATCAATACATTAGA     GCGGTGTGCGCGGA CGAGAT TTCACGCATACCGC      TCTCATCGTGCGCCA  65 281
   Rru_A1112 NONE
   Rru_A1113 1308767 .. 1308785 +  -4.5  -3.53012   GGCGCCGTAGCGGCT            CGG-GTCG GGTT CGGCTCCG             TTTGACGGGCCAGAC  52 164
   Rru_A1115 1311149 .. 1311160 +  -2.2  -2.74144   CCAATAACCCCCTCA                GC-CC GCC GGCGC                ATTTACACCTAGCCC  39 41
   Rru_A1116 1311909 .. 1311925 +  -5.7  -3.72576   GCAGGCTGCGGATCA              GCCCGCG CCC CGTTGGC              TTTGCTGCAAGCGGC  60 102
   Rru_A1117 NONE
   Rru_A1118 1316296 .. 1316320 + -18.7  -3.17571   GCCTGAGCTGAAGAA          TGTCCCGCCTT CCC AAGGCGGGACA          TTCCATTCACCCATT  90 35
   Rru_A1120 1319974 .. 1319990 +  -3.6  -4.14739   CAGCATTCTTGCCGC              GCCGCA ACACA TGCGGG              TTTTCCCGTCGATCC  62 107
   Rru_A1121 1323503 .. 1323518 + -11.8  -4.56597   CTGAGCCTGGGGCAA              GGGGGC TTCG GCCCCC               TTTTTCCCCCAAGGA  95 37
   Rru_A1122 NONE
   Rru_A1123 NONE
   Rru_A1124 1326548 .. 1326582 +  -6.2  -3.04144   ACATCATGAACCCCG     GCAAGATCGTCCGCCT GTA AGGCGGGCAAGCCGGC     TCTTGCACCTCGGCC  49 6
   Rru_A1125 1326965 .. 1326977 +  -4.8  -4.15657   ATGAGGACGATGGAT                GACG CCGGC CGTC                TTTCTGTCGTTCTCC  65 24
   Rru_A1126 NONE
   Rru_A1127 1328524 .. 1328547 + -10.9  -2.68479   AGCAGAAGGTATGAA          CGCTGCGCG GCAAAA CGCGCTGCG           CTTGGTCTTTGATGC  64 217
   Rru_A1128 1330463 .. 1330488 + -12.5  -3.66378   TCGTCCTGAAAAAAA         AGGGGGCGC-CC CGC GGAGCGCCCCCG         TTTCCATCGAATGTG  82 32
   Rru_A1134 1339024 .. 1339038 +  -4.9  -3.05384   GAAATCCTGAGGAAA               GCGCT TTCCC GGCGC               TTGCGTGCCGCCGGG  46 31
   Rru_A1135 1340400 .. 1340421 + -15.1  -5.58454   CGGATCTGATGGAAA           GGGCGCCCT TCGC GGGGCGCCC            TTTTTTTCGTCTGGG 100 61
   Rru_A1136 NONE
   Rru_A1137 NONE
   Rru_A1138 NONE
   Rru_A1139 1344291 .. 1344308 +  -9.8  -3.91028   TGATCGGAGCGGGGA             GGGGGG CGTTTC CCCCCC              TTATTCCTTTGGCTT  78 38
   Rru_A1140 1346785 .. 1346799 +  -5.7  -3.59315   CGGTCTAACTCTGGT               TCCCA TCGCC TGGGA               TTTGGCGGTCCTTCA  57 143
   Rru_A1144 NONE
   Rru_A1145 NONE
   Rru_A1146 NONE
   Rru_A1147 1355392 .. 1355403 +  -2.2   -3.9392   ATCCCGCGACCTTGG                GGTT ACGG AGCC                 TTCTTTGGGATGGGC  54 106
   Rru_A1155 NONE
   Rru_A1156 NONE
   Rru_A1157 1372822 .. 1372868 + -15.9  -3.35597   TTTGATCTGGAGTTA G-GTCCGGCTCGGGGGGAGGGGG ACG CCCTTTCCGCCCGGGCCG-ACGC TCTTTCGAGGATACC  89 44
   Rru_A1158 NONE
   Rru_A1159 1376535 .. 1376553 +  -5.9  -3.70149   TGTTCCTCGACGGCG             GCGGCGA TGGTT TCGCCGA             TTTCGCTGATCTGGG  59 290
   Rru_A1161 NONE
   Rru_A1162 1381324 .. 1381335 +  -3.6  -4.07568   CGATTTCGGTGACGG                TGCG CTAA CGCG                 TTTTCACGCCAACGG  59 18
   Rru_A1163 NONE
   Rru_A1164 NONE
   Rru_A1165 1383047 .. 1383057 +  -2.4  -2.56596   CGCGGCGGCCAAAAT                 CCTG AAA CTGG                 TCAATTGATCGGGAG  38 7
   Rru_A1166 1383835 .. 1383881 +  -3.7  -2.55668   CGCCGTCTACGCGCC CTGATCGA-CGCCTGCCG-GCC ATGAGC GGAGCGGC-GGCGATCGACCGG CTTGATCTGCGGCTC  40 2
   Rru_A1167 NONE
   Rru_A1168 NONE
   Rru_A1169 1386222 .. 1386245 +  -7.5  -3.40522   GACGATTAATGTCCG          CCTT-TCCCC GGGAA GGGGAGAAGG          TTATCCTCGGGCGAT  56 32
   Rru_A1170 1388137 .. 1388182 +   -14  -3.53224   CCGAGGGAAACCTCG GCGAGGCTGGAGAGGGGC GCTGGTCACA GCCCTTCTCCAGCCGGGC TTTCCCCACCAGATC  86 458
   Rru_A1171 1388785 .. 1388804 +  -5.6  -3.53012   TGACCTCAGGTCGTC            TGCGGCCG CCGG CGGTCGAA             TTTGCGCGCCAGCAC  55 38
   Rru_A1174 1391052 .. 1391079 + -18.4  -4.72272   CGCTAATCATGGAAA        CGGCCGGACCGC TTGC GCGATCCGGCCG         TTTTTCGTCACGGCG 100 35
   Rru_A1176 1392894 .. 1392906 +  -3.3  -3.48276   TCGCCCTGTCGTTAT                GGCTG CGT CATCC                TTGTCTCGGCGAGGC  49 157
   Rru_A1177 1394416 .. 1394439 + -12.4  -2.52896   CCTGACCCTTGGCGG          GCGGCCGG CCTACGCT CCGGCCGC           TCGCTTGCGGGGTCG  68 36
   Rru_A1178 1395885 .. 1395929 + -11.4  -3.09518   GCTCCGGCCGCATGA CCCG-C-CTCGCCCGCCGGC TTCATCC GCCGGCGGGCGATCGACGGC TCTTGACGATTTTCG  68 26
   Rru_A1179 NONE
   Rru_A1180 1398304 .. 1398328 +  -5.6   -4.7629   GGGAACCGCCGGATC          GATCTTGCGC AGCAC GCGCACGACC          TTTTTCAGTTCCTCC  81 395
   Rru_A1184 1403677 .. 1403710 +  -2.3  -3.64933   AAGAAGAAGTAGTCG     GATAG-CGCCCAGGCG GCG CTCCGGCGTGACTATC     GTTTTTTCGAGTTGA  49 29
        rpsP 1404138 .. 1404172 +  -4.1   -3.1355   CTGATGTCTTTTGGG    GTTGTCCGTCCGCTCG CTTT CGGGCCG-CGGACCCC     TTGCCTCTCCCTGGC  45 37
   Rru_A1186 1404828 .. 1404877 +  -3.5  -3.35224   GGATCGATGAGGATG GGGACGGCAAGGGGGGCGCGTCA TGAGTT TG-CGCGCCGTCGTT-CTGACCC TGTTTCCCGAGATGT  47 0
        trmD NONE
        rplS 1406110 .. 1406138 + -13.2  -3.77489   CGCCGGGGTTTTCCC       GGCGG-CAG-CCCC GGC GGGGACTGACCGCC       TTTCCGTCTTGGATT  91 78
   Rru_A1189 1407597 .. 1407653 +  -6.9  -3.73224   CCCAATCCCTGGCCC CCTCGCTGGGGTGACGGCTCCCCCCTG TCA CGGGGGGGATCGGCCAGGGCGGCGGGC TTTGATGCGAGATGA  63 12
        leuD 1408319 .. 1408340 + -15.1  -4.74132   TCTGATCCGTTCAAG           GGGCGCGCC GCCG GGTGCGCCC            TTTTTCATACCGTCT 100 36
   Rru_A1191 1409531 .. 1409569 + -23.3  -3.53224   TTTCCGCTCCGAAAA  CA-CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTGGTG   TTTCGGAAGCAAATC 100 49
   Rru_A1195 1412527 .. 1412549 +  -5.4  -3.18264   GGCGAGCAGGTGGCG           GGGCAGTAGC GCG GCGGCTTCCC           TTGATCACTCGGGCC  50 17
   Rru_A1196 1413683 .. 1413718 + -15.5    -5.055   GACCGGGTCCCAAAA    CGCCCCCTTTCCG CCGTTTCAAT CGGGAAGGGGGCG     TTTTTTCGCGCTTAC 100 48
   Rru_A1200 NONE
   Rru_A1201 1419815 .. 1419859 + -11.1  -3.08679   TTACGCCTTGAAGGC GCGAGGAGCGGGGGTGGCGTC GTT GACACCCCCCCCGCGAACCGC TATTCCATGACCCAC  68 49
   Rru_A1202 NONE
   Rru_A1203 NONE
        sdhA NONE
        sdhB 1423420 .. 1423443 + -13.8  -4.54727   GCGCATGAAAACCGG          GGGCCGTTCC GCAA GGGGCGGCCC           TTTTGGTTTGGGCGA 100 55
   Rru_A1207 1425246 .. 1425262 +    -3  -2.87132   GCCTCATCGCCCGCA             TCA-CCG AAGA CGGCTGA              TATGTCCCAAACACC  40 9
   Rru_A1208 1426892 .. 1426916 +  -5.6  -3.53012   GGCAGCACCACATGA          CCGCCGCC GAAAACCAG GGCGCCGG          TTTGAAACAGCGCGG  54 505
   Rru_A1210 NONE
   Rru_A1211 NONE
   Rru_A1212 1431051 .. 1431079 + -18.9  -3.45571   GACGCGTAATGCGAG        CCCCCCCAGGAAA ACC TTTCCCGGGGGGG        TTCCTGTTTGGGGGC 100 39
        sucA NONE
   Rru_A1214 NONE
   Rru_A1215 1437121 .. 1437164 + -16.6  -4.16016   GGCCAGCAGGCATAA AAAAACGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCGCTGTG TTTCTTGGCGGGTCG 100 47
   Rru_A1219 1439926 .. 1439938 +  -4.7  -3.85698   ACGGCGCCTTGGGGT                GCGGC GGA GCGGC                TTTCTCAGCGGGCGC  59 43
   Rru_A1222 1444537 .. 1444553 +  -5.8  -4.07687   AGTAGCCCCCGCGCC              GGGATG AGAGG CGTCCC              TTTTCAGGGGCGCGT  65 166
   Rru_A1223 NONE
   Rru_A1224 1446714 .. 1446733 +  -3.6  -3.65199   AGTTCCTGGACGATT            TC-GGCAAG AAG TTTGCCTGA            TTTCGCTCACGGATT  51 6
   Rru_A1225 NONE
   Rru_A1226 1449181 .. 1449207 +  -4.2   -4.7254   TCCGGGCCGCGAGGC         CGCCCCTCCCGT TTT ACGGTGCGCGCG         TTTTTCCTGGGGGCT  78 70
   Rru_A1227 1449765 .. 1449794 +  -5.5  -5.69473   GCCGCGCAACCAAAC       GGGGGATCAGGTG GTTA CACCGGGACCCCG        TTTTTTTGTGGTCTC  95 109
   Rru_A1228 1450709 .. 1450751 + -11.5  -2.90194   AAACCTGATAGTGAA GCAAATCGTCGTCGCGATCTG GAT CAGATCGCT-CGG-GATTTGC TCTAGTTCCACGGCT  66 88
   Rru_A1250 NONE
   Rru_A1251 1472470 .. 1472492 +  -3.3  -3.86015   AAGAAGTGCTCGCCC           AGCACGTTC TTGAT GACCGTGCA           TTTCTCCAAGCGGTC  56 146
   Rru_A1256 1478352 .. 1478378 +  -2.3  -4.48903   TCTGCTAAATGCTGT         GGCAAAATG CTCACACTT CATTGTGCC         TTTTAGTCTGTTTTA  66 268
   Rru_A1257 1479561 .. 1479578 +  -7.7  -3.43689   GTTGAGCGGACATGG             GGTTTCG GTAT CGAAGCC              TTATCCTGCCGTTTT  62 81
   Rru_A1265 1487137 .. 1487154 + -10.5  -3.74077   TGACCTTATCGCCGG             CCGCCGG CCCG TCGGCGG              TTTCCCTGTCTGGAG  76 38
   Rru_A1266 1488006 .. 1488022 +  -2.1  -3.31799   GCGCCGCCGTCTGGA              GGTCCTT CTG GGGGCCC              TTCTGGAGAATTGTC  44 52
   Rru_A1267 NONE
   Rru_A1268 1490194 .. 1490210 +  -3.6  -2.61264   GCGGCTTAAAGGAAA              GGCTCG GTGAG CAAGCC              GTTGTCCCTAAGGGA  40 32
   Rru_A1269 1490612 .. 1490624 +  -6.2  -3.48276   TCGCCGCCGCCTGAT                GCCC TTGGC GGGC                TTGTCTAGCCCAAGG  55 118
   Rru_A1272 1497649 .. 1497659 +  -4.6  -3.53012   AAGGAGGAAGGGCGG                 GCTG GAG CGGC                 TTTCAGGCGGCGAAG  52 40
   Rru_A1277 NONE
   Rru_A1278 1505670 .. 1505688 +  -4.5  -3.73953   TTGGCGAAGACGAAA             CCATGGG AAAGG CGCATGG             TTTCATGCGGGTGAT  55 104
   Rru_A1281 1509710 .. 1509733 +    -8  -3.86346   CGGGGCGGGCGAGGA          TCAGCCGCCC TGGC GCGCGGCCGA           TTTCTCGGGCGATCC  69 105
   Rru_A1283 NONE
   Rru_A1284 1512522 .. 1512556 + -21.5  -3.17075   CGTCCCCCCCAAAAA     CCAGCCCCGCCGG CTTTTGTCC CCGGCGGGGCTGG     TTGCGTTCAAGGGGG 100 55
   Rru_A1285 1517409 .. 1517422 +  -2.4  -3.24245   GATTCTGAAGGAAAC               TGTC CCCGTT GACA                TTGGGTTATCACTCA  43 14
   Rru_A1286 1517924 .. 1517959 + -17.8  -3.33399   CGACGATTCCCGGGT    AACAAGAGGTGTACAC TTAA GTGTACACCTCTTGTG     TTGGGTTTGGTTGAA  95 156
   Rru_A1287 1520694 .. 1520736 + -14.1    -3.494   ACGCCTGAGCGCTCC ATGCTTCGGGACCGCCG CTTGCCTCC CGGCGGTCCCGGAGCCC TTCTCTCCGGCCTTC  86 40
   Rru_A1288 1521812 .. 1521843 + -18.1  -3.46138   TCGCTTGCTCAAAAA      CGCCCGCGTATCCC GGAAA GGGAT-CGCGGGCG      TTGTCGTGATCATTT 100 72
   Rru_A1289 1523914 .. 1523926 +  -3.4  -3.72576   CGTCGCCCTCCTGGC                CGAA AGGGG TTCG                TTTCATGACCACAGG  54 90
   Rru_A1290 1524379 .. 1524390 +  -4.4  -3.78953   GGCTGACCGGCGCCT                CCTT TCGC AAGG                 TTTGATCATGCCGCT  57 9
   Rru_A1291 NONE
   Rru_A1292 1526313 .. 1526344 + -17.3   -4.1552   CAGTCGCCGCTGGCG      GCCCTGCGCGGCT AGAGCA AGCCGCGCAGGTC       TTTCTTCACGCGCTG 100 11
   Rru_A1294 1529003 .. 1529019 +  -4.3  -5.03715   GGAAAGAGGGCGTCC              CGCCTAA TAA TCGGGCG              TTTTTTCAAAGTGCT  83 19
   Rru_A1295 1530108 .. 1530140 + -12.7  -3.53012   GGTCCCGGTTCTTTT     CCG-TCGCGCCCCC CGCTCC GGGGGCGCGACCCG      TTTGCCCGGACGCCG  79 45
   Rru_A1296 NONE
   Rru_A1297 NONE
   Rru_A1298 NONE
   Rru_A1299 1534098 .. 1534116 +    -3  -3.08032   TTCGCCGGCCAGGGC             CCGGTGAT AGG GTCGCCAG             TAGTTTTCCACCCGG  44 445
   Rru_A1303 NONE
   Rru_A1304 1540747 .. 1540767 +  -3.1  -4.62783   TCGAAGGGCGCGGTG            GGAAGCGTC ATG GGCGGATCC            TTTTTCGCCTCACTC  71 321
   Rru_A1316 NONE
   Rru_A1317 1556114 .. 1556129 +  -6.8  -4.10453   ATCGCTTCGACCAAG              GCGTCCG GGA CGG-CGC              TTTTCGCGCGATTTA  68 169
   Rru_A1318 1556937 .. 1556964 +   -10   -3.1372   TAGGGGTGGGGCGAT        GAGGTCCAAA AGTCGTGG TTTGGACCTC         TCTTCCTCCCCCATA  65 90
   Rru_A1319 1558404 .. 1558439 + -12.6  -2.74563   GGTTTAGCTACTTCA    TTACCGCCGTCATCGC TTAC GCGGTGATGGGGGTGA     TCGTTAGCCTATCCC  69 118
   Rru_A1320 1559716 .. 1559761 +  -4.6  -2.73771   TGGTCGGCGGTTGAC GACTAGCGTCCGGTGTCT CTCTCCCCCC GGGCACCGGACGCTCCCC CTTTCGACACTCTGA  43 27
   Rru_A1321 NONE
   Rru_A1322 NONE
   Rru_A1323 NONE
   Rru_A1324 NONE
   Rru_A1325 NONE
   Rru_A1326 NONE
   Rru_A1327 NONE
   Rru_A1328 1566751 .. 1566772 + -18.7   -3.8046   GTGAGCTTGTGACTT           CGGGGCGGC ATGG GCCGCCCCG            TTTCAAGTTTTTGCC 100 37
   Rru_A1329 NONE
   Rru_A1330 1568033 .. 1568048 +    -6  -3.29511   CGCTTTTTACAGTTG              GACCGC CAAA GCGGGC               TTGTCAAGGGATCGG  52 86
   Rru_A1331 NONE
   Rru_A1332 1569633 .. 1569646 +  -5.9  -3.54424   TCGCCGCGCTGACCG               CGGCG TTGG CGCTG                TTTCCGCCGATCGCC  55 29
   Rru_A1333 1570249 .. 1570299 + -11.8  -4.54343   CAAAGCTTTGAGGAA TTGCTCTAGGGTCTGTCCGCTTGA TGC TGAAGCGGCCAGACCCTGGATCCC TTTGTTTGAGTTTGT  95 142
   Rru_A1335 NONE
   Rru_A1336 1573478 .. 1573493 +  -4.6   -3.3197   GACTATCCCTTCTAA              GGTCCT GTTA AGGCCC               TTCTAAGGATCATGT  49 26
   Rru_A1337 NONE
   Rru_A1338 1576258 .. 1576274 +  -9.3  -3.14132   CGCGTTTCGCGCTGA              GGCCGGC GAT GGCGGCC              TTAGTCCAAGGGCCG  61 26
   Rru_A1340 1578904 .. 1578917 +  -2.3  -3.05844   CGGTCTTACAAGGAT               CCCGT CATG ACCGG                TATTCCCCTCGCCGC  41 16
   Rru_A1341 1579782 .. 1579813 + -20.9  -4.13767   CCTAGGGCGCGGCGC      CACCCCCGGCGGG GCCCTG TCCGCCGGGGGTG       TTTTCCCGTAGCGGC 100 256
   Rru_A1344 1584777 .. 1584789 + -10.5  -3.31162   ACCCAAGCTGGCGAT                CGGCG ATC CGCCG                TCTGTTTGATCCTCG  68 116
   Rru_A1345 1585668 .. 1585698 +  -7.4  -3.98282   GGGCAGGGGGATTGT       CCGCCGCCGCCT GATCAGG GGGCGACGACGG       TTTGCTTCATCTCAG  65 12
   Rru_A1348 NONE
   Rru_A1349 1590798 .. 1590810 +  -7.7  -2.61264   ACGGCTGCGCTTTGG                GGTTC TAA GAACC                ATTATCGATCAAACG  52 18
   Rru_A1350 1592143 .. 1592171 +  -3.1  -4.08064   GCAGGGGCGCGACAC       CACGC-CCGGCCG CTGAA CGACCGGTGC-TG       TTTTCGGGCCCGATT  59 10
   Rru_A1351 1593974 .. 1594004 + -18.3  -5.07652   AGACTGAGACCCTCG      GGCCCGGTGCGCGC TTCT GCGC-CGCCGGGCC       TTTTCTTTTGGCGAG 100 44
   Rru_A1352 1594260 .. 1594287 +  -9.8  -3.85082   GCTTAAGGGTAAGCC        CGATCACGTCGC CAAA GCGACGTGAGGG         TTTGCTGATCTCTTT  76 1
   Rru_A1353 1594925 .. 1594941 +  -3.5  -3.56643   AGCCAAGGCCTTGAC              GGCCGCG CGC CCCCGCC              TTTCCCGGCTGTCGA  51 40
   Rru_A1354 1595470 .. 1595526 + -16.7  -4.19238   GGGCGGGGGCGGTGA TCGCCACGCGAAAACGCCCGGACCCCG CTTGC CGAGGTCCGGGCGTTT-CGT-TGCCGG TTTTCGAGTTAGCGC 100 71
   Rru_A1384 NONE
   Rru_A1385 1635876 .. 1635911 +  -5.5  -3.53012   GCAGGAATACGCCAT   CA-CCTGAGCGC-GCGAC AGC GGCGCCGCG-TCAGGGTG   TTTCGGGAGCGCGCG  55 19
   Rru_A1386 1638239 .. 1638262 + -18.2  -3.09878   TGAACCGCGAAACAT          CGGCCGGCAT CTCG ATGCCGGCCG           TGTTGCGTGGGTCGG  86 64
   Rru_A1388 1640979 .. 1640989 +  -2.4  -3.90112   AAGCGCTGAGGGGCG                 CGGC GGG GGCG                 TTTCGTTCGGCGGGA  54 32
   Rru_A1389 1642108 .. 1642124 +  -2.9  -4.36914   GCTGGGCTTTTGCCG              GGGGC CAAGCAC GTCCC              TTTTGTACAACAGCA  66 208
   Rru_A1397 NONE
   Rru_A1398 NONE
   Rru_A1399 1652937 .. 1652977 +  -2.6  -4.56597   ACGAAAGCCAGTTCA TGGC-CGCCGGCTGAC-GG CAAACC CCAGTCA-TCGGCGCGCCC TTTTTCCGAAAGACG  66 12
   Rru_A1400 1653520 .. 1653534 +  -4.2  -2.75963   CGGCTCCGCGCAGCC               TCTCCT AAA AGGAGC               CTTTACGATGCGCAT  43 18
   Rru_A1401 NONE
   Rru_A1402 NONE
   Rru_A1403 1657744 .. 1657781 +  -3.5  -3.46687   AAGTATTGAGATCGA   TGATGGGAAATGGCGA TGGGGTT TCGCCAAT-CCTGTCA   TTCATATTTAAAATT  49 32
   Rru_A1404 NONE
   Rru_A1405 NONE
   Rru_A1406 1661620 .. 1661635 +  -2.4  -3.05775   CGATGACCTGTCTTT              CCCCGT TGTG GCAGGG               CTTTTCGCCGATGGT  41 35
   Rru_A1407 1662670 .. 1662726 + -14.2  -3.10012   TTGATTGGCCAAGCC CTTGACCTCGCCGGCGACGACGGCGA ATCCC TTGCCGGCCTCGCCGGCGCGGGCGGC TTCGATGGTGGCGTT  73 519
   Rru_A1414 NONE
   Rru_A1415 NONE
   Rru_A1416 1673688 .. 1673708 +   -14  -3.64703   GTCTTCACACGAAAA            CAGCCCGG AAGAA CCGGGCTG            TTTCGCTGCGGGCAA  88 99
   Rru_A1420 NONE
   Rru_A1421 NONE
   Rru_A1422 NONE
   Rru_A1423 NONE
   Rru_A1424 NONE
   Rru_A1425 1685244 .. 1685275 + -10.9  -4.10429   GTTTTTCTTGATAAA      TCCCCGCGATGGCG ATGAA CGCT-TCGTGGGGA      TTTTGCCGAGTCCTT  84 83
   Rru_A1426 NONE
   Rru_A1427 1688164 .. 1688189 +   -14  -2.66748   GACCTTAACGACCCC         GGGGCGGGGA AGTTGA TCCTCGCCCC          CTCTCTTTCTTATCG  72 41
   Rru_A1428 NONE
   Rru_A1429 NONE
   Rru_A1430 1689540 .. 1689565 +  -3.9  -3.21593   CATTGTCATTGCCAT         GATCACCCTTG ATGG CGCGGATGATC          TCTTGTAACGGCGTA  45 14
   Rru_A1431 1690789 .. 1690817 +  -2.2  -4.11216   GCAGCGCACGGCGTA        TTTCTCCAGGCC GCGCA GGCCCGGGGTGG        TTTTGCGCGTGCAGG  58 457
   Rru_A1437 1700994 .. 1701026 + -22.8  -4.25104   TAAGGAGTCGCGTCG      CGCCGCCGTGGGGA TGCCC TCTCCACGGCGGCG      TTTTCATAAGGGGCC 100 49
   Rru_A1438 1701660 .. 1701679 +  -3.5  -3.01712   ACCCGGTGGGGTAGG            GGATCGG GGGGTG CCGATCG             TCTTGGAGGAAGGGG  43 53
   Rru_A1439 1702796 .. 1702808 +  -3.3  -4.56597   CGATTGCGGAGCGGT                CGCGA TTT TGGCG                TTTTTGGAACCGGGG  68 130
   Rru_A1440 1705416 .. 1705447 +    -5  -4.37886   AAATCCCCCTCATTG      TCCTCG-GCCGCGCG GGT CGAGCCGCTCGATGA      TTTTCTCCAGCATCG  68 128
   Rru_A1442 1706745 .. 1706755 +  -8.2   -2.5655   CCACAAAACAGCATG                 CCGG CCT CCGG                 GTTGATATCGGTGCC  52 366
   Rru_A1444 NONE
        nrdF 1710909 .. 1710956 +  -9.2  -3.55444   AACGAAGCGGGCGTC GACTCGTTAGAGGGGCTGTCGGC CAA GCCGGCAAGGCCTTTAAC-AGTC TTTGCAAGATGAGAA  66 81
   Rru_A1446 1711570 .. 1711607 + -10.6  -3.54424   CGGTGCCGTGACCGC   CTTC-CGCCTGCGGC CCGCTTAAA GCCGCCGGCGTGAAG   TTTGGGGCGCTCAGG  70 115
   Rru_A1451 1716698 .. 1716721 +  -3.1  -6.11644   GGCCCCCCTGGTCTC          GCGCGCCG CATCAAAGC CGGC-CGC          TTTTTTTTTAAGTCG 100 77
   Rru_A1456 1720390 .. 1720426 +  -9.9  -3.55444   GTCGCCTATGGCTTC    CGCCTTCCGACCTCCAG GCG CAGGGGGCCGAACGGCG    TTTCGACCGTGCGGC  70 103
   Rru_A1460 1727606 .. 1727624 +  -9.6  -2.75229   CTGAAAGATCGACCA             GATCATCG CGG CGGTGATC             TCCTTGCCGCTTTTC  55 524
   Rru_A1462 1730089 .. 1730111 +  -7.6  -3.38991   AGAACGCCCGCCCCG           GCACGGCCTC GGT GAAGCCGTGG           TCTTGTTCAGCCCGT  59 161
   Rru_A1466 1733171 .. 1733216 + -12.7  -2.50016   CCGGGAGAGGGCTTA TTTAGAGCGGTGAGCGTGATAT CTG GTCTC-CGCTCACCGCTCCAAG GTCTTGATCGTCCAG  68 66
   Rru_A1476 1742753 .. 1742804 +  -7.1  -4.07568   GACCCGGTTTTTCAA GACCTGTCCGCGGCGATCCGATCC CCTTT GGCAAGGGT-GCCGCGGAGAGGGC TTTTAGGCGGACGCC  68 39
   Rru_A1477 NONE
   Rru_A1478 1744819 .. 1744835 +  -2.9  -3.71848   GGGCTGAGATATAAG              CGATCGA GGG TAGGTCG              TTATTAATCAAAGGA  52 142
   Rru_A1479 NONE
   Rru_A1480 NONE
   Rru_A1481 NONE
   Rru_A1482 1750066 .. 1750078 +  -4.8  -4.07568   AACTGTTCGGCCATG                CCCA GGCCA TGGG                TTTTGCCCGCGCCGA  62 250
   Rru_A1488 1757431 .. 1757446 +  -6.2  -2.60212   CACGGATGAATACCA              TTATCG TGCT CGATAA               ATTATGAGATGCTCC  46 10
   Rru_A1489 NONE
   Rru_A1490 NONE
   Rru_A1491 1762225 .. 1762235 +  -8.2  -2.56273   CCGCAGCAATTGCCC                 GCGG TCG CCGC                 TGAGTTCCGTCTGAT  52 466
   Rru_A1494 NONE
   Rru_A1495 NONE
   Rru_A1496 1768088 .. 1768134 +  -7.6  -2.63073   TGAGGCGATGGCACA CAAGGCGGGGGGGCGATGACGG CGC CCGGCACGGCCCCCGCGCCCGC CTCTTCTTCGGCGGC  52 7
   Rru_A1497 1769914 .. 1769938 + -11.3  -3.89346   ATCCACGCGGGCCCA          GGCGCCGGGGG GAA CCCTGGGCGTC          TTTCTCCGATCAAAA  77 163
   Rru_A1500 1775928 .. 1775939 +    -3  -4.43392   GTTTGGGGATTGTTC                TGAT TATC ATCA                 TTATTTTGCTTTTGA  63 463
   Rru_A1501 1776348 .. 1776363 +    -6  -2.94912   AGTAACCCCGCGCGC              GGGCGG ACTC CCCCCC               TCTCTCCGTTCGCGC  48 36
   Rru_A1502 1776686 .. 1776715 + -20.8  -4.66537   CTGCCCTCATGAAAG       CGGGGCTGGTGG ATGATC CCACCAGCCCCG        TTTTGTCTTGCGCCG 100 57
   Rru_A1508 1783731 .. 1783753 + -13.4   -3.1634   ATGATTTCGCCGCGG           GCGGCGATGA CAT TCTTCGCCGC           TTCCATGGTTTCGCC  72 387
   Rru_A1510 1784664 .. 1784677 +  -2.3  -2.96216   TCCCAGACCCGATGA               CAAGC CTTA GCCTG                TGTATGATCATGCGC  40 16
   Rru_A1511 1785763 .. 1785773 +  -2.4  -2.63208   CTTGCGGCTATGAGG                 GCGG CGG CCGG                 AGTTTTTGACTGGCC  38 28
   Rru_A1512 NONE
   Rru_A1513 1786752 .. 1786764 +  -3.3  -2.91264   GTAATCATGATGGAT                CTTGC CCA GCCAG                TGTATCGATACACAG  42 58
   Rru_A1517 1791087 .. 1791101 +  -4.2  -3.20078   GCGTCGATGGTGTGA               CCCAGT AGC AATGGG               TGTTCATCTCGGATC  48 18
   Rru_A1518 NONE
   Rru_A1519 1791839 .. 1791850 +  -2.2  -2.94032   GCGCCCAGTTTCCTG                CAGG TTTC TCTG                 GTTTGGTTGCGGCGT  40 135
   Rru_A1520 1792349 .. 1792390 +  -6.3  -3.06915   CCGCTAGACGATGGG GACGCCGTGGGCGATGCCC GGGA GGGCACCGCCTAAAGCCGC  TTCGGTACGGTCCGT  49 215
   Rru_A1524 1795733 .. 1795763 +  -5.3  -3.67597   CGAGCATCCACGGCT      CTTCGCCCGCCGCC CAGG GGCCG-GGGCGGAA       TTGTTCAATCAGCAC  57 442
   Rru_A1527 1798685 .. 1798716 + -24.5  -5.06451   CTTGGCCAAAGAAAA      GGGGGGCGCCGAC GATCAG GTCGGCGCCCCCC       TTTTTTGACGTGATC 100 50
   Rru_A1529 NONE
   Rru_A1530 1801621 .. 1801631 +  -2.4   -3.1247   GGCGCGGGGACCATC                 GCCC TTG GAGC                 TTCCGTATGAGCCGT  41 5
   Rru_A1531 1805193 .. 1805211 +   -16  -4.25104   CGCATTTGATCCAAG             GGCGGGGA TGA TCCCCGCC             TTTTGCTGGCGGAGC 100 32
   Rru_A1533 NONE
   Rru_A1534 1808936 .. 1808946 +  -8.2  -2.71924   GGTAGGGGTAGAATA                 GCCG AGC CGGC                 CTTTCGCGCAAGCTC  53 497
   Rru_A1536 1811394 .. 1811408 +  -9.2  -3.53012   CACGTAAGGATCGCC               CGCCCT TTT GGGGCG               TTTGAGCCAAAGCCA  66 34
   Rru_A1541 1815617 .. 1815628 +  -2.2  -2.84527   CCTCTGTCGCCTGAC                CGGT TTGG ATCG                 CTTTCATGACCCTTG  40 27
   Rru_A1542 1817573 .. 1817614 + -12.1  -3.29144   CGCCGGCCTGGGCGG CGCGCATGGCCAGAGCCCGG GTG CCGGGAAA-GGCCTTGCGCG TTGTCGCGACCATCG  71 465
   Rru_A1544 1820956 .. 1820966 +  -3.2  -3.40639   GCATCGCCGCGCTCG                 GTTC CGT GGAC                 TTCGTTGATCGCCTT  48 426
   Rru_A1547 NONE
   Rru_A1548 1825998 .. 1826031 +  -6.1  -3.69354   GCGCCCCGTTTCCGC    CCCG-C-TCCGCTGT CCCGAT ATAGCGGATGGCGGG     TTTCCGATTATCCAC  57 285
         tig 1827474 .. 1827507 + -17.5  -4.63486   GCCTCTGGACAGAGA     CGGGGCCCAGGTCC TATGTAT GGACC-GGGCCCCG     TTTTCTTGCCCGCCT 100 84
   Rru_A1550 1828492 .. 1828506 +  -4.9  -4.23007   CTTCCCGGAAACGAT               CGGTC GCCGG GGCCG               TTTTGGCATTGTGTG  65 219
        clpX 1829944 .. 1829973 + -17.9  -3.36823   GCGCCTGATATCAGC       CACCGGGGCAAAG GGCT CTTCGCCCCGGTG        TTCGATTTTGCCCGG  95 33
   Rru_A1552 1832864 .. 1832899 +   -16  -3.55622   GAATTGATTTCGGGG    GTCAGGGGCCCGCCAC GCAA GCGGCGGGCCCCGAAC     TTTGGGGGGCTTGGC  93 127
   Rru_A1553 1833557 .. 1833602 + -12.5   -5.4505   TCGCCGCTCTAGATC TCGTGGGAGGCGGGAGGGATC GTTT GGTCGATCCCGTCTCCCGGGA TTTTTTCTTGCAAAG 100 174
   Rru_A1555 NONE
   Rru_A1556 NONE
   Rru_A1557 NONE
   Rru_A1558 NONE
   Rru_A1559 NONE
   Rru_A1560 NONE
   Rru_A1561 1842955 .. 1842973 +  -2.2  -2.59431   CAATGGCTCTTTGAA             GCGGACGG GAA CCGATGGC             TGACTTCTGGGGGGG  38 4
   Rru_A1562 NONE
   Rru_A1563 1844523 .. 1844546 + -10.2  -4.57569   TGAACCAACCATGGT          GCGGCTCCCCG CTT CGGGG-GCCGG          TTTTTCGGGAACTCA  89 58
   Rru_A1564 NONE
   Rru_A1565 NONE
   Rru_A1566 1847485 .. 1847501 +  -3.6  -3.26596   CCGCCCACTGAAAGA              GGCCGT GATGA ACGCCC              TTCCGTTGCTTTCGA  45 30
   Rru_A1567 NONE
   Rru_A1568 NONE
   Rru_A1569 1851333 .. 1851346 +  -5.2  -3.65902   GTTCTTTGCAATCGA               CCGC GTAAGA GCGG                TTTCGGTGAAATCGG  54 18
   Rru_A1570 1852240 .. 1852257 +  -2.5  -4.55287   CCGGACTGACTTTCA             CTGGCCG CATC CGGCCCC              TTTTCTCTCAGTAGA  66 32
   Rru_A1571 1853984 .. 1853994 +  -2.4   -3.4072   GGGTATGAGGCAAAG                 CGGC GAA GGCG                 TTATACTCCCCGCTG  44 33
   Rru_A1572 1854475 .. 1854485 +  -8.2  -3.16564   AAGTCTTCTTGAACA                 GGCC TGA GGCC                 TTGCTGGCCTAAACA  57 40
   Rru_A1573 1855360 .. 1855376 +  -3.6  -3.53224   CCGCCCGGTTAACGC              GCCCAA AGCCG TCGGGC              TTTCCGCCGAGGATA  51 334
   Rru_A1575 1856644 .. 1856671 +  -9.8  -3.55622   CCAGGCCTGCCGCGA        GCATGGGCGGGG TCGT TCCCGCTGATGC         TTTGAGCGCCTTGGA  70 1
   Rru_A1576 1858102 .. 1858114 +  -6.2  -4.59109   GCGCGGCGCGCGACA                CCGG CGAGC CCGG                TTTTTCGAAAGTGTG  76 52
   Rru_A1577 NONE
   Rru_A1578 NONE
   Rru_A1579 1860792 .. 1860804 +  -6.9  -3.01134   CTTGCGCGAGGGCAA                GGTGG TGG CCGCC                TGATTATTGGTTTGG  52 10
   Rru_A1580 1861268 .. 1861283 +    -6  -3.14051   AATCGCGCCCCTGAT              GTCCGC CTCG GCGGCC               TGTTCGTCGCCCTGA  50 27
   Rru_A1581 1861768 .. 1861786 + -11.6  -3.02043   CCTGACGCTCTGACA             CGGCCGCC TAA GGCGGGCG             TGTTCGCCAAGCGTT  68 28
        dnaE 1865400 .. 1865411 +  -2.2  -3.77219   CAGGATCACACCTCC                CGTG TCTT CATG                 TTTAGGTTGCATCCT  52 71
   Rru_A1583 NONE
   Rru_A1584 NONE
   Rru_A1585 1870300 .. 1870311 +  -3.6  -4.19258   GTTCCGGTGTCGAAG                GGCT TTCT GGCC                 TTTTGACTCAACTGT  62 151
        rpsB 1871194 .. 1871219 + -19.1  -4.87291   GCCCCCCCGAGACCA         GATGGCGGCGT GCAG ACGCCGCCATC          TTTTTGGTTCGGCTC 100 67
         tsf 1872331 .. 1872373 + -15.6  -3.07344   GCGTCAAACGCCTGT TGGCCGCCGGGTTCGGGTC TCTTAT GATCCGG-CCCGGCGGTCG TCTGTTCCCGCCTGG  83 59
   Rru_A1588 NONE
         frr NONE
   Rru_A1590 NONE
   Rru_A1591 NONE
   Rru_A1592 1876598 .. 1876621 +  -6.6  -4.57063   CCACGCCGCGGCCGC          CTGACCGGGG ATTG CGTCGGTCGG           TTTCTTATCTTTTCC  76 22
   Rru_A1593 NONE
   Rru_A1594 NONE
   Rru_A1595 1880989 .. 1881030 +  -9.2  -3.53444   GAAGGTGTCGCGGCG GGTGGGGGGAGGCCCGGC GGCAAA GCCGGGGCTCCCAACGAC  TTTGGGAAGGCGTCG  66 85
        fabZ NONE
   Rru_A1597 NONE
   Rru_A1598 NONE
   Rru_A1599 1884531 .. 1884571 + -24.4  -2.62396   TTTAGATTTAGATCA  GGATTCAGATTTCAGGTC GATCA GACCTGAAATCTGAATCC  TGATCTAAGGCGGTG 100 43
   Rru_A1602 1890127 .. 1890139 +  -6.3  -3.37464   CAGCATCTTGATCTG                CATGA AGG TCATG                TTCTGGGCTTCATCG  55 249
   Rru_A1604 NONE
   Rru_A1605 NONE
   Rru_A1606 NONE
   Rru_A1607 NONE
   Rru_A1608 1903734 .. 1903764 + -10.4  -3.29144   TCTCTTGCTATCCCC      CTGGCGGCGGGGC ATTCGG GCCTCGCC-CCGG       TTCTAAAGAGGATCG  68 63
   Rru_A1609 NONE
   Rru_A1610 1904940 .. 1904982 + -19.4  -2.55392   GCCTCGCGCTCCCTA GATCAAACTGCGTGAAATGG CCC CCATTCAACGCAGTTTGATC TAAATTCAATAGATT  88 11
   Rru_A1614 1908614 .. 1908639 +  -6.8  -3.54424   ACGCAGGCGCTGACC         CCGCTG-CCGC AGGTG GCGATCAGCGG         TTTGCCAAGATCGAC  58 171
   Rru_A1617 1911783 .. 1911841 +  -5.2  -3.92832   CGAGAGCGATATCGT GCGATAG-CTGCCCGCGCCCTCGCCTTG GCGGA CAAGCCGGGCGTG-GGGCGGACCATCGG TTCTTTCGACGATTT  63 163
   Rru_A1619 1912772 .. 1912782 +  -3.2  -4.25848   AACTTGGAAAGAGAT                 CGAG GAT TTCG                 TTTTGATGGGGCCTT  62 219
   Rru_A1620 1913786 .. 1913797 +  -3.6  -2.54166   CATCGTGGCGCAAGG                GCGG AATC TCGC                 GGTTTTCCTTGGGGC  40 508
   Rru_A1622 1916247 .. 1916265 +  -8.8  -4.56775   CGCTCCCCATATCAG             GGCCCC CTATGTC GGGGCC             TTTTTCACAGGCGCT  84 499
   Rru_A1624 1917649 .. 1917677 +  -3.8  -3.64103   GAACCAATCATCGTG       TCCCACTC-CGCT TCGC AGCGTGAGGGCGA        TTTGGCCTGTCGATG  51 92
   Rru_A1625 NONE
   Rru_A1626 1919385 .. 1919397 +  -9.1  -3.24747   CTCCTGATAGAGCCG                CAGCC TTT GGCTG                TTGGTGCTGTCGACC  61 238
   Rru_A1630 NONE
   Rru_A1631 1923554 .. 1923585 +  -2.1  -3.85698   GCCGCGCGCATGGAG      GCCGGCGGATCGGC CGGGC GCAGG-CCGCTGTC      TTTCTGGAAGAAGAC  54 498
   Rru_A1645 1934132 .. 1934144 +  -6.9   -3.5393   CGCCGCCCGCCCCAG                CCGCT GAC GGCGG                TTTGGGCGCGATCGT  58 19
   Rru_A1646 1935147 .. 1935167 +  -5.4  -3.39018   CCAGGCAGTGCGCAC           CGTCACGCG TCAA CGCG-GATG            TCTTTGCCCTCGTCA  52 509
   Rru_A1648 1940478 .. 1940489 +  -2.2  -2.72344   AGGAAAAGGGCTTCA                CCGT TGTG ATGG                 TCGTTCACGATGCGC  39 109
   Rru_A1649 1940787 .. 1940806 +  -4.8  -3.84451   CCGGTCGGGCCAGTC            GCCCAGGC GGAA GGCGGGGC             TTTGGGTTTGGCGGG  58 132
   Rru_A1653 NONE
   Rru_A1654 1946655 .. 1946670 + -10.4  -4.56775   ATGCGGGTTCACCTT              GGAGGG ATAC CCCTCC               TTTTTGAGGCCGGAT  89 508
   Rru_A1656 1948040 .. 1948068 + -12.3  -3.31144   CTTCGGCCCACAGCA        GCCCGACCTGGGT TTC GCCCAGGCCGGCC        TTGTGCCAATGCACG  71 525
   Rru_A1658 1950717 .. 1950734 +  -3.3  -4.63486   CGGAACGAGCGCGAC             CGCTATG CCGC CCTGGCG              TTTTGTTGGGCCGAT  70 141
   Rru_A1659 NONE
   Rru_A1660 1953738 .. 1953755 +  -8.3  -3.25073   TGGCATGCTGGCTGC             GGCGGCC CTCG GGCCGGC              TGTTGATATTGCGGC  58 328
   Rru_A1663 NONE
   Rru_A1664 1956173 .. 1956184 +  -3.6  -3.10597   TGTCCGCAAGGCTTG                CCCG CGCG TGGG                 ATTTTCGCTAAACAA  43 49
        rpmF 1956484 .. 1956503 +  -2.8  -2.66733   CTGAAACGGGATGGT            GCAGGTGAG CAA CTC-CCTGG            TCATATCGGTTGACG  38 65
   Rru_A1666 1957516 .. 1957532 +  -4.3  -2.78384   TTTGCCCAGTACCGT              CAGTGTG AGC CACGCCG              TCTGATCCGACCCCC  43 4
   Rru_A1667 1958617 .. 1958633 +  -4.4  -3.25478   AAAAAGGCCAAAAAC             CCGA-CG GGGT CGATCGG              ATTTAGTTTTTTCAT  48 39
   Rru_A1668 NONE
   Rru_A1669 1960139 .. 1960157 + -13.1  -3.59262   CCTAAACGGTTCCAA             CGGCCCC CTCGT GGGGCCG             TTTCCGCGTCTGGGG  82 306
   Rru_A1670 NONE
   Rru_A1671 1962718 .. 1962734 +  -9.3  -3.14132   CCCGCGTTCCAGCCA              GCGCCGC TGC GGGGCGC              TTGGTCGGCCAAGGC  59 234
   Rru_A1673 1963201 .. 1963237 + -13.5  -4.85782   TCGACTGGATCACCG    CGAACAGCCGGCCCGGG TGA CGCGGGCCGGCTGGAGG    TTTGTTTTTAGAAGG 100 6
   Rru_A1675 1965451 .. 1965471 + -14.1  -5.50313   AGCGATCCAGATAAG            CCAAGTCCT TGA AGGACTTGG            TTTTTTGCTTTTGTC 100 154
   Rru_A1676 NONE
   Rru_A1677 1967775 .. 1967785 +  -2.4  -3.66883   CGGCCAGCTCCGCGT                 CGGG CGC CCCC                 TTTGACATGTCTTCG  49 63
   Rru_A1678 1969265 .. 1969286 +  -2.9  -2.57132   ATATCCAGGTCGTGC           GCGGCGT CAAGGGCT AGGCCGC            CTTGTCCCCCACCAG  38 9
   Rru_A1679 NONE
   Rru_A1680 1972990 .. 1973004 +  -2.8  -3.53012   TTAAGGACCCTCCGG               CCATGA AAG TCATCG               TTTGCGGCGCCGGAC  47 55
        trkA 1974505 .. 1974527 +    -9  -3.29461   CCGATCGATCCTGGG           CCCGGCGCGT GTA GCGCATCGGG           TTCTCCCACACATTC  63 162
   Rru_A1682 NONE
   Rru_A1683 1976234 .. 1976248 +  -5.6  -3.01712   GGAAGCACCGGTTTT               TGCCGC GCT GCGGAA               TCTTCGCCCCGCGAA  49 135
         hfq 1976672 .. 1976701 +   -15   -3.3972   ATCACGATCAGGAAG       GC-CCGCCGTCCG CATCC CGGGCGGCGGTGC       TTCATCCTTTTCTCC  86 59
   Rru_A1685 1977968 .. 1978007 + -22.1  -4.72272   GACCACCGAAAAAAA  GCCCCCTCCGCGCCCCG CCAAAA CCGGGCGGGGAGGGGGC   TTTTTCGTGCGAAAA 100 39
   Rru_A1686 1978879 .. 1978895 +  -3.5  -5.06414   ACCGCGATATCTATG              CCCCCTG ACC CTGGCGG              TTTTTCTTGCGCGGC  80 18
   Rru_A1687 1979742 .. 1979752 +  -6.8   -2.6563   GCCAGACGGATGCGG                 TGGC GGT GCCA                 TGAATTATTCACCCG  49 12
   Rru_A1688 1980878 .. 1980908 +  -3.8  -4.07568   CCCTGCATGCCCAGG       CCGGCGCTGGCGAT GCG ATCGCGGTCTTCGG       TTTTCAGCGACCGGG  61 446
   Rru_A1692 1983992 .. 1984021 + -10.8  -2.57344   AACGTTCGCTCGCGC       GAGAAATCCTGC GCCAGG GCAGGATTTCCC        ATTGTGGAGAAGCTG  60 124
   Rru_A1693 1985323 .. 1985354 + -18.7  -5.06414   CCTTTGGTGATTGAC      CGGCCCGGACCGC CTTGGC GCAGTCCGGGCCG       TTTTTGTTGCGCCGG 100 46
   Rru_A1694 1986262 .. 1986288 + -14.5  -4.57353   TTGCTGGGATCCCCA        GACCGCGAGCGG TGAA CCG-TCGCGGTC         TTTTCTCTCCTAGGA 100 11
   Rru_A1698 1989571 .. 1989584 +  -3.1  -3.38272   TGGTGATTTCCCGGG               GCACGA TCA TCG-GC               TTGTAGATGCTGGTC  48 429
   Rru_A1711 2004542 .. 2004556 +  -5.6  -3.90112   GCTGTTCGATCTCTT               CCGTCG CCT TGGCGG               TTTGATTGGCCAGGG  63 337
   Rru_A1714 2007871 .. 2007887 +  -7.2  -3.28712   CGCGCCAAGCAGCAG              CCGGCG GGTTA TGCCGG              TTGTCGGCGGCAGGG  54 199
   Rru_A1718 NONE
   Rru_A1719 2012593 .. 2012623 + -12.6   -3.1372   CCTGATCGAAGCGCC      G-CTCGGGGAGGC CTAGGC GCCTCCCCGGGAC       TGTTCGTCAACCATC  74 36
   Rru_A1720 NONE
   Rru_A1721 2014830 .. 2014841 +  -7.2  -2.51871   CTCCACCCGGGTTTT                GCCG GCGG CGGC                 CCTTTTCCTCTGACC  48 1
   Rru_A1722 2015797 .. 2015831 + -10.1  -3.61517   GGGCGAGGCCCTTGG     GATCGTCGATATCGA GCAGA TCGATATAGCCGATC     TTCTTGACGACGCCT  67 250
   Rru_A1724 2017866 .. 2017881 +  -6.1  -3.03203   CCGCCGTCTCGTCTG              GAGGC CCGTCC GCCTC               TCTGGTTATTGGTCC  49 43
   Rru_A1728 2024843 .. 2024855 +  -9.1  -2.90901   ACGCGACGCCGCGGT                GCGCA CGC TGCGC                TCTGGTTAAACCTCT  59 4
   Rru_A1730 2026542 .. 2026556 +  -4.2  -3.60792   GATCAAGCCCAGGAA               TCTTCG CCC CGATGA               TTTCCCGATTGGAGG  51 273
   Rru_A1736 NONE
   Rru_A1737 2030955 .. 2030988 +  -6.7  -3.62864   TATCCTCTATGGTAC     CTTTACCGAATACCT TTCA GGGGAATCGGTAGAG      TTTACAGTACCTTTA  60 473
   Rru_A1740 2032012 .. 2032060 +   -11  -3.60627   GTGATCGAAGCCTGG GCTGGTGACGCGCCGGTGGGCGCC ATC GGCGCCCAGCG-CGT-TCAGAAGC TTTACGATGGCATGC  77 37
   Rru_A1741 2032887 .. 2032900 +  -6.7  -4.62471   GCTAAGAACGAATGA               GTTGG ATGT CCAAC                TTTTTCAAAGTTGGA  78 49
        uvrA 2047166 .. 2047209 +  -4.5  -3.53012   TATCTCTCGGCCCTC GCCCGGCGCAGCG-C-GTAAG GCGG CTTGCCGACGATGGGGCGGGC TTTCAGCCGAGCAGG  52 8
   Rru_A1755 2049680 .. 2049692 +  -9.1  -2.75074   TAGCGTTCGACGGAA                TGGCC CTC GGCCA                TGGTCTTGAAATCGG  55 197
   Rru_A1757 2051630 .. 2051645 + -11.8  -3.02144   CCTCACAAAAAAACA              GGCCCG GAAA CGGGCC               TGTTGAGAGGGATAG  68 72
   Rru_A1760 2054056 .. 2054067 +  -7.2  -3.29511   CCCGCCACGGTTGCC                CCGG CTGC CCGG                 TTATGGCACCGTCCC  56 112
   Rru_A1761 2054719 .. 2054752 + -18.1  -2.80077   ACAAGGCCCCTCTTT     CCGCCGCTCGCCGGA TCGC TTCGGCGGGCGACGG      TCGCTTTTATAGGGC  86 40
   Rru_A1766 2059568 .. 2059593 +  -7.5  -3.31144   CCCGGCTGACGGTTT         CGCCGCGCT TGACCAGC AGCGCGTCG          TTATGGGCATAGGCG  56 189
   Rru_A1781 2073747 .. 2073791 + -10.6  -2.67515   CGACGTGGTGGACCA GCACG-CCGCAGGCGACG-CGG CTT CCGGCGTTGCCGGCGGGCTGGC TGATGTAATCATCGG  60 185
   Rru_A1784 NONE
   Rru_A1785 2076624 .. 2076649 + -19.1  -5.24531   ACCAGAATAACAAAA         CGCCCTCCGAA TCGC TTCGGAGGGCG          TTTTTTGTGGGACGT 100 157
   Rru_A1788 2080132 .. 2080145 +  -3.8  -3.23274   GGGCGGTCCCAAAGC               GCTC GAGGAG GAGC                TTCCATTATGCAGCG  45 148
   Rru_A1789 2081233 .. 2081263 + -13.3  -3.08679   ATCGACGGATAGCAA      AGC-AAGGCGGCCC CCGT GGGCCGCCTTCGCC       TATTCCATCCGACGA  76 59
   Rru_A1800 NONE
   Rru_A1801 2095673 .. 2095723 + -10.3  -3.78775   AGGCATTCTCGCGAA CCTGCTCGATCGTCGCGGCTATT CCCTT GATCGCCTCGACGGTCTTGCGGG TTTCCTCCTGAACGG  74 346
   Rru_A1804 2101404 .. 2101415 +  -4.4  -3.65902   CCTGATCGGCGTCTT                GCAT CAGC ATGC                 TTTCCGTCAGCTCCA  55 416
   Rru_A1806 NONE
   Rru_A1807 2105969 .. 2105981 +  -6.2  -3.29144   GGGAATGCGGTGAGG                CCGG CCGGC CCGG                TTATCCACGCGATCG  52 441
   Rru_A1813 2110580 .. 2110614 +  -7.1  -2.82015   CACCCCGCCCTGGCC    GCGAATAACCAGCAGG CAAC CCTGC-GGTGGATCGC     TGTCCTCCATGTCGA  50 506
   Rru_A1815 NONE
   Rru_A1816 2113795 .. 2113812 +  -2.6  -4.45945   GCGGATCGGCATAGG             GGCGAC TCACTT GTCGCG              TTTTACTTCGTGCGT  66 59
   Rru_A1829 2128088 .. 2128112 +  -8.5  -5.10933   GGCGCGCGCGCCCTA          CCCTCCCGG CATCGGC CCTGGAGGG          TTTTCTTTTGCCTGA  93 169
   Rru_A1836 NONE
   Rru_A1837 2135687 .. 2135731 +   -15   -4.5442   CGCGCTGATTTTCGA G-AGCGATGGGGGACGGGGCG GAAC CGCCTTATCCCCCATCGCGGC TTTTCTGGTTAACGG 100 33
   Rru_A1840 2140317 .. 2140351 +  -9.2  -2.78463   TCTCATCCTCGAACC    GGT-GGGCGACCGCT AAAGAG GGCGGCCGCCCCGCC     TGTGGTCAGACGGGT  57 10
   Rru_A1842 NONE
   Rru_A1843 NONE
   Rru_A1844 NONE
   Rru_A1845 2144388 .. 2144404 +  -4.3  -2.77503   GCCCGGGCTGATCCT              TCGGGCG CGC CGGCTGA              TCCTTGGGTGATTGT  43 30
   Rru_A1846 2145589 .. 2145607 +  -3.7  -3.07816   GGGCGTTGGGCGGAT             CGACTGG CAGGC CCGGACG             TTGGATCGGTCCCGA  43 61
   Rru_A1847 2146615 .. 2146648 +  -5.8  -3.65351   GGCAGTCGTCCCAGG     CCGGCCCGGTCGCC CAACCA GGCGGTCAGGTCGC      TTTCGGTGCGCGTCC  57 86
   Rru_A1859 NONE
   Rru_A1860 2158817 .. 2158850 +  -4.5  -3.91911   GGATATTGAAGCAAA     TCGTCGTCGCGGTCTG GTT CAGATCGCT-CGGAGA     TTTGCTTCAAATCGG  59 86
   Rru_A1861 NONE
   Rru_A1862 2160589 .. 2160601 +  -6.2  -3.24924   GGATGGGCGCGGGCG                CCGC TCACC GCGG                TCTTGTCGGTCAGCG  53 286
   Rru_A1866 2164783 .. 2164816 +  -6.6  -3.53012   CAGACGGGCCCTGGC     GCGACGGTCCTGAA ATTTGC TTCAGGCACGCCGC      TTTACGGGGAGAGGC  58 51
   Rru_A1869 NONE
   Rru_A1870 2168359 .. 2168372 +  -8.1  -3.25719   ACGCCCGTTCCGCTC               GGCGA AGGG TCGCC                TTGATCCTCTCGTCC  57 156
   Rru_A1871 2170043 .. 2170056 +  -3.7  -2.66316   CGAAACGGGCGAGCT               GCAGG TCAG CCGGC                TGGTGTCATGACCGG  40 1
   Rru_A1872 2170736 .. 2170786 +  -3.2  -3.12351   GGGCGGCGCTGATTG GGCGGCCTGATCGGCCTAACGTGA TCGGC TTACGCC-G-CCGCTCAGCCCGCC TTGCCTGTCGGAAGG  43 16
   Rru_A1875 2173697 .. 2173713 +  -2.9  -3.01712   GGCGCGATCAGGGCC              GCTTGGC GCC GTAAAGC              TGTTCGGCGCGGCGC  41 12
   Rru_A1883 NONE
   Rru_A1884 2183543 .. 2183573 +  -6.6  -5.26316   CGTCGACGGATAAAA       AAGGCCGCCATCCC AAG GGAACGGCGGCCCG       TTTTTTGTCCAATCA  93 28
   Rru_A1890 2191266 .. 2191297 + -22.4  -4.19238   ACGAACTGATCACCG      CCCGCGCCAAAGGG GGTG CCTTTTGGCGCGGG       TTTTCGCCTTCCAAG 100 32
   Rru_A1891 2192963 .. 2192983 +  -8.1  -3.05596   GCCCAGGTAATCGAA            GCCGGCGCC ATC GACGGCGGC            TTCGATCGCCGCGTC  53 103
   Rru_A1895 NONE
        trpD NONE
   Rru_A1897 2199694 .. 2199714 +  -2.5  -4.02817   ACCAAAGTAGAACTT            CCAGGCG GTATTCA CGTTTGG            TTCTTCTTGTCGCCC  57 161
   Rru_A1898 2200572 .. 2200598 +   -18  -4.11216   TCTTCGCAAAAAAAA         GATCCCCGCCGC TCG GCGCCGGGGATC         TTTTGGCGATCAGGC 100 51
   Rru_A1900 2202345 .. 2202392 + -19.8  -3.59979   CGCCGGCCTTTTCCT GGGCGGTG-GCGGCGACCGAGCG CAC CGCTTGGGCGCTGCTCGCCGCCG TTTGCGCTCCCCCGG 100 186
   Rru_A1906 NONE
   Rru_A1907 2211912 .. 2211950 + -12.4  -3.66784   AAAAGCGGCTCTCTC   CCAGGGCGTCGGTCCC CCTTTCA GGGGCTGACGTCCTGA   TTGTCTTCAGAGTCA  82 49
   Rru_A1909 2214600 .. 2214631 + -13.6  -2.57463   AGCGTCGTTTTTCAA      AAGCGCCCCCCGTC CCGC GATGGGGGGCGCGG       CTTATGAGCACGGTT  72 58
   Rru_A1910 2216157 .. 2216189 +  -6.9  -2.79302   CCAGGAAGCCGGCGG     C-CTGGGCGGCGGC ATCAAG GGCGCGGCCCAGCG      TGTCGTCACACTCCT  48 131
   Rru_A1912 2217682 .. 2217694 +  -4.8  -3.29144   CTCGCGCTCCTCGAC                GACC TTGCC GGTC                TTGTCGCGGGCCTGC  49 158
   Rru_A1914 2219169 .. 2219184 +    -9  -3.89346   CCGTTCTCTGGCAGA              TCGGTC CATT GACCGA               TTTGTCCCATGAGAA  73 104
   Rru_A1915 2220433 .. 2220466 + -27.5    -5.055   AACTAGGCATCCGAA     GCGGGGCGCCCTCCT TGAC GGGAGGGCGCCCCGC      TTTTTTGACGATTCC 100 58
   Rru_A1916 2221034 .. 2221066 + -14.9  -3.53444   CGGATGTGAAAGGCC     GC-TGCGGGCGCCC GCCTTG GGGCGCCCGTACGC      TTTGGCGGGGCATCG  90 45
   Rru_A1917 2222839 .. 2222863 + -18.6  -4.87892   AGTAAGACCCGAAGC          CTCCGGCCGG CATCC CCGGCCGGAG          TTTCTTTTGTTCAGG 100 36
   Rru_A1918 NONE
   Rru_A1919 NONE
   Rru_A1920 NONE
   Rru_A1921 2226677 .. 2226706 + -16.5  -3.24924   AGATGAAGCCGGGAA       CCC-CGCTCATGCC GAT GGCATGGGCGCGGG       TGTTCTCGCTGACCA  82 216
   Rru_A1923 NONE
   Rru_A1924 2229336 .. 2229347 +  -5.8  -2.78384   CCTTTAGCAAGCCGA                TCCC CGCC GGGA                 TGTCGTCAACCGAGA  45 54
   Rru_A1926 2231592 .. 2231604 +  -6.2  -3.91897   CATGCCGGAAGGCCC                CGCC GACAA GGCG                TTTGTCAGTCGGCGG  62 60
   Rru_A1928 2235509 .. 2235546 + -16.3  -3.14132   GATCAAGATCTGAGA   GCGGCGGACCCACCTTCC ACG GGAAGC-GGGTCCGCCGG   TTCGTCAGCAGCCGC  85 107
   Rru_A1934 2241768 .. 2241820 + -12.7  -3.04322   CCAGGGCGCGGGCCA CCGCCTGGGCGGTGGTGC-GCGCCA TAAGC TTGCGCCGCGCCGCC-CCCAGATGG TGTTCGGCCGTTCGA  67 229
   Rru_A1938 NONE
   Rru_A1939 2247531 .. 2247576 +  -5.2  -3.51924   GGCGCGCGAGGCCGG GGGGCGCC-CCAGGGTCTGGC AAAGC GCCAGACCGGCGAGGCGCAGC TTCTCTAGATCGACG  54 76
   Rru_A1949 NONE
   Rru_A1950 2260123 .. 2260146 +  -3.6  -3.63991   CGCTCTACGAAATAC          TGCGCGGGCG TACT CCCCAGCGCC           TTCTTGAACATCGTG  54 218
   Rru_A1952 NONE
   Rru_A1953 NONE
   Rru_A1954 2264249 .. 2264259 +  -2.4  -3.63367   AAAGCCTCGGGAAAA                 CGCC CAT GCCG                 ATTTTTGTTAAAAAA  49 93
   Rru_A1955 NONE
   Rru_A1956 NONE
   Rru_A1957 NONE
   Rru_A1958 NONE
   Rru_A1959 2268290 .. 2268307 +  -3.4  -3.27525   CGCGGGATCGCGCAG             TGCCGT CATCGC ACGGTA              TTCAGTTTCAACCGA  47 72
   Rru_A1961 2269700 .. 2269752 +  -8.4  -2.87931   TGGGACTCCTGAACG GTCGCGACAAAGGCTGATCTG-TCCC ACA GGGAACAGAGCGGCCCCT-TCGCGCC TCTATACGGAATACG  55 9
   Rru_A1962 2270160 .. 2270178 +  -4.4  -2.59564   CAGCGGGTCATCAAG             CCCGGCCA GGG TGTCGGGG             GTTATCGCCTGGGGC  42 113
   Rru_A1965 2272782 .. 2272796 +  -4.2  -3.59979   CGCCGGCGAAGCCAC               CGGG GAAAGCG CCCG               TTTCCGCTAAGCCCC  54 1
   Rru_A1966 2274396 .. 2274417 +  -4.3  -4.58283   CCGCCCTCGGGAGAC           GCTGCGATG GCCC CATCCCTGC            TTTTTGAAGCCGTTC  73 61
   Rru_A1967 NONE
   Rru_A1968 NONE
   Rru_A1969 NONE
   Rru_A1973 2284216 .. 2284227 +  -4.4  -3.42605   AAAGGATCATAACTT                GTCA TATA TGAC                 TATATTTTGAGTGCC  52 239
   Rru_A1980 2293157 .. 2293187 +  -4.5  -3.72695   GGCGCGCCGCGCCGC      GCC-GCCAGGGCGG TCCA CGGCCCCGACAGGC       TTTCATCGAAGGGCT  55 475
   Rru_A1984 NONE
   Rru_A1985 2295904 .. 2295918 +  -3.5  -3.14132   TGATGCTCGATCCAG               TCCCG TGTCT TGGGA               TTGATCCACCCGACG  45 229
        lipB NONE
   Rru_A1997 2307759 .. 2307784 +  -8.9  -2.63585   CGCGCCCCGACACGA         CGGTTGACCGG GCGG CCGTTCACCCG          ATATTTCCCATCTGG  56 19
   Rru_A1998 2309071 .. 2309090 +    -2  -3.70902   GCTAGAAAAAGGTCA            GCGTTTTG ACCT CAACTCGC             TTTCCATATACGCCC  52 98
   Rru_A2000 2310631 .. 2310651 +  -6.1  -3.02144   CGGGCGAGCGGATGG            CCTGGGT ATAGGTC ACCCGGG            TATTGCCAAGGGTCA  49 253
   Rru_A2002 2312900 .. 2312933 +  -2.4  -3.76224   CAGGACGGGGCGCCG    CGCGTC-GGGTCATAG GGGC CT-TGGCCCTGGCGGG     TTTGCTGGGTAAGGA  54 119
   Rru_A2005 NONE
   Rru_A2006 2318643 .. 2318671 +  -8.8  -5.12617   ATGTCACCATCGGCG        CCCCCCCTGTTC AAGAC GGATAGGGGGGC        TTTTTTGGGTCATTC 100 102
   Rru_A2008 NONE
   Rru_A2009 2323567 .. 2323579 + -10.5  -3.53012   ATGCCGTCGATCACG                GCGCG AAC CGCGC                TTTCGCCCGCCGGCC  70 52
   Rru_A2015 NONE
   Rru_A2016 2331690 .. 2331715 + -18.3  -4.00532   ATACAGTGTGAAGAG         CCTCGCCCGGT TTAC GCCGGGCGAGG          TTTACTATTTGGGCC 100 194
   Rru_A2018 2332564 .. 2332608 +  -9.4  -2.73364   TATTCCTACGGGTAG CTTTCCGACATGCCATTGC GGGAGGGA GCAC-GGCATGTCGGATAG TGGTTACGATGCGGC  57 78
   Rru_A2022 2335114 .. 2335149 +  -7.3  -3.86897   CCCCTAACCCCCGAC    CCCGGTCGCGGCGGC CTCGCC GCCGCCGCTCCCGCC     TTTCTCCAGAGTGCG  65 243
   Rru_A2023 2337864 .. 2337886 + -10.4  -3.40403   TGGCGCCGATCCAGC           CGCCGCCCAG CAC CCGGGCGTCG           TTGTCGTCAAGGCCG  68 70
   Rru_A2030 2344016 .. 2344042 +  -5.9  -3.53224   GCCACCCCACGCCGA        CG-CCTCATCCA ATCG TCGATGAGGGCG         TTTCCCGGACCGGTG  56 491
   Rru_A2032 2346035 .. 2346045 +  -2.4  -4.13014   ATGTAGACTTTCGGT                 CGCG TTT CGGG                 TTTTCCCGCTATGGA  57 75
   Rru_A2033 2348657 .. 2348692 +  -2.5  -4.97312   CGGTCCCGGAGCGAC   GGTC-TCGACGACGGGG TAAT CCTCGGCG-CGATGACA    TTTTTACTTCATTTT  75 7
   Rru_A2034 NONE
   Rru_A2035 2351726 .. 2351746 +  -8.2  -2.79302   CTTATCCGCCGGTGC            CGCCGACC TTCTC GGTCGCCG            TCTGGTCGGGCTGGT  53 461
   Rru_A2038 NONE
   Rru_A2042 2363430 .. 2363443 +  -3.7  -2.70932   CCTGGTCCCGATCAT               CTCGG CCAG CCGCG                TCGTTCCCACGGGCG  41 449
   Rru_A2050 NONE
   Rru_A2051 NONE
   Rru_A2052 2376097 .. 2376146 +  -9.4  -3.34894   CTAACCCCCGAAACT CCCTC-CCCTCACGAAGATCGCCGA ACC TTGGTGTTC--CGTGGGGGCGAGGG TCTTTCCCCCGGCTT  63 37
   Rru_A2053 NONE
   Rru_A2055 NONE
   Rru_A2056 NONE
   Rru_A2057 2379654 .. 2379666 + -10.5  -4.21319   CGCCCCGAACTCGGG                GGCCG GTG CGGCC                TTTGTTGGACTTGCT  84 87
   Rru_A2058 NONE
   Rru_A2059 2382401 .. 2382418 +  -2.7  -4.13767   AAAGCGGTTACGGAA             GCCTT TGACGTGC AAGGC              TTTTCCCGTGGGGAA  59 483
   Rru_A2063 NONE
   Rru_A2064 NONE
   Rru_A2065 NONE
   Rru_A2066 2390640 .. 2390663 +  -9.5  -3.54129   CCTGCCCCTTATTCC          GCCGCTGCC GCGACG GGAAGCGGC           TTTCCGCGCGCTCTG  66 90
        mgsA 2392685 .. 2392708 +  -2.4  -4.07526   TACGCCAACCGCAAG          GTCTAGGG GGGAAAGG CCCTAAAC           TTTCTATGAGTACTT  57 20
   Rru_A2070 NONE
   Rru_A2071 2397469 .. 2397485 +  -8.7  -3.35996   GATCAAGCTTGATGT              GCAGTTC TTT GAGCTGC              TTGTCGCTGACCGTA  60 177
   Rru_A2073 2400538 .. 2400590 + -29.3  -3.21099   CCGGCCGCCTTTCGC GGCCTGAGAGCGGTGAGCGGGGAAC TCT GGTTCCCGCTCACCGCTCTCAGATC TTGATGGTCAAGCAA 100 64
   Rru_A2075 2403677 .. 2403718 + -23.2  -2.62184   GTGACTCCTCAGCCA TGAGGGGGAAGGGGAAAG TCTTCT CGTTCCCCTTCCCCCTCA  TGGTATACCAGAAAA 100 37
   Rru_A2076 2405978 .. 2406016 +  -7.4  -4.89567   AAACAAGACAAGGCA   TTCCCCTGGTGGGCGA CATCCCT TCGTCCACTAGGGTCA   TTTTATCTTTTAAAA  88 382
   Rru_A2078 2408226 .. 2408263 +  -5.3  -4.07568   CCAATGAGGCGGCGA   TCGCCAGATAGGGGTTG GCAT CGGCCCCCGACAGGCGG    TTTTCAACCCGGCGG  64 357
   Rru_A2080 NONE
   Rru_A2081 NONE
   Rru_A2082 2411231 .. 2411280 + -19.5  -3.21099   CGCGTCGCCAAGACG GC-C-GAAAGCGGCGAGCGGGAA ATCCGG TTCCCGCTCGCCGCTCTCAGAGC TTGATCGTCACGCAA  91 58
   Rru_A2085 2414103 .. 2414136 + -12.3  -2.78679   TTCGGGCCGGTTCGC     CGGCGGTTCGGAGCG AATA CGAACCGGATCGCCG      CTTTCAGTCAGGCAG  69 88
   Rru_A2086 2415651 .. 2415685 + -21.6   -4.9218   CCCGACCTTTTTTGA     TAAAGCCCCGTCGGCA GCC TGTCGGCGGGGCTTTA     TTTTTGTCATCGATC 100 91
   Rru_A2087 2416775 .. 2416789 +  -2.7   -2.6063   GCCCCCGCGCTCCGA               CGGAG ACTGA CCCCG               TGAATTATACCTGGA  38 121
   Rru_A2088 NONE
   Rru_A2089 NONE
   Rru_A2090 2419021 .. 2419054 + -20.4  -5.47431   GAACCGATTACCACG     CGGGCGCC-AAGGGG ATACC CCCCTTCGGCGCCCG     TTTTTTATGTCTTCA 100 79
   Rru_A2091 2419491 .. 2419510 +   -15  -3.53444   GGCTGACGCGGATAA            GGCCGGAC CCCC GTCCGGCC             TTTCCCCCACGCTCA  90 35
   Rru_A2092 2419983 .. 2420030 + -14.6  -3.01712   CCGGCGGGTTTTATA GGGAGCGGCGGGCGGAGACCGG GATG CCGGGGTCCGCCCGCTTACCCC TGTTCAGCCACCGCA  80 48
   Rru_A2093 2421000 .. 2421015 +    -6  -3.53012   TATTCCGCCGGCTTG              CCCGCG CCCT CGGGGG               TTTCGGCCAGGGCGC  55 52
   Rru_A2107 2443525 .. 2443541 +  -5.8  -4.56597   GGGGATTTGCTTTAC             CG-GGCC TCGC GGCCGCG              TTTTTCGCCCGGGGC  74 138
   Rru_A2113 2453208 .. 2453218 +  -6.8  -3.35996   CGCAGAGCACCCAGC                 CCTG CCA CAGG                 TTATAGGTGCCCATG  56 131
   Rru_A2120 NONE
   Rru_A2121 2464272 .. 2464286 +  -4.9  -2.62184   CCAAAACCCAGGCGA               CGGCG AAGAG CGTCG               TGGTCTGGGCCAGCG  43 139
   Rru_A2127 2470612 .. 2470628 +  -2.1  -3.14132   CGCCGCCCCGCCGCC              GAGTAGG CGG CCCACCC              TTCGTCCGCCCCCGC  43 20
   Rru_A2128 2471557 .. 2471567 +  -4.6  -2.60496   CCTTGGCCCAATCTG                 CGGG TTT CCTG                 ATCTTTCCCCGGCCG  43 14
        fumC NONE
   Rru_A2130 2473900 .. 2473916 +    -5  -3.16564   TGAATTTACCTGAAA              CCAGCC ATTGA GGCAGG              TTACTCGCCTCCGCA  48 114
   Rru_A2140 2484791 .. 2484827 + -11.4  -2.71924   GGGGGTAAGGGCCCC   CGCCGCGCCACGACGGC GATC GCCGAGG-GCCGCGGCG    CTTTCAACGGCGATG  65 40
   Rru_A2142 2487814 .. 2487850 +  -4.5  -3.54741   GGGTATATCGGGCGT   GACGTTCGGGCGCCGAG GTCAG TTCGGCGC--GAACCTC   TTTGGCGAAGTCATC  52 172
   Rru_A2145 NONE
   Rru_A2146 2491046 .. 2491096 +  -7.6  -3.12351   GCCCGCCAAAGGAGC GGTCTGAGAGCGGGAGGCGTAAA ATCGGG TTCACGCCCCCCGCTCTAA-ACG TTCACTCTCGGGGCG  56 46
   Rru_A2149 2498870 .. 2498895 + -20.5   -4.4078   TCACCCGATGACGGA         GGGGGACCGGA GCAA TCCGGTCCCCC          TTTTAGTTGACGGCC 100 63
   Rru_A2150 2499451 .. 2499468 + -14.1  -4.19258   CCCCCCATGCAAAAA             GGCCCGC TTGC GCGGGCC              TTTTCGCTGCGATCT 100 63
   Rru_A2156 NONE
   Rru_A2157 2505526 .. 2505552 +  -5.8  -4.56597   AATATTGCCGCCGCA        GGCGCCGATCG CCCGCT CGA-CGGCGCG         TTTTTCCACAACCCA  74 162
   Rru_A2159 2507950 .. 2507963 +  -2.3  -4.57341   TTGGGCTCCAGTCCC               ATGGC GCGC GCCAG                TTTTTCCAGGCGCTT  67 101
   Rru_A2162 2512675 .. 2512702 +  -4.1  -3.53091   CGCGCCGGCGGCGAC       AGGGCGG-TCAGC AGCA GC-GATCCGCCCC        TTTGGCGGGCGGCGT  51 310
   Rru_A2167 NONE
   Rru_A2168 2518119 .. 2518138 + -16.4  -3.57144   CGGCCCAAAACAAAA            CCCGCCCC TTTC GGGGCGGG             TTTCGCAGTGACACA  93 48
   Rru_A2170 2521047 .. 2521066 +  -2.8  -4.57341   GTAATTAGATAAGCG            TACACG-GC CCG GCTCGCGTA            TTTTTCGGAACGATT  66 117
   Rru_A2171 2522338 .. 2522365 + -17.7   -4.9138   TTACGGTCACAGAAA        GGCCCCGTCGG CGCGAT CCGGCGGGGCC         TTTTCTTTAACTGGT 100 54
   Rru_A2179 2531815 .. 2531827 +  -5.5  -2.79492   GACCGCGCCGATGGC                CCCTA GGC TGGGG                ATTTCCAGTTCCAAG  46 64
   Rru_A2180 2532799 .. 2532824 + -21.9  -4.77438   GCCTAATCGCGCAAA         GGGCGGGACCG CTGC CGGTCCCGCCC          TTTTTCGTAATCAAT 100 59
   Rru_A2186 2541605 .. 2541615 +  -2.6  -4.62708   TATCTATAATATATA                 TTAT ATC ATAA                 TTGTTTTTATGTCTT  70 285
   Rru_A2192 2547889 .. 2547932 + -11.8  -3.12847   AGCCCCCTCCCTAAA GCAAATCCCCG-AGCGATCTG GAC CAGATCGCGACGACGATTTGC TTCGATATCAGCATT  69 40
   Rru_A2193 NONE
   Rru_A2194 2549897 .. 2549947 +   -14  -4.54343   GTGGTGGTCTTCCGC CGGCCTTAGGGTCTGTCCGCTTGA TGC TGAAGCGGACAGACCCTGGATCCC TTTGTTTGAGTTTGT 100 17
   Rru_A2197 2552177 .. 2552226 + -21.6  -2.52516   GCGCCGCCGCCGGTT TTCCTAGAGCGGTGAGCGGGGA CTAGAT TTCACGCTCACCGCTCTAGGAC CTTGATAGTCAAGCA 100 81
   Rru_A2204 2561004 .. 2561022 + -13.1  -4.86731   CCCACTTCCCTACAA             GGCGGCC CGACA GGCCGCC             TTTTGTTTGAACGGC 100 408
   Rru_A2205 2561908 .. 2561930 +  -3.3  -3.05844   GGCCCATGACCATAA          GCC-CCCCTC GCCC GGGGGACGGC           TGTTGAAATGACCGA  43 217
   Rru_A2206 2563588 .. 2563599 +  -3.6  -2.78715   CAGCAGCTTTGAGAC                TGCG ATTG CGCG                 TCTCCTCCCCCGGTT  41 29
   Rru_A2207 2564069 .. 2564082 +  -4.5  -3.61398   CGCCCTGCAACCTTT               CGGGT GCTC ATCCG                TTCTTGGAAGACGGA  54 70
   Rru_A2208 2564482 .. 2564520 + -10.8  -3.53224   GCCGATAACGCTCGC   GCCCGGGCTCACGTCGTC CCT GTCGGCTTGAGCACGCGC   TTTGCCCCCGCCCTC  70 50
   Rru_A2216 NONE
   Rru_A2217 2576636 .. 2576653 +  -2.6  -2.79823   CATAGGTAGTCCGAT             CGTTGC GAAAAG GCATCG              GTTCGTTTTGGGCCA  39 65
   Rru_A2218 NONE
   Rru_A2219 2578144 .. 2578154 +  -2.4  -3.15354   AGCGGTTCAATCCGC                 TGCC CTA GGCC                 TGTTCCCTTAAAGTC  43 18
        uvrC NONE
   Rru_A2221 NONE
   Rru_A2222 2582500 .. 2582512 + -10.5   -3.4252   GGCCGCCGAAGCGGA                GGCGG AGG CCGCC                TTGTCGTGGGTCCGC  70 91
   Rru_A2224 NONE
   Rru_A2225 2584893 .. 2584905 +  -2.6  -3.55444   TGACACGCCCCTCGC                GGTG AAGGG CGCC                TTTCGCGCCTCGGCA  47 38
   Rru_A2226 2586429 .. 2586441 +  -3.3  -4.56729   CGTCCACCTTTTAGC                CGGGT TTG ACCCC                TTTTACTCTTTTACT  68 111
   Rru_A2227 2587091 .. 2587110 + -11.4  -2.57211   CGGTCGCGGCCGCGC            GCCTTGGC CTCG GCCAGGGC             CTTGTCGGCGGCGGT  61 92
   Rru_A2230 2590927 .. 2590940 +  -2.4  -3.03124   ACGGAAGATCGTTGG               CGAT CTGGCA ATCG                TCTTCAAGGATCAGC  41 489
   Rru_A2233 2593345 .. 2593392 + -18.5   -3.7941   GGTTCTCAAGATGTT AGAGCGGCGAGTGGAAAAGCC AATTCC GGTTTTTCCGCTCGCCGCCCG TTCTTATCGGCCGTC 100 156
   Rru_A2236 2597876 .. 2597890 +  -5.6  -2.52635   CATCGGCGGCGTGAA               CTGGCC GAC GGCGAG               GTTCATCGTCACCAT  44 256
        glgC 2609494 .. 2609510 +  -2.1  -5.82388   ACCATCTTTCGCATG              GTAGCGG TTA CGGCGAC              TTTTTTTTAAGCTTT 100 113
   Rru_A2250 NONE
   Rru_A2251 2614401 .. 2614420 +  -2.7  -2.78596   ACCTTTCGGGGGGCG            CTCCCCG GGAAGA CGGTGGG             TGTGATCCGGGCGTA  39 56
   Rru_A2252 NONE
   Rru_A2253 NONE
   Rru_A2254 2616503 .. 2616513 +  -4.6  -4.07568   GTTTGTCAGGGAAAA                 GTGG GCA CCGC                 TTTTCCCGAAAAGAC  61 42
   Rru_A2256 2618105 .. 2618123 + -14.6  -5.14563   CGCATCGGTTGATAA             GGGGGAAG GAT CTTCCCCC             TTTTTTCATGGGGCG 100 155
   Rru_A2257 2619279 .. 2619327 + -12.4  -3.54459   CGTTCCATCTTGGTC GCGGCCTTCATG-CCCCGGCGAA CCCC TTCGCCGGCTTCATGCAGACCGC TTTCCACGGCGTTGC  74 117
   Rru_A2261 2622067 .. 2622085 +  -2.3  -3.58914   TTGATCAGATGCAGG             GGCCCGT CCGTC ATGTGCC             TTGTCCTTCGTTTGG  48 463
   Rru_A2272 2632498 .. 2632509 +  -5.8  -3.88291   CTGGCCACCGCTCAT                CTGC TGCG GCAG                 TTTATCGGCATCCTC  60 461
   Rru_A2278 2639409 .. 2639438 +  -4.9  -3.53444   ACTGAAGCCACTAAC       GACGCGCGGAT GCGGACAG ATCCGCTCGCC        TTCCTTCTTAAACGA  52 451
   Rru_A2289 NONE
   Rru_A2290 2650150 .. 2650172 +    -7  -3.56643   GTATACTCGCAAGGC           GTTAAAAGGG GAT CCCTTTAAGC           TTTGCGAGGTCTGCG  60 112
   Rru_A2291 2652366 .. 2652414 +  -7.7  -3.59979   TGAAAGAGCGATCAC CACAGCCGCCCCCTCACCCGCCC TCG GGGCCGGGGGGGAGGAGGACGGG TTTGCCGTCGGGGGG  64 38
   Rru_A2294 NONE
   Rru_A2295 NONE
   Rru_A2296 2658283 .. 2658329 + -11.5  -4.24948   TGCGGGTGATCGAAT CGGCGGCATAGCGCACCGCCTT GCGC AGGGCGGCG-GCGATATCGCCG TTTTGCGTATAGTAA  91 163
   Rru_A2304 NONE
   Rru_A2305 2667813 .. 2667825 +  -6.2  -4.63179   AAAGGGATTTTAAAA                GGGG TCCGC CCCC                TTTTCCTTCTTCTTT  76 80
   Rru_A2309 2673856 .. 2673891 +  -3.2  -3.31726   AGTTGCCCGGCGCCT    GAGGGC-GGGCGGTT CCGGGAA AACCGCCTAGCCGAC    TGTTCTGTAAGGGAC  47 24
   Rru_A2310 2674762 .. 2674775 +  -5.9  -3.55444   AAGATGGCCGGTCAA               CTCGG CGCC CCGGG                TTTGCCGGATCCGCG  56 266
   Rru_A2312 2677802 .. 2677859 +  -2.3  -3.74693   CCCTTGGCCATCGCG CCGAGGCCAAAACCGGTCGCCGTCGGCC CCA GGCCGGCG-CGACCGGTGGCGCCGAAGA TTTACTCCAGTCGCA  52 53
   Rru_A2313 NONE
   Rru_A2314 NONE
   Rru_A2315 2680316 .. 2680339 +  -9.6  -3.34398   CTCATCGACGATCAG          GCCTTTCC-CC AGC GGCGGGAAGGC          TCTTTGCGGGCAAGC  61 154
   Rru_A2317 NONE
   Rru_A2318 NONE
   Rru_A2319 NONE
   Rru_A2320 2689378 .. 2689430 +    -6  -3.35371   GGATAGCGCGCGCCC GATCCGCTCAGGGACCGGCCCGGT CTCTC ACCCTCCCCGCCCCTCCGCGGATC TTGCTTCCGCCTCTC  52 201
   Rru_A2321 NONE
   Rru_A2322 2693572 .. 2693587 +  -4.6  -4.62069   GTTACAGCGGGAAAA              TCGCCG ACAC CGGCTA               TTTTTCCGCTCGCCC  73 100
   Rru_A2323 2694801 .. 2694811 +  -3.2  -3.53012   CGCCACCTCACTGAT                 TTGC TCA GCGA                 TTTGGCGGCGCCGGC  49 78
   Rru_A2324 2695341 .. 2695351 +  -2.4  -2.76696   ATCCGCCGGATACGG                 GGCC AAT GACC                 GTTATTCGCCCCCCA  39 17
   Rru_A2325 NONE
   Rru_A2326 NONE
   Rru_A2327 NONE
   Rru_A2328 2699437 .. 2699459 +  -4.6  -3.25491   GCGCCGGCGCTGAAA           GCGGACGGGC GAT GACCGCCCCC           TTCGTCCTCTCCGTT  48 11
   Rru_A2329 NONE
   Rru_A2330 NONE
   Rru_A2331 2701327 .. 2701350 +  -4.5   -2.8474   GAGTTGTTCACCGAC          GGAGCGCCGC CATGA GCG-CGATCC          TGATTGTCGATGACG  45 11
   Rru_A2332 NONE
   Rru_A2333 2703544 .. 2703554 +  -6.8  -4.26622   GCGTACCGAACCGGG                 CGAG ATA CTCG                 TTTTCGATCTCCTTT  72 370
   Rru_A2335 2705189 .. 2705220 +    -8  -3.54424   ACGGCTGAAACAGGA      TCGATCCTGCC-GAT AAG GTCTGGCGGGAGCGA      TTTCAGAAACTCGGC  62 33
   Rru_A2341 NONE
   Rru_A2342 2715872 .. 2715899 +  -2.7  -5.40474   CGCCCCTCGAATGGC        CGGCTTGAGGA CAGCCC TTTTCAAGCCA         TTTTTTTCGACCCCT  85 62
   Rru_A2343 2717637 .. 2717663 + -13.7  -2.64155   GGGGAACGGGGTACG        GCC-GCTCCGGC TTCG GCCGGGGCCGGC         TCAGTTTCAGCCGCA  72 98
   Rru_A2348 2727763 .. 2727790 +  -3.2  -2.73243   CGAGGCCGTTCTGGG        GAGGGGGATCGG ATGA TCGAGCCGCCGC         ATTTGACCCATCCCT  41 10
   Rru_A2349 2728901 .. 2728923 +  -7.6  -3.14132   TGGCGGGGCGAAAAC           CGCGCCGG CTGAAGC CCGCCGCG           TTCATCACCAAAGGA  54 288
   Rru_A2351 2731684 .. 2731712 + -13.9  -3.35278   TCGACAAAACAAAAA        GCCGCTGATTCCG GTC TGGAATCAACGGC        TTGATATCTGGTTGC  81 438
   Rru_A2354 2741886 .. 2741919 +  -8.9  -3.57144   CTTCTCCTTGATCAT    GG-CGCCGCTCTCCG GTTCCG CGGGGA-CGGCGGCC     TTTGACGGTAACCCC  68 308
   Rru_A2356 2743898 .. 2743922 + -21.5  -4.93365   AGCCGACAAAGCCGG          CGGGGGAAGGC GAT GCCTTCCCCCG          TTTTTCATTGTGCGG 100 39
   Rru_A2357 NONE
   Rru_A2358 NONE
   Rru_A2359 NONE
        dppF 2748334 .. 2748352 +  -6.7  -3.58564   CTGGCCAGGGCGACG            GCGCC-CA TCGA TGCGGCGC             TTCCTTTGATCGTAT  58 235
   Rru_A2365 2757471 .. 2757490 +  -4.2  -3.53012   GTCAGTAGGGGTTTT            TCGGGC AAAGCCAA GCCCGG             TTTGAAGCAGGGGGG  52 33
   Rru_A2366 2759335 .. 2759378 + -10.3  -4.05033   TGCACCGGTTTTAGG CC-CTTGGGCAGGACGACCGC CGCC GCGGACGTCCT-CCCAGCCGG TTTCTCTGGCATCAC  80 64
   Rru_A2367 NONE
   Rru_A2368 2760979 .. 2760995 +  -7.2  -3.53012   GCGCCTCCAGCCCGG              GGGCGG CGGTC TCGCCC              TTTCCCACCGCCAGC  58 261
   Rru_A2370 NONE
   Rru_A2371 2764395 .. 2764414 +  -3.4   -3.5627   CCCCGCCCCCGCCGG            GGTGACGG GTTG CCATCCCC             TTTCCCAGATGCTAT  51 65
   Rru_A2372 NONE
   Rru_A2373 2766086 .. 2766100 +  -6.4  -3.93868   CGGGCGTGGTGATTT               TGCGAT AGA GTCGCA               TCTTTATTTTCCGAC  65 18
   Rru_A2374 2768650 .. 2768668 +  -4.4  -3.30124   AGGACGCGAGGTCGT             CGGGTCGC TGC GCTACCGG             TTCTAAGCGATGGCG  49 1
   Rru_A2375 2769092 .. 2769102 +  -6.8  -3.79747   CCCTTAAAGCTGGTC                 CCCA CTC TGGG                 TTTACTCCTCCATCA  63 113
   Rru_A2398 2792949 .. 2792977 +   -21  -5.31275   GCCGCTTCGCCGATG        GCCCCGCCCCCT GTCCG GGGGGGCGGGGC        TTTTTTGTGGTAACC 100 58
   Rru_A2399 2794435 .. 2794460 + -16.2  -3.60151   AAAAGCTCAAAAAAA         GACGCGGAGG GGAGAG CCTCCGCGTC          TTCTGCTTTGACCGG  93 71
   Rru_A2402 NONE
   Rru_A2403 NONE
   Rru_A2404 2799904 .. 2799923 +  -9.2  -2.62184   AAGCGGGCCCGCGCC            CTCGGGCG CTGA CGCCCAAG             TCCTGTCAAGAAAAC  56 14
   Rru_A2405 2802104 .. 2802135 +  -5.6  -6.06723   GACCCACCGCAACCT      TACCCCCCCAGGCC TCTC GCCCAGGGGGGTTC       TTTTTTTTTAAAAAA 100 104
   Rru_A2406 NONE
   Rru_A2407 2807055 .. 2807065 +  -2.4  -2.74144   CATGGGCGGTGAGCA                 GGGC GTG GCCG                 ATTTCGGAATCGGCG  38 157
   Rru_A2413 2816039 .. 2816069 + -18.3  -5.06414   ATGAGTCACACTCGG       CGCCCGGATGGCT GACAA GGCCGTCCGGGCG       TTTTTCTTAAACGGG 100 70
   Rru_A2414 2816510 .. 2816531 +  -4.4  -3.24422   ATAGTTACGATCTAT           CGG-GCGCA TGGCC TGCGCATCG           TCATTTTTAGCGATG  48 113
   Rru_A2415 NONE
   Rru_A2416 2817107 .. 2817130 + -12.4  -5.83822   CCGTTGATAGCAAAA          GGCCCCCG AAGATCCC CGGGGGCC           TTTTTTTTCAGTATC 100 34
   Rru_A2422 2822678 .. 2822713 + -10.5  -2.78935   GGCAGTAGCACCGCC    AGCCTGGAATATCGT CCTAGA ACGCTATTCCAGGCC     TCTCCTCCCCCCTAT  61 33
   Rru_A2425 2826679 .. 2826691 +  -3.3  -3.14998   CCCTGTCATCGCGAG                GAACC CCA GGATC                GTTTGTTCGTCCGTC  45 46
   Rru_A2426 NONE
   Rru_A2427 2827911 .. 2827940 +  -2.7  -3.15574   CGTCCTTTTCCCAAA       GCCAAGGATTTCG CCGC CGATGACCTTCGC        TCTTCGTCCGCTTCG  43 104
   Rru_A2428 2828695 .. 2828752 + -14.2  -4.66163   GCCCGCAGCGGGAAA TAAGGCGACGCTCCACCGTCCGCACCCC TCAT GGGGA-CGGACGGTGG-GCGTTCCTTGA TTTTTCCCTAAACGT 100 23
   Rru_A2429 2829200 .. 2829232 +  -3.4  -3.12668   TGATGGTGAAGCAAA     TCGCCGTCGCGGTCTG ATC CGGATCGCT-CGG-GA     TTGGCTATAGCCCTC  45 86
   Rru_A2430 2829824 .. 2829834 +  -2.4  -3.63515   CGGCGGCGTCGCTTG                 CCCG GTA CAGG                 TTCTTGCCGATCGCC  51 255
   Rru_A2433 NONE
   Rru_A2434 2833352 .. 2833362 +  -2.4  -3.02144   TCGAGTGAGGGAGGG                 CGGG CGC CCCA                 TGTTCGACAAAATCC  41 33
   Rru_A2435 2834733 .. 2834773 + -24.8  -4.15044   TTGATCCTATCTCCT  TTGGGGACGGCCTCCCGC CGCGC GCGGGAAGCCGTCCCCGA  TTTCTTGAGCGGAGC 100 59
         aat 2835796 .. 2835822 + -10.9  -3.53012   TCAGCGACCCCAGCC        GCAG-GTCGCCG CCCA CGGCGATGCTGC         TTTCGCCCACCCGCG  70 359
   Rru_A2441 2841816 .. 2841834 + -13.1  -5.24129   GGATCAATGAAGAAA             GGGCGCC GAAGG GGCGCCC             TTTTTTGTAGGGGGA 100 60
   Rru_A2442 NONE
   Rru_A2443 2843558 .. 2843570 +  -3.3  -3.02166   CAAAACCGAAAAACG                GAACG ATA CGGTC                TCGTTTACTTGGCCG  43 98
   Rru_A2444 2844271 .. 2844283 +  -3.4  -3.21934   AACGGCGTTGTGATC                GACA GATGA TGTC                CTTTTCTGCCCCCCA  45 17
   Rru_A2445 NONE
   Rru_A2446 NONE
   Rru_A2447 NONE
   Rru_A2448 2848003 .. 2848017 +  -3.5  -3.78775   CGCCGGTCAATCCCT              CG-CGG TGGG CCGTCG               TTTCGTCATGGCCGG  57 139
   Rru_A2450 2849089 .. 2849101 +  -3.4  -2.97764   CCGCCCCTCCCACCC                CCTT GTGCG AAGG                TGAATTTTTTCTCTG  42 56
   Rru_A2451 2850232 .. 2850288 + -15.3  -2.87132   TCAATTCCGACGCCC GCCCGCGGGAACAAGCCATCAAGGTG TTTCGT CGC-TTGATGGCTTGTTCCCGGGGAA TCTCTCGAGAAACGC  79 164
   Rru_A2452 2851260 .. 2851310 + -21.9   -3.0806   CAAGGACGCCAATCT TC-CCTCACCCCTTCCCCTCCGCC TTCG GGCGGCGGGGAATGGGGGAGGCGA TGTTGGCGGTTTGCA 100 59
   Rru_A2453 2852837 .. 2852849 +  -3.3   -5.0538   CCTTTTTCACGGACC                ATCCG GGG CGGAG                TTTTTTCAGATGACG  80 84
   Rru_A2454 2854058 .. 2854072 + -11.4  -3.12856   CGCGCCCTTGAAGCC               GCGCAC GGT GTGCGC               TATATTCACTGTGTC  69 253
   Rru_A2455 2854429 .. 2854466 + -14.1  -5.02476   CCTCCGCGCTGGACG   CCTGAAAGCCCCGGAAC CCAA GCTCCGGGGCTTTCTTG    TTTTTTCAAGGCTCT 100 77
   Rru_A2457 NONE
   Rru_A2458 NONE
   Rru_A2459 2858361 .. 2858382 + -11.6  -4.29106   CTTCGGCCGAAGAAA           CCGCCTTG CCGTTA CAAGGCGG            TTTCTTCCTATGGGG  93 195
   Rru_A2460 NONE
   Rru_A2461 2861221 .. 2861239 + -13.1  -4.48987   CGATCCCACTGCCAA             GGCGCCG TTTTT CGGCGCC             TTTTGCTTATCAAGG 100 56
   Rru_A2464 NONE
   Rru_A2465 2866301 .. 2866343 +  -3.9  -4.47328   CCCTCGCCCGTCCGG GACCATGAC-CCGCGCGAGG CCCC CCTCGCGCCCAGTCCGGGAC TTTTCTCATGCGCTT  68 79
   Rru_A2466 2866835 .. 2866876 + -31.1   -4.4009   GGGAAACGCCAAAAA GCCGCGTCCGGATCTTTCC TTGG GGGAAGATCCGGACGCGGC  TTTTATAGCATAAGC 100 69
   Rru_A2468 NONE
   Rru_A2469 2867918 .. 2867937 + -12.1  -3.28712   CCCGATCGCGCACCG            GGGGCCC CTTCCC GGGCCCC             TTGTCCCGACCCCGC  76 41
   Rru_A2470 NONE
   Rru_A2471 2870713 .. 2870749 + -21.1   -3.5764   GGCGTTAAAAAGAGA    GCAAACGGCGTTAAAGG ATC CCTTTAACGCCGTTTTC    TTTAGGGATCGGCTT 100 45
   Rru_A2473 NONE
   Rru_A2474 2874990 .. 2875017 +  -8.2  -4.19177   TCGCCGACCCCAGCG        GCGCCCGCCCGG GAAA CCGGGAAGGCGG         TTTATCTTCGCCAAT  75 115
   Rru_A2475 NONE
   Rru_A2476 NONE
        proX 2878619 .. 2878653 +   -23  -4.93877   TGATCGTGAAGCAAA     TCGTCGCCGCACTCTG GAC CAGAATGCGGCGACGA     TTTTATTTAGTCCGC 100 106
   Rru_A2481 NONE
   Rru_A2482 2885103 .. 2885118 +  -7.5   -2.8844   CCTTCGCGCGCCTTT              GCCCC CACAGT GGGGC               TCTCGTCTAGTCTCG  51 101
   Rru_A2483 2886660 .. 2886688 + -10.3  -3.74178   GCGCCCAGATCGAGG        GGCGGCTGGTTTT GCG AAAGTAAGCCGCC        TTTGGCCTTTGGTTA  76 3
   Rru_A2484 2888492 .. 2888526 +   -15  -2.52464   GCCGCCTGATCCCCC     CGGGGGGGCGCT CCCTGAGCCTT GGCGCCCCCCCG     TCGCTTCCGCCCGAC  76 32
   Rru_A2485 NONE
   Rru_A2486 2891351 .. 2891371 +  -5.3  -3.64703   CCAGGGCGTCGTCGC            GCAGCACCA CCT TGTTGCCGC            TTTCGCTGAGCCACA  57 387
   Rru_A2489 2895892 .. 2895915 + -13.8  -4.63218   CACCACCATCTCAAG          GGAGCGACCC GCCC GGGCCGCTCC           TTTTCTTAGCGGAAA 100 56
   Rru_A2491 2898153 .. 2898180 + -16.2  -3.01712   GCTCAGCAGGCGCCA        CAGTCCGGCCGC CAGG GCGGCCGGGCGG         TCTTCGCCGCCAACC  79 168
   Rru_A2498 NONE
   Rru_A2499 2907233 .. 2907245 +  -2.6  -3.61398   GCCGGCGCGAACGCG                GGGC CCCTA GTCC                TTCTTGACCGCCCCG  49 6
   Rru_A2500 2908009 .. 2908022 +  -2.3  -2.69998   TTGATGGAGTGCGCC               GCAAC ACTA GTCGC                CTTGGTTGATTTGGT  39 57
   Rru_A2501 NONE
   Rru_A2502 2909281 .. 2909316 + -10.4  -2.78384   TCCCGAAATCCCGCG   CCCAGCGCAGGCCGGC CTCGGT GCCGGC--GCGCGGGG    TGTACTCGCAGCCGA  57 41
   Rru_A2504 2911721 .. 2911770 + -13.6  -3.84346   ATTCCCGCGCCGTCT GATCCCTGATGCCCCTCGGCCCGG GAAA CCGGGCCGA-GGG-AGCCGCGATC TATTTCTTTCGATAT  91 24
   Rru_A2505 2912898 .. 2912923 +  -2.5  -2.79248   CCGGCGGCCGCTTGG         CCAGGAAGG CCGCCACC CCTTCTCGG          TAGTCTTCGGTTTCC  38 54
        pyrE 2914627 .. 2914662 +  -3.9   -4.4017   AACCGGGCGACTCGG   CGGC-GGC-CGAGTCGC CGCC GCCCCTCGCGCTAGCCG    TTTTATGCGCCTTGA  65 102
   Rru_A2508 2916347 .. 2916373 + -19.5  -5.30616   CCGCTTGCCAAGCAC         CCCCTCCTCCC CTTGT GGGAGGAGGGG         TTTTTCTTTGCCTGG 100 73
   Rru_A2509 2917436 .. 2917454 +  -2.3  -3.63464   CCCTGAGTTTCGTAT             CCTCACG CCGTA TGAGAGG             TATTCTTATTTACCG  49 35
   Rru_A2510 2918105 .. 2918132 +   -12  -5.93809   CGTCTTTTGGTGAAT        GCGGCCGGCGG CTCCCCT CC-CCGGCCGC        TTTTTTTTGTCGCCC 100 54
   Rru_A2511 2920658 .. 2920668 +  -2.4  -4.07568   GGTGATATTGACGAT                 GGCG CCC CGGC                 TTTTGCGCAGGGGCG  58 377
   Rru_A2515 NONE
   Rru_A2516 2927295 .. 2927328 +  -4.4  -4.11216   TATCGGGCGATCAAG     CCGGCCGCCAG-CTC GGCCA GGGCCCGGCGGTCGA     TTTTCCCCGTCAGGG  61 47
   Rru_A2518 NONE
   Rru_A2520 2932264 .. 2932275 +  -7.2  -3.18274   ACACTTTTCGCCATC                CCGC TCTA GCGG                 TTGGCTTGGCGTAAG  54 286
   Rru_A2521 2937407 .. 2937420 +  -8.1  -3.64541   ATAGGATCGCCCGCC               CCCTG CTCC CAGGG                TCTTTGATTTAATAG  64 37
   Rru_A2523 2938844 .. 2938864 +  -2.4  -3.53012   GCAACCGCCCCACCC            CGGCCTCG ACCAG CGAGGCGA            TTTCCGAGACCAGCA  48 271
   Rru_A2527 2942945 .. 2942958 +  -3.1  -3.52093   TTCAGCATCGACCAT               CATCT GCGT AGGTG                TTGTCGTTCCGCTAT  49 464
   Rru_A2534 2948998 .. 2949044 +  -7.3  -5.71712   CGGTTAGCCTTAAGG GGATGAGGGGGGT-GGAG CCCACGACCAAC CACCCACCCCCCTCAGCC TTTTTTTATGTCGGG 100 41
   Rru_A2535 NONE
   Rru_A2536 2951198 .. 2951222 +  -9.2  -4.34402   AGAGCGTAAAGAAAG          GGGGGTGGTT CGCTT GGCCGCCCCC          TTTTGATATCGAAAC  82 54
   Rru_A2537 2952077 .. 2952089 +  -9.1    -4.067   ACGCATTCCGAGAAC                GACCG CTC CGGTC                TTCTTATTGATTTGG  76 55
   Rru_A2538 NONE
   Rru_A2539 NONE
   Rru_A2540 2954841 .. 2954858 +  -3.3  -2.71712   ATCACCCGATCGATC             CCCCGACC AAA GG-CGGCG             CTTTCGGCAAGCCGA  40 306
   Rru_A2542 NONE
   Rru_A2543 NONE
   Rru_A2544 2959099 .. 2959129 +   -14  -3.14132   TGACAGGTCACCGTT       TCCGCGGTAAAGGG GGG CCCTTTAACGCGGC       TTGATCCAGGCCCCG  78 38
   Rru_A2545 2960149 .. 2960163 +  -4.9  -3.90112   GACCGACGATTTCCT               CGGTG GCCCG CGCCG               TTTGATTGGCCAGGG  61 419
   Rru_A2547 2963388 .. 2963414 +  -9.3  -2.71712   GCGGCGGACAGAAAA         AGGGGCCGTGG AAAAA CCACGGCCCGA         GTTTAGGGAGGAAAC  57 54
   Rru_A2548 2964798 .. 2964821 +  -4.5  -3.17075   TTGTCTCCCCCCTGG          CGCAGCGAAC GCTGA GTCCGC-GCG          TTGCCTTGCCGCAGC  48 67
   Rru_A2549 2965883 .. 2965908 +  -4.5  -3.54459   GGCGCCCAGGCGCGG         CCCCAGGTGGT CGAT GCGGCCGGGGG          TTTCGGAAAGCTTGG  52 136
   Rru_A2552 NONE
   Rru_A2553 2969378 .. 2969418 +    -9  -3.14564   ACACCCCCTGGGCCA TGCGGCCGG--TTTCCGAGG CCG CCTCGGCGACTCCGGCCACA TTGATCGCCACCTCG  59 136
   Rru_A2558 NONE
   Rru_A2559 NONE
   Rru_A2560 NONE
   Rru_A2561 NONE
   Rru_A2562 2984053 .. 2984067 +  -6.4  -4.26076   GGAAGGGACGAGCCA               TTCGCA CGC TGCGGA               TTTTGGTCGGACTAG  71 140
   Rru_A2575 NONE
   Rru_A2576 NONE
   Rru_A2577 2999405 .. 2999419 +    -7  -3.45768   CAAGCGCAGGGTTTC               CAGGCG GGT CGCCAG               TTCCTTGATGTTGCG  56 76
   Rru_A2592 3013217 .. 3013229 +  -6.2  -2.77899   TTTGGCCGCATACAG                GGCC TGATC GGCC                TCGTTCATCAGGGCG  47 70
   Rru_A2597 NONE
   Rru_A2598 NONE
   Rru_A2599 NONE
   Rru_A2600 3023164 .. 3023178 +  -4.2  -3.53091   AGCGCATCAATTTGG               CCGG GCGGCCG CCGG               TTTCGGCAAAAACCT  51 199
   Rru_A2602 3026890 .. 3026903 +  -5.2  -4.08692   CCCTTAAGGGAAACC               CCGG ATGGTG CCGG                TTTTCCGCCCCATTC  61 207
   Rru_A2603 3027739 .. 3027753 +  -2.7  -4.18018   AAGCGGAGGAAGTCG               GCCTC GGGCA GCGGC               TTTTCGATCAGGAAG  63 108
   Rru_A2607 NONE
   Rru_A2608 3033679 .. 3033727 + -15.8  -4.19371   GCCACCAAAAAAAAT CGGGGCTCCCGCAGACTCCGCC CATCA GGCCGAGCCCGCGGAAACCCCG TTTCTTGGACGTTTC 100 88
   Rru_A2609 NONE
   Rru_A2610 NONE
   Rru_A2611 NONE
   Rru_A2616 3045630 .. 3045665 + -16.9  -2.91274   AACGCGGTTTCGGTG   GGCGGTGTGCGCGGGGC GGTT GCTCCGCGC-C-CCGCC    TGTCGTTACAATCCC  85 72
   Rru_A2617 NONE
   Rru_A2618 3046977 .. 3046990 +  -8.1  -4.25104   CGGGGGTGTTTCCCC               CCGTC AAGG GACGG                TTTTCATACGAGGAG  75 48
   Rru_A2619 NONE
   Rru_A2620 3049781 .. 3049810 + -21.5  -4.35483   CCTTCGGCATGCCAA       CGGCCCGGCCGGGA TTG TCCCG-CCGGGCCG       TTTCTTATGATCAGC 100 54
   Rru_A2622 3052409 .. 3052419 +  -8.2  -3.63515   AAATACCGCCCAACA                 CGCC GCC GGCG                 TTATTGGACGTGAAG  65 298
   Rru_A2625 3056046 .. 3056060 +  -9.2  -3.14931   GGTGATGCGCTTGGT               GCTGCC CAG GGCGGC               TTCCTCGAAGGTCAC  59 512
   Rru_A2627 NONE
   Rru_A2628 3058425 .. 3058437 +  -9.1  -2.82516   CGCCAGCCAGCCGCG                CCGCT TAT AGCGG                TATCCTGATCAAGCG  57 16
   Rru_A2630 NONE
   Rru_A2631 3061287 .. 3061323 +   -13  -4.25104   CTTGGCGGCGAGCGC   GG-CGGTGGCCTCGCCGG TCA CCGGC-AGGCCGGCGTCC   TTTTGATAGCCGCGG  91 127
   Rru_A2635 NONE
   Rru_A2636 3064873 .. 3064892 +  -2.8   -2.6961   TTTTTTCCCTCAAGG            CGCCAGTGT TCG ACGC-GGTG            ATTCGTCTTGTTTGC  39 73
   Rru_A2637 3067471 .. 3067498 +  -3.3  -3.24146   CGCTTATTGGCCTTA        CCGGCCTAATC AGAAGC GGTCGGGCTGG         ATTTTGGTTGCCGCG  45 17
   Rru_A2638 3068799 .. 3068822 +  -8.2  -4.69664   ACGGATCGCACTAAT          CTTGCGTCGAC AGA GTCGA-GCGAG          TTTTTCCGTCATCTC  83 337
   Rru_A2643 3074158 .. 3074190 + -13.4  -4.25104   CCCCGCCCGGACCAA      GGTCGCCCTCACAG CCATT CCCTGAGGGCGACC      TTTTGATGGACGACG 100 86
   Rru_A2644 NONE
   Rru_A2645 NONE
   Rru_A2646 3076228 .. 3076267 + -17.9  -3.32844   CTGGCCGCCCTTCGC  GGCGCGGCGCGGGGTTAG CTTCC CCAATCCCG-GCCGCGCC  TTCTGCCCTAACCCC  95 8
   Rru_A2648 NONE
   Rru_A2649 3080129 .. 3080151 + -10.4  -3.73783   GAAACGCGTTCCCTG           CGGCCGGGTC AAA GCCCCGCCCG           TTGTTCCGTTGCCTG  70 359
   Rru_A2655 3084577 .. 3084600 +  -3.8  -3.04322   CAAGCGCCGGCCGGG          CGGCGGCC-AT GCG ATCGATCGCCG          TATTGGCAAGTTGGG  44 520
   Rru_A2703 3128303 .. 3128328 + -10.5   -5.1101   ACCAGATAAGAAAAA         GGACGGTGTCTT GAA AAG-CGCCGTCC         TTTTTTACATCCTAA 100 170
   Rru_A2704 3128898 .. 3128916 +  -4.4  -5.28176   GGGGCGGTCTTGACA             TCGCCAGG GCT CAGGGCGA             TTTTTTGTCCATGAG  89 271
   Rru_A2705 NONE
   Rru_A2706 3130228 .. 3130240 +  -9.1  -2.71712   AAAGGCCGGAAAGCC                GGCCA GGG TGGCC                ATTTCACGGCGCAGA  55 250
   Rru_A2710 3134138 .. 3134156 +  -6.7  -3.53012   TGCAATACCGCCGCG            CCCTCGGC GCGG GCC-AGGG             TTTCCAAGGCGCCCA  58 190
   Rru_A2713 3135623 .. 3135634 +  -2.2  -4.11394   GGCCGAGGAACCCTT                TGAC GTGC GTCG                 TTTTACGCATAAAGT  57 254
   Rru_A2714 3137368 .. 3137378 +  -3.2  -3.48276   AAGTACGCATCCAAC                 GATG CGC CGTC                 TTGTCTGAGGCGGGG  49 295
   Rru_A2715 3139266 .. 3139277 +  -5.8  -4.57569   AGTGGCCTTGATCGT                CAGC GGGC GCTG                 TTTTTACGGGGATGG  74 223
   Rru_A2716 3140637 .. 3140649 +  -9.1  -4.07568   GCAAAAGAAAGGAAA                GGGGT CTG ACCCC                TTTTAAAGAGAGCGG  76 74
   Rru_A2718 NONE
   Rru_A2719 3145870 .. 3145880 +  -3.2  -2.72511   ATCGTGGAAGCCTTC                 GCAT TCG GTGC                 ATTTGGCGGGATCGA  40 147
   Rru_A2721 NONE
   Rru_A2722 3149026 .. 3149063 +  -6.1  -3.83998   AGGGCGCAGCTAAAC   AATGCCGCGGTGAGGGG AAGA TCCCTCATCGCGGAGAC    TTTGATCTGGCATCC  60 39
   Rru_A2723 3149622 .. 3149640 +  -5.3  -2.88579   GACATGGATCCCCCG             GTGGTTG TCGAT TAACCAC             TCTGTCGCGCCTTCC  48 11
   Rru_A2724 NONE
   Rru_A2725 NONE
   Rru_A2726 3154995 .. 3155038 +  -6.6  -3.09516   AAATCCCGATAGCAA GGCAAAGCGTCGGCGCGCC CCGCTCC GGCGCGCCCG-GATTCGCC TTGGGTCCTCAGACC  52 40
   Rru_A2729 3157369 .. 3157379 +  -2.4  -3.06696   TAGCCCGCTCTCGGT                 GGCC GAC GCCC                 TGTCTTGACCAAACG  41 7
   Rru_A2731 NONE
   Rru_A2732 NONE
   Rru_A2733 3162269 .. 3162282 +  -2.4  -3.01966   GACTATTCCTAACAA               GATC CGGGCT GATC                GCTTTTTTTTCAGGA  41 86
   Rru_A2734 NONE
   Rru_A2735 NONE
   Rru_A2736 3166899 .. 3166922 +  -4.4  -2.62184   CGATGGCCTCGGCCC          GGGTGCGCTG GTAA TGGCGCGCCG           TGGTCTGGGCGGCGC  42 468
   Rru_A2754 3187874 .. 3187888 +  -5.8  -3.10545   TCTTTATTGTACTCG               TTTTCT AAA AGAAAA               TACTTTTCACGTCTA  49 369
   Rru_A2757 NONE
   Rru_A2758 3190883 .. 3190914 +  -8.7  -3.29144   GGCGAAGTAAGGGGG     GCCGAAAGACGGCCC TTGC GGGCCGTCC--CGGC      TTATGACCCCGGTGC  63 31
   Rru_A2773 3208020 .. 3208077 + -18.3  -3.14132   GTTCTTGACCTCGCT CGCCACCA-CGGCGAATCCCTTGCCGGC GTT GCCGGCATGGGCGGCTTCGATGGTGGCG TTCATCGCCAGAAGA  86 440
   Rru_A2777 3212726 .. 3212753 +  -4.9  -3.65529   CATAACGCGGCACAT        CTGTATAGCGT AGCTTG ACACTATACGG         TTTGCCTGCCAGTCT  54 53
   Rru_A2778 NONE
   Rru_A2779 3213729 .. 3213760 +   -10  -3.53444   GGCGATCGCCGAAAC      CCGCTCGGCCGC-GC CGT GCAGCGACAGGGCGG      TTTCCGCCCCGATCG  67 347
   Rru_A2783 3217472 .. 3217521 +  -5.6  -3.61398   CCCTCGGGGTAGAGT GGCACCGGACTTGCGTTGGTCGGGC GCC GCCCC-CCATC-CGGGACCGG-GCC TTGTTCCCCCCGACC  57 166
   Rru_A2784 NONE
   Rru_A2785 NONE
   Rru_A2786 NONE
   Rru_A2787 NONE
   Rru_A2788 3223733 .. 3223752 + -10.6  -3.28712   CGGTGATCCCCTGGG            CGCCGAGG CTTG CCACGGCG             TTCTCGACAACCGCC  66 265
   Rru_A2790 NONE
   Rru_A2791 NONE
        thyX NONE
   Rru_A2793 NONE
   Rru_A2794 3229311 .. 3229331 +  -8.1  -3.53444   CCGCCACCGAAACCG            GCCGGCCGC GTC GCGCCGGGC            TTTGGCCAACGGTCG  60 181
   Rru_A2800 3234034 .. 3234060 + -17.3  -4.18018   GGCCCGCCCTCGCCA         GGGCGGCTTCC CCAGC GGAGGCCGCCC         TTTTCCATGCCCGGG 100 56
   Rru_A2802 3235373 .. 3235399 +  -7.2  -4.08945   CGGTCGCCACCAGTT        CGG-GCGCCCC CTGATC GGTGCGCGCCG         TTTTGGGCGCCTCGT  67 414
   Rru_A2810 3244328 .. 3244341 +  -2.3  -4.57073   AACCGCGTCGGGGCG               GCGAG CGGT CTGGC                TTTTTGGAAGGAGTC  66 49
        rimO NONE
   Rru_A2812 NONE
   Rru_A2813 3246928 .. 3246975 +  -6.9  -2.58686   TGGACCGCCTCCTAA TCGTGACGCGGTGAGCG-GGGA CCAGA TCTCGCGCTCGCCGCTCCAGGG GATTTTCTCTGGGCT  49 26
   Rru_A2814 NONE
   Rru_A2815 3247864 .. 3247888 +  -4.1  -3.08032   TAGCTTTAAGACTGT          AGACCGCCC AAGGTAC GGGCGGGCA          TCCTTTTCAGACGGA  43 109
   Rru_A2816 3248578 .. 3248628 +  -5.9  -3.05384   CCCCCCTCCATGCCG CCAAAAGCGATCGGGCCGCCCTTC TTGC GAAAGGCGGCCCGAA-GCGGACGG TTCGATGAGAAGAAA  49 108
   Rru_A2827 3260060 .. 3260074 +    -7  -3.14132   GCCCGAGGCGCCCCT               GGCGGC GGA GCAGCC               TTGATAACCGCAGCG  54 7
   Rru_A2828 NONE
   Rru_A2829 3261029 .. 3261052 +  -3.8  -3.53012   CCCGATCTTCCCCCG          GGGCGG AGCCCGTCATGA CCGCCC           TTTCCCAGCCGGGCA  49 8
        fliP 3261882 .. 3261936 +    -7  -3.67597   CGGGAAGGGCCTTGA CC-GGCTTTGCCCGCCGCCCTCGCGCC GTCA GGCG-GCGGGCCA-GGGCGATGCCCGG TTGTTCGATCAGGCG  61 70
   Rru_A2842 NONE
        flgG NONE
        flgA NONE
        flgH 3277078 .. 3277094 +  -5.7  -2.90496   CTTCCCCTTCTAATC              GGCGGGG TAT CACCGTC              TCCTTTGGGAAGGGG  48 28
   Rru_A2846 3277955 .. 3277973 +   -11  -3.76492   TCCTGCATGCCGCCT             TCCTGGAG ACT CTCCAGGG             TTTCCTCGGCTTCCC  77 394
        flgI NONE
   Rru_A2850 NONE
   Rru_A2851 3281368 .. 3281397 +  -9.9  -3.04696   ACGCTTTAGAGCAAA       TC-CCGCGCACGCC GTT GGCGAGCGCGACGA       TGATTTGCTTGCTTA  64 32
   Rru_A2852 NONE
   Rru_A2853 3285373 .. 3285407 +  -3.3  -4.07568   GGGGCTGGCGGAACA     GGCGGAGCGAGGGGT ACCAC ACCGTGCGCGACGCC     TTTTGCCCCCACCGC  59 127
   Rru_A2859 NONE
   Rru_A2860 NONE
   Rru_A2861 NONE
   Rru_A2862 3296625 .. 3296635 +  -2.4  -4.25104   CGCCCTTAAGCCGCC                 GCCC CAG GGAC                 TTTTCGTCCCGCCGC  60 138
   Rru_A2864 3298254 .. 3298282 +   -21  -2.52464   GCCTGATCCAAAGAC        GGCGGGCTCCGG TCTCC CCGGGGCCCGCC        TGCCTTGGCAAAGCG 100 35
   Rru_A2867 3302876 .. 3302893 +  -2.7  -2.71712   TCTGATATGTTAAAG             CTATCTT CTCC GAGATGG              GTTTCACGGGCAACG  39 81
   Rru_A2868 3304629 .. 3304641 +  -6.2  -3.89881   ATGCGGGCGCCTTCT                CGCC GTCCG GGCG                TTTGTAGCGATTGCT  62 47
   Rru_A2869 3305434 .. 3305451 +  -4.8  -3.53012   TTTCATGAACTGAGC             GG-CCGC TCGTT GCGGGCC             TTTGCCGCAGGAAAG  52 33
   Rru_A2870 3307045 .. 3307081 +  -7.9  -3.21099   AGGGGGCCTAACCCC    CTCGCCGCCGAGGCT CGCGAGA AGCCTAGCCGGCCAG    TTGGTCGTGGACCAG  57 30
   Rru_A2874 3311856 .. 3311894 + -18.9  -3.55761   CGCCCCTGCCCCTCT  G-CGACCACCCCCGGCGC CCAC GTGCCGGGGGTGGTGGTC   TTTAGGCCCTGGGTG 100 399
   Rru_A2876 NONE
   Rru_A2877 3316054 .. 3316070 +  -2.1  -3.14136   GAACGCGAAAGGGAC              GCCGATG AGA CCTCCGC              TTGGATCCTTGCTGC  43 99
   Rru_A2878 3316747 .. 3316761 +  -5.6  -4.56597   TGATCCGGATCACCC               GCCGCT TTG AGCGTC               TTTTTCCCGGGCGGC  74 67
   Rru_A2880 3320733 .. 3320758 +  -3.2  -2.86343   CGGCGGCCTGAAAGG         AGTGGTCGGA AAATGA TCCGACTGCG          TATCATCGTTCCCCT  42 10
   Rru_A2881 3322170 .. 3322189 + -10.7  -5.14563   AACCCCATGAAAAAA            GCCAGCC CAAACC GGCTGGC             TTTTTTCATGGGGAA 100 80
   Rru_A2885 3328652 .. 3328671 +  -3.4  -2.74488   GATCTGATGGACGCC            CGCCGCGT CTGA ACACGTCG             TCCTTCGCGTCCTTC  41 14
        carB 3332013 .. 3332058 +  -6.7  -3.95836   CGCCGCAGGGGGGAT TAGGCGAAG-CGTCGCGTGGCG GGG TGCCGCGCGACGGCATGGACCA TTGTATTTTAAGGAT  65 42
        greA 3332586 .. 3332604 + -13.8  -5.27335   CCCTTCCCGCTCTCA             CCCCCGCT TCC GGCGGGGG             TTTTTCTTTGCCCGC 100 56
   Rru_A2888 3333447 .. 3333463 +  -2.1  -3.24902   TTACGTGACATCCGT              GGTGAGG AGA TCACGCC              TTAATGGTGATCTTC  43 5
   Rru_A2889 3334079 .. 3334094 +  -4.6  -3.53012   TCTGGCAGCAGATAA              GATGCC AAAG GGCAGC               TTTGGAGGAAGAGGG  52 116
   Rru_A2890 3334539 .. 3334549 +  -4.6  -2.59668   CGCCATATCGATGCC                 CTGC GTG GCGG                 ATTGTGAGCCTCTTC  43 8
   Rru_A2891 3335383 .. 3335394 +  -7.2  -2.87132   GCAAAACGATGGTCG                GCGC CGGG GCGC                 TGTCTAGGAACAGGC  50 154
   Rru_A2897 3340363 .. 3340386 + -12.4  -4.54727   CCTTCCGCCCCGGGC          GCGGTACCCG GGCG CGGTTACCGC           TTTTGCTTTACCCCG 100 61
   Rru_A2898 3341433 .. 3341447 + -11.4  -4.17089   AAGCCGACCGCGAAG               GGGCGT TCC ACGCCC               TTTTGGCGGTTTGGC  89 51
   Rru_A2899 3342758 .. 3342778 +   -14  -4.85782   CCTGTTCCGACTTTA            CCCCCGGA CTTGC TCCGGGGG            TTTCTTTTTGGCCAG 100 330
   Rru_A2901 NONE
   Rru_A2902 3345182 .. 3345195 +  -2.5  -2.71011   ATAACTACTTTTCCG               TTTAA AACC TTAAA                TCGTTAAAGCGAGAT  39 68
   Rru_A2903 3347148 .. 3347159 +  -5.8  -2.62714   AATAATGGCTTCGAA                TGGG TTGG CCCA                 CTAATTTTTATTGGG  46 462
   Rru_A2906 3351352 .. 3351402 + -16.1  -3.95584   GGGGGATGCGTCTAT GGTGAGGCCGCGCCCGCT-TGACGA CCC TCGTCCCGGCGGGCCCGGCC-CTCC TTTCATTGATGACCG  95 376
   Rru_A2907 NONE
   Rru_A2908 NONE
   Rru_A2909 NONE
   Rru_A2910 NONE
   Rru_A2911 3355226 .. 3355254 +  -7.2  -2.80966   CAAGACGTAACCGCC        GCGCCACCGGCC GGTCA GGGCGGGGGGGC        TAGTCTTCCTTCCAT  50 31
   Rru_A2912 3356097 .. 3356108 +  -7.2  -3.25823   CGACGACACCCCCGA                CGCG TCCC CGCG                 TTGATCTAAGACCCA  54 10
   Rru_A2913 NONE
   Rru_A2914 3358459 .. 3358509 +  -6.7  -2.52623   ACGGCCCCCTCCCCC TGGCGCGACCGGTCGCGCCGCTCCA TAA TGGGACGCCCCG-CCGTTCGC-CCG CTGTTGTAAGGAAGA  48 46
   Rru_A2915 3358886 .. 3358902 +  -9.4  -3.30124   CCGATGGCCTGACCC              TGCCCG GCGTG CGGGCA              TTCTGAGCGATCAGC  63 3
   Rru_A2916 3360142 .. 3360164 +  -2.6  -5.04987   GCATATGAGTGGGGT           CAGCGGTAAC TGC GTTATGGCGG           TTTTTTCCAACTCTT  78 444
   Rru_A2918 3361173 .. 3361187 +  -4.2  -2.78712   AGCCAAAATATCCAT               TCCAGG CCT CCTTGA               TCCTTCCGTTAACGC  41 437
   Rru_A2923 3366464 .. 3366491 +  -4.1  -3.57263   GCTGGTCGACCTGCT        CGCC-GAGGTCG AAGGG CGAGCTTAGGCG        TTTAGGCCTCCGCGT  51 1
   Rru_A2929 NONE
   Rru_A2930 3376485 .. 3376506 +  -6.5  -3.40522   GCGCAGGCGTTCGAT           GGTGGC-GCC GCA GGCGGCCAGC           TTGTCCTCCACCCGT  56 165
   Rru_A2933 3379445 .. 3379471 + -21.6  -4.91109   TTTCTCCGTTTTTAG         CCCCTCGCGCGA ACT TCGCGCGGGGGG         TTTTTATCATCGGGC 100 100
   Rru_A2940 3389644 .. 3389665 +  -2.2  -3.54424   ATGATCATCCCAACG           GCGGAGTG ATCGAG CATTCCAC            TTTCCCGCGATAACA  47 17
   Rru_A2941 3390260 .. 3390284 +  -7.8  -3.02144   ATCGCTCGGGATTTG         CCCCTAGG-CG GGCA CGACCTCGGGG          TCTTCGGCCGGCTCG  56 163
   Rru_A2951 NONE
   Rru_A2952 NONE
   Rru_A2953 3402519 .. 3402536 +  -6.9  -3.53343   CCTGATGCGGGCGGG             GGGTAGG TTTC CCGACCC              TTTCCCACCCAGATT  58 77
        glyQ NONE
   Rru_A2955 NONE
   Rru_A2956 3408361 .. 3408385 + -13.6  -3.58343   TCACCAGCGTCCTGA         CGCC-CGCCTC TGTC GAGGCGCGGCG          TTTGGGCGTGGTGGC  77 79
   Rru_A2959 3411043 .. 3411077 + -12.7  -4.31835   AAAGGGGCACCTTAT     GCGGCCCCCTGGCGA GAGGA TCGCGCGGGGGCGGC     TTTCTTATCCCGGTT 100 73
   Rru_A2961 NONE
   Rru_A2962 3413218 .. 3413249 + -10.2  -3.14931   AGAGGGCAGCAAATC      GTCGT-CGCACTCTG GTT CAGAGTGCGCGGGAC      TTGCTAACCCGTCAC  65 48
   Rru_A2964 3414566 .. 3414595 + -17.9  -3.04248   GCCGACTTTTCGCGC       CCCGGCGGGTC CTTGTCGC GACCCGCCGGG        TCTTCCCCGCTGTTG  89 48
   Rru_A2965 3415747 .. 3415757 +  -2.4  -4.07687   CCCGCCTGGAACCAC                 AGCG CCC CGCC                 TTTTCCGGCGCCGCT  57 142
        ileS NONE
        lspA NONE
   Rru_A2968 NONE
   Rru_A2969 3420420 .. 3420442 +  -7.6  -2.80796   GCCGCCGGCCAAAAG           GAGACGCTTG CGC CATGCGTCAC           GTTTCGATCATCGGC  53 40
   Rru_A2970 3421591 .. 3421606 +  -3.2  -3.21099   CCGCGAGCCGATCCG              CGTCACG AAA CG-GGCG              TTGATGATCGAGGCG  44 409
   Rru_A2972 3424007 .. 3424023 +  -4.3  -3.15544   GTGACCGGCTTCCTT              CTTCCCG AGC CGCGGAG              TTGATCGCGATGAAG  48 5
   Rru_A2973 3425521 .. 3425547 + -15.2  -5.27335   AGCCCTTGATCAAAA         CGCGCCAGAG ACGATTC CTCTGGCGCG         TTTTTATTTGGAAAC 100 170
   Rru_A2984 3437454 .. 3437471 +  -6.9  -2.69151   GCGCGGCCGGTAGCC             CCGGGCG GCTA TGCCTGG              TGGTATGTCGACGCC  50 28
   Rru_A2985 NONE
   Rru_A2986 NONE
   Rru_A2987 3440987 .. 3440999 +  -4.1  -3.64371   GGGCGTTGATCGCGA                TCTTC CGT GAAGG                TTTCCCATGTCCCTT  51 16
   Rru_A2988 3441990 .. 3442041 + -14.4  -3.28712   CGGCAGGTAACGGCG CAGGATCTCGAAGGCGCGGCCC AATTGCCA GGGCCGGGCCTTGGAGATCGGG TTGTAGAAGGCCAGC  75 254
   Rru_A2992 3445610 .. 3445621 +  -2.2  -3.35616   CCTTGAGGAAAGGAG                GTGT TCCA GCAC                 TCTTCTATCATGCTG  46 255
   Rru_A3002 3459874 .. 3459911 +  -3.3  -2.78384   CGCCGCCTCGGTCGG   GC-GCCCCGGCGCG CCTTGCCACCC CCCGCCGGCGCCGC   TATGCTGGCCAAAAG  41 42
   Rru_A3003 3460759 .. 3460769 +  -8.2  -2.78018   TCAGCCGGGCCAGAC                 GGGC GAT GCCC                 TCGTTGATGACGGCT  52 142
   Rru_A3005 3462590 .. 3462613 +   -16  -3.81951   ACGCGAACGGCGAAA          GGGGCGC-CCC TGC GGGAGCGCCCC          TTTCCTGGTGTCGGG  95 51
   Rru_A3007 3465868 .. 3465909 +  -3.7    -4.208   CACTCTCACTGATCC CATGGACC-AATCTTCCCTT AAA AAGGGAAGATGCGGCCCAAA TTTCTCCTTTTGCGA  62 362
   Rru_A3009 3467718 .. 3467731 +  -5.9  -2.71364   GATAGGTGGCGGCGG               CGTCG ATAT CGGCG                TCATTGGGGCCGTCC  47 233
   Rru_A3011 3469146 .. 3469170 + -10.7  -3.28712   TAACCACGGACGGAA         G-GGCGCGCC CGGTCA GGCGCGCCGC          TTCTGGACAAGGCGC  68 38
   Rru_A3016 NONE
        fabG 3475261 .. 3475283 +  -8.5  -4.56597   AAATGACGGGGGCGG          CGGACTATCG AGCC CGATAG-CCG           TTTTTACGCGAGGCC  79 53
   Rru_A3018 3475998 .. 3476029 + -13.7  -3.28791   CTCCCTATATTAGGG      CGGCGGGCCTGAG TAAAAT TTCAGGCACGCCG       TTCTAAACCGCGCGT  81 91
   Rru_A3019 3476473 .. 3476491 +  -2.4  -3.96624   CTCCAGCATCAAGAA             TGTCGATT AAG AATTGTCA             TTTCTGATAAAGATA  54 16
   Rru_A3020 3477222 .. 3477247 +  -3.1  -2.82895   ATAACCGGGGGACAA         GGTATCGCGCG ATAC CGACCGATCCC          CTTCTTCGTCACGGA  41 245
   Rru_A3022 NONE
   Rru_A3023 NONE
   Rru_A3024 NONE
   Rru_A3025 NONE
   Rru_A3026 NONE
   Rru_A3027 3484812 .. 3484829 +  -8.3  -3.01712   CGCGCCCCCCTGGGC             CGGCGCG CTTG CGCGCCC              TGTTGGCGGACGGCG  56 93
   Rru_A3028 3487234 .. 3487268 +   -10  -3.51232   CGATGACGATCACCG     GCACGGTTTCGTCG ATCAGGG CGATGGGGCCGTGC     TTCATTTCGCCCGCC  67 350
   Rru_A3031 3491325 .. 3491341 + -15.1  -4.77757   AAACCCAAGACCAAG              GCCCCCG TTT CGGGGGC              TTTTCGTTTTTCCGG 100 202
   Rru_A3032 3492085 .. 3492099 +  -4.2  -3.53012   TCCTCTGCTGAAAAG               GCGG TCAGCCC CCGC               TTTGCAAGCCACGCC  52 30
   Rru_A3033 3492712 .. 3492724 +  -3.3  -5.34555   GAAAAGGGGGGTAAA                GGGAT CCG ACCCC                TTTTTTATCCTCTGC  85 52
   Rru_A3034 3493831 .. 3493868 +  -8.9  -2.57463   CGGGGTCGTCGCCCT   GGGCGGCGCGTGATCGG CCCC CCGTTCCGGCATCGCCC    CTTCTCAAAAAGATT  56 13
   Rru_A3035 3494502 .. 3494522 +  -2.3  -2.78816   CCCCGACCGCCGATG            ACAGGGCGC CTC GCCCCCCGC            TATACTGGGGCATGA  39 42
   Rru_A3036 NONE
   Rru_A3037 3499303 .. 3499313 +  -3.2   -4.6902   CGGATGCCCGGACGG                 CGGT TAT ACTG                 TTTTTCCCCTTCTAG  70 141
   Rru_A3038 NONE
   Rru_A3039 3503165 .. 3503200 + -11.1  -4.39166   CTACAGACGAAGTTC    GACCCGGAGAATGAC CGCCAA GCCGTGCTCCGGGTC     TTTTCGTATCTGCAG  93 110
   Rru_A3041 NONE
   Rru_A3042 NONE
   Rru_A3043 3507745 .. 3507764 +  -3.4  -3.53343   GAGCCGATAGGGCAA            CCATCCCC GGTG GGGGAACG             TTTCGCCGGCCCATT  49 41
   Rru_A3044 NONE
   Rru_A3045 3509125 .. 3509175 + -22.2  -3.21099   CTACGAGATCCTGCC G-CCTTAGAGCGGTGAGCGTGAA ATCGGG TTCACGCTCACCACTCTAAGGTC TTGATAGTCAAGCAA 100 19
   Rru_A3047 3510826 .. 3510853 +  -8.4  -4.07568   GCGCGGCGTCAGCTG        CGGCGCCG CCTTGAAGGCTT CGGCGCCG         TTTTCGCGGGCGCGC  72 169
   Rru_A3053 NONE
   Rru_A3054 3517950 .. 3517961 +  -3.6  -3.14564   ACGGCGACCAAGGTG                GCGT CGCC GCGC                 TTCATCGCCACGTCC  45 193
   Rru_A3059 3523900 .. 3523915 +  -3.2  -4.41302   ATCCGGCTATTTGGA              GCGGAT CTGA ATGCGC               TTTCTTCCTTTGATC  65 172
   Rru_A3060 3524272 .. 3524283 +  -5.8  -3.61103   AGCCGGTTCCCGAAC                CGAG GATC CTCG                 TTTAAACTGCCCTTA  57 172
   Rru_A3063 NONE
   Rru_A3064 3531828 .. 3531850 + -20.6  -5.75342   CGCGACCCGCCTTGG           GGCCGGGGAG ATC CTCCCCGGCC           TTTTTTTTGCGCGCC 100 73
   Rru_A3065 3532362 .. 3532372 +  -6.8  -3.16881   ACGCCCCTCGATTCT                 CTCC CCT GGAG                 TTCCTACCATAAGTA  54 122
   Rru_A3066 NONE
   Rru_A3067 3533736 .. 3533756 +  -6.1  -3.77219   CCGGGGACGGACGAC            GGAGGCG ATATGGG CGCCTTC            TTTGGCTTGGGTGAT  60 125
   Rru_A3071 3536171 .. 3536188 +  -3.3  -3.01924   CGTACCGCGATGCAA             CCCTTTC GCCG GGACGGG              TGTTGCCCCGGGGTA  43 59
   Rru_A3072 3538833 .. 3538850 +  -2.5  -2.54166   ATTCAAGGATCTGGC             TGGGCCG CGCC CGTCCCC              AATTTTCCTTGAAGA  38 299
   Rru_A3076 3542940 .. 3542973 +  -2.1  -3.81885   GACGGTTCCGTATTT     TGCACCGCAACCGGT CATA GCCGGAACCGGGGCG      TTATCTCTTTGTCTG  52 102
   Rru_A3077 NONE
   Rru_A3078 NONE
   Rru_A3079 3545717 .. 3545762 + -18.9  -3.53012   GCGATCATCAGGAGA CCACGACCGGGGACGGCGCCC AGAC GGGGGCCGTCCCCGGTGTTCG TTTGGGCGCCCAAGG 100 46
   Rru_A3080 3547166 .. 3547185 +  -2.2  -3.02402   TTTACGATCCCCCAT            GTGTAA CGTATAAA TTACAC             CTTGTTTGATGTCCG  41 191
   Rru_A3081 NONE
   Rru_A3082 3547791 .. 3547831 +   -14  -3.72576   GGACAGTCCGTGTCG  ACCCCGCGCCCGCT CCGTCTACCAAAA AGCGGGCGCGGGGG  TTTGATCAGGGGGCG  91 51
   Rru_A3087 NONE
   Rru_A3088 3553378 .. 3553388 +  -2.4  -2.71011   GTTCCATTACCCATG                 GCGG ACG CCCC                 TCCTTCACAGGGCAT  39 115
   Rru_A3089 NONE
   Rru_A3095 3562832 .. 3562856 + -19.3  -3.93288   GACGAGCACTAAGAA          CGCCGACGTCC CCA GGGCGTCGGCG          TTTCGTTGGATCAAA 100 57
   Rru_A3096 NONE
   Rru_A3097 3567206 .. 3567219 +  -4.5  -4.07526   CGTTCCCGCGGAACG               GGCGT CATA ATGCC                TTTCTGTCGATCCTT  61 41
   Rru_A3098 NONE
   Rru_A3099 3568276 .. 3568286 +  -2.4  -4.08216   CTCCCCCCCCTTAGA                 CGAC ATC GCCG                 TTTTAGGCGACCTGA  57 42
   Rru_A3100 NONE
   Rru_A3101 3570428 .. 3570468 +  -4.8  -2.64651   ATATCATGCGGCAAA TCGACTCGATATCTCCTGA TACC TCTCGAGA-ATCGAATCGA  TACCTTTCAGCCATT  43 117
   Rru_A3102 NONE
   Rru_A3103 NONE
   Rru_A3104 3575432 .. 3575452 +  -3.1  -3.09516   ATGACCCCGGGACAT            CAGGCCGGG ACA TCAGGACTG            TTCAGTGATGGCCGA  43 40
   Rru_A3105 3576700 .. 3576710 +  -2.4  -3.28712   CGCCGGTCTAGCTCC                 GCCG CAT CAGC                 TTCTGCAAAAGAACG  44 66
   Rru_A3107 NONE
   Rru_A3108 NONE
   Rru_A3109 3585805 .. 3585815 +  -2.4  -4.62069   TCAGGTCGGTTTTCC                 GGCG CAG CACC                 TTTTTGCGCTGGGCG  70 191
   Rru_A3118 3597533 .. 3597551 +    -8  -3.74693   GCCAGTGGCCATTCC             CTCCCGGC ACA GCCGGCGG             TTTGATGCCATGAGC  67 2
   Rru_A3119 NONE
   Rru_A3120 NONE
   Rru_A3121 NONE
   Rru_A3122 NONE
   Rru_A3123 NONE
   Rru_A3124 NONE
   Rru_A3126 3606657 .. 3606675 +    -3  -3.61398   ATCCTGGTCCAGGTT             GCGCATCG ATT CGATCCGG             TTGTTACCCGGCCAA  49 357
   Rru_A3128 NONE
   Rru_A3132 NONE
   Rru_A3133 NONE
   Rru_A3134 NONE
   Rru_A3135 3616194 .. 3616215 + -10.1  -3.54408   GCCGGGTTATTCCCC           CGGCCTCGA TGGG TCGAGACCG            TTCATTTCACTGCCC  70 58
   Rru_A3137 3619794 .. 3619846 +  -9.7  -3.05384   CGCCCGGGCCGTAAG GGGCCGGCGCCC--CGCCCTCAGAC GCCGG GGATGGGGGCGTTGGGCGGCGGCAC TTCGCTGGCGGGCGA  60 27
   Rru_A3140 NONE
   Rru_A3141 3625245 .. 3625294 +  -6.3  -3.53012   CACCGGCTCGCCAGA GCCCTCCGTCCGCCCCGTTTA TTGTCCTC TAAACGGGGCGGACGCTCCCC TTTCAAGGAGCCCGC  55 55
   Rru_A3142 3626566 .. 3626576 +  -2.4  -3.53012   CTTTCTTGAAGCCCT                 TGGG CTG CCCC                 TTTAACCGCAGCGGA  47 10
   Rru_A3143 3627494 .. 3627507 +  -2.4  -3.15249   AGCAAGATCAGCTGG               TTCG CCAGCC CGAA                TTGCTGGCCCATGTG  42 287
        mdoD 3630931 .. 3630977 + -19.7  -3.53811   CAGTACCATCCGTTT TAAGAACAGCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C-GATCTTA TTTCGCCAGGATCGA 100 23
   Rru_A3157 3649532 .. 3649543 +  -2.2  -3.63744   ACGGGGAATAACCCA                TCTG CACG CGGA                 TCTTTTCCGGCCCAC  49 142
   Rru_A3158 3650303 .. 3650316 +  -3.8  -3.01712   GTAAGAGATGCCCGA               TCCG GTATAG CGGA                TATTGGCCGGGAACA  44 281
   Rru_A3160 3653036 .. 3653056 +  -3.9  -3.39895   AGAGTCGGCGGGGCA            TTGCAGGAC ATG GGCCTGGAA            TTCATTAATCAGCAG  49 156
   Rru_A3164 3656650 .. 3656671 +  -5.1   -3.1352   GGTATGGCGCTTACG           CCC-TGGGCT GGT AGGCCACGGG           TCTCTTCCCTTCGGC  48 12
   Rru_A3165 3657540 .. 3657551 +  -7.2  -2.60615   TAAACCCGCTCCCCT                GGCG GTTC CGCC                 CTATTTCGCCCACAT  49 38
   Rru_A3166 3659443 .. 3659456 +  -9.5  -3.28712   CCGCAAAGGTCGTCG               GCCGC AAGG GCGGC                TTCTAAGACGCGGCC  63 6
   Rru_A3167 NONE
   Rru_A3168 NONE
   Rru_A3169 3663336 .. 3663367 +  -7.1  -2.73159   GACCATAGACCTTTC      GCGGGGACGGAGC GCTTAG GCTCCCGGCCCGC       CTTTCACGGGGTTCG  50 60
   Rru_A3170 3663799 .. 3663816 + -10.5  -3.77464   ACGCCTTCTTGGCGT             CCTGGGC ATTG GCCCGGG              TTTCGTCGATGATCT  76 149
   Rru_A3174 3667249 .. 3667271 +  -8.4  -2.58544   CCATCGCGCCCCTCG           GCCACCTTTT CAA AGAAGGCGGC           GTTCTCGCGATCGAC  52 421
   Rru_A3178 3671077 .. 3671088 +  -5.8  -4.30576   AGAACATAGCCGACA                TCGC CCTG GCGA                 TTTTCCTCGTCGCGC  72 374
   Rru_A3180 3673099 .. 3673112 +  -3.8  -4.30576   TTTCCCCCTGGCCTT               CCGA CTCATC TCGG                TTTTGCTCATGGGCG  68 360
   Rru_A3182 NONE
   Rru_A3186 NONE
   Rru_A3187 3677175 .. 3677197 + -14.1  -3.50853   CGCGCTCGCTGCGCC           GCCGCCTGC TGGTC GCGGGCGGC           TTGTGGTTGGCCGGC  86 47
   Rru_A3188 3678609 .. 3678621 +  -3.3  -2.60206   AAAAAAGCAACCAAT                GCATG GTC CTTGC                CGTTTCTTTCTCATC  40 66
   Rru_A3189 3679238 .. 3679260 + -16.3   -4.4078   GTCAAAAGACCTTGG           CGACGGCCC CTTGC GGGCCGTCG           TTTTGATTGCCCGCG 100 58
   Rru_A3190 NONE
   Rru_A3191 3681550 .. 3681562 +  -4.7  -2.61144   GCCGCACGGTGTTCC                CCGCC AAT GGCTG                ATCTTTCAACGCTGA  43 12
   Rru_A3192 NONE
   Rru_A3193 NONE
   Rru_A3194 NONE
   Rru_A3195 NONE
   Rru_A3196 3684766 .. 3684782 + -13.7  -4.55118   CTAAGCCCTTCACGC              GCGGCGA CCA TCGCCGC              TTTTCTGTGCAATTC 100 119
   Rru_A3199 NONE
   Rru_A3200 NONE
   Rru_A3201 3689549 .. 3689568 +  -4.8  -5.00616   CGTCCAAGGGGTCCA            GGCCCCGG CTAG CCGCCGCC             TTTTTTAGGCACCCA  81 134
   Rru_A3202 3692372 .. 3692399 +  -8.3  -2.69799   AAAGCGGCGGCTTTT        GCCCGCGAAGG GCGATG CCATCGCTGGC         TCCTCTCTGGCATGA  53 40
   Rru_A3203 3694907 .. 3694923 +  -2.1  -4.56775   CCTCCCGTCGTAAAA              CCCGTTG ATA CCACGTG              TTTTTGAAAAGGAAT  66 18
   Rru_A3204 3696779 .. 3696792 +  -5.9  -3.21593   TAAACGCTTGACATC               GCCGC CGCG GTGGC                TATTCTCCGCCGCTC  50 71
   Rru_A3205 3697124 .. 3697180 + -19.1  -3.53012   CGATGGCGTGGGGAT GCCCGACAAAACAAAAAGGCCGCTCCC GGCAA GGGA-CGGCCTTTTTGTTT-GTTCGGC TTTCAGAGAGGCGGC 100 136
        rnhB 3700527 .. 3700538 +  -7.2  -4.18693   CGGACACCACATCCT                GGGC TCCG GCCC                 TTTGGTTTGTCGTTT  71 76
   Rru_A3210 3701736 .. 3701766 + -13.4    -3.452   CTGCGCCCTTTAGCG      CGGGG-GCGTGAA ACCCGC TTCACGCTCCCCG       TTCTAAGTCTTTGGC  86 28
   Rru_A3213 3706127 .. 3706143 +  -7.9  -3.14132   CGGCCAGGGTCAAAG              CCGTCGC GCT GTGGCGG              TTGATGCGCAGCGAC  54 447
   Rru_A3215 3707954 .. 3707964 +  -2.4  -4.07568   TTCGCGGCTGACACG                 GGCG GCG CGGC                 TTTTCGCAGCCCCGA  57 60
   Rru_A3216 3711403 .. 3711434 +  -5.8  -3.73224   CCGGCTGGAATAACC     CG-GCCGGCGCGCG ACACGA CGGG-GCCGGCGCG      TTTCATCGAAAATAG  60 28
   Rru_A3217 3712034 .. 3712044 +  -8.2  -3.53224   CCCAAAAAGCGCCAA                 GCGC CGC GCGC                 TTTCGCCCAACAGTC  62 64
   Rru_A3218 NONE
   Rru_A3219 3714138 .. 3714157 +  -5.7   -4.1021   TTGTGACGCGGCGCG            TCGGTGA CGTGGA TCGCCGA             TTTCTCGTTCTGGGC  64 335
   Rru_A3222 3717804 .. 3717821 +  -6.9  -3.74747   GGGCGCGGCGGGGAT             GGCGATG AGCC CACCGCC              TTTGCTCGCCGTTAC  63 18
   Rru_A3223 3718677 .. 3718698 +  -9.3  -2.55074   GGGTCGAGGCGGGGA           TCGGCGCCG AAGT CGGCGCAGG            TGAATTCCCGTTCGG  54 70
   Rru_A3232 3727876 .. 3727923 +    -9  -3.53091   CTGGAAGACCGCTAA GCTTGCCCGCCGG-GGAACGG GGCATTA CTGTCCCGCCGGCGAGCGCGC TTTCCCGCCACCCGT  66 26
   Rru_A3233 NONE
   Rru_A3234 3730658 .. 3730709 + -15.9  -4.05446   CGCCTGAAGCCGTGA TGGAAAGGCGGGGAGGAAATGGC CCGAGC GCCGTTTCCTCCCCGCTTACCGA TTTGTAATTCCCCGC 100 54
   Rru_A3235 NONE
   Rru_A3236 NONE
   Rru_A3237 3735714 .. 3735728 +  -4.9  -3.36823   CTAGGGCGGCGATGG               CGCCG AAAAC CGGTG               TTCCCTTTTCCGCCC  49 366
   Rru_A3241 3738016 .. 3738034 + -12.4  -3.64703   GGCAGCGCCCAAAAG             GCCTGGGC CAG GTCCAGGC             TTTGGGTCAGGCGCA  77 148
   Rru_A3251 3748068 .. 3748097 +   -15   -4.4078   GTCATTGCCAAGGTT       GGGCCACGCTCC GCAAAG GGAGCGTGGCCG        TTTTGGTTGGCGCCC 100 445
   Rru_A3254 3751151 .. 3751177 +  -3.4  -2.71712   GCGCCGAGTCGACGC         CGATCGGCCGGG AGC CCCGCCCGTGAG         ATTTCCGCGAACCGA  41 0
   Rru_A3255 NONE
   Rru_A3256 NONE
   Rru_A3257 NONE
   Rru_A3258 3756436 .. 3756459 +  -2.2  -3.01712   TCGCTCACGCGGAAG          GCCCGGCCAT GGCA ACGGCCGCCC           TCTTCCAGACCAAGC  41 427
   Rru_A3260 3758086 .. 3758096 +  -8.2  -4.13767   CGGTGACGCGGAAAA                 CCGG CCC CCGG                 TTTTCCGCTCGCCAC  71 109
        metX NONE
   Rru_A3267 NONE
   Rru_A3268 3767832 .. 3767842 +  -6.8  -4.15044   GAACGCCGGAAACAA                 TCGG CAG CCGA                 TTTGTTCGAGCAGGC  67 189
   Rru_A3270 NONE
   Rru_A3271 3770085 .. 3770109 +  -7.8  -3.54459   CCCTATAATCCCAGA         CGCTC-CCGCC AGAC GGCGGAGACCG          TTTGGGGAAGATTGA  62 111
   Rru_A3279 3777708 .. 3777759 + -13.8  -3.53012   GCCGCCTCCGCCACG CGCCCGTGCC--CGGCGA-CGGTCC CTTGC GGACCGGTCGCCGGCGGCACGGCCC TTTCCGCGCCCGCAC  86 77
   Rru_A3280 NONE
   Rru_A3281 3779257 .. 3779274 +  -4.1  -3.53563   CGCCCCGTCGCCCGC             GCCTCTT TTGC AAAAGGC              TTTCACCGCCCATAT  49 41
   Rru_A3282 3780031 .. 3780044 +  -3.1  -3.09492   GTTGACTCAAGGGGG               CCC-AG TTC CTAGGG               TCTTGGGGTTAAAGC  43 84
   Rru_A3283 3780694 .. 3780734 + -13.5  -3.53012   GAAGCGAATCCCAAA  GCGAACCGCGTTAAA CGCCCCTCTTC TTTGACGCGGTTCGC  TTTACAGCGAGAGGC  86 146
   Rru_A3284 3781120 .. 3781154 + -14.3  -5.63103   ACCCGCCCGTGAAAA     CCCAAAAAGGGGAGC GCGAG GCTCCCCCTTTCGGG     TTTTTTTCGTTCCAG 100 55
   Rru_A3286 NONE
   Rru_A3287 NONE
   Rru_A3288 3785820 .. 3785836 +    -5  -3.18264   GCCGCCGCCCGACCT              GCGCCG CCGCC CGCCGC              TTCGTGACTCCGCCC  48 2
   Rru_A3289 NONE
   Rru_A3290 NONE
   Rru_A3291 3788166 .. 3788210 + -18.1  -2.50016   CCCGCGCTCGGCCCG C-TAGAGCGCCGAGCGTGAA ATCTGG TTCACGCTCGGCACTCTAAG ATCTTGATCGTCAAG  85 22
   Rru_A3293 NONE
   Rru_A3294 NONE
   Rru_A3295 3791930 .. 3791941 +  -2.2  -2.75712   CCAAGTGACGGCATC                GATG GATA CGTC                 TCCTTCCATCGATCA  39 33
   Rru_A3296 3793935 .. 3793948 +  -3.8  -2.90075   CGTTTGCCTGAAAAA               TCGG CAAAAC CCGA                TCTCCTTCCAGGCCG  42 77
   Rru_A3297 NONE
   Rru_A3298 3795156 .. 3795205 + -14.4  -2.53255   CGGCGTGGTCTTTCC CGGCTAGAGCAATTGGCGTGAA ACGCGG TTCACGCCAATTGCTCCGGGGG CTTGCTCCCTCTTCT  76 19
   Rru_A3300 NONE
   Rru_A3301 NONE
   Rru_A3302 3802076 .. 3802090 +  -2.8    -3.794   CATTCTCCAATAGCG               CGATAA ACT TTTTCG               TTTCCTCCGTTCAAG  52 28
   Rru_A3303 3803452 .. 3803480 +   -16  -3.27475   CCTAAGCGCCCCTCC       CCCGGGGTGTCGG CCAA CCGGC-CCCCGGG        TCTTGTCCTACCCCC  89 45
   Rru_A3304 NONE
   Rru_A3305 NONE
   Rru_A3306 NONE
   Rru_A3307 3806833 .. 3806861 + -18.2  -4.18018   CTGAACAAACGAAAA       CCCCGCCGGACCC GAAA GGGTC-GGCGGGG        TTTTCAATGCGCAAA 100 45
   Rru_A3308 3814125 .. 3814139 +  -7.8  -2.78384   CAGGGATAAGCCATT               CGAGGG ATA TCCTCG               TATAATCACAGAAAA  53 32
   Rru_A3309 3815299 .. 3815327 +  -2.9  -3.92324   GGAGCGAAGGCGGGC        GAAGTGGCCGGGC TTG GTCCGGATACGGC        TTTGGTCTTCGAAGA  58 392
   Rru_A3317 3827575 .. 3827596 + -15.9  -5.60993   TTGCCGCCATGAGCC           TCCCCGGAC CCGC GTCCGGGGA            TTTTTTTATGCCGCC 100 69
   Rru_A3319 3830045 .. 3830062 +  -8.4  -3.24924   TCCGGGGATTGGCTT             TCGGGG GTCAAA CCCCGA              TGTTATCGATCAAGC  57 134
   Rru_A3327 3839487 .. 3839518 + -13.6  -2.77899   TTGCTCGAATTGAAA      ACGGCGCGCCTCCT TTGG GGGAGACGCGCCGC       TGATTCATAAACCAC  73 68
   Rru_A3329 3841858 .. 3841888 + -21.2  -5.61596   CGCCTCCACGAAAAA       CCGCCCGGCTCCTT CGC AAGGAACCGGGCGG       TTTTTTTATCGGGAT 100 57
   Rru_A3333 3846955 .. 3847003 + -16.8  -3.56244   TCTGATCGGCCTCGC CGATCCTTCCGCCGGCTCCCTCTT TCA AAG-GGGGGCCGGCGGGAGCG-CG CTTTTCTTCTTGTCC 100 50
   Rru_A3334 3848156 .. 3848173 +  -4.7   -3.1364   GGCCGCCGGCAGACT             GAGGCGG AAGG TCGCCCC              TTCGATGGTTCCGTC  47 55
   Rru_A3336 3849606 .. 3849633 +  -5.4  -2.64616   GCTTAAGGTTTCGTT        TCCCGCGCCCGG AGGT TCGGCCATGGGA         TCATGTCCGTCGGCC  46 35
   Rru_A3337 NONE
   Rru_A3338 3850571 .. 3850591 +  -6.1  -2.64416   AAGTGGGAAGGCAGA            GTAATGCTG CAA CAGCGTAAC            CTTATCCTCGCCATC  46 100
   Rru_A3339 NONE
        engB 3853085 .. 3853105 + -11.1   -4.3739   CGCCCCTCCGCCCAG            CGGCCGG CGGATGC CCGGCCG            TTTTCTCCGAAAGTC  93 49
   Rru_A3341 3854084 .. 3854138 +  -9.6  -3.91144   GATCCGGGCGAGCCG CTAGAGCGGCGA--G--CGGAAAAGTGG GTC CCGCTTTTCCGCGCCGTCGCCGCTCTAA TTTATAGACTCTCGA  73 22
   Rru_A3342 3855227 .. 3855248 +    -3  -2.62171   GATCTGGCTTCGCGC           CTCTGAAC AGGTCC GTTGAGAG            ATCTTTCCGCCTGTG  38 87
   Rru_A3343 3856015 .. 3856065 + -23.7  -3.06261   CCGGAAGTCTGCTTA GATTAAAGTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGACTTTGATC TATTCCCCCTTGCCG 100 20
   Rru_A3345 3859375 .. 3859394 + -11.4  -4.07568   CGCCTGACCGCCGGA            GGCG-CCCC CCC GGGGTCGCC            TTTTGGCCGGGCGGG  84 34
   Rru_A3346 NONE
   Rru_A3347 3862432 .. 3862456 +  -4.4  -3.69216   CCGAACTGAACCTCC         TCGATGCGGTCG CCG CGAC-GCAT-GA         TCTTTTCGGTCGAGA  55 98
   Rru_A3349 3864218 .. 3864265 +  -8.2  -3.92542   CCAACGGCGCGATCC GACGGCCGCGGCTTTGCCGACCA TTC TTGACGG-ATGGGCGCGGCCGGC TTATTTCCGACTCAG  69 63
   Rru_A3350 NONE
   Rru_A3351 3865753 .. 3865774 +  -4.4  -3.14522   GCCTTTCCCGCCGGC           CTATCGCT GACCTA GGCGATGG            TTCGCTATCGCTTGA  48 11
   Rru_A3352 NONE
   Rru_A3353 3866941 .. 3866964 +  -6.6  -3.83502   GCCCCTCGTCGTCGC          ACTCCGATCC AGAG GGCTCGGAGG           TTTGCTCTAGCCGTA  63 42
   Rru_A3357 NONE
   Rru_A3358 3871868 .. 3871915 +   -14  -2.62184   GCCAGCCCGCCGACA GCTGCCGCGCCCGCCGATAGCCA AGA TGGCGG-CGGCGGGCGGCGAAGC TGGTATCGACGGGCA  72 134
   Rru_A3365 NONE
        cobN NONE
   Rru_A3367 3884936 .. 3884949 +  -5.9  -3.03124   GTTCGACCAGCCGCC               CGGCC TTGA GGTCG                TCTTCAACCATCACC  49 195
   Rru_A3369 3886092 .. 3886102 +  -8.2  -3.40597   CCCGTTCTTCGGCTT                 GGCC CCG GGCC                 TGTTTCGGTAAGGCG  59 92
   Rru_A3370 3887083 .. 3887095 +  -4.7  -2.75074   CAATCGGGGATCAGC                ACGGC CTT GCCGA                TGATCTTGCGCTCCC  43 51
   Rru_A3372 3888795 .. 3888810 +  -3.9   -3.6502   AACCACGGGTTGACG              CGGGC CCTCTC GCCTG               TTTGCATGGCGCCTC  51 39
   Rru_A3373 3889517 .. 3889551 +  -8.5  -2.72511   TAAAGCCAGCGGATC    CCGCTAGGCGGCGATC ACCC GGTTGCGGCC-GGCGG     ATTTGGCCCGATACA  53 106
   Rru_A3377 3894187 .. 3894219 +  -4.2  -4.87803   TGATAGTCAAGAAAA     TCGTCGTCGCGATCTG GTC CAGATCGCT-CGG-GA     TTTTCTTTAGCAGTC  81 88
   Rru_A3379 3896241 .. 3896261 +  -3.2  -4.67038   CGGGCTTTTCCTTTT           G-CCCAGGG CTTT CCCTCGGAC            TTTTCGTTTTGCCAA  70 113
   Rru_A3380 NONE
   Rru_A3381 3898996 .. 3899006 +  -8.2  -2.57132   TAGGGTTCGTCGCGC                 GGCG CCT CGCC                 CTTATAAACGCGCGG  52 189
   Rru_A3383 NONE
   Rru_A3384 3902246 .. 3902268 + -15.6  -2.90496   CGGCGGGGTGAGGTC           GGCGGCCAAG GGG CTTGGCCGTC           TGGTTTCGCGGGAGC  81 99
   Rru_A3385 3903229 .. 3903239 +  -2.4   -5.3104   CGACGGACCATGATG                 CCGG GCG CCGC                 TTTTCTTTTTCCTGC  85 233
   Rru_A3386 NONE
   Rru_A3387 NONE
   Rru_A3388 3906004 .. 3906022 +  -8.1    -3.695   CGGCCTCTTCAGCTT            CGCCGCCG TCAT CGGC-GCG             TTTGGCCTCTTTGGC  63 91
   Rru_A3393 NONE
   Rru_A3395 3913458 .. 3913469 +  -4.4   -4.1822   GACAATCCCCGGACG                TCCT GCCC AGGA                 TTTCTTCGCCTGCCA  65 109
   Rru_A3396 NONE
   Rru_A3397 3914376 .. 3914388 +  -9.1  -2.84098   CCGCCCCCCGAACCC                GGTCG CCC CGACC                TGCTTCATTGAGGCC  59 2
   Rru_A3399 3915773 .. 3915795 +  -3.2  -3.61398   CAACGCCTGAAACCC           GCCCCGCCCT GGA AGTGCGTGCC           TTATTCAGACACCGG  51 31
   Rru_A3400 NONE
   Rru_A3401 3917906 .. 3917931 +  -3.1  -3.04799   CACGCATGACGACGA         GGTAGGCGATG GCTG CTTCCCCTTCC          TCTTCGGCCGTTCTG  43 21
   Rru_A3402 NONE
   Rru_A3403 NONE
   Rru_A3404 3921714 .. 3921746 +  -3.4  -3.26031   CGAAGGGTTTTCATC     GG-C-GTCCTCGCATG CCA TATGCGGGGTCTGACC     TGTGTTTCCCCTCCC  45 59
   Rru_A3405 NONE
   Rru_A3406 3923803 .. 3923815 +  -4.7  -3.56972   GCGCTCCGCCGACCC                GCGCC AAA GCCGC                TTGGTTTGGTGCGCT  54 53
   Rru_A3407 3925259 .. 3925273 +  -3.5  -3.53012   GAATCGCCCCCGACC               GGAGG AAAGA TCTCC               TTTGGCCGGGGGCGA  51 52
   Rru_A3409 3927435 .. 3927484 + -13.3  -3.05844   CGCCGCGCTAAGACG GGACCAGCCACCCAGGCGGGAAC CCGC GCCCCCGCCCGGGTGGGTGGGGC TCTTCAAGTCACCGC  76 112
   Rru_A3410 NONE
   Rru_A3411 3928272 .. 3928319 + -18.7  -4.49756   GCATCCGTATCGGTT TATTAGAGCATCGAGCGTGAA ATCGGG TTCACGCTCGATGCTCTAAGC TTTTGGTATTTAAGC 100 79
   Rru_A3421 3939195 .. 3939213 +  -6.6  -2.66316   GGTGAAGAAAGGGAC             GGGACCGT TTC GCGGTCGC             TGCTATGATGGCGAC  49 85
   Rru_A3422 NONE
   Rru_A3423 3941779 .. 3941803 +  -4.8  -4.34402   CTTCAAGACAAGTCT          CTCCCCGGCC TTTTC GGACGTGGGG          TTTTCGTGTAAGGCA  68 86
   Rru_A3424 NONE
   Rru_A3425 NONE
   Rru_A3426 3944582 .. 3944629 +  -9.6  -3.01924   GGGTCGCATAAGATC GCGGCGCTCTTGGCGCCGGCCC GACG GGGCCGCATAAAAGAGCGGCGC TCTTGGCGCCGGGTG  60 94
   Rru_A3427 NONE
   Rru_A3428 3946794 .. 3946840 + -20.5  -4.30576   GGGCGCGATGCCTGA TC-TAGGGCGGGGAGCGTGCAAT CAG ATT-CACGCTCCCCGTCCTACGA TTTTGATAGTCAAGC 100 93
   Rru_A3430 NONE
   Rru_A3431 NONE
   Rru_A3439 3962535 .. 3962570 +  -7.4  -4.07568   GGGCCGGCGGCCGAG    CCGTC-GTCCCCCTCGC TGC GCCAGGGGCCCCGGCGG    TTTTGGCGCCAGCGA  68 70
   Rru_A3450 3974629 .. 3974645 +  -2.1  -2.93853   CCGCGGACCCCAAGG              CGACGAC GCT GTGGACG              GTTTGCTTGCCCACC  40 65
   Rru_A3451 3975237 .. 3975253 +  -2.9  -2.91728   CATGATCTTAAGGAT              CGGGAGA CTC TTTCCCA              TGTCGTGTTCCCAGT  40 98
   Rru_A3452 3977592 .. 3977622 + -16.2  -2.52464   TTCCCGCCCGCGTGG      GCG-CGCTCCCCG CCTCCT CGGGGAGCGTCGC       TCCCTTCGCCCGAAA  78 265
   Rru_A3453 NONE
   Rru_A3454 NONE
   Rru_A3455 3980433 .. 3980457 +   -15  -4.09685   ATTGGCATCCATCGG         CCGGCG-GGCG CTGA CGCCGCGCCGG          TTTTCCCAGATCAAC  95 12
   Rru_A3456 3981578 .. 3981603 + -15.5    -5.252   GCCTTGACTTCGCCA         CGGACCGGC-TC GAC GATGCCGGTCCG         TTTTTTATCACGATC 100 57
   Rru_A3457 NONE
   Rru_A3458 NONE
   Rru_A3459 3983944 .. 3983958 +  -2.1  -2.62184   GGGCCGGATGGCTTA              C-ACCC TGAA GGGTAG               TCCTCTCCGCGACCC  38 90
   Rru_A3460 NONE
   Rru_A3461 3987513 .. 3987531 +    -3  -2.70268   CCATCCAGAGGTTGG             CTACCCCG GCG CGCAGTAG             GGTTTTTCATTACAA  39 98
   Rru_A3462 3988347 .. 3988382 + -21.3  -3.42768   TCCCCTGGTTTTTGA    CCCTATGGGTGGTGC CGGCGC GCGCCACCCATAGGG     TTGTCCAATTTTGAT 100 46
   Rru_A3463 3989182 .. 3989196 +  -8.6  -2.93207   TCCAGGCCTGCCGGT               GATCCT TTC AGGATC               TCTATCCGTAATGTT  55 192
   Rru_A3464 3989832 .. 3989843 +  -3.6  -2.74756   CAGTCTCTAAGCTCA                CCCT GTGC GGGG                 TGCTTACCGTGGTTT  41 31
   Rru_A3465 3991289 .. 3991311 +  -8.4  -3.52941   GGATGATGTCGCGGT           GGGTCTCCTT GCA AAGGATGCCC           TTGTCCTTGAGCTTT  62 212
   Rru_A3468 3993942 .. 3993998 + -13.1  -2.50016   TGACGCCGCACAAGG GGTAGAGCGGCG--GGCG-GAAAGGCAG ACAC CGGCCTTCCGCGCCATCGCCGCTCTACG ATCTTGATCGTCGGG  68 21
   Rru_A3475 4000106 .. 4000143 +  -7.5  -3.07994   CACAAAGCAAGCAGG   GCGATGC-CGGCGCCACC CAG GCAGGCGCCGTGCAGGGC   TTCGATGCCGTTCGC  54 221
   Rru_A3477 4002109 .. 4002145 +  -2.9  -3.35046   GGTCGGAGTGTGCGG   CGGCGGC-AGCGAC AGACTGAAGC GCCCCTTGCCGCCG    TGTTTGGCGGCATAC  44 6
        dapD 4004947 .. 4004971 +    -2  -2.70994   ATACCCCGCGCTGAA          GGCCCGCGTT GAAGG AACGTCCGCC          CTTGTCTGCGCTTCC  39 27
   Rru_A3480 NONE
   Rru_A3481 NONE
   Rru_A3482 NONE
   Rru_A3483 NONE
   Rru_A3484 4010349 .. 4010363 +  -5.6  -4.08767   CCTTGGCCCGGTCCA               TCGGCA ACT TGCCGC               TTTTCACCGCCTGGG  64 235
   Rru_A3486 4012253 .. 4012270 +  -6.9  -4.07885   CGACATCCCTGGCCT             TCGGCCC GTAG GGGGCGA              TTTTGACCGAAAATC  68 71
        thrS NONE
   Rru_A3488 4015038 .. 4015062 + -18.6  -3.32022   GCCTAAAATACACGA          GGGGCCGTCC CGCCA GGACGGCCCC          TTGGTGTATCGGCAG  95 105
   Rru_A3493 NONE
   Rru_A3494 4023431 .. 4023451 +  -4.5  -3.00298   TCACAATTTTCCCCT            CCCTTGGCC GGC GTCCTGGGG            TGTATGGTTCCCGCC  46 293
   Rru_A3495 4023921 .. 4023954 + -14.6  -3.14051   TATCAAGACGGTGGC     GCGCCGAGCGGGAA CCAAGC TTCCCGCTCGCTGC      TCTTGATCACAATCC  82 91
   Rru_A3497 NONE
   Rru_A3498 4027659 .. 4027699 +  -2.3  -3.80855   GAGCCAAGCTGGCGA  TCTGGGTCTCCGAACGGGT CTG ACGCCCCCGGCGACCGAGA  TTAGTTTTTGGCGCG  52 3
   Rru_A3502 4030502 .. 4030537 +  -6.6  -3.98745   GACCCCCCGTCCGGC    CAGCCCTG-GGCCGGCC CTG GGCCAGCCGCCGCGCCG    TTCTTTGGATGATTG  65 39
   Rru_A3503 4031464 .. 4031485 +  -2.9  -3.63627   CCCGGCGCCACAAGA           TCG-CCGGTC CCC GGGCGGACGA           TTTCCAATATCACCC  53 479
   Rru_A3511 4042492 .. 4042527 + -10.4  -5.42259   GAGACGACGACCCGC    TAACGAAGGGCCCC CTGAGCGC GGGGCCCTTCGCTC     TTTTTTTCCCGCTGG 100 39
   Rru_A3512 4043620 .. 4043647 +  -9.1  -3.57144   ATGGCTTGACCAATG        CCGGCGAGGGCG TCGAC CGCC-TCGCGGG        TTTCGGCCTGGACGG  64 332
   Rru_A3514 4047994 .. 4048007 +  -8.1  -3.14132   GGCATCGCCGCCTCG               TGGGC CGAG GCCCA                TTAATCACCCGGGGC  57 8
   Rru_A3515 NONE
   Rru_A3516 4049305 .. 4049362 + -10.5  -2.78384   AAGAAGGCGCCGTCA TAGACGCCGCTCGCCGTGCG-CAGGGCG CCGGC CGCCCAGGCG-GCGGTG-GCGGCGCCGA TCTGGTGGGCGGCGG  57 160
   Rru_A3521 4053632 .. 4053644 +  -6.2  -3.80733   GAAGTTCATGCCTTA                CGGC TGATC GCCG                TTCTTCTGGCATAAA  60 19
        rplT 4054121 .. 4054146 + -19.7  -5.06414   CGCTAACGGACCAAA         CGGGGGTCGCC ACGG GGCGGCCCCCG          TTTTTCTTGCGCCCG 100 76
        pheS NONE
        pheT 4057740 .. 4057785 + -16.9  -4.07568   CCGGATCGGAGAGGC CCTTAGAGGGGTGTGGGTGAC CTAT GTCGCTCACACCCCTCTTGGA TTTTCACAGGGGAGC 100 55
   Rru_A3530 4063171 .. 4063186 +    -6  -3.53811   CCATCCTGGGCCACC              GCCGGG CGCA CCCGGG               TTTCCAGCAGATCGC  56 164
   Rru_A3536 4068058 .. 4068071 +  -5.9  -3.53224   GGAATGGGTAATTTC               CGGCC TACA GGCTG                TTTCAGAGCGACGTA  55 71
   Rru_A3537 4068820 .. 4068836 +  -3.5  -3.16742   GCCGATGGAGGATGA              CGCCAAG CAG CAGGGCG              TTCATCCAGCTTGAA  45 285
   Rru_A3540 4073710 .. 4073724 +  -9.2  -3.21276   CGACCCGGCCGGTAT               GGTGGG AAG CCCGCC               TGTTCTAAAACGGGC  61 84
   Rru_A3542 NONE
   Rru_A3543 4080679 .. 4080706 +  -3.9  -3.11634   CGGCTTAAGGGGGCG        AGGCTGGCGTC TTTTGC GTCGCCCGCCG         TTCGATGCTATGAGA  43 33
   Rru_A3544 4081534 .. 4081555 +  -2.2   -2.9058   AGAACGGATAACCGA           GACCTTGG AAACCA TCACGGTC            GTTCTGTTCTTGCTG  40 73
   Rru_A3545 4083260 .. 4083283 + -10.3  -3.01791   TCGGCCGTTGGTGGT          GGTC-CCCGC CTTTC GCGGGTGACC          TGTTGGCGCGCGCCT  64 107
   Rru_A3546 NONE
   Rru_A3547 4086248 .. 4086274 +  -6.6  -2.52464   GCTTGCCCCGCCCCC        TTTCCTCGCCG GGAACG CGGCG-GGAGA         TCCGTTGCGCGGGAG  48 196
   Rru_A3548 4087910 .. 4087957 + -27.8  -3.69094   AAGATCTAAGGACGG TCCCCGCCCCCCCGGCCTCGC CAAAAAA GCG-GGCCGGGGGGGCGGGAA TTTGCATGATCGCTT 100 32
   Rru_A3549 4089633 .. 4089660 +  -4.8  -3.54424   CCGCTGAGCGGAGGG        GGCGAT-GACCGA TGA TCCGACGATCGCC        TTTCAGCGGCTGAAA  52 34
   Rru_A3550 NONE
   Rru_A3551 4092153 .. 4092200 +  -7.6  -3.72576   CCGCCTGATCAACGC CAATCGTGTTAAAGGGGGCCCG CTTG CACGCCCCCTTTAACGCAAAGG TTTGATCCAGGCCAG  67 33
   Rru_A3556 4096649 .. 4096692 +  -4.6   -4.1552   GAACGAGACGGGAGA GCCGGGATGATCCTATCGG CGAGTTA CCGCTGCGAT-ATTCCGGC TTTCTTCGGCCCGTG  65 80
   Rru_A3557 NONE
   Rru_A3558 4098568 .. 4098588 + -18.3  -5.33405   ACCTTTCAAGGATCA            GGCCCGGGA CCC TCCCGGGCC            TTTTTCTTTGGTCGC 100 55
   Rru_A3562 4105561 .. 4105587 + -15.2  -4.39571   GAGGGCGCGGCGGCG         GGGCTCTTCCCT TAT AGGAAAGAGCCC         TTTTGCGTTTGTGCC 100 57
   Rru_A3564 4108897 .. 4108930 + -13.9  -4.35483   TGATCGTCACGCAAA     TCGCCGTCGCCCTCTG GGT CAGAGGGCT-CGGTGA     TTTGTTCTCATCGGC 100 79
   Rru_A3569 NONE
   Rru_A3570 NONE
        gpsA 4117223 .. 4117238 + -11.8  -3.32727   CTGCCGCTCTCCCCT              CCCGCC GCCC GGCGGG               TTGGTATGCTGTTCC  72 171
   Rru_A3572 NONE
   Rru_A3573 4118047 .. 4118058 +  -3.6  -3.55444   GGGGGCTGATCCGCG                GCCT GGGC GGGC                 TTTAGCCCATGGCCG  49 9
   Rru_A3574 NONE
   Rru_A3575 4120480 .. 4120503 + -17.4  -4.18197   ACCCAAGCAGGCGAG          GGGCCGGGCG GCAA CGTCCGGCCC           TTTTCGCTGACGGCT 100 57
   Rru_A3576 4121666 .. 4121680 +  -5.6  -4.07568   GCCGCCGCCCCCAGC               CGCCAG CGA CTGGCC               TTTTCGCCGAGGAAA  64 85
   Rru_A3579 4123939 .. 4123974 + -16.9  -3.55563   CCAGGGCCAGCACCG    CCAGCCATTGGCCCG CCCCCT CGGGCCAGTGGGTGG     TTTCAAAGATCAGGT  89 287
   Rru_A3582 4125490 .. 4125512 +  -9.8  -4.62203   GACGACTAAATGACT           GGGCGGTGAT AGG GTCACCTCCC           TTTTCCTTATTTCAG  89 32
   Rru_A3583 4127551 .. 4127568 +  -8.3  -3.73968   ATTTCACTCAGGGCT             CGGGCGG AGCG CCGACCG              TTTCCTCGGCGATTT  67 51
   Rru_A3588 4132456 .. 4132470 +  -8.5  -2.63785   GGATCGTCCATCTGG               CCGGC TGATC GCCGG               GTGCTTTTTTAAGTT  52 18
   Rru_A3589 4134089 .. 4134123 + -12.2  -2.52516   CGCGACGGCCCTCCC    CATCGGCGCCCATCC GGGGTA GGCTGGGCGCC-ATG     CTTGATCGTCGCCCC  68 50
   Rru_A3590 4134755 .. 4134770 +  -7.5  -4.18506   GCCCGGCCAACGCGG              GCGCC AAATAG GGCGC               TTGTTTTAGAAATAC  71 15
   Rru_A3598 4140316 .. 4140345 +  -9.9  -4.67556   GTGTTTTCACCCGCC       CCTCCGACGCC CCTTGACC GGCGACGGGGG        TTTTTCCCATGTTGT  89 160
   Rru_A3599 NONE
        hslU 4142786 .. 4142808 +    -9  -3.14132   CATACAGCGCCCCTT           CGCCGCCATG GCG CGGGGTGGCG           TTGATGAAGCCCACG  59 469
   Rru_A3609 NONE
   Rru_A3610 4150379 .. 4150424 + -14.7  -2.50016   CTTCTCCTCTCCCGG GTTGGAGCGGTGCGTGGGA CATCTGGT TCCCCCACACCGCTCCACC ATCTTGATCGTCAAG  76 42
        hemE 4155775 .. 4155813 + -25.4  -3.06009   GTCCGAGAGGTATAT   CGGTCGTTTTCCAGCCCC TGG GGGGCTGGAAGGCGGCCG   TCTTGGACCCTTTTC 100 73
   Rru_A3617 NONE
   Rru_A3618 4157531 .. 4157547 +  -3.5   -4.8622   TAAAGCCGTTTTAAC              CCCGGGG TTT CACAGGG              TTTTTCGTTACCAAA  74 27
         rho 4159196 .. 4159228 + -25.7  -5.95539   TCGCTTTTAAAATTT      GGGGCTCCCTGCAGA CTG TCTGCAGGGGGCCCC      TTTTTTTGTTTCACG 100 53
   Rru_A3623 4163313 .. 4163336 +  -2.2  -3.49618   CGCAAACCTCAGGAA          TAGGGCGGCC CCGC GGCCGCGACA           TTGGTTCTATGACCG  47 23
        trmE NONE
   Rru_A3625 4166658 .. 4166685 +  -3.4    -5.243   GGAAGAGTGTTTCAC        GTGAAACAGTTGG CCG CCGAC-GTTGCGC        TTTTTTCCTGGTTTG  84 22
   Rru_A3626 NONE
   Rru_A3627 NONE
   Rru_A3628 4169598 .. 4169621 +  -2.3  -3.57144   TGACCAGCGCTGAAC          TTGGCTGCG GAATCG CGGGGCCAG           TTTGAACATCACCGG  48 493
   Rru_A3634 4176127 .. 4176146 +  -7.8  -3.28712   TGGCGCTGCCGGCGC            CGACAACC ACCG GGTCGTCG             TTATGACCAAGCACG  56 162
   Rru_A3638 4180450 .. 4180478 +  -5.2  -4.08767   CACCATTTCCTCGGC       GCGCTGGCGGCGG TCAA TCGCCG-TGGTGC        TTTTCAGGCCGTGAC  64 244
        hrcA 4184056 .. 4184066 +  -4.6  -3.90291   TCAGCCGGATGATCG                 GCTG AAG CGGC                 TTTCCTTGAAACCCT  59 21
   Rru_A3643 4184864 .. 4184891 + -17.7  -5.03314   TCGGCTTGATCGACA        GCGGCGGGCGC AAACCA GCGTCCGCCGC         TTTTTTCGCCCTCAG 100 115
   Rru_A3646 4187054 .. 4187080 +  -5.1  -2.82516   GCAGGGTGACGAAGG        CCATGCG-CGCC TGAC GGGGATGCATGG         TGTCGTAATCGACCA  46 272
   Rru_A3648 4188477 .. 4188505 + -19.1  -3.83205   TCTAGATCAAAGTTT        CTGCGTTAAAGGA GAC TCCTTTAACGCAG        TTTGATCTAGGGCCT 100 111
   Rru_A3651 NONE
   Rru_A3652 NONE
   Rru_A3653 4193835 .. 4193882 +  -8.4   -3.1552   GGGCGAAGCGCATTC TCTTCGAGCGGCGTGGGTGA AATCTGCC TCAGGCACGCCGCTCTGGGA TCTTGATCGGTAAGC  57 63
   Rru_A3664 4210707 .. 4210718 +  -4.4   -3.1372   CCGGAGGGATATCTC                CCTA GCGT TAGG                 TATTCATCCGGGGTC  48 126
   Rru_A3665 4212818 .. 4212857 +   -12  -2.70932   GTCTTCTGGGGGGGG  CGCCGTCCCGC-CGCCGGC ATG GCTGGCGAGCGGGGTACCG  TCGTTGGCGACCAGC  62 388
   Rru_A3667 NONE
   Rru_A3668 4215252 .. 4215298 + -10.1  -2.95904   AATATCCCGATAGGA GGGCGACTCGTCGTCGCGTGCTG GTC CGGCGCACT-CG-CGAGTCGTCC TAGATTTTTTCCTTG  62 39
   Rru_A3670 4217752 .. 4217787 + -23.4  -3.01712   AAGGGTCCCCCACAA    GAAAACGGCCGGCGGG ATGC CCCACCGGCCGTTTTC     TGTTCAAGGAAGGCG 100 39
   Rru_A3681 4229849 .. 4229859 +  -2.4  -3.17075   TCTTTTAGGAGGATC                 GGTC ATG GCCC                 TTCCCTTCGGCGACG  43 49
   Rru_A3682 NONE
   Rru_A3683 4231141 .. 4231151 +  -8.2  -2.78384   GGTGGTGACCGCCCG                 CCCG CCC CGGG                 TATGGTCAAGGCAGG  52 156
   Rru_A3686 4234465 .. 4234507 +  -6.9  -3.72576   GGGCGGGGGGATGGG C-GCGCCTGGGACGGCGGCCC TCA GGG-CGTTTTGCCGGGCGCCG TTTGGTCAAGCGCCA  63 55
   Rru_A3694 4240625 .. 4240646 +  -7.2   -3.1352   CGGATACTAAAAAAG           CCCTGGGG ATAAAA CCCCAGGC            TGTATTGCATTCACG  54 31
   Rru_A3695 4242740 .. 4242750 +  -8.2  -4.16016   CGAACTGGCGGGATA                 GGGC TTA GCCC                 TTTGTTGGCGGGTCG  75 25
   Rru_A3702 NONE
   Rru_A3703 4252384 .. 4252399 +  -2.5  -3.59946   CGAAGGAGATCTCCT              CGATG ATCGCA CGTCG               TTGTCTGCTTGCCGC  49 88
   Rru_A3704 4253360 .. 4253390 + -15.4  -5.07486   GGACGGTGCGTTTTC       CCCCGCGTCTGG CAAGCCT CCGGGCGCGGGG       TTTTTCTTACAGATC 100 49
   Rru_A3707 4258880 .. 4258892 +  -9.1  -2.79183   CAACGAGGGCGAATT                TCGCC CAC GGCGA                TGTGCTCCAGGTCGC  55 179
   Rru_A3712 4263152 .. 4263173 +  -4.4  -4.76312   ATGCGCCGAAGGCGC           GCGGTCACG CGCCC CG-GATCGC           TTTTTCCGTGTTATC  78 41
   Rru_A3713 4264021 .. 4264040 +  -2.2  -4.37886   GTACGATCTGCCCGA            GTCTTA GAAAGAGA TAAGAC             TTTTGTCGGGGGTAG  63 147
   Rru_A3714 4264460 .. 4264479 +  -7.2  -3.08032   ATGAATTGAACGGGG            CTCTTTAC CCGG GTAGAGAG             TGGTTTTCGAAACGC  52 42
   Rru_A3715 NONE
   Rru_A3716 NONE
   Rru_A3717 NONE
   Rru_A3718 NONE
   Rru_A3719 NONE
   Rru_A3720 NONE
   Rru_A3721 4272938 .. 4272948 +  -2.4  -4.24002   GCTCGCCGGGCTGAT                 CGCC GCC GCCG                 TTTTGGCGTTTCCCG  60 27
   Rru_A3722 4273880 .. 4273934 +  -3.5  -3.06515   GCCGGTCGCGCCCTG ACCCCGG-CCG-GCCTTGCCCG-CCCT GGCGG AGGGACGGGC-GGGCGCGATCCGTGGA ATTTTCCCGATAACA  43 25
   Rru_A3723 4276124 .. 4276149 +  -8.9  -2.59569   CCGGGAGGTTCGGTC         ATCGGACCCCT CGAT GGGGGTCCGGG          CTGTTCGTTTCACGC  56 198
   Rru_A3724 NONE
   Rru_A3725 NONE
   Rru_A3726 NONE
   Rru_A3727 4279774 .. 4279807 +  -2.9  -3.41051   TCGAAGACCGCGAGC     TGACGTCGTTTGGCC GCAA GGGCTGACGGCGGCG      TTCTCCTCCCACTGA  44 0
   Rru_A3728 4281033 .. 4281071 + -15.9  -3.71527   CGGGCTTCGCCCGTC  GTCGCGCCCCGGGCCGGG ATGG TCCGACCCGGGGCG-GCC   TTTCCGTCGTTGCGC  95 46
   Rru_A3729 4281907 .. 4281919 +  -6.9  -3.91911   CAGTTACGGGGATTT                TCGGC GGC GCCGG                TTTGCTTGGCGTCGC  65 41
   Rru_A3730 4282480 .. 4282524 +    -2  -3.67052   CATCGACGACCAGGA GTAGCTGGCGGAAAAGGGAACC TTG GGTGTCCTTG-CCGCC-GCCCC TTGTCTTCAAAGTCT  49 22
   Rru_A3731 4283327 .. 4283368 +  -8.7  -3.53343   GCCCGCCAACCGCCT TGGCC-TGGGCGTCATTGAC ATG GTTGGTGGCGCCGGCGGCCA TTTCCAGGCCGCCTT  62 99
   Rru_A3734 4285383 .. 4285399 + -13.7  -3.05498   GGGGGGGGCTTGCCG              GGCGGCA AGA TGCCGCC              TATCTATATGGCATG  76 41
   Rru_A3735 4285856 .. 4285879 +  -4.4  -2.62933   ATCCTGGGCAAGATC          GCCTGGGGCG CGGC CGCCTGATGC           TGCTCTGGCGCCTTG  43 5
   Rru_A3736 4286355 .. 4286365 +  -6.8  -2.83822   GAGAGCTATACCGTG                 CGCA GCG TGCG                 TCCTTGTCGGCTCGC  51 43
   Rru_A3737 4288173 .. 4288189 +  -2.9  -3.33261   GGGCGGGCAGGCCAA              GGGGC ACCAGAC GCTCC              TTGTCGCCCTTGCCG  46 436
   Rru_A3740 NONE
        aroB NONE
   Rru_A3742 4293260 .. 4293276 +  -7.9  -2.86164   CTGCCCGACGAGACG              GCGGCGA CCC TCGCCGG              TCTGGTGATTCGCGA  55 1
   Rru_A3743 4293449 .. 4293461 +  -3.3  -3.45005   GAAATATAGACCTTG                TCCAG ATC CTGGC                GTTTTCTTGGCTTTT  49 32
   Rru_A3744 4294047 .. 4294075 + -15.3  -4.40561   TTCTTTTTTGGCACG        GGCAAGTCGGGGC GGC GCTTCGGCTTGCC        TTGTTTTTGGAGCAC 100 54
   Rru_A3745 4294668 .. 4294688 +  -2.5  -3.35813   AAACAGGGCCGGCGG            GTGAGGG ATTGGCG CCCTTGC            TTCCTTGCCATCCCC  44 22
   Rru_A3746 NONE
   Rru_A3747 NONE
   Rru_A3748 4297325 .. 4297338 +  -3.7  -2.73364   CGTCTAAGGACTATT               GGCCG ATCT CGGCA                TCGTTGAGGTCGGCC  41 34
   Rru_A3749 NONE
   Rru_A3750 4299223 .. 4299238 +  -2.4  -5.54079   CCCCGATGACCTTGT              CCGGCG CGTT CCTCGG               TTTTTTGCTTTTTCC  88 32
   Rru_A3751 4300567 .. 4300586 +   -15  -3.83026   CCAGACTTAAGCAAA            GGCCCCTC TCGC GAGGGGCC             TTTCGTCTGACCGGG  93 57
   Rru_A3752 4301477 .. 4301501 +  -7.7  -3.18264   GCAGGAATGCTTCGC          GGTCCACTAGC GCC GCGTGTGGGCC          TTGCTCGGTCAAGGC  54 403
   Rru_A3756 4309121 .. 4309145 +  -9.2  -4.62772   CGGGAGGGGGGGCGG         GCGGCGGGCCG TGAG CGGCCC-CCTC          TTTGTTTGATTTCCG  85 12
   Rru_A3757 4309793 .. 4309805 +  -6.9  -3.72051   GCAAAAAGCCCAGGG                GCCGG GCC CTGGC                TTTCGCCTTCTTCCC  61 349
   Rru_A3760 4311710 .. 4311720 +  -2.4  -2.78463   AGACGAGGGGGAATG                 CGCC GCC GTCG                 TCTGATCCCGCCCCT  39 10
   Rru_A3761 4313220 .. 4313266 +  -8.4  -2.57132   CCATGCGATCCCCCC GCCCGGGGAAACGTCGTCATCG GCC CGAAGGCAAGGGGACCCCGGGC ATTGTGGAGCCAAAG  52 91
   Rru_A3762 NONE
   Rru_A3763 NONE
   Rru_A3764 4315066 .. 4315093 +  -4.3  -4.52857   GCAAGGGGCGTAAAA       GGCC-GAAAACAC CTCG GT-TTTTCAGGCC        TTTTGTATGACCAAT  70 28
   Rru_A3766 4315892 .. 4315918 + -14.4  -4.07568   CTATCGTTTCCGCAA         GGCGTCGTGGTG CCA TGCCGCGACGCC         TTTTCAACACGACCG  95 56
   Rru_A3767 4316420 .. 4316449 +  -8.6  -2.91452   AGGGCGGAAGCGTCG      T-CCGCGCGCCGGT CGGG GCCG-CGCGCGGCA       TATCGTTGGGGTGCT  55 40
   Rru_A3768 NONE
   Rru_A3769 4318199 .. 4318219 +  -8.1  -3.06183   GGTCGCGGTCAAAAC            GGTCGCGCC GCC GGCGGGCCC            TTGACTCGCGGTCCG  56 1
   Rru_A3770 NONE
   Rru_A3771 NONE
   Rru_A3772 NONE
   Rru_A3773 NONE
   Rru_A3774 4323851 .. 4323862 +  -2.2  -4.13014   ACCCTTATAAGGGCT                GATG ATAC CGTC                 TTTTGGCGGTGTGGA  57 76
   Rru_A3775 4324622 .. 4324636 +    -7  -3.17075   ACTGATCGGGGGCTC               GGGGTG CCT CTCCCC               TTGCCTTCCCAGGGC  54 56
   Rru_A3776 NONE
        trmB 4326673 .. 4326686 +  -2.3  -3.29144   ACAATCCTTGAGATT               GGTCG AAAC TGGCC                TTATAAAGACCGTGA  44 30
   Rru_A3778 NONE
        nusA NONE
   Rru_A3780 4329856 .. 4329874 +    -8  -4.25104   ACAGGCGATGCGAAG             CCGCGGCG AGA TGCCCCGG             TTTTGGTCGCGAAGG  75 99
        infB 4332622 .. 4332677 + -19.1  -4.07885   CCTTGCGGGGTGGAA CAGGTCCGCCGGC-CGGAA-G-CGGGGC ATC GCCCTGGCCTTCCGCGCCGGCGGAACAG TTTTAACAAGAGGTC 100 71
        rbfA NONE
        truB NONE
        rpsO 4334564 .. 4334594 + -15.5  -4.27316   AAGTAAGTCGGGTCA      CCGGGCAG-GACGT CAAG GCGTCGCTGCCCGG       TTTTCCATTCAGGCC 100 35
   Rru_A3785 NONE
   Rru_A3786 NONE
   Rru_A3787 NONE
   Rru_A3788 4339963 .. 4339988 +  -8.2  -4.02132   GGCTTTAGAGCCCGA         GGTGCGGCGG CCAATC CCGCCGGATC          TTTATCCGTTTCCGG  71 79
   Rru_A3790 NONE
   Rru_A3799 4350490 .. 4350509 +  -2.8  -2.62263   ACCTTTTTCTGCGGG            CGTCGTCA GCGG TGATGGTG             TAGTCTCCGGCCCAT  38 11
   Rru_A3800 4350979 .. 4351004 + -11.1  -3.53012   TCCCTGGCCCCCGAC         GGCTGAGCCGC GCCA GCGGCTTACCC          TTTGGCGGCGGCCCC  74 20
   Rru_A3801 4351938 .. 4351983 +  -2.4  -5.09204   CATCCTATAAAGCCG CCCTTCCG-CGCGCTCTGGCT GTCCG GGCCGGAACGCGGCGGAACCC TTTTTCTTGAGATGT  78 91
   Rru_A3802 4352372 .. 4352382 +  -2.4  -3.94188   ACATGACCCCTTTCG                 GGGG TGG CGCC                 TTCTTTGGCATGGCT   0 116
   Rru_A3798 NONE
   Rru_A3797 4347068 .. 4347115 -  -6.9  -3.54459   GGAATTTCCGTGAAA TCGCGGCGGCGGTGGGCGTGAGG CTTG CTCCCCGCGCACCGCCG--GCAA TTCGAGAGTGAAGAA  58 122
   Rru_A3796 NONE
   Rru_A3795 NONE
   Rru_A3794 4343877 .. 4343912 - -26.2  -4.35926   ACGGCAAAGGGAAAA    CGGCGCGGACCCCCGG GTTA CCGGGAATCCGCGCCG     AGTTCAACAGCCACC 100 113
   Rru_A3793 NONE
   Rru_A3792 4342486 .. 4342529 -  -3.1  -4.64598   CAATGAGCGTAAAAA GA-GGGTGAACCACGCCT GTTACGTGT AGGCGTGGCCCTCTCATC CCCAGCCTCATACCA  70 47
   Rru_A3791 4341916 .. 4341932 -  -6.5  -3.39449   TCTGATCAACATCAA              GACCTTC GTC GATGGTC              ACAAGCCTCCCGACC  55 163
   Rru_A3789 4340013 .. 4340041 -  -8.8  -3.01712   TTCCGGGTTGGAAGA       TCCAGGTCCCGAG CGCC CCCGGGACC-GGT        GGGATTTTCTCGCCC  60 112
   Rru_A3765 4315066 .. 4315093 -  -4.8  -4.09739   GCAAGGGGCGTAAAA        GGCCGAAAACAC CTCG GTTTTTCAGGCC         TTTTGTATGACCAAT  61 19
   Rru_A3759 4309602 .. 4309613 -  -3.6  -3.60296   GATGGCCACGCCAAA                GCCC GCTC AGGC                 CGCCGAACTCGCCAG  51 20
   Rru_A3758 4309166 .. 4309199 -  -2.3  -4.08767   TTGATTTCCGCAAAA     CGCCGC-CCTCAAGAC CAT GGCTTGAACCGCCGCG     CACGCATACAAACAT  57 317
   Rru_A3755 NONE
   Rru_A3754 4305939 .. 4305958 -    -2  -3.64703   CCCGCTTGAGCGAAA            GGCGCC GAAGGGGT GTCGCC             GCTCAGTGCAGCGGC  49 28
   Rru_A3753 4300735 .. 4300746 -  -5.8  -2.52464   CCGTGGCCGAAGTGA                CCAG CGCC CTGG                 CCGACAACGGCTTTA  44 505
   Rru_A3739 NONE
   Rru_A3738 4287419 .. 4287429 -  -2.6  -4.34789   CAATCGATAAAATAA                 TAAA TTC TTTA                 TCTATTGCTAATTAT  65 368
   Rru_A3733 NONE
   Rru_A3732 4283115 .. 4283164 -  -4.8  -4.24948   CCACGATATCGAAAA CCTGGGGCTGGTG-GTCGAGGCAA TGCG CCGCCGCGACGCCCCGGCCGC-GG CCAATGCCATCGCCG  66 126
   Rru_A3711 NONE
   Rru_A3710 NONE
   Rru_A3709 4260067 .. 4260112 -  -4.6  -2.62184   CCGTCCTGGAGATCA TCGACG-CTTGGCCGCGCGGCG TAAT CGCC-CAGGACCAGGGCGGCGA TGATCCCGACAGGGC  43 48
   Rru_A3708 4258581 .. 4258623 -  -2.3  -2.90075   TGTTTTCCAATGATA TCGCCCCCGTCGCCCTCGC CCGCC GCCTGGGCATCGGCGCCGT CGAGCGCATGGGGCC  40 190
   Rru_A3706 NONE
   Rru_A3705 4253212 .. 4253230 -    -3  -3.56092   GCATCACCGCCGAAA             CCGGCG CGGTGAT CGGCGG             CACGCTTTACTCGGA  49 192
   Rru_A3701 NONE
   Rru_A3700 NONE
   Rru_A3699 4245438 .. 4245474 -  -5.1  -4.15222   AGGTGGCGTAATAAA   GAAGACCCGCCGCCAA CCGGCC CTGGCGG-GGCCCTCC    CGGGGAAGATCCCGG  65 95
   Rru_A3698 4244406 .. 4244441 - -16.1  -5.00616   CGGCCCCTTAAAAAA    CGTGACGCCCGGCAG GGGGGG CTGCCGGGCGTCTTG     TCTTCACCGATCGGT 100 242
   Rru_A3697 4243484 .. 4243510 -  -4.4  -2.70932   CCCGGCTTTCAACCA        GCC-GCGCC ACCTGATCCA GGCGCAGGC         GCAGCGAGTTGATGT  43 83
   Rru_A3696 4242313 .. 4242325 -  -4.7  -2.52543   ACTGGGTGGAATTGA                CCCCC CAC GGCGG                CATCGTCGTTTATGG  42 444
   Rru_A3693 NONE
   Rru_A3692 4238072 .. 4238086 -  -3.4  -3.30243   AGGGAGGGTTTACAA               GCCGAG TCG CCAGGC               GTCCTTGAGATGTCT  47 5
   Rru_A3691 4237300 .. 4237317 -  -2.6  -4.13767   TCCCCCAGCGCAAAA             GAGCCC AAGGCG GGGCTG              CTTGATCAACCGACG  57 109
   Rru_A3690 NONE
   Rru_A3689 NONE
   Rru_A3688 4235105 .. 4235126 -  -9.3   -4.1891   GCCCGGGAACATAAA           GGGCGGCGA TCAT CCGCCGTCC            CGCGCGCTGATCAGG  79 13
   Rru_A3687 4234261 .. 4234309 -  -8.9  -3.14564   CTATGCGCTCACCAA CGCCACCCTGCCCTATGGTCTGGC GATC GCCA--CCA-AGGGCTGGAAGGCG GCGCTGGCCGATGAT  56 201
   Rru_A3685 4232689 .. 4232703 -  -2.8  -2.62184   CCCCCGTCTATAGCA               TGGG TTAATCC CCCA               GGGGAAAGCCGGCGC  38 15
   Rru_A3684 4230999 .. 4231029 -  -8.9  -3.12351   GCCTTCCACATCGAA       GCCACGCGCTGAG GGGTT CTCAGCGCCCGTC       CAGGGCGGTGAGAAG  60 14
   Rru_A3680 NONE
   Rru_A3679 4226686 .. 4226705 -  -4.9  -3.56092   TTATTAGGGGCTAAA            TCGCCTG GGGGGA CGGGCGA             TGGTCAGCGCAGGCG  52 29
   Rru_A3678 4225417 .. 4225445 - -15.3  -2.50816   GCTCCACCGACGAAC       GGGCCGGTCGCG AAACCA CGCG-CCGGCCC        TGCGGGCAAGGCCCC  76 105
   Rru_A3677 4224658 .. 4224675 -  -4.1  -3.04792   GCAGCAGGGTGAAGA             TGATGAG GGCG CTCATCG              GCCGTCTCCCTTGCC  43 20
   Rru_A3676 4223332 .. 4223359 -   -17  -5.00616   GGCGGGCGGAAAAAA        GGGGACACCGGC CTTC GCCCGTGTCCCC         CTGATGGTGGCGGTT 100 56
   Rru_A3675 4222549 .. 4222580 - -15.2  -3.28712   GGGCCCGGCGCATAA      GGCCCGATC-TCCGA CCC TCGGTTGATCGGGCC      CGGCGACGCGGCCTG  86 44
   Rru_A3674 4222211 .. 4222225 -  -7.1  -2.64218   ACTCTCGATCACAAT               CCCTG GGTTA CAGGG               GGATCGTTCAACGCG  49 48
   Rru_A3673 4220882 .. 4220921 -  -9.3  -4.07568   GCGGCGGCCGGAAAA  GCCGATCGG-CGGACTAT AAGGG AAAGCCCGGCCGATCGGG  ATCGCTTATTTGACC  76 31
   Rru_A3672 NONE
   Rru_A3671 4217752 .. 4217787 - -25.6  -3.29043   AAGGGTCCCCCACAA    GAAAACGGCCGGCGGG ATGC CCCACCGGCCGTTTTC     TGTTCAAGGAAGGCG 100 45
   Rru_A3669 4214986 .. 4215011 - -10.3  -4.77036   GGTCAGCATGAAAAA         GCTGGCCGCCG TGTT CGGCGGCAAGG          CGGCCCATATGATGA 100 312
   Rru_A3666 4212094 .. 4212105 -  -3.6  -3.90112   CCCTGGCCAATCAAA                CCGC CCGG GCGA                 CCGAGGAAATCGGCG  59 366
   Rru_A3663 NONE
   Rru_A3662 4204484 .. 4204535 - -23.1   -3.4574   GGCACCACGAAAAAG CCGCG-CC-GCGACCGGGCGGCGCAG CGG CGGCGCC-CCCGGTCACGGGCCGCGG TCGGGCTGTCGTCAA 100 37
   Rru_A3661 4203237 .. 4203252 -  -8.2  -3.54919   AAGGACGGGGGGAAA              GGGCCG GGGT CAGCCC               CGGGGGGCGCGGGTC  62 19
   Rru_A3660 4201831 .. 4201874 - -12.2  -3.53224   CAGCGCGCCGGTAAA CCCGGGCCCGCGACGGCGGCG GCT CACCGCGG-CGCGTCCCCGCG AACCAGCCGGGCGAT  79 5
   Rru_A3659 NONE
   Rru_A3658 NONE
   Rru_A3657 NONE
   Rru_A3656 NONE
        purH 4194375 .. 4194428 - -12.3  -2.62184   TTTGCTTCGATATCA CTAGGTTAGGCCAGTGTGCGGGGAC TATG GTTCCCGCACACGGGCCTAATGGCG GAAGTGGCGCAAACC  68 17
   Rru_A3654 4193798 .. 4193822 -   -20  -3.81146   CTGCGCAACGAATAA          CCCCCCCGGG GGAGA CCCGGGGGGG          CGAAGCGCATTCTCT 100 142
   Rru_A3650 NONE
   Rru_A3649 4188035 .. 4188048 -  -2.3  -3.53091   ATCGCGCTGGCCAAA               CGGGT GGAA ACCCT                GGCCGGCCGCCTTGA  48 445
   Rru_A3647 4186747 .. 4186757 -  -4.6  -3.09327   CGATCGTATCGAAGA                 CGCC TGC GACG                 GGCTGGTCACCCGGC  47 89
   Rru_A3645 NONE
   Rru_A3644 4184781 .. 4184814 -  -2.3  -5.24531   ACCGTCTAGAAAAAA     TCTCCG-AGCGCTCTG GAC CAGAGTGCGACGACGA     TTTTCTTCACCATCC  83 114
         rph NONE
   Rru_A3640 NONE
   Rru_A3639 4180026 .. 4180059 -  -4.3  -4.21922   TGACCGAAAAGGAAA     CCGGCATCCTGGCCT TCCT ATGCCGGGCCGGCGG      CAAGGCGGTTGACCG  66 179
   Rru_A3637 4178084 .. 4178113 -  -4.2  -3.60316   ACGGGCGGAAAAAAC       CCCGAGGTGGGCA GGATA TGCCGATC-CGGG       CCGGCGCAAGGGGCA  54 87
   Rru_A3636 NONE
   Rru_A3635 4175493 .. 4175515 -  -9.8  -3.60296   GAGGCCCAGGGCAAA           TGGCCGGCCT TCA AGGCCGATCA           CGCCGATATCGATCT  67 497
   Rru_A3633 NONE
   Rru_A3632 4173653 .. 4173704 -  -4.9  -3.47029   TTAGCCAAACAGGAA GCGGGGCGGGC-CG-GACAGCG-GGG AGG CCGGCGCGGAGGCGCGCGCGCCCCGC GGGGAAAGGGTTACT  52 36
        leuS NONE
   Rru_A3630 4170487 .. 4170506 -  -3.4  -3.53091   ACGGGCGCGGCTAAA            GAACCCGG CCGG CCGGAGCC             GGGGCTTGCGAGAAA  49 1
        holA 4169400 .. 4169419 -  -4.8  -3.57418   CATTCACGAAAGCAA            GGGGGCGG ACAT CCGTCCCG             CGGATCGAGGCCAAG  54 51
   Rru_A3622 NONE
   Rru_A3621 NONE
   Rru_A3620 4159193 .. 4159231 -   -13  -4.08216   TTATCGCTTTTAAAA   TTTGGGGCTCCCTGCAGA CTG TCTGCAGGGGGCCCCTTT   TTTTGTTTCACGTGA  89 65
   Rru_A3615 4153356 .. 4153371 -  -5.4  -2.73468   GAACAGGGGGAACCA              GGGCGCT CAC AGC-CCC              TCGCCCCAGGGCGCG  46 16
   Rru_A3614 4152771 .. 4152781 -  -2.4  -3.48668   ATCATGACAGCAGAA                 CTCC ATG GGGG                 CGCAGGAAATCAAGC  47 1
        aroE NONE
   Rru_A3612 NONE
   Rru_A3611 4150488 .. 4150510 -    -4  -4.08767   GGGATTTGCTCAAAA           CGCCGGGAAA CTT TCTCCTGCCG           CCGTTGTTACGACGG  59 32
   Rru_A3608 NONE
   Rru_A3607 4147089 .. 4147104 - -11.8  -2.57931   CCCATTGGGCAGAAT              GGCCCG ATGG CGGGCC               TTTGACAAGAAATCC  64 46
   Rru_A3606 NONE
   Rru_A3605 NONE
   Rru_A3604 4144047 .. 4144090 -    -5  -2.51547   CCGCCAGATCAAGAT TTAGAGCGGTGTGCGGGAAC CCTG GTCGCCGCTCGCCGCTCCCC GACTCACCGCGGTCC  42 29
   Rru_A3603 NONE
   Rru_A3602 4142731 .. 4142744 -  -5.2  -3.53224   CAGGCGGGCGCCAAA               GGGC GTCATG GCCC                GGACTCGCGGCGACG  52 17
   Rru_A3601 4142344 .. 4142357 -  -8.1  -3.55444   GGTTCATCCTGTAAA               CCGGT GTAG ACCGG                GGAACCCCTATCGCG  62 33
        hisB 4138719 .. 4138733 -  -2.8  -4.11773   AAAGACCGTGGAAAA               TCGC ACCGATA GCGA               CCGTCTTCCGGCTGG  57 224
        hisH 4137958 .. 4137989 -  -3.6   -3.1634   GGGCAAAGGACGGAA      GGGCCGCGCG CAGGGCGGGGGT CACGGGGCCC       AGCGCAGGAAATTGG  45 15
   Rru_A3595 NONE
   Rru_A3594 NONE
        hisE NONE
   Rru_A3592 4135519 .. 4135568 -  -9.5  -3.01712   GTCCCCCCTCGAACA TCTTCGGCCG-GTCC-CCCGACAG GAAGT CT-CCGGGAGGACACAGCCAAAGA TGGTGAAGGCGAGGG  60 60
   Rru_A3591 4134504 .. 4134515 -  -7.2  -3.65522   GACCGAGGTCAAGAA                CGGC GTCG GCCG                 GGCCTTTTGGACGCT  61 286
   Rru_A3587 4130280 .. 4130296 -  -2.2  -3.41745   CGGCCACAAGACGAA              TGCGGT TGGTC ACGGCA              GGCGCTCCGCTGGAT  47 136
   Rru_A3586 4129227 .. 4129244 -  -6.2  -4.56597   CGGGTCCGGCAAAAA             CGCCCC TTTAGG GGGACG              AGGTGGCCGGGGGGC  74 15
   Rru_A3585 NONE
   Rru_A3584 4127467 .. 4127491 -  -9.2  -3.53012   CCCGCCGCCTGGAAA          GCTTCGCGCG GCGCT CGCGCGAGAC          CTTCGATGGTCCGCC  64 77
   Rru_A3581 NONE
   Rru_A3580 4123474 .. 4123486 - -10.5  -3.28785   CTTGAAAAGATCGAA                CGCGC CGC GCGCG                GCATCGAAAACCCCT  63 230
   Rru_A3578 4122484 .. 4122497 -  -3.7   -3.3676   GGGAAGATCCTAGAA               GTCGC TGCA GCGGC                CGTTGCGTTCCCAAT  47 6
   Rru_A3577 4121459 .. 4121478 -    -2  -3.68324   GACGGCCAAGAAAGA            GATGCTGC CCAT GCAGCTTG             GCGATGTGCCGGGCA  51 158
   Rru_A3568 NONE
   Rru_A3567 NONE
   Rru_A3566 NONE
   Rru_A3565 4108897 .. 4108930 - -11.7  -3.65351   TGATCGTCACGCAAA     TCGCCGTCGCCCTCTG GGT CAGAGGGCT-CGGTGA     TTTGTTCTCATCGGC  77 41
   Rru_A3563 4105195 .. 4105209 -  -2.8  -4.09739   CCAATCTGGTCAAAA               GCATCA TCA TGATGG               AAAGCACCATCAACG  59 442
   Rru_A3561 NONE
   Rru_A3560 4099459 .. 4099469 -  -6.8  -4.18018   CGCGTGTAGCCAAAA                 GTCG AGA CGAC                 GTCAACGGGGATTGG  71 27
   Rru_A3559 4098565 .. 4098591 - -12.2   -2.7185   ACCACCTTTCAAGGA         TCAGGCCCGGGA CCC TCCCGGGCCTTT         TTCTTTGGTCGCTTG  69 43
        dnaK 4094035 .. 4094063 - -21.8  -3.91473   AGAAAGGCGGAGAAA        CGGGGACCGGAG GAAAG CTCCGGTCCCCG        CCTGATATCCCCTTA 100 38
   Rru_A3554 4092732 .. 4092770 - -14.6  -3.64822   ACCGCCTGATCGAAA  CGCGACCGGCCCTCGCC TGGGCG GGCGAGAGCCGGTTG-G   TTTTATCAAAAAGGC  90 47
   Rru_A3553 4092318 .. 4092335 -  -4.7  -3.24021   GGCGTAAACATCGAA             GCGGGCC ATCA GAACCGC              TGATATTTGGCCAAA  48 16
   Rru_A3552 4092166 .. 4092187 -  -9.3  -3.55622   GCCAATCGTGTTAAA           GGGGGCCCG CTTG CACGCCCCC            TTTAACGCAAAGGTT  66 27
   Rru_A3541 4073735 .. 4073751 -  -3.6  -4.07568   CCGCCTGTTCTAAAA              CGGGCT TGCCC ATCCCG              TTTCCCTACTCCCGC  59 31
   Rru_A3539 4070125 .. 4070153 -  -4.4  -4.05788   GGCCTTGAAAGGAAA        CGGGGGCGGC GGCAGGCGA GCCTGCCCCG        GGAACGGAGTGTTTG  61 65
   Rru_A3538 4068386 .. 4068435 - -10.5  -3.08679   GCGGCTGATCGAAGA GCG-GGCCGCCCGGGAAGCCGCCA AGC TGAAGGCGTTGCGGGAGGCCGCGC AAATCGGACTTTCCG  62 147
   Rru_A3535 4066201 .. 4066234 - -13.3  -2.52464   CCCCGCTGGAAGCGA     TGAAGTCTGG-CGAAG CAA CGTCGGCCAGACTTCA     TCGGTTCCGGAGAGC  72 62
   Rru_A3534 NONE
   Rru_A3533 4064224 .. 4064234 -  -2.4  -3.72576   GTGGTTCCGATCAAA                 GCTC TGG GGGC                 GGGCCGATCAGGCCT  52 33
   Rru_A3532 4063592 .. 4063616 -  -7.8  -3.53761   GAAGGCCGGGGGAAA         GGGACCGCGCC GGCG GGC-CGCTCCC          GCCTCCGAATTGGGC  62 57
   Rru_A3531 4062521 .. 4062568 - -13.2  -3.01712   CCCGCTTTGGTAAGA TCGGCCGGGCGCTGCACGCCCA CGCC TGGGGGCGGGGCGGCCGGACGA TCAGCCCCGATCGCG  70 450
   Rru_A3529 4060241 .. 4060253 -  -4.8  -2.66183   TGACAGAACATGAAG                TGCG TTTGC CGCA                ACATCAGGGCCGGAG  43 29
   Rru_A3528 4059426 .. 4059459 - -21.9   -3.9941   GTTCCGATAATTAAA     GAAAACCCGCC-CCGG GAT CCGGTGGCGGGTTTTC     CGTTTTTATCCGACC 100 126
   Rru_A3527 NONE
   Rru_A3526 NONE
   Rru_A3525 4057497 .. 4057512 -    -6  -3.14564   TGACGCGGTGATCAA              GGCGGC GCGC GGCGCC               GATAAGGCCTTGATC  51 333
   Rru_A3520 NONE
   Rru_A3519 4051425 .. 4051441 -  -4.3   -3.8211   CCGCACCCAGAATAA              GACAGCG CAT CACGGTC              TCCGTTTGTGAAAAA  57 51
   Rru_A3518 NONE
   Rru_A3517 4048770 .. 4048795 -  -3.1  -4.18197   ACCCTTCACGCAAAA         CGGCGGCGGTT GGTG AATGGCCGCTG          ACGGCGGCGGGGAGG  62 417
   Rru_A3513 4042905 .. 4042929 - -14.4  -3.14132   TCCCTCCGGGATCAA          GGAAATCGGC GTCTT GCCGATTTCC          TTAAGCGCCGCCGGG  73 436
   Rru_A3510 NONE
   Rru_A3509 NONE
   Rru_A3508 4035637 .. 4035649 -  -3.3  -2.72379   GCAAGGCCGCAAGGA                CAGGG TCG CCATG                GCCTTACACCCGCTC  41 29
   Rru_A3507 NONE
   Rru_A3506 4033196 .. 4033213 -  -8.3  -4.36914   CGGCGGGGGATAAAA             GCGCCCC CGCC GGGTCGC              GGCCGTTGTTTCTAA  77 37
   Rru_A3505 4032310 .. 4032328 -  -4.5  -3.48378   GAAACACCATTATAA             CCAACGC TTGCG GCGTTTG             TAGGATTTCAGGTTC  52 1
   Rru_A3504 4031002 .. 4031027 -  -8.9  -3.14132   CGTTTCGGCGAGGAA         GCCGGCTGAGG GGGC CCTCAGCCGTA          GTCGCGGGCGTCTTC  61 17
   Rru_A3501 4028954 .. 4028964 -  -3.2  -4.07687   ATCCTTTGGCTAAAA                 CAAG AGT CTCG                 CCGGCCTTATTTGGC  59 32
   Rru_A3500 4028276 .. 4028300 -  -4.2  -2.57132   GGCGCTTGCCAGAAG          GCCGATCCCC AGGCA GAGGATCAGG          AGACGAAGGATCCCG  43 21
   Rru_A3499 4027435 .. 4027459 - -11.4  -4.07568   CCTGCTTGGCGAAAA          GGCGGCGATG GCCTG CACCACCGCC          ATCGAAGAGGCGATC  82 266
   Rru_A3496 4023862 .. 4023877 -  -3.2  -4.87133   AGGCGCTAAAGAAAA              TCCCGA GCGA TCTGGA               CCGGAGTCCAGACAC  77 257
   Rru_A3492 4018109 .. 4018126 -  -8.4  -3.61398   GGTTTTCGCCAAGAA             GACGCG TCCGCC CGCGTC              TCGCGGTCAAAGCGG  64 32
   Rru_A3491 4017603 .. 4017624 - -15.9  -4.48987   TCTCTACAATTAAAA           GGGGATCGC AGAG GCGATCCCC            CAAAATACCTCATCC 100 170
   Rru_A3490 4016550 .. 4016574 -  -2.6  -3.90112   CCTTTCCCAACCAAA          CCGTCTCGCG CCCCC CGCCCGCCGG          CGCGGCCTATACCCC  54 32
   Rru_A3489 4015031 .. 4015070 -   -18  -4.09243   TACACGTGCCTAAAA  TACAC-GAGGGGCCGTCCC GCC AGGACGGCCCCTTGGTGTA  TCGGCAGCGACCGCC 100 42
   Rru_A3485 4009983 .. 4009993 -  -4.6  -3.39668   GCTGAAATCCGACAA                 CGCC ACG GGCA                 ACTTCACCAAGGTCA  51 214
   Rru_A3478 4001648 .. 4001666 -  -8.1  -3.04144   GCTTCATCTGCAAGA            GCCC-GCC CTGG GGCTGGGC             GCCGATGTCGCCGGC  53 450
   Rru_A3476 3999786 .. 3999821 -    -6  -4.16016   GCACCCCGGAAGAAA    TCCTGGCGATCGACGCC GAC GGCATCT-TCGCCCGGC    TTGGCCTGGACAGCC  66 126
   Rru_A3474 3998560 .. 3998580 -    -6  -3.81755   ACCCCGGAAACACAA            GGGGGCCG ACGGG CGACCCCG            GAAAACAGGGGAAGA  60 247
   Rru_A3473 NONE
   Rru_A3472 3996246 .. 3996261 -  -6.1   -3.4072   GACGTGGGATCAGAA              GGGCA GGCTCA TGCCC               GGCGGCAGCTTCAGC  52 4
   Rru_A3471 3995624 .. 3995638 -  -2.7  -2.71791   ACGGCGCGGTCAAAC               CGGGC GACGG GCGCG               CAGGGCGGCGGTCAG  39 5
   Rru_A3470 3994843 .. 3994858 -  -3.2  -3.90112   GCGGTGCGAACGAAA              GGGC TCCCGGTT GCCC               AACGCGCGATCGTCG  56 80
   Rru_A3469 3993941 .. 3993999 - -11.8  -2.57931   CTGACGCCGCACAAG GGGTAGAGCGGCG--GGCG-GAAAGGCAG ACAC CGGCCTTCCGCGCCATCGCCGCTCTACGA TCTTGATCGTCGGGC  64 91
   Rru_A3467 NONE
        rocD 3991132 .. 3991156 - -15.7  -4.70659   TCGCACAGCGAAAAA          CCCCCCGGC ATGGGGG GCCGGGGGG          TAAGGAGTCTTTGGT 100 66
   Rru_A3449 NONE
   Rru_A3448 3971817 .. 3971831 -  -2.1  -3.40403   CGTGGGTCACCAGAA               CCATG CCAAT CATGA               GGTCGATCCCTGTGG  44 64
   Rru_A3447 3971240 .. 3971273 -  -2.4  -3.83026   TTCTTTTAGAGCAAA     TC-CCCCGGCACTCT GGAAG AGAGCGCCATGATGA     TTCGCTTCGCGATCA  52 177
   Rru_A3446 NONE
   Rru_A3445 3968963 .. 3968976 -  -3.9   -4.1891   CGGCGGGAATATAAA               GATAT CTTT ATATC                CTTATCAAGTAGATT  62 64
   Rru_A3444 3967421 .. 3967459 - -19.7  -3.53012   CCCCCGCCGGCGAAA  GCGCCAACGGCCCCTTCC TTGC GGAAGGGGCCGTCAGC-C   AAGCGGAGTCGGGCG 100 68
   Rru_A3443 3964861 .. 3964900 -   -12  -4.08216   TGACCCCTTTTAAAA  GGAGGGCGGCGGC-CGCCG CCG CTTCACGCCGCCGCCCTCA  GCCCGAGGTGGGGAT  84 23
   Rru_A3442 3963630 .. 3963658 -  -7.4  -2.52464   TGCGGCTTCAACGGA       CTCCG-CGTCCCG GCGA CGGGACCTCGGAA        GGCGGAACCGTTCAG  48 64
   Rru_A3441 NONE
   Rru_A3440 3962032 .. 3962049 -  -2.7  -3.53224   CATCGCCGCCCCAAA             TTCCG CTGCGCCC CGGAA              AGCGCCGCCCGCCTT  49 492
   Rru_A3438 NONE
   Rru_A3437 3959743 .. 3959766 - -10.2   -5.0538   CGTTATCTTAAAAAA          GCCCGCGC-CC TCA GGCGAGCGGGC          GGGAAAGCGGGTGGG 100 12
   Rru_A3436 3958922 .. 3958941 -  -7.8  -2.89267   GCGAACGATAGCAGA            GGCGCGCCG CGT CGGC-CACC            CGCCCAGGATGTTAC  55 37
   Rru_A3435 NONE
   Rru_A3434 3952279 .. 3952291 -  -6.9  -3.15544   GGCCAGCCTTACCAA                CCCAG TTT CCGGG                CTTCCTCGGCCAAAC  54 6
   Rru_A3433 3951741 .. 3951760 - -13.6  -4.54727   TTGCCCAAACGAAAA            CGGCCCTT CGCA AAGGGCCG             TTCGTCAGGCGGGGA 100 53
   Rru_A3432 3950070 .. 3950082 -  -6.9  -4.07568   CGTGCTCGCCGAAAA                CGGCA CTC CGCCG                CGCTGAGGGGTCATC  68 36
   Rru_A3429 3946733 .. 3946784 - -10.9  -4.05788   GCGGGGTAAATCAAA TCACCC-GCGCCCGGAGAGCG-GC TGTTTTG GCTCG-TCCCCGGGCGCCGGGCGC GATGCCTGATCTAGG  84 140
   Rru_A3420 3937004 .. 3937017 -  -8.1  -3.14602   GCGATTGGAGCAATA               TCCCG TAAG CGGGA                TTTGCATCGGGCGGC  57 58
   Rru_A3419 3935034 .. 3935058 - -18.6  -4.86731   TCCGGTCAAAGAAAA          GGCCGGCTCC TTGGG GGAGCCGGCC          GGCAGGCGATGAAGG 100 60
   Rru_A3418 NONE
   Rru_A3417 3932922 .. 3932953 - -15.8   -3.0806   CCCAAAGGTGGAAGA      GGCGGGGCGGCCCGC TCG GCG-GCCGCCCCAAC      TAAAGGATCAAAGCC  83 48
   Rru_A3416 NONE
   Rru_A3415 NONE
   Rru_A3414 NONE
   Rru_A3413 3929637 .. 3929659 -  -9.8  -2.82023   TATGGAGACGAAGGA           GCGGGCATCG GGT CAATGCTCGC           CCAGGTACAATTCGG  61 15
   Rru_A3412 3928279 .. 3928312 - -19.8  -2.78596   TATCGGTTTATTAGA     GCATCGAGCGTGAA ATCGGG TTCACGCTCGATGC      TCTAAGCTTTTGGTA  88 90
   Rru_A3408 3925084 .. 3925115 -    -5  -3.01791   ATGTCGCCGGCAAGA      CGCGGACCATGCCCG ATT CGTTCATCG-CCGCG      AACGGCCATGACGTG  45 132
   Rru_A3398 3914441 .. 3914466 - -16.1  -4.87133   ATCGGGTAAAGAAAA         GGCCCGGCCTC GCAA GAGGTCGGGCC          TTACACAACGTCGAC 100 57
   Rru_A3394 3912052 .. 3912069 -  -2.5  -4.08767   GCTATGCCGGCAAAA             CCCTGGC CGGA GTCTGGG              TCGGCAATGACGATG  58 139
   Rru_A3392 3909766 .. 3909797 -  -2.9  -2.90813   GATCGGCGGAAATTA      CCGGTC-TCGCCCG ATCGG CGGGCGATGATCAC      AGGGGCGCCTCCGTC  40 22
   Rru_A3391 3908469 .. 3908489 -  -2.4  -4.05788   GCTTTCGAAAGGAAA            GGCCTTCG TCACG CTACGGCC            GTGGTCAATTTGCCG  57 168
   Rru_A3390 NONE
   Rru_A3389 3905841 .. 3905870 -  -8.5  -2.52464   GCTTCGCCCAAGCCA       CCACGGCGGCCGAC TTC GCCGACTGCC-TGG       GGCGGACGGCGGGGC  51 118
   Rru_A3382 3898396 .. 3898423 -  -5.5  -3.72576   GCGCCGGCTATCAAA        TGCTGGGCCGGC GGGTG GCCGATCC-GCA        AGGGGTGGAAGGCCC  57 453
   Rru_A3378 3894005 .. 3894015 -  -8.2  -4.56597   CTGCGCCTGCAAAAA                 GCCC TGC GGGC                 GAGCGATGTGAGCGT  81 236
   Rru_A3376 3892018 .. 3892030 -  -2.6  -4.11216   CGCTCATCGCCAAAA                GAGC GTCAT GCCC                CCTCCCACCGATCAT  57 18
   Rru_A3375 NONE
   Rru_A3374 3889506 .. 3889525 -   -10  -3.87869   CTAAGCGGCGATAAA            GCC-AGCGG ATC CCGCTAGGC            GGCGATCACCCGGTT  78 20
   Rru_A3371 NONE
   Rru_A3368 3884459 .. 3884503 - -10.7  -3.55444   GCTTCACCTGGGAAA CCCAGGACC-GCGAGCGC-GA TATCG CCAGCGCCCGCAAGGCCTGGG AGGTCGCCAAGGGCT  70 285
   Rru_A3364 3876932 .. 3876968 -  -2.7  -2.89742   GTCAAGTCGTAGAGA    CGTTGCAGGGCCAGACC GAC GGGCTCGCCGCTCATCG    CCTAGCTTTCCTTGG  40 27
   Rru_A3363 NONE
   Rru_A3362 NONE
   Rru_A3361 NONE
   Rru_A3360 NONE
   Rru_A3359 3871452 .. 3871484 -  -3.2  -3.53012   TCGCCTTTGGCCAAA      CGCTGAGCTATGCC GCCCT GGCCGAGCGCATCG      GCGCGCCCGGGGCCT  49 197
   Rru_A3356 3868191 .. 3868211 -  -6.1  -4.07568   CTTGGTTTCCCAAAA            CCGCTCC GAGGCCG GGAGCGA            CGGGTCAGGCGACAG  65 30
   Rru_A3355 NONE
   Rru_A3354 3866581 .. 3866602 -  -2.2  -3.90744   GCCCCCCTGAAAGAA           GCCACCCT GAAAGA AGACTGGC            GATGACCTGGCTGAC  54 394
   Rru_A3348 3861930 .. 3861949 -  -3.5  -4.11216   CGGCGAGGGGGAAAA            TCTGGCG GAGTGG CGGCAGA             TCGCCCTTGGCCTGC  61 432
   Rru_A3344 3856022 .. 3856058 - -20.4  -3.83026   TCTGCTTAGATTAAA    GTCCCTGCGTTAAAGG GATCG CCTTTAACGCAGAGAC    TTTGATCTATTCCCC 100 32
   Rru_A3335 3848114 .. 3848135 -  -5.7  -3.30124   GCGCATCGGCGACAA           GCCCTTGGC CTAG GACGAGGGC            TTCCCGGCCGCCGGC  52 13
   Rru_A3332 NONE
   Rru_A3331 3842892 .. 3842909 -  -2.7   -4.4017   GGAAGGCCCAGAAAA             TGATCCC CGCG AAGATCA              GCATCAGCCATAGAC  63 153
   Rru_A3330 3841858 .. 3841888 - -23.4  -4.72272   CGCCTCCACGAAAAA       CCGCCCGGCTCCTT CGC AAGGAACCGGGCGG       TTTTTTTATCGGGAT 100 63
   Rru_A3328 3839488 .. 3839517 - -18.6  -4.27316   TGCTCGAATTGAAAA       CGGCGCGCCTCC TTTGGG GGAGACGCGCCG        CTGATTCATAAACCA 100 64
   Rru_A3326 3836230 .. 3836256 - -12.2  -2.62263   AGCGGCCCGAGACTA         GCCGATCACCGG GGA CCGGCGAACAGC         GATTTATAGGTCTGG  68 4
   Rru_A3325 NONE
   Rru_A3324 3833097 .. 3833112 -  -4.6  -3.36313   AATCAGATAGAGCAA              GGCTTC CATC GACGCC               TCCCTTGTCCATAGT  49 48
   Rru_A3323 3832853 .. 3832866 -  -3.1  -3.61178   TTGATCCAGGTCAAA               CCTCA ATTT TAAGG                TCTGGCGATCCTGGA  51 49
   Rru_A3322 3831853 .. 3831865 - -10.5  -2.78463   ATCCCCTCCAGGAGA                CGCCG GCC CGGCG                GAAGTCTTGTAGCGC  61 107
        panB NONE
   Rru_A3320 3829967 .. 3829978 -  -7.2  -3.57144   CCTTCCACCGGGAAA                GGGC GGCC GCCC                 CACCATCTCGTGAGC  60 99
   Rru_A3318 3827621 .. 3827636 -    -6  -2.70932   GCCGCCCGGCAAGGA              GCCGTC ACCA GCCGGC               GAGACCGCCGTCGGA  46 14
   Rru_A3316 3823755 .. 3823766 -    -3  -5.40873   AATACAAAAATAAAA                CATT CCAC AATG                 CATTGCGTAAAGCGC  85 413
   Rru_A3314 3821887 .. 3821907 - -11.1  -3.36175   AATTCCCATGGATAA            CCCGCTCCA CCA TGGAGCGCG            TTTCTGTCTTCCTGA  72 256
   Rru_A3313 3818508 .. 3818531 -  -8.8  -5.76633   TTATAGATAAAAAAA          GGGGAACACC CGAA GGCATCCCCC           AATGTTTCCCATGAC 100 69
   Rru_A3312 3816720 .. 3816731 -  -2.2  -3.28791   ACCGCTTTCTGACAA                TCCC ATCG GAGA                 CTCGCGGATGGTGGC  44 195
   Rru_A3311 3816122 .. 3816145 - -15.3  -4.04318   CGCAGATAGCAGAAA          GGCCGGAGC TTTGTT GCTCCGGCC           TTCCAGTGGTGCGCC  95 163
   Rru_A3310 3815007 .. 3815017 -  -2.4  -4.56597   CGTTTTTTTGAAAAA                 GTGC TGA GCGC                 TTAGTACGCATTTTT  66 187
   Rru_A3299 3795168 .. 3795193 -   -12  -3.25823   TCCCGGCTAGAGCAA         TTGGCGTGAA ACGCGG TTCACGCCAA          TTGCTCCGGGGGCTT  69 52
   Rru_A3292 3787852 .. 3787882 - -10.3  -3.93369   GCAATCGTAAGCAAA      GGCCGCCCCTTGGC TTCG GCCC-GGGGCGCCC       CATGTCAGACCCACA  78 460
   Rru_A3285 3781120 .. 3781154 - -18.7  -4.07687   ACCCGCCCGTGAAAA     CCCAAAAAGGGGAGC GCGAG GCTCCCCCTTTCGGG     TTTTTTTCGTTCCAG 100 81
   Rru_A3278 3775854 .. 3775881 - -14.2   -5.0538   TTGGAGTTGAAAAAA        CGA-GGGCGGCAC CGA ATGCCGCCCGTCG        CAGGAAAGCGAGTGT 100 184
   Rru_A3277 NONE
   Rru_A3276 3773654 .. 3773671 -  -6.9  -2.52464   TCTGCGGCGAAGGGA             CGGCCGT GGTG ACGGCCT              CCCTCCCCGGACGCC  48 45
   Rru_A3275 3772656 .. 3772677 -  -5.7  -3.83026   CGTTGCGAGATGAAA           TCCGCCCCC GCCC GGGGGCCTA            CGCCGGTCCCGTCAG  60 37
   Rru_A3274 NONE
   Rru_A3273 3771128 .. 3771165 -  -8.9  -3.90744   TGGTTTTGTAAAGAA   GCCGGGGAACCGCC-GCG ACC CGCAGGCGGAGCGCGGGC   AGACGGGCGCCTTTG  73 172
   Rru_A3272 3769748 .. 3769781 - -12.5  -3.96327   ACCCGCGACGATAAA     TGGATC-GACCGCCAG AAG CTGGCGATCCGCTCCA     CCCTTGATGTCTTGG  82 316
   Rru_A3269 3767386 .. 3767402 -  -2.9  -3.04461   GATCGACGCCGAAGA              GACCG CGAACGC CGGCC              CCTATTTGCGGCTGG  42 269
   Rru_A3265 3764080 .. 3764108 - -11.8  -3.72576   CGCGCCTCGATCAAA        CCGCGTTAAATG CTACC CCTTTAACGCGG        AAACTTTGATCTCGA  80 106
   Rru_A3264 3762894 .. 3762928 -  -7.1  -3.35046   CGACGCGGTCAAACA    GCGCAGAGGACGGCGCC GTC GTCACCGCCC-CT-CGC    CAGCCATGAAGGCGC  56 12
   Rru_A3263 3761978 .. 3761992 -  -2.8  -3.55563   AGTTTATGCGGCAAA               GTGG GCAAATA CCAC               GGGATTTCAGGCTCG  47 55
   Rru_A3262 NONE
   Rru_A3261 3758086 .. 3758096 -  -8.2  -4.11216   CGGTGACGCGGAAAA                 CCGG CCC CCGG                 TTTTCCGCTCGCCAC  71 356
   Rru_A3259 3755883 .. 3755936 - -17.9  -3.78775   CCCCCGAGGAGGAAA CCGCCCCGGCCGCGCCATCGGCCGA TGCC TCGGCCCCTGCCTCGGCGGGGGCGC CGATCGGCGACCGCT 100 185
   Rru_A3253 3749124 .. 3749139 -  -2.5   -3.5394   AAAGTTTGGGTCAAA              GCGCCG CCGCC CGGC-C              GGATTCAGCCGGCCT  47 30
   Rru_A3252 3747795 .. 3747808 -  -5.2  -3.89346   GGGGTATTCCAGAAA               CCGG GGGGAA CCGG                GGAACGGAAGGAGTC  59 334
   Rru_A3250 3745846 .. 3745880 - -20.6  -4.08706   TGGGCACTATATAAA     GCCGCGCTCCCGCGCC ACA AGCGCCGGCGCGCGGC     CGCCTTGCCGCCCCT 100 40
   Rru_A3249 3745166 .. 3745178 -  -2.6  -2.73159   GCAACCGGGTGAAAT                GCAG CAAGC CCGC                CCGCCTCAGCCGCCG  39 31
   Rru_A3248 3741651 .. 3741667 -  -8.7  -4.25104   GCGCCCGGAGCAAAA              CGCCTGA ATT TCAGGCA              GTTAGGCCAAAACGG  79 27
   Rru_A3247 NONE
   Rru_A3246 3740359 .. 3740371 - -10.5  -3.07344   GCATTTCGGAAGACA                GCGCC GGG GGCGC                TATCGGCCTTTAGTG  64 35
   Rru_A3245 3739956 .. 3739966 -  -6.8  -3.02471   CGCCCACGATAGACA                 GGCA GAC TGCC                 ACGCGCGGCGGGCGC  52 112
   Rru_A3244 NONE
   Rru_A3243 3738698 .. 3738731 - -18.1  -4.74012   ATGATAAAATCAAAA     GCGGCGCGCGGTGAC CAAG GTCTCCACACGCCGC      TTTAGCATCTTGATC 100 90
   Rru_A3242 3737716 .. 3737743 - -14.2  -3.03124   CCGCAGCGTGCAACA        GGTGGCGCAGAGC AGC GCCCT-CGCCACC        AAGGGAATGACCACG  72 219
   Rru_A3240 3736033 .. 3736053 -  -7.5  -3.28712   GGGCGGCGGGCAGAA            TGACCAAGC GCG GCACGGTCA            GGACTTGGCGGCATA  56 23
   Rru_A3239 3735622 .. 3735635 -  -3.8  -3.57601   AAAAAAGAACAGTAA               CGCA TAAAAT TGCG                GGCATTCGCGCTGCG  51 148
   Rru_A3238 3734964 .. 3734977 -  -3.7  -3.50853   GCGGCGGAACGACAA               CGGCG GGGT CGCTG                GCCGGCAACCTGTTG  51 405
   Rru_A3231 3725491 .. 3725502 -  -7.2  -2.85668   GACGTCGATACGATA                GCCG ACGG CGGC                 GGTGAATCGTCAACC  51 99
   Rru_A3230 3723549 .. 3723578 -  -8.5  -3.28791   AGCGGTCGCGGACAA       CAGGCGGCGACCCG GTC CAGACC-CCGCCCG       ATATCGCTTGCCCGG  59 100
   Rru_A3229 3722754 .. 3722771 - -11.3  -4.43911   AAAGGGGAATGAAAA             GAACGGG CCCT CCCGTTC              CAAGATCTTGATTAG  95 96
   Rru_A3228 3722220 .. 3722233 -  -4.5   -3.3692   GGCCACCGGAAAAAT               CCGTCC CCC GG-CGG               CGGTCCGCCATCGCT  49 39
   Rru_A3227 3720887 .. 3720904 - -11.3  -4.24002   TTGCAAAGTGGAAAA             CGGCAAG CCCC CTTGCCG              CCCACCGTCGGAAAA  89 258
   Rru_A3226 3719852 .. 3719864 -  -4.7  -3.75153   CCCCTCGAACGCAAA                CGGCG GCG CGCCT                CGTTCGAGGGGTCCG  57 247
   Rru_A3225 3719272 .. 3719327 -  -2.7  -3.62046   TCAGGTCTTCAAGAA GGCGCTGCTCTTCAAGGCTGTCGACCA GTCGCA TGGTCGA-AGCC-CGC-GA-CTGCGCC TCGACCACCCGCCAG  49 65
   Rru_A3224 3718613 .. 3718643 -  -6.1   -3.5393   ACGATCCGGTCGAAA      GCCTCGGTCCGC GAGGATAA GCGGAGCG-GGC       TAAGGACGGATCCAG  55 25
   Rru_A3221 3715865 .. 3715882 - -14.1  -3.86524   ATAGCGCTGGATAAA             CGGCCCC GTCG GGGGCCG              CGAGTCTGGGGGGGG  91 115
   Rru_A3220 3713822 .. 3713844 -   -17  -3.01712   CCTGGCCGGCGAAGA           CCGGTAGGGG AAG CCCCCACCGG           CCTTGGGCAAGCGTC  87 39
   Rru_A3214 3705406 .. 3705450 -  -7.1  -3.76492   GGCAACGCCATCAAA TTCACCCC-GGCCGGC--GGCG AGAT CGCCCTGTCGGCCAGGGGCGAT GAGGACAAAGGCCAG  64 319
   Rru_A3212 NONE
   Rru_A3211 3701404 .. 3701421 -  -5.5  -2.52933   GTCGAACCGATCAAG             GATCTGC GGCT GCTGATC              ACGCCGTCGAAGAAA  44 373
   Rru_A3208 3698996 .. 3699035 -  -6.3  -4.08767   CTGATCGCGCGAAAA CGCCTGGGCCG--GAGGGG TGCG CCCCTGATCGGCTCGGGCG  GCTGACCTTAGGCCG  65 33
   Rru_A3207 3697648 .. 3697668 -  -6.2  -3.67775   ATGGGGATGGAAGAA           GACCCTGTC AAAC GACAG-GTC            AGGGGTGTCAAGCGC  57 33
   Rru_A3206 3697141 .. 3697164 - -10.3  -5.54907   CCGACAAAACAAAAA          GGCCGCTCCC GGCAA GGGA-CGGCC          TTTTTGTTTGTTCGG 100 68
   Rru_A3198 NONE
   Rru_A3197 3684229 .. 3684250 - -12.9  -3.66178   CCGCCGAATTGGAAA           CGCGCCTGG AGGC CCTGGCGCG            CGCCACCGGCCGAAC  79 483
   Rru_A3185 NONE
   Rru_A3184 NONE
   Rru_A3183 3673848 .. 3673871 -  -6.6  -3.14051   GTATCGCCATGAACA          TCGGCGGC CTTGGCCT GCCGCCGG           TTCTCGGTCCGGCCC  51 384
   Rru_A3181 3672615 .. 3672641 -  -4.3  -3.96624   TATCTCCAGGAGAAA         TCAGGCCAGTT GTTCA ACCCGGCCTGC         GTTCGCGCCTTTCTC  61 177
   Rru_A3179 3670574 .. 3670597 -  -6.6  -3.72576   TGCTGTGGGATGAAA          GGCTGTCGAC CGCC GCCGTCAACC           GCTTCCTGGTCGGCG  59 153
   Rru_A3177 NONE
   Rru_A3176 NONE
        gatB 3666654 .. 3666676 - -10.4  -3.02511   GCTATGCCTCCAACA           GCCTGCCGGC CCT GGCGGCGGGC           GGATTGGTCGGCTCC  60 168
   Rru_A3173 NONE
   Rru_A3172 3664105 .. 3664115 -  -2.4  -3.35344   CGTAAAGGAGAGCAA                 GGCG CAT CGGC                 TTATCCTTTTAGGGG  44 94
   Rru_A3171 3663576 .. 3663625 -  -7.7  -2.73681   GATCTACGCCAACGA CATTCTTGTCGCCCGTGGCGAAG TGAT CATCACCGATGGCGACAAGATCG GCGTGACCCTGACCG  51 176
   Rru_A3163 3654689 .. 3654726 -  -9.8  -3.22091   AGGGCAAGGGAGCAA  GCCCCGC-CGC-GCCCGG TCAG CCAAGCAGCGCGCGGGCC   CGCTCCAGATCCTCG  65 4
   Rru_A3162 NONE
   Rru_A3161 3652527 .. 3652546 -  -8.5  -3.14344   CACGGTGGTCATCAA            GGCCAGC CCGCTT GCCGGCC             TCAGCGCCAATAAAA  56 410
   Rru_A3159 3650064 .. 3650090 - -17.2  -4.92757   CCATCAATAACAAAA         CGGGCGCCAGCC TTA AGCGGGCGCCCG         TCGGTGATCCAAGCG 100 49
   Rru_A3156 NONE
   Rru_A3155 NONE
   Rru_A3154 NONE
   Rru_A3153 NONE
   Rru_A3152 NONE
   Rru_A3151 NONE
   Rru_A3150 NONE
   Rru_A3149 NONE
   Rru_A3148 3632374 .. 3632392 -  -5.2  -3.61536   AAGGCAAGTCCTAAA             GAGAGCGA ATA CCCCTCTC             CTTTTGACGGTATCA  54 38
   Rru_A3147 3631497 .. 3631510 -  -4.5  -4.07568   CGCGTGCCGCGAAAA               GGCTA AACT CAGCC                GATGCGGCCCTGTTC  61 20
   Rru_A3146 3630937 .. 3630971 - -17.3  -3.61715   CATCCGTTTTAAGAA    CAGCGCCTTGGGGAGCG TGA CGCTCCCCAAGGC-C-G    ATCTTATTTCGCCAG 100 29
   Rru_A3144 3627237 .. 3627248 -  -5.8  -3.09516   TTCCGCACTAGGGAA                TGGC TTAG GCCA                 GCCGTCGGCGCGGGC  49 18
   Rru_A3139 3621030 .. 3621083 -  -6.6   -3.2964   AAACGCGGCGCACAA GCGGCGAGCGCCAGTCCGGCGA-CGAC GAG GCCGGCCACCAT-CCGGCGC-CGCCCC AGCGACAAACCATCC  56 196
   Rru_A3138 3619356 .. 3619370 -   -10  -3.57144   CCCTTGATCTGGAAA               TCACCG AAA CGGTGA               TGACGGGCGATGTGG  67 466
   Rru_A3136 3616167 .. 3616182 - -11.8  -3.17075   GCTGGTGTAAGCCAA              CGGCCG CCCC CGGCCG               GGTTATTCCCCCGGC  69 244
   Rru_A3131 NONE
   Rru_A3130 NONE
   Rru_A3129 3607448 .. 3607460 -  -6.2  -3.71284   GCTCGACGAACAGAA                GGCC CATGT GGCC                GCCGTGCTGCTTGAT  59 397
   Rru_A3127 3605800 .. 3605848 -  -8.8  -4.56597   CCTGGCCCGCAAAAA GGCGAGGCTGGA-GCGCCAGGGCA CGA TGACCCTGCGCCTCCA-CCGCACC GCCGATGCCGGGGCT  81 483
   Rru_A3125 3603979 .. 3603994 -  -6.8  -3.54543   ACCCAGTGGCTCAAA              GCCCTG CCGC CAGAGC               CCTAATCGGGCGCTT  58 27
   Rru_A3117 3595023 .. 3595034 -  -2.2  -3.31322   GCGAATCGCCTAGAA                CCAGC TCT GC-GG                AATGATCAGAACGTC  44 8
   Rru_A3116 3593359 .. 3593373 -    -5  -2.70946   TTCTCTCAGAAAGAG               GCTTTC AGG AAAAGC               GACACGGCGTTTTCG  43 1
   Rru_A3115 NONE
   Rru_A3114 NONE
   Rru_A3113 3590308 .. 3590331 - -12.5  -2.51535   CCAGCATAAAACGAC          GATCAGCCG ACTTGG CGGCTGATC           CAAGGGCCAAGCGTA  68 4
   Rru_A3112 NONE
   Rru_A3111 NONE
   Rru_A3110 3585504 .. 3585523 -  -4.2  -3.01712   GCTGGCCTGGGAAGA            CGCCAGCGG CTT CCAC-GGCA            GCATGTTCTCGGCCG  44 164
   Rru_A3106 3576472 .. 3576493 -  -8.7  -2.52795   AAGCGGTGGAAGGGA           TCGGCGC GGGCGATG GCGCCGA            GCTTCTGGTCGCCCC  51 224
   Rru_A3094 NONE
   Rru_A3093 NONE
   Rru_A3092 NONE
   Rru_A3091 NONE
   Rru_A3090 3553154 .. 3553169 -  -7.5  -3.53811   TTCACCGTGGTCAAA              CGCCG CGACGC CGGCG               CCTCGGCCGCCGCCC  60 512
   Rru_A3086 NONE
   Rru_A3085 NONE
        engA 3548413 .. 3548444 -  -9.4  -5.00616   CCCCCTTTCAAAAAA      GAAAAAGACCCCGG TGAT CTGGGGCCGTTTTC       CTTCTCTGCCAAGGA 100 63
   Rru_A3083 3547676 .. 3547686 -  -6.8  -3.86015   GAGGCGCTGTATAAA                 TCGC TAA GCGA                 AGACGGCGATCCGCG  64 176
   Rru_A3075 NONE
   Rru_A3074 NONE
   Rru_A3073 3538312 .. 3538344 - -16.4  -3.13522   AGGCGCGGATCAAGA     CGCGGCCGATCAAAC AGTG GTTCG-TCGGCCGCG      AATTCAACCGCATGA  81 200
   Rru_A3070 3534539 .. 3534584 - -16.9   -3.6543   CAATGTGCCAAAATA GGGCGTCATCGGCCTCTCCCTC GGG GAAGGTGAAGCCGATC-CGCCC CGCCCGATCACGCTG 100 33
   Rru_A3069 3534015 .. 3534028 -  -3.7  -2.70298   GGCCTCAATGATAAT               CGACG ATTT CGGCG                TCATAGGCATCTCCC  41 1
   Rru_A3068 3533637 .. 3533664 -    -9  -3.48593   GACCCCGGCAGATAA        GCCACCCCCGCC CACA GGCAAGGGAGAC         GGAGCCGATGGGTTC  66 73
   Rru_A3062 3526435 .. 3526458 - -12.4  -3.66178   TTGGCGAATGGGAAA          CGGCCGGC CCCGCGCC GCCGGCCG           CCCTCTCGAGAAGAC  82 41
   Rru_A3061 3525414 .. 3525446 -  -6.4   -4.2558   GAGTCTCGATCAAAA     GTTCTGCGTTAAAGGG GTT CCCTTTAACGC-GG-C     GTGATCTACCGCCGG  71 31
   Rru_A3058 3520822 .. 3520833 -  -2.2  -3.29461   GAACTCTCTCCATAA                GCCA AAGG TGAC                 GCTCATATGGGAGCG  44 67
   Rru_A3057 3520278 .. 3520309 -   -18  -2.51642   ACACGATCCATGAAC      CCGGCCGCCCCCTT CTCC AAGGACGCGGCCGG       TGACGATGAGCAAAA  85 43
   Rru_A3056 NONE
   Rru_A3055 3517407 .. 3517446 -  -6.5   -4.2349   GGGCGACACCGAAAA GGAGTTGT-GG-GG-CGGCG AAA CGCCGACCACCAACAACCGC ATGGAATTGATGGCG  70 372
   Rru_A3052 3515354 .. 3515366 -  -4.7  -3.28924   CATCTTCGGTGAGAA                CGGCC CGG GGACG                TCATCCCGCCGCCTG  49 260
        gcvT 3514085 .. 3514105 -  -3.1   -3.9978   TGACAAAAGGAATAA            GTGGGACGC GTC GCGCCGGAC            GCTATGCCTTGTGAT  56 27
   Rru_A3050 3513616 .. 3513629 -  -3.7  -5.02074   TCAGCCTCGAAAAAA               TGCCC GGAC GGGCC                GGTGGCGGCGCCGCT  80 44
   Rru_A3049 NONE
   Rru_A3048 3510685 .. 3510721 - -13.5  -4.07568   GCCGCCCGGCTAAAA    CGCCCCCCGGCCGCACA ACG CGCGCGGTCGGGGGGAT    CGGCGCTCTTATTCG  95 34
   Rru_A3046 3509187 .. 3509229 -  -9.3  -3.12351   GGTCTTGATAGTCAA GCAAATCGTCGTCGCACTCTG TTT CAGAGTGCT-CGG-GATTTGC CCTAAATCCCGCGCG  60 27
   Rru_A3040 3503456 .. 3503484 -  -3.7  -3.79113   AGTCCGGCACAACAA        CCGCCCACTTCAA TCC CTGGAGCGGGAGA        GCCGGTTTCCCGACC  54 165
   Rru_A3030 3488803 .. 3488822 -  -7.8  -3.63315   AGAAAACACGAAATA            CCGCCGGGG AAC CCCCG-CGA            GCTAATTTTTGCCGG  64 27
   Rru_A3029 3486861 .. 3486879 - -10.2  -3.10796   GGTGATGATGCAAGA             GGCGCTGA ATG TCGGCGCC             TACATCGCCTGGGTC  62 93
   Rru_A3021 3477222 .. 3477237 -  -7.6  -3.30338   ATAACCGGGGGACAA              GGTATC GCGC GATACC               GACCGATCCCCTTCT  59 406
   Rru_A3015 3471980 .. 3472026 - -21.6  -4.66987   GAGACGTGAAGAAAA GAGCACGGCGCGGCGGGACGG GTGGGG CCGTCCCGCCGCGCGG-GATC AGCCGCGAACCCGTT 100 24
   Rru_A3014 NONE
   Rru_A3013 NONE
   Rru_A3012 3469146 .. 3469169 - -11.6   -3.0894   TAACCACGGACGGAA          GGGCGCGCCC GGTC AGGCGCGCCG           CTTCTGGACAAGGCG  68 14
   Rru_A3010 3467363 .. 3467374 -  -3.6  -3.21416   CAGCGCCATCATCAA                CGGC CTGC GCCA                 GCGTCATGTGCTGAT  45 172
   Rru_A3008 3465413 .. 3465449 - -16.5  -3.53811   CGCAGCTGCGCCAAA    GCCTGACCGCCAGCGGC TGG ACCGCCAGCGGCGAGGC    GGTGGCCTATTTCTA  86 109
   Rru_A3006 3462590 .. 3462613 - -17.4  -3.60971   ACGCGAACGGCGAAA          GGGGCGCCCC TGCG GGAGCGCCCC           TTTCCTGGTGTCGGG 100 57
   Rru_A3004 3460303 .. 3460316 -  -5.2  -4.08216   CGATGCCCTGCAAAA               GGCC GATATG GGCC                GACTGGCCGGCGAGA  64 418
   Rru_A3001 3456575 .. 3456585 -  -6.8  -3.34043   CCTATGAGCGGATAA                 CCGA AAA TCGG                 GGGAAAGCGGTTCCT  56 103
   Rru_A3000 3454257 .. 3454281 - -18.6  -3.54424   TCGCACCGTTCGAAA          TCCCGGGCCG ACCGG CGGCCCGGGA          AAGGGGATGGATCAC 100 37
   Rru_A2999 NONE
   Rru_A2998 3452090 .. 3452132 -  -9.3  -3.12668   CAGGCTGATAGTCAA GCAAATCGTCGTCGCGATCTG GTT CAGATCGCT-CGG-GATTTGC TTTAGGCGACGCAGG  61 27
   Rru_A2997 NONE
        cbiD 3448666 .. 3448690 -  -7.8  -3.95073   GCCGATACCGATAAA          TGCGGGTGAG CCCCC CTCACCCACC          CTCCCCCACCACCCG  69 17
   Rru_A2995 NONE
   Rru_A2994 NONE
   Rru_A2993 3445229 .. 3445244 - -10.4  -3.55444   CCGTCACCCTCGAAA              GCGAGG CCCG CCTCGC               CCATTGGCACGGCGT  67 177
        cobH NONE
   Rru_A2990 NONE
   Rru_A2989 3441684 .. 3441739 -   -16  -3.53012   CGCCGCCGCCCCAAA CGCCCCCCCCTGCCCACCGCCGCCACC CCG GACGA-GGCGGTGACCTGGGTGGAGCG CTTGCGGGGAGAGGA  93 57
   Rru_A2983 3434834 .. 3434872 -  -8.1  -4.07568   CCGGGCTCGGGAAAA  CCGGA-C-CTCCGGCGCCA GGG CGGCGTCGGAGCGATCAGG  CGGCGTAGCGCGCCA  71 21
   Rru_A2982 3433457 .. 3433482 -  -8.9   -3.9392   TTCGAGCCGAAACAA         CTGCTGTCAGG TTAG CCTGACTGCCG          TGAATGTCAATCTTT  73 39
   Rru_A2981 NONE
   Rru_A2980 NONE
   Rru_A2979 NONE
   Rru_A2978 3428436 .. 3428461 - -11.9  -3.62522   GAACCGCGGTAAGAA         GTCCA-CCCGAC CAG GTCGGGACGGAC         CTTGTTATCCGGCGT  77 123
   Rru_A2977 NONE
   Rru_A2976 3427846 .. 3427862 -  -9.4  -3.68351   TCGGGAGTATGGAAA              CGGCAG CCGCC CTGCCG              GCCTTGCGGCAGCGG  68 95
   Rru_A2975 NONE
   Rru_A2974 3425956 .. 3425992 - -18.8  -3.67175   AGCCGCCAAAAGCAA    CAGGGCGAGAACGGTC TGTTC GACCATTCCCGCCCCG    TAGGTCCTGTTCCGC 100 85
   Rru_A2971 3421029 .. 3421086 -  -4.1  -3.64822   AGCGCTTCACCCAAA CCGATCTGGAGATCTATTGGGGG-GCC TATCTC GGCACCCCCGAC-GAAATCCTGATCAG CGGCCCGCTGGCCGA  54 143
   Rru_A2963 3413216 .. 3413248 -  -7.8  -3.75665   TGAGAGGGCAGCAAA     TCGTCGTCGCACTCTG GTT CAGAGTGCG-CGG-GA     CTTGCTAACCCGTCA  67 38
   Rru_A2957 3407897 .. 3407925 -  -9.6  -3.10715   GGCACGATGATCGAA       CTGCCGCGCGCCGC CCT GCAG-GC-CGGCAG       CATCGCCCAGACCGC  59 385
   Rru_A2950 3399722 .. 3399750 - -11.8  -5.07652   CCGGGCAAAAGAAAA       CCCCAGATAAGCC GTTA GGCC-ATCTGGGG        TTTTTTTGGTCGGAG 100 165
   Rru_A2949 NONE
   Rru_A2948 3398618 .. 3398628 -  -8.2  -3.66666   GCCAAAACGCCCAAA                 CCCG CCC CGGG                 GTTGCTTGGCTGGGC  64 45
   Rru_A2947 3396819 .. 3396837 -  -2.2  -3.08812   CCGGCGGCAACAAAC             GGATCGTC ATC GGCGTCCC             TCTCGCTGGGGGCTA  41 51
        mutL 3394897 .. 3394911 -  -2.7  -3.05775   ACCACGCCCCAAAAG               CGCGG CCCCT CCCCG               GTTCCAGAACCGCCG  41 53
   Rru_A2945 3394309 .. 3394337 -  -5.1  -2.87132   GCCGGGGGTCAGAGA        CGCCGACACGAGG TGG CCTCCCGCTGACG        AAGGGGCGTGCTCGC  45 48
   Rru_A2944 3393302 .. 3393312 -  -2.4  -4.87133   AGGGCCCAAACAAAA                 GTCC CGG GGCC                 ATCATCCCGGCGCGT  75 71
   Rru_A2943 NONE
   Rru_A2942 3390029 .. 3390056 - -11.2  -3.42574   GGAATGGGAGCAGAA        GCGACGGCGCCCG GAT CGGGCGGCA-CGC        GCCTTGATGCTGGTC  68 232
   Rru_A2939 3387444 .. 3387470 -  -9.3  -4.78029   GGAAGAAAAGGAAAA         TCAGGCGACCC GGCAG GGGGCGCCGGA         GGAGAAAACTCAGGC 100 35
   Rru_A2938 NONE
   Rru_A2937 3384507 .. 3384517 -  -2.4  -4.56597   CTTCGGTTCGAAAAA                 GGCG TCG CGCT                 CTTGGTCTTTTTCTT  66 78
   Rru_A2936 3383064 .. 3383092 -  -2.3  -3.44146   CTTTGCCATAACCAA        GCGGGTCAG CTTATCGCCTT CCGCCCCGC        TGTCACAGCCCGCTT  47 39
   Rru_A2935 3380575 .. 3380599 -  -9.9  -4.36914   GGGGCTCTGACAAAA          GCGGGGCGC GACTCAG GCGCCCCGG          CGCTGGGGCGGAATC  87 13
   Rru_A2934 3379535 .. 3379549 -  -6.4  -5.60993   CCCCCGATAAAAAAA               TGCGAT AAG ACCGCA               TTTCTTGCTTGCGCC 100 235
   Rru_A2932 3377829 .. 3377843 -  -9.2  -3.32844   TTTCCTATCCCATAA               CGGCGC GGC GCGCCA               GATCAAAACTGAGCG  63 114
   Rru_A2931 3376150 .. 3376174 -  -5.5  -3.66784   TCAGGTCGAAGACAA          GGGGCCGGGCA TCC CGACCGACCTC          ATGGAGTGCGTGTTC  57 315
   Rru_A2928 NONE
   Rru_A2927 3370185 .. 3370196 -  -2.2  -3.49102   ACAGGCCCGATACAA                GAAG CTGT CCTC                 ACCGGGGGAGGATCG  47 147
   Rru_A2926 NONE
   Rru_A2925 3367313 .. 3367337 -  -5.6  -4.66833   CGGCAAGCGGAAAAA         GGAGCGC-CGG CGTT CCGCGCGTCCC          TGTATTTGGACCAAA  76 143
   Rru_A2924 3366383 .. 3366409 -  -9.2  -4.26076   CGACCGCGACGAAAA         CCGCCGCCGGGG AAG CGCCGGCGCCCG         CTTCATGGCCGGCTG  80 109
   Rru_A2922 NONE
   Rru_A2921 NONE
   Rru_A2920 NONE
   Rru_A2919 3360402 .. 3360432 -  -6.8  -3.83102   GAAACCATGACGAAA       TGCCCCTCTTGTTC TAC GAAGATCAGGGGCA       AGTATTACGTTGATG  64 511
   Rru_A2917 3359730 .. 3359747 -  -2.7  -3.75897   AACGCCTAACTCAAA             GCGCGTTC ACC AAACG-GC             CCCGTTTCGTCTGAT  52 3
   Rru_A2905 3349181 .. 3349218 -  -8.5  -4.26881   TTGCATAAAACCAAA   CGGGGCGAACCCTTCTTG TTT CAAGAAAGAT-CGCCCAA   AAGCAACTTAAGATT  75 136
   Rru_A2904 NONE
   Rru_A2900 3342559 .. 3342577 -  -5.2  -4.07568   CCTGCTTGCCCAAAA             CCCCATGG TTA CTATGGGA             ACTACCGTTTAAACA  61 254
   Rru_A2896 3338910 .. 3338926 -  -3.6  -3.82061   TTACACAGAAGATAA              GGACCG TTCCC CGTTCC              GCCAGCGTCCATTTT  54 73
   Rru_A2895 3337921 .. 3337933 -  -3.3  -3.53012   GCTCCTCCGGGTAAA                CCTGG CGA CCACG                GCCGCCCCCTTACGG  49 35
   Rru_A2894 NONE
   Rru_A2893 NONE
   Rru_A2892 3334879 .. 3334889 -  -2.4  -2.73124   CTTTACGGTGGAAAC                 CGCC CTG GCCG                 AGGTCTCCTATCATC  38 418
   Rru_A2884 3326670 .. 3326681 -  -2.2  -3.78775   TGCTCTAGGAGGAAA                GCAA ATCG TCGC                 CGCCCCCGGAATGAA  52 59
   Rru_A2883 3324561 .. 3324584 -    -3  -5.40072   CCGTTCCCAAAAAAA          TCCACGGACC CTCA AGTCCGCGAC           CTCCAAGGGAAAACT  85 99
   Rru_A2882 3322150 .. 3322208 -   -22  -2.66873   ATGGTTAGGAAACAG CCTCCAACCCCATGAAAAAAGCCAGCC CAAACC GGCTGGCTTTTTTCATGGGGA-AGTGG TGGGCCCGGCAGGAC 100 159
   Rru_A2879 3316532 .. 3316550 - -11.6  -3.62096   CTTTACGACGCCAAA             GCCGCCGG CGA CCGGCCGC             TTGCCGAGGTTCTGC  72 216
   Rru_A2875 3311483 .. 3311506 - -10.2  -3.14344   GACGGCCGCGACTAA          GGCCG-CGCCG CCT CGGCGGCGGCG          TTTCCTGGTTTCGCA  65 415
   Rru_A2873 NONE
   Rru_A2872 NONE
   Rru_A2871 3307019 .. 3307057 - -22.4  -3.31144   TCTCCACTTCGAGAA   CACCGACGGCGAGGGGGC CTA ACCCCCTCGCCGCCGAGG   CTCGCGAGAAGCCTA 100 38
   Rru_A2866 NONE
   Rru_A2865 3298251 .. 3298286 - -16.1  -3.64703   TTCGCCTGATCCAAA    GAC-GGCGGGCTCCGG TCTCC CCGGGGCCCGCCTGCC    TTGGCAAAGCGCTTA  93 38
   Rru_A2863 3296241 .. 3296255 -  -3.5  -3.53012   GCGGCTGGGCGGAAA              CCTGGC GTCT GCC-GG               CCTTCCGCGACTGGT  51 385
   Rru_A2858 3290880 .. 3290903 - -19.6   -4.4078   CCCTTTGAAGGAAAA          CGGCGGTCGG ACAC CCGACCGCCG           TTCCCGTTCGTCTTC 100 57
   Rru_A2857 NONE
   Rru_A2856 3289878 .. 3289920 -  -4.5   -4.4648   ATCCTGACCAGAAAA GCGCGGATGGGGGCGGGCG GCTAT CGGCCGCTCCGTTCAGCCC GCCGTCGATTGCTGT  70 19
   Rru_A2855 NONE
   Rru_A2854 3284915 .. 3284925 -  -8.2  -4.56597   CCGGCTTTTGAAAAA                 GCCC TAC GGGC                 GATGGCGATCATCGC  81 387
        fliX 3278137 .. 3278149 -  -2.6  -5.42265   GGAAAGGACAAAAAA                GCGA TGCAT CCGC                TCGGGTTTGGCAACC  85 170
   Rru_A2847 3277480 .. 3277498 -  -4.4  -5.02476   ACACCGCCCAAAAAA             CCTTCGAG CTG CACGACGG             CGTGGACGAGGATAC  83 214
   Rru_A2841 3272552 .. 3272567 -  -6.1  -3.02511   GTTATTTCCTTAACA              TCCGC GAACCG GCGGA               CAGACCGCTACTGGA  49 33
        fliM NONE
   Rru_A2839 NONE
   Rru_A2838 NONE
   Rru_A2837 3269084 .. 3269116 -  -8.9  -4.37886   TCAGGTCCGACAAAA      TCCGGGGCCGCCGGC GCT GGCGGCCTGCCCGGA      AGCAGCCTCCCCACG  82 246
   Rru_A2836 3268170 .. 3268223 -  -9.2  -2.93783   AAAATCCCGAAATCA CGCCGTCCCCGCGGGCCCTCCGCC TGACCG GGCGAGTCGCCCACCGGGGTGGCG ATGGCGTAAGAGACC  59 75
   Rru_A2835 3267566 .. 3267602 -  -9.4  -3.25823   CGGCGCCGACAGCAA   GGTGGCGCCCAGGCGGTC AAG AAACGCC-GAGCGCC-CC   GCGATCAGGGCGGCC  61 5
   Rru_A2834 NONE
   Rru_A2833 NONE
   Rru_A2832 3263075 .. 3263098 -  -6.8  -4.07568   GTTTCGCTCCCAAAA          CAAGACCCGGA TGG TCCG-ATCTTG          GAAGCGGCAGGCGGC  68 199
   Rru_A2831 3261569 .. 3261579 -  -4.6  -4.07618   CCTTCAACAAGGAAA                 CCGC CGC GCAG                 CCCTCCGATGTCTCG  62 299
   Rru_A2826 NONE
        flgC 3258627 .. 3258644 -  -3.3  -2.85996   GAGGACGGACGAAAC             CGCCCCT AATT ACGAGCG              CAGCAATTCAAGGGT  42 17
        fliE 3258251 .. 3258267 -  -3.5  -4.07687   ACCCGCCCGGGAAAA              GCCCCGG CCG CCGCGCC              TCAGATCGGCATGCG  59 26
   Rru_A2823 3257845 .. 3257896 - -26.3  -2.76589   AGATTCAATAGATTA GAGCGGCAATCATGCGGAAAA TTCCCATTCT TTTTCCGCATGATTGCCGCTC TGTGGTCGGCCCCGG 100 55
        fliR 3256974 .. 3256995 -  -7.3  -3.01712   GGCTCCCCTTCAAGA           CGCCTTAAG GCGT CTCAAGGCA            TCGCCAGATTGATCA  52 18
        flhB NONE
   Rru_A2820 NONE
        recA 3252148 .. 3252178 -  -4.6  -4.49937   GGAAGAACACGAAAA      GCGGGCGTCAGGC TTCGTC GCC-GACTCCGGC       GGCGCCACCGGCGTC  70 2
        alaS 3249170 .. 3249209 - -15.6  -4.56775   AGGGGGGCGCAAAAA  GTCCGGGCGGGGAAGGTC CCGC GACCCTCCCCGCCCGTTT   TCAAGCTTTCTTTTC 100 60
   Rru_A2817 3248584 .. 3248622 - -17.5  -4.08767   TCCATGCCGCCAAAA  GCGATCGGGCCGCCCTTC TTGC GAAAGGCGGCCCGAA-GC   GGACGGTTCGATGAG 100 50
   Rru_A2809 NONE
   Rru_A2808 3240182 .. 3240224 - -24.2  -4.59853   CCAATCCTTGAAAAA GCGATGCGACCGGATCGGGC CTT GCCTGATCCGGTCGCGTCAC CCCAGGTGAAGTCCG 100 46
   Rru_A2807 NONE
   Rru_A2806 NONE
   Rru_A2805 NONE
   Rru_A2804 NONE
   Rru_A2803 3234918 .. 3234975 - -11.4  -3.16088   AGACCGCATCAAAAG CGGCCTGACCGATGACGATGTCGA-GGC TTTG GCCGCCTACATCGCC-TCGATCAAGACG CACCCTTAAAGCAGC  69 31
   Rru_A2801 3233662 .. 3233675 -  -4.5  -3.63515   CGCGAGCTTGAACAA               CTGCGC TGG GCGC-G               CTCGCGGCCGGTCTG  55 428
   Rru_A2799 NONE
   Rru_A2798 NONE
   Rru_A2797 3231894 .. 3231912 -  -8.8  -2.63991   CGTAATGGAATTAAG             CTGACGGC CGG GCGGTCAG             TCCTGCTTGGCCGGG  56 22
   Rru_A2796 NONE
   Rru_A2795 3229111 .. 3229165 - -12.9  -3.33605   AAATACAAGGACCAA CTCGCCCCCCTGCCCAGCCGACTGGCC AGC GACCAATCGGC-ATA-AGGGCGGCGAG ACAGCATCGCTCTAA  76 37
   Rru_A2789 3223454 .. 3223466 -  -4.7  -3.59979   CCGCCCCACCCTAAA                CCCGG TGT CCTGG                CGTGGCGGCGAGCGC  52 8
   Rru_A2782 NONE
   Rru_A2781 NONE
   Rru_A2780 3213453 .. 3213504 - -19.4  -4.56597   GGGTCGCTTTAAAAA CGGCAAGCCGCGAGCGGAGGGACCG CAA CGG-CCGTCCGCTCGCGACATCCCA TCCCGCAAGGATTAG 100 37
   Rru_A2776 3210865 .. 3210890 -  -3.9  -3.63968   CGTGAAACGCCGAAA         GGGACGC-CGAC AAG ACCGCACGCCCC         GGGGCTCTCTGTCAG  51 37
   Rru_A2775 3209924 .. 3209945 -  -5.8  -2.73364   CCGGCAGGTGAACCA           GCCCCC GGGCAAGAGG GGGGGC            GACGGCGGAAACCCC  46 100
   Rru_A2774 3207610 .. 3207625 -  -7.5   -3.3903   GAATCATGTAAGTAA              GGCGG TTCGGC CCGCC               AAGGACCTTAGGCGC  56 33
        hisG NONE
        hisD NONE
   Rru_A2770 3204221 .. 3204237 -  -2.2  -3.22656   AAGGGAATCGACCAA              GCCC CTCAGCCCC GGGC              ATGCAGAACGCAGAT  43 14
   Rru_A2769 3203679 .. 3203693 - -11.4  -3.39505   AGGCCAGATCCATAA               GGAGCC TCA GGCTCC               TAAATGTTTCGGCGA  72 103
   Rru_A2768 NONE
   Rru_A2767 3201303 .. 3201316 -  -2.3  -5.00616   GCCCGCCCCAAAAAA               GTCGC CAAC GCCAC                CCGGGGGCGCTTCGA  75 326
   Rru_A2766 NONE
   Rru_A2765 NONE
   Rru_A2764 3198199 .. 3198212 -  -2.4  -3.04144   CTCTCATTTTCAATA               TCAG CCTAAC CTGA                AGTCCTGGGGGGTTG  41 196
   Rru_A2763 NONE
   Rru_A2762 3195090 .. 3195122 -  -3.9  -5.41746   AACTCTTCAAAAAAA      CGCACATCGCCCCCC GCA GGGCGGAAATCAGCG      AAAACCGAACCAATT  85 20
   Rru_A2761 3193265 .. 3193301 -  -5.4  -3.25088   TTTGAAAGCGATGAA   GATCAGCGATCCCTTTTT TTA AAAAAAGGAT-GC-GACC   GGAACAAAACTCAAG  50 74
   Rru_A2760 3192782 .. 3192797 - -11.8  -3.09834   GATTTCAGGAGCCAA              CGGGCG CAAG CGCCCG               GGTCTTGCGCTGTTA  68 141
   Rru_A2759 3190890 .. 3190909 -   -15  -3.53761   TAAGGGGGGCCGAAA            GACGGCCC TTGC GGGCCGTC             CCGGCTTATGACCCC  90 47
   Rru_A2756 3187999 .. 3188010 -  -5.8  -4.58283   GAAGGTTCTGAAAAA                TGCC CCTC GGCA                 AATATGGACCTATGA  76 177
   Rru_A2755 3187051 .. 3187076 -  -6.1   -3.3517   AGCCACTATATAAGA         TCGCCGAGC CTTGCTTT GCCCGGCAA          AAGTCGTTGGTTCCC  52 358
   Rru_A2753 3186037 .. 3186050 -  -2.3  -3.05046   CCATCTCTCCAAAAT               TCGTC GGTG GTCGA                CTGCGCACCGCCGCT  41 61
   Rru_A2752 3184819 .. 3184840 -  -7.9  -2.61548   GGCGACGATAAGCCA           TCGGCGGCG CAAA CTCCACCGA            ACCGAGAAAGACCGA  52 62
   Rru_A2751 3184223 .. 3184237 -  -9.2  -2.72991   CGACAGCGTCAACCA               CGGCGA GAG CCGCCG               CCGTCCCCGTCCCGG  57 80
   Rru_A2750 NONE
   Rru_A2749 3181670 .. 3181682 -  -3.3  -3.72576   CGCGCCTCGACCAAA                GGAAG CGT CATCC                GATCACCTCGACCGG  54 20
   Rru_A2748 3180860 .. 3180880 -  -7.5  -3.39931   ATAAGGGAAGACCAA            GGGGGCA TTAGCCG CGCCCCC            TTCACCCCGATCAAG  56 130
   Rru_A2747 3179916 .. 3179933 -  -7.7  -3.72576   GTCTCCCTGACCAAA             CCCCGAT TTCT ATCGGGA              CTCCGCTCCTATCGC  67 154
   Rru_A2746 NONE
   Rru_A2745 NONE
   Rru_A2744 3176829 .. 3176841 -  -5.5  -3.21934   CTTGGGCGATAAAAT                GGTCA CGA CGACC                TCCTCGCCAGGGCGT  50 15
   Rru_A2743 NONE
   Rru_A2742 NONE
   Rru_A2741 NONE
   Rru_A2740 NONE
   Rru_A2739 NONE
   Rru_A2738 NONE
   Rru_A2737 NONE
   Rru_A2730 3157424 .. 3157454 -  -8.2  -4.62069   CGCCTAGGCCAAAAA      CCATCGCCGCCGG GCTCAG CCGGCG-CGGCGG       ACGCGGCTCAGGTGA  81 10
   Rru_A2728 3155862 .. 3155875 -  -5.2  -2.52464   CTCCCTGGCAACGGA               CCGG GCCAAG CCGG                TCCCATCCTGTTCCA  42 111
   Rru_A2727 3155001 .. 3155025 - -12.7  -3.79787   CGATAGCAAGGCAAA          GCGTCGGCGCG CCC CGCTCCGGCGC          GCCCGGATTCGCCTT  85 47
   Rru_A2720 3145719 .. 3145739 - -16.1  -3.80573   GTCACCACGATGAAA            GGCCGCCAC GCC GCGGCGGCC            GATGCCTGAAGCCCC  95 90
   Rru_A2717 3140594 .. 3140615 - -15.9  -3.05384   CCCCTCCTGATCCAA           GACGGGGAG TCCC CTCCCCGTC            ATCACCGCAAAAGAA  83 168
   Rru_A2712 NONE
   Rru_A2711 3133511 .. 3133559 -  -5.2  -3.40403   TCTGCGCTACGACAA GGTGGTGATCATGACCGACGCCG ATGT CGACGGCGCCCAT-ATCGCCAGC TTGCTGATGACCTTT  53 459
   Rru_A2709 NONE
   Rru_A2708 NONE
   Rru_A2707 3129968 .. 3129980 -  -4.7  -3.09516   GTGTTGATGATGGAA                GCCGG CTG CCGCC                CCGATGGTCCGGGGG  46 45
   Rru_A2702 3125276 .. 3125294 - -14.6  -4.08216   CCAGCGGCCGGAAAA             CCCGGATG GAT CATCCGGG             TGGTCCATTCCAAAG  95 335
        secE NONE
        nusG NONE
        rplK NONE
        rplA NONE
   Rru_A2697 3122116 .. 3122137 -  -2.8   -2.8474   CCGTATGGATAACGA           GGGTCCGC GATCAG GCGGCCTC            TTCCTTCGTGGCATA  40 14
        rplL 3121620 .. 3121677 - -16.9  -3.58731   AAAATACTCGGGAAA GCCCG-AAGGCCGGTCGACAGACACACC AAC GGAGTGCCTGCCTTCCGGCCCTGCGGGA CGCCTCGGAACCCCG 100 44
        rpoB 3117257 .. 3117303 - -13.7  -2.73124   CCGGACCGCCCAAAT GCCTAAGGGCCCGCGCGCCGGA GTCA TCCGGGACGCGGG-CCTGAAAC GACTATTTAGAAGCT  73 32
   Rru_A2694 3112892 .. 3112922 - -15.5  -3.47526   CTAGGAAGCGAAACA      GGGCCGACAG-TCC TCGC GGATCCGTCGGCCC       CATCCTCGAATTCTC  93 83
        rpsL NONE
   Rru_A2692 NONE
   Rru_A2691 NONE
   Rru_A2690 3108324 .. 3108360 - -17.1  -2.87501   GTTCATCAAATACGA    TGGGCGCCCGCAGTGGC CAT GCCTGCGCGGGCGCCCG    GTAGGTTTTTTCTTA  85 38
        rpsJ 3107932 .. 3107946 -  -2.8  -2.52623   TCTGGGCGATAAGAC               CGGA ACGCATG TCCG               AATTCCTTGCTCGTT  37 48
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP 3103678 .. 3103694 -  -4.3  -2.84125   CCGACATATTCAAAC              CTCCCCG ATC CGGGCAA              TGAACTTGGTCTTCA  45 3
   Rru_A2680 NONE
        rpsQ NONE
   Rru_A2678 3102772 .. 3102784 -  -4.7  -2.88999   GCGGCAGACATCACA                GCACC TCC GGAGC                CAGCGAGATGATCTT  45 8
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
   Rru_A2672 NONE
        rpsE NONE
        rpmD 3099431 .. 3099441 -  -6.8  -3.60475   AAGCCCTACCTCAAA                 CGTC TTC GACG                 CGAACCAGGTGGGCG  60 10
   Rru_A2669 3098871 .. 3098911 - -22.5  -3.68222   CTCGAAGCGGAAGAA  TGGCCCGGGGGAGACGGCG CGA CGCCCCCTCCCCCAGGCCG  GAAATCTTTTAGACG 100 34
        secY 3097347 .. 3097367 -  -2.4  -3.13504   GTCCCATGAAAATGA            CGCGCTTG CCCGT CATCCGCG            TTTCCCCCGCAACTT  43 17
   Rru_A2667 3096679 .. 3096697 -   -11  -6.21477   AACACTAAAAAAAAA             CGCGAAAC GCG GTCTCGCG             CAGCCTTGGCCCGTA 100 103
        rpsM NONE
   Rru_A2665 3095682 .. 3095720 - -16.8  -2.53876   CCTGATCTCAAGGGA  CGAACCGCC-GAACCCC TTCGGT GGGGTTCCGGCGGCCCG   GAAACGGGTGTGGAG  83 81
   Rru_A2664 3094524 .. 3094545 -   -13  -2.74488   CAAGCATTCGAACGA           CGACCCGC CCTATC GCGGGTCG            CTTTCAGGCCGATCC  69 77
        rplQ 3093946 .. 3093975 - -17.1  -4.05788   CTCGCCCAAAGGAAA       GGGGCGCCTCTCC TCGC GGAAGGGCGCCCC        TCGTGTCGTTGGCGA 100 57
   Rru_A2662 3092315 .. 3092339 - -12.1  -2.71791   ATCCCTGTTCGAAAG          GACCGACCCTA TCC CAGGGACGGTC          AATCCGAAAGGCCTG  69 75
   Rru_A2661 3090337 .. 3090375 -  -7.3    -3.737   CAAGGGCGCAGCAAA  CCCCGCCCGGCCGCCG AGATCAAG CGG-GATCGGTCGGGG   CGACGACCAGGACAT  63 6
   Rru_A2660 NONE
   Rru_A2659 NONE
   Rru_A2658 NONE
   Rru_A2657 3084917 .. 3084956 -  -7.7  -5.31275   GGTCAGGATAAAAAA  GGGCCGGCATCCGTGGC GCGGCG GCGACGGATGCCGGGTA   TAAGGTCTTGCCCGC 100 47
   Rru_A2656 3084038 .. 3084090 -  -6.8  -3.14132   CTGCTGCGCCACCAA CTTCCCGCTC-CG-CCGGCCGGCCCC GAG GGCGACGGCCGGGCCTGACCGGGGAA AGCCGCCAAGCGCGC  54 42
   Rru_A2654 3083086 .. 3083110 -  -7.7  -3.72893   GACCTTCCCACGAAA          GCCAAGCCAGC CGA GCCGGCCCGTC          CATTGAAGGTAGAAG  67 98
   Rru_A2653 3082131 .. 3082165 -  -2.6     -3.67   CCAACCGGTAAAACA     GTCCGCAAGGGGCAGG GCG CGCGCCCCCCGTCAAC     ACGCGGGAAGCGGTG  49 196
   Rru_A2652 3081634 .. 3081644 -  -2.4  -3.31232   CGTGCCACAGAAAAG                 GGAG GGT CACC                 GGGTCACGCGGCCGA  44 29
   Rru_A2651 3080305 .. 3080344 -  -8.5  -3.85698   CGGGGTGGGGAGAAA  CACGGACAAGACCAACC TTTACT GGTTGGCCCCTGCCGTG   TTCTCCAAATGATCT  69 299
   Rru_A2650 3079801 .. 3079834 - -13.2  -5.00616   GCCCTTGTGAAAAAA    CTACTCCCGGGGGACG GATC CGCCCCCCGGGAG--G     TCAAGAAAGACGATG 100 98
   Rru_A2647 3076160 .. 3076214 -  -6.9  -4.04579   TCCAGAAAGAGGAAA TGGGCCTGCTTGCCGCCCTCGCCCA GGTCT TGGACGACTCCGACGATCAGGCCCT GGCCGCCCTTCGCGG  67 107
   Rru_A2642 3071561 .. 3071585 -  -6.4  -2.75765   AAGCTTACAGACAAG          CCTCGCAGGA CGGCT TCCTGCAACG          GAGAGGAACCGCGTC  50 168
   Rru_A2641 3070826 .. 3070836 -  -3.2  -2.77182   TTCTATAGTTAATTA                 CCAC CCT ATGG                 AAAGGGCCCCCTGAA  41 20
   Rru_A2640 NONE
   Rru_A2639 3068203 .. 3068226 -  -4.6  -4.05446   TTCGTCAAGGAGAAA          CTCTT-CGCGA TCA TCGCGCAAGAT          ACCCACCTGCGCGGC  62 445
   Rru_A2634 3062301 .. 3062312 -  -3.6  -3.25093   ACACCTCAAGCAAGA                CGGC CATG GCCA                 ATCTCCACGACAACG  45 4
   Rru_A2633 3061591 .. 3061624 -  -8.8  -2.71059   CGAACACCAAATGGA     CG-GCGGAAGGGGGA AATCG TTCCCCTGCCGCTCG     CCGCTCCAAGCGCCG  57 43
   Rru_A2632 3060858 .. 3060885 -  -8.4  -2.78547   CCAGGCGATGAATGA        GACCTCGCGCAGC GTC GCCCC-CGAGGTC        GACGAGATGGCGATG  52 343
   Rru_A2629 3058059 .. 3058075 -  -2.2  -3.71848   TTGGCTGATGAAGAA              CGCC TGGACCATC GGCG              CCAACAGCGTGAACC  51 396
   Rru_A2626 3055126 .. 3055167 -    -8  -4.19238   TCCCCAATTGGAAAA TGGCCCG-TC-GCCTGACCCG GGC CGGG-CAGGATGAACGGGCCG CCCGTCTGCGCATCG  74 430
   Rru_A2624 NONE
   Rru_A2623 3051660 .. 3051696 - -11.6  -3.48924   CCACCCCCGAGACAA   GCCGGCCGCGCCG GGATCGGCCTAT CGGCGCGGCCG-C    GTCCCCGGACGCCCC  74 490
   Rru_A2621 3049758 .. 3049792 -  -9.9  -3.72576   CGGGGTGTGAGCAAA    CCGGCCG-CCCTTCGG CATG CCAACGGCCCGGCCGG     GATTGTCCCGCCGGG  76 54
   Rru_A2615 3043881 .. 3043916 -   -11  -2.75844   CTGGGGATGGGAAAG    CGTCG-GCGCCGTCCGC GCA GCGGGGGGCGGGCGACG    GAGAAAACTCTAGAT  65 113
   Rru_A2614 3042771 .. 3042792 -  -2.9  -5.15969   CCGCAATCGAAAAAA           CCAATGGCG CAGC CGCAATCGA            AAGAACCAATGGCGC  78 152
   Rru_A2613 NONE
   Rru_A2612 3039381 .. 3039398 -  -8.3  -4.57569   GGATTCCGGCAAAAA             CGGCCGC AAAC GCGGCCC              GTAACCCCACGCCAG  79 104
   Rru_A2606 NONE
   Rru_A2605 NONE
   Rru_A2604 3027433 .. 3027451 -  -7.4  -2.74563   CCGATATCCGAACCA             TCGGCGAA GAC TTCGACGA             CAATCCCCGGCTCAG  51 252
   Rru_A2601 3022605 .. 3022615 -  -2.4  -3.62518   TCAAAGAGCTTGAAA                 GCCG CAT CGCC                 TCGCTGACCTTCCCG  51 491
   Rru_A2596 NONE
   Rru_A2595 3016898 .. 3016929 -  -6.4  -3.29511   GGGACGGTGGGATAA      GGGTGCGCGCCGGCC TGT GGCCG-CGCCAAACC      GGGACGATCGGTCCA  56 238
   Rru_A2594 3014916 .. 3014932 -  -6.5  -3.09516   CGGCTCAGGATCGAA              CGCCG GGACGGG CGGCG              ACCACGCCGCGATCC  52 210
   Rru_A2593 3012986 .. 3013015 -  -8.5  -3.65812   CTTTCTGGAACAGAA       CTGGCTGGCCGGCG GCG CAACGGCC-GCCAA       CCGCGCCCATTTCCT  65 158
   Rru_A2591 3011438 .. 3011479 -  -3.5  -3.00946   GGCGGGCATAAAGCA CCGGAT-CGGCCCGCCACAG GCC CCGCAACCGGCCGTAAGCGG CCAGATCGACGGGCG  43 55
   Rru_A2590 NONE
   Rru_A2589 NONE
   Rru_A2588 NONE
   Rru_A2587 NONE
   Rru_A2586 NONE
   Rru_A2585 3005959 .. 3005996 -  -4.7  -2.72144   CCATCGCGGCGAAAC   GGGCCTGGGCGGCAAGCA TGG TGCTCATC-CCCGGGCCA   CCCGGGCCGTGCCGT  43 12
   Rru_A2584 NONE
   Rru_A2583 3005166 .. 3005188 - -11.2  -3.31461   CAGTCATTTGGACAA           GCGCGCCGAC CGG ATCGGCGCTC           GACTCATCATCGGCG  72 48
   Rru_A2582 NONE
   Rru_A2581 3002503 .. 3002518 -  -4.6  -2.57988   AAAGGGATCAAGGCA              CAGGGG CTTA CCCATG               ACCGCCGTCCCGCAG  43 17
   Rru_A2580 NONE
   Rru_A2579 NONE
   Rru_A2578 2998896 .. 2998910 -  -7.8  -3.14132   CGCGGCGGCGATGAA               CTGGGC CAA ACCCAG               CAGGGCAACAACAAC  54 466
   Rru_A2574 2993705 .. 2993748 -  -4.2  -2.76162   GATCGGACGTCAAAG GGAGCGGGTCCGGGGACCGT CAGG ACAGGCTGCGGGCCAGCGCC GCCCGGCGCTCGGCC  43 1
   Rru_A2573 NONE
   Rru_A2572 NONE
   Rru_A2571 NONE
   Rru_A2570 2988688 .. 2988714 -  -2.1  -3.11579   ACGAAAACCAAACCA         CGCGCCCGGTC AGGCG AAGAAGGCGCG         AACCTTCTCCAGCGC  41 8
   Rru_A2569 2988211 .. 2988230 -  -4.2  -3.01791   ATCGGCGGGGGAAGA            GCCATGGGG GAC CTCC-TGGC            GGCTAAGCCTTGGAT  46 40
   Rru_A2568 2987856 .. 2987873 -  -8.3  -3.53444   TTATCCTTCTTCAAA             CGGCCGC CCCC GCGCCCG              TCAAACGGAAAAGCT  62 26
   Rru_A2567 NONE
   Rru_A2566 2986321 .. 2986331 -  -6.8  -2.57132   TTTCCGCGCGAGAAT                 GTCG TGT CGAC                 GGTGGGCGCAGTGGC  49 60
   Rru_A2557 NONE
   Rru_A2556 2972334 .. 2972347 -  -3.8  -4.37092   AGGGGCGTGAGAAAA               GCGA AAACCA TCGC                CACCCACCGCACCCG  65 301
   Rru_A2555 2971266 .. 2971292 -  -2.2  -3.74447   CAAAAAAGTATACAA         CCCTACAGATAT ATT ATTCCTGGAGGA         AAGGCCCCATCGCCT  52 40
   Rru_A2554 2968993 .. 2969044 -  -4.8  -3.78775   CGCTCGACGATGAAA CCCAGGTCCGCGCCCAGGCCCAGG CCTG CCTTGACGGGGCCGAGGATCTTGG CCTGCGCCGGCTGCG  58 258
   Rru_A2551 NONE
   Rru_A2550 2965532 .. 2965563 -  -4.9  -3.31461   TATCGATTGGGACAA      GGGCAAGGCGGTG CTTCAC CTGCGCCGCGCCC       TGGGGGTGGATGGGG  49 252
   Rru_A2546 2959770 .. 2959807 -  -8.4  -3.45027   ACGGGCGAGCAAACA  GGACG-CGGCGGG-GCGA CTCT TCTCTCCCGCCGTCACCC   GCCCCGGATATCGGC  62 20
   Rru_A2541 2954382 .. 2954426 -  -2.6  -3.91084   CGACCTTCAATCAAA GCGCCTTCAACCTGGGCAACG CCAT CGGCGCCTGGGTTGGCGGC-C TGCTGCTCAACGCCG  56 160
   Rru_A2533 NONE
        flgE NONE
   Rru_A2531 NONE
   Rru_A2530 NONE
   Rru_A2529 NONE
        flgL 2942104 .. 2942138 -  -6.2  -4.25104   CCGCGTGCACGAAAA     CGCCCGGCCGCGCC CGCCCTT GCCGCTGCTAGGCG     CCTGGACGGCGGTGT  70 445
   Rru_A2526 NONE
   Rru_A2525 NONE
   Rru_A2524 2938603 .. 2938640 - -21.3  -4.72272   GGCGGCCATGAAAAA   GGACCGGACGGCGCTCC GTTG GGAACGCCCTCCGGCCC    TTACCGTCAGGTGCG 100 41
   Rru_A2522 2937077 .. 2937097 -  -4.5  -4.82901   CTTCCTGCACAAAAA            GGACGCCGG AAC CCGGCCCGC            AAACGGCGTGGCCGT  79 357
   Rru_A2519 2929188 .. 2929200 -  -5.5  -3.53012   TGTTCTCGCGCGAAA                GCGAT GGC ACCGC                CATTGGCCTGATGTG  54 258
   Rru_A2517 2927204 .. 2927216 -  -4.7  -3.14132   GGTTTTCCCGATCAA                GGCCC CCC GGGGC                GTTCAAGCCGTCCCG  47 88
   Rru_A2514 2922691 .. 2922704 -  -9.5  -6.09196   CGCAAAATAAAAAAA               GGGCC CAAG GGCCC                CTTGTCGTCCGTCGC 100 102
   Rru_A2513 2921166 .. 2921185 -  -3.5  -3.60048   CTTTTCCGAAAAAAG            CCCCG CTGGCCCTCT CGGGG             TCTGGAGCGAGCGAT  51 43
   Rru_A2512 2920075 .. 2920109 -  -9.9  -3.05384   CTTGGGCGCAGCCAA    GCTGATCGGCGAGCGC CTGC GCGC-CGCCGTCCAGG     ATAAGCCGCTGTCTT  60 244
   Rru_A2506 2912533 .. 2912555 -  -9.2  -3.50853   GCTCCCCAACCACAA           GATCGACG CCCTGCT CGTCGATC           TTTACATGGCGCCGA  64 336
   Rru_A2503 2908940 .. 2908961 - -10.1  -2.61264   GGGCCTATGGACAAT           CAAGCCCGC GCCT GCGCGCTTG            GCTATGGACCCATCC  57 310
   Rru_A2497 2903507 .. 2903554 - -13.2  -4.62069   TGCGGATCCGAAAAA GGGAAGGAACGCGGCGGGGACC GGCG GGCCCCCGCCCCGTCACACCGC CTGTTCTTTGGTCTT 100 17
   Rru_A2496 NONE
   Rru_A2495 NONE
   Rru_A2494 NONE
   Rru_A2493 NONE
   Rru_A2492 2897878 .. 2897908 -  -8.1  -3.14132   GCTGTGGCTGACCAA       CCCGGCGGCGGTC TTCCT GACCGGCGCGGCG       ATGGCCGCCATCTCG  54 135
   Rru_A2490 2895580 .. 2895590 -  -6.8  -3.64703   TTCGGTGGACCCAAA                 GAGG ACC CCTC                 GGTCAAGGAGCCGCC  61 356
   Rru_A2488 NONE
   Rru_A2487 2890704 .. 2890714 -  -2.4  -4.18018   CTCGGTGATGGAAAA                 GGGC TTG GCGC                 GCAGCTGCCCGGTTT  62 297
   Rru_A2480 NONE
   Rru_A2479 2879690 .. 2879728 - -18.8  -3.37283   CAAAGGGGGGAAAGA   TCCCGCCCGTTCCTTTCG CTG CGCGCGGAACGGGCGGGA   AACGACGGTTACGCG  95 34
   Rru_A2478 2878619 .. 2878653 - -25.2  -3.91084   TGATCGTGAAGCAAA     TCGTCGCCGCACTCTG GAC CAGAATGCGGCGACGA     TTTTATTTAGTCCGC 100 32
   Rru_A2472 2870709 .. 2870753 - -15.9  -4.56597   TGCGGGCGTTAAAAA GAGAGCAAACGGCGTTAAAGG ATC CCTTTAACGCCGTTTTCTTTA GGGATCGGCTTATTT 100 35
   Rru_A2467 2866827 .. 2866885 - -30.7  -2.71712   TCGCCGGGGGGAAAC GCCA-AAAAGCCGCGTCCGGATCTTTCC TTGG GGGAAGATCCGGACGCGGCTTTTATAGC ATAAGCTCAGAGGCG 100 64
   Rru_A2463 NONE
   Rru_A2462 2861070 .. 2861087 -  -3.3   -3.9461   CGTCTCCAAGAAGAA             CGACTGG AGCG CCACCCG              CGTCTGGTACGGGCC  58 187
   Rru_A2456 2854436 .. 2854459 -   -16  -3.55444   GCTGGACGCCTGAAA          GCCCCGGAAC CCAA GCTCCGGGGC           TTTCTTGTTTTTTCA  93 66
   Rru_A2449 2847836 .. 2847856 -  -2.4  -3.79251   CAGGCGATGAGCAAA            GCCGTCGA CGAGC TTGCCGGC            CATATCGCCCCCGGT  54 62
   Rru_A2440 2837294 .. 2837308 -  -2.7  -3.86346   TCATCGGCCTAGAAA               CCGGG GTGTT CACGG               GCGCCAGGGCTGATA  54 20
   Rru_A2439 NONE
   Rru_A2438 2835997 .. 2836008 -  -7.2  -3.06261   TGGTAAGCCTCAAGA                CCCG GGAG CGGG                 CTGTGTCGCGAGGAA  52 8
   Rru_A2437 2835281 .. 2835298 -  -9.1  -2.71712   TCGCCCGGCTCAAAC             GC-GGCGG TTT CCGCCTGC             TCGACACCCAGTTCA  55 218
   Rru_A2432 2831091 .. 2831126 -   -22  -4.30576   TCGTCAGGATCAAAA    CGCCGATGGGGCGGCAA AAC CTGCCGCCCCATCGG-G    TAAAAACGACCGGCT 100 52
   Rru_A2431 2829408 .. 2829439 - -15.2  -3.24747   GTCGCAGATCATCAA      CGGCCATGTCGG CATCACCC CCGACACGGCCG       TGCGCCTTGGCGAAG  78 195
   Rru_A2424 2823931 .. 2823943 -  -3.3  -2.56715   AAAAAAGGCAAAAGG                GAACC CAG GGTGC                TTTTAGCTGCCCGCC  40 28
   Rru_A2423 2822247 .. 2822271 - -11.3   -3.4072   CACTGTCCAGGATAA          GGCCAGCGCCG AGG CCGCGGTGGCC          CGCACCATCGGCCCC  68 479
        argC 2820264 .. 2820284 - -16.1   -4.8622   TTCTTCAATGAAAAA            GGGGCGCCC GAC GGACGCCCC            TTATGTCGCTCAGGG 100 35
   Rru_A2420 2819472 .. 2819495 - -10.9  -5.74122   CACGACACAAAAAAA          CCGCCACGG CTGTTT CCGAGGCGG           TCGTGCGGGAAGGAA 100 197
   Rru_A2419 NONE
   Rru_A2418 2817984 .. 2818006 -  -3.3  -4.25104   CGGGTCGTATCAAAA           TTGGTCGCG GGGGG CGCGATCAG           ATGTTGCGTTTGTCG  62 22
   Rru_A2417 2817107 .. 2817130 - -13.8  -4.34402   CCGTTGATAGCAAAA          GGCCCCCGAA GATC CCCGGGGGCC           TTTTTTTTCAGTATC 100 54
   Rru_A2412 2812685 .. 2812695 -  -5.4  -2.91924   TGATCCGGTAGAAAT                 CATG GTC CATG                 GCTGGTTCATTCCGT  48 188
   Rru_A2411 NONE
   Rru_A2410 2810116 .. 2810164 - -15.6  -2.66316   CGTTTCACCAGATCA GAGCGGCGAA--GAGACGGAAA ATCGCTG TTTCCGTCTCCGCTCGCCGCTC TAGAACTGTTCGATG  78 25
        glpX 2808825 .. 2808856 - -10.8  -3.28712   GTCCCCGGGTGAGAA      CGGCGCGGGGGAAAC CTA GTCCCCGCC-CGCCG      CCCTGACAGACTGAT  68 91
   Rru_A2408 2806935 .. 2806946 -  -3.6  -4.84918   CTGAGAAAGAGAAAA                CCCG TTTT CAGG                 AGCAGGGGGCGACGT  74 21
   Rru_A2401 2795894 .. 2795908 -  -2.1  -2.75891   AGATTGACGTAACGA               GATGA CTGGT CCATC               GGTGGACTCTCCCTA  39 149
   Rru_A2400 2794435 .. 2794460 - -16.2  -5.51165   AAAAGCTCAAAAAAA         GACGCGGAGG GGAGAG CCTCCGCGTC          TTCTGCTTTGACCGG 100 72
   Rru_A2397 2788192 .. 2788202 -  -2.4  -2.55351   CTTGGTTAGACGAAC                 GGCC CCG GGCT                 TTCCCCCATTGTTTT  38 47
   Rru_A2396 2787128 .. 2787141 -  -9.5  -2.71791   ACTTTTTCCCGAAAG               CCGCG TTAG CGCGG                ATCGGAGGGTCCGGA  57 17
   Rru_A2395 NONE
   Rru_A2394 NONE
   Rru_A2393 NONE
   Rru_A2392 NONE
   Rru_A2391 NONE
   Rru_A2390 NONE
   Rru_A2389 NONE
   Rru_A2388 NONE
   Rru_A2387 2778540 .. 2778550 -  -8.2  -3.55622   TTGAACGCCCTTAAA                 GGCC ATC GGCC                 GGAAAGGCCGCCAGC  62 10
   Rru_A2386 2777916 .. 2777935 -    -2  -2.78547   GGATTTCATCAAGGA            CCCTTTTC ATCC GAACGGGG             GGGGCGGCGGGACGA  39 137
   Rru_A2385 2777007 .. 2777017 -  -2.4   -3.3782   GATCTAGGGAAGCAA                 CCCG TGG CTGG                 TCAGAAAGTCCTTGG  44 3
   Rru_A2384 NONE
   Rru_A2383 NONE
   Rru_A2382 NONE
   Rru_A2381 NONE
   Rru_A2380 2771902 .. 2771941 - -14.2  -2.64155   GCTCGCGGAAACGGA  TGGCGGAGGGCCCCCTCA AAGA TGGGACGGCCCTCCCCCA   ACGCAACCGGAGTAT  72 94
   Rru_A2379 2770761 .. 2770795 - -20.3  -2.62396   TATGGCCCTAGATCA     GGATGATTTCAGGTC TGATC GACCTGAAATCATCC     TGATCTAAATCTAAA  95 93
   Rru_A2378 2769713 .. 2769736 -    -3  -3.57561   TGCGAAGGCCGGAAA          GGGGAAGGAGG TGC CCTCAG-CCCC          AACCTGCGGAGGTCA  49 163
   Rru_A2377 2769373 .. 2769389 -  -3.5  -4.08216   GCACTGCGGCCAAAA              GGTCCCG CCG CGCGGCC              GGTGACAGTTTCGCC  59 45
   Rru_A2376 2768829 .. 2768852 -  -3.8  -3.60048   CCTGCGCCAAAAAAT          CGG-TCCTTCC CGC GGAAAGCGCCG          GCGGATTGGCCCGGG  51 277
   Rru_A2369 2760669 .. 2760682 -  -9.5  -3.53012   CTGGCCGCCCTGAAA               GCGGC CGAG GCCGC                CTTTCCTCAGCGCGG  66 32
   Rru_A2364 2754375 .. 2754394 -  -3.5  -3.83998   CGAGTTCAGATCAAA            TGATCCG CGTTAC CGGATCG             CCTTTACCCCGGTTT  54 44
   Rru_A2363 2753486 .. 2753500 -  -6.4  -3.57792   GTAGCCATGGTGAAA               GCTCTC CTC GAAAGC               GGGTGGGGCCGAGCG  60 59
   Rru_A2362 2752937 .. 2752984 - -18.3  -3.92869   TGAGCGACGGATAAA CCGGCGCCCGCCGCGCGCCGC AATCGG GCGGCGAACGGCGAACGGCGA ACGGGCAGGAGTTAA 100 37
   Rru_A2361 2747857 .. 2747908 -    -7  -2.71144   GATGGGCCCCAAGGA GGCGATCTTCGGCGCCCCGGCCCA CCCC TATACCCAGGCGCTGATGGCCGCC ACCCCCAAGCTTGAT  48 258
   Rru_A2355 2741599 .. 2741644 - -14.7  -4.10007   ACAAGGTTTGGAAAA GCTAGGGCGATGCGCGGGGAC GAGG ATTCCCGCAGATCGCCCTAGT CGGGCCCGTCGTCCC  95 21
   Rru_A2353 2738106 .. 2738116 -  -4.6  -3.59262   GTCCACAGCCTTAAA                 GGCA CCG CGCC                 TTAAAGATTGGTCGG  54 26
   Rru_A2352 2737246 .. 2737275 - -10.1  -3.16177   ACTTGAGATAGGCAA       GACCGCT-GGAAGG AAC CCTTCCGAACAGTC       CAGGCGCATTCCGTT  65 483
   Rru_A2350 2728584 .. 2728597 -  -3.8  -2.70932   CCTTGTCGCCAACGA               CCAG GGCGCG CTGG                ATCAGCTGATGGGCT  41 27
   Rru_A2347 2720682 .. 2720693 -  -2.2  -4.39571   GTCAGAAATTGAAAA                CGAA ACTG CTCG                 AGGCCATAAAGTTAT  63 0
   Rru_A2346 2719693 .. 2719707 -  -4.2  -2.97503   CGAACACAGAAGAAT               GCGC ATGGAGG GCGC               CACCCCCCCCTAGGA  45 35
   Rru_A2345 2718603 .. 2718630 -  -2.6  -4.67353   CGAGGGAGCCAAAAA        CGAAGGGGGTCA CGGA TGACGACCTTCC         TTGATAGGGGCGGCT  68 62
   Rru_A2344 2717343 .. 2717360 -  -7.7  -4.16842   CGCATCGGCAAGAAA             GACAGAG GAGG CTCCGTC              TGTTTGGACAGAATG  74 396
   Rru_A2340 NONE
   Rru_A2339 2710447 .. 2710492 -  -2.7  -3.69684   AAACCCACTGAACAA GGGGCAGTCTATATGAAACTAA GTC TTATTTTCA-ATACACAGCCCG CGCACGGCTGAAATG  49 90
   Rru_A2338 2709256 .. 2709270 -  -2.7  -5.60993   TTCGGTATAAAAAAA               CACCC CCATC GGGAG               CTTCTGAAGGCGGGG  95 227
   Rru_A2337 NONE
   Rru_A2336 2705250 .. 2705291 -    -7  -3.96531   CTAGACAGCGAGAAA CGGGCCGGCTTGGGGCAG ACAAAG CAGCCGCATGCAGGCGCG  CGGATGGGGGGGCCG  65 59
   Rru_A2334 2703325 .. 2703338 -  -3.7  -4.53602   GTCACAGGAAATAAA               GGCCC TAAC GGGCG                CACCACATTTCAAAA  68 16
   Rru_A2316 2680190 .. 2680239 -  -7.7  -3.01712   CTTGCGGCCGTAACA TCCGGGAGGACGCGGAGAGCC CGGCGATC GGTTCTCCGCTCGCCGCCGGA GAGTCTTGAGATCAA  56 51
   Rru_A2311 2674553 .. 2674566 -  -9.5  -2.71712   GCGGCGGCGGGAAAG               CGGCG GGCC CGCCG                GGGTCAGGCGAACGA  57 29
   Rru_A2308 NONE
   Rru_A2307 2670179 .. 2670213 -  -5.8  -4.08216   GCATTTCCTGGAAAA     CCTGAAAAAACACGAT GGG ATCGAATTTTTCCATG     GGTCGGGTCCTCACC  65 42
   Rru_A2306 2669781 .. 2669804 - -18.2  -3.97947   GCGACCGATCAGAAA          GGCGTTGCGC CGGG GCGCAACGCC           TTGAGGGATCGCAAG 100 83
   Rru_A2303 2665056 .. 2665079 -    -3  -2.71712   CCGGTCCCCGGAAAG          CGCGACCC GATCGGAG GGGCCGGG           GGTTAGTAGCCCCCC  39 28
   Rru_A2302 2663813 .. 2663857 - -19.4  -3.72576   CGGCGGGGGAGGAAA GCCGGGGCGAGAGC-C-TTGCC GAT GGCAAAGCGCTCCCGCCCCGGG GCCGAAAGCGAAGGA 100 56
   Rru_A2301 NONE
   Rru_A2300 NONE
   Rru_A2299 NONE
   Rru_A2298 NONE
   Rru_A2297 2658150 .. 2658189 - -10.9  -2.52676   GAGCCCGCTAACCCA GACCCTGGCGGAAAAG-GG ACGA CCGCTTTTCCGCCAGA-CC  GTGCCTTTCCCTAGG  64 36
   Rru_A2293 NONE
   Rru_A2292 2651945 .. 2651955 -  -2.4  -4.14392   GGGCAATCTGGAAAA                 CGCC GTG GTCG                 ATCTGGCCAAGGCCA  58 449
   Rru_A2288 2646630 .. 2646640 -  -3.2  -3.05463   ATGTGGTCGATGGAA                 TCAC TCA GCGA                 AATCAGACTCACAGG  43 34
   Rru_A2287 2646189 .. 2646200 -  -5.8  -4.13945   AGGGGGAGGTGAAAA                GACG GAGG CGTC                 GGGCCGTTGAACCCC  65 106
   Rru_A2286 NONE
   Rru_A2285 NONE
   Rru_A2284 NONE
   Rru_A2283 2642239 .. 2642264 -  -3.1  -2.94032   AGGTTTGAAGGAAAG         GCGTCGGGGGA TCGA TGCGACGACGC          TCAGGCCGAGGCGGC  42 26
   Rru_A2282 2641853 .. 2641863 -  -4.6  -2.79175   AAGCCGGACGGAAAG                 CCGA TCA CCGG                 GGGCACGAGCCGCCG  43 49
   Rru_A2281 2641053 .. 2641066 -  -9.5  -4.13014   CGGAGAGGCGTAAAA               CCGCG TCGG CGCGG                CACAGAACTTAGACT  76 116
   Rru_A2280 2640172 .. 2640187 -  -3.2  -4.57569   GTATCGCCGTAAAAA              TTTCGC GGAA GCGGAA               TTATCGGAACCTGAG  68 108
   Rru_A2279 2638924 .. 2638935 -  -7.2  -3.53091   ACCGCCCGCCTGAAA                GGCC AGAC GGCC                 TTCGCCGCTGTTCGC  58 403
   Rru_A2277 2635569 .. 2635583 -  -2.8  -3.36655   TGAGAACGAAAGAGA               CCATAA CGA TCACGG               CGCCAGGGGAACGAG  44 20
   Rru_A2276 NONE
        nikC NONE
        nikD NONE
        nikE 2632079 .. 2632108 - -14.3  -3.01712   GCGCCGCGCCTAACA       GGAAGGGGGGC GCCACCTA GCCCCCCTCCC        CGCCCCTCGCCTCAC  80 37
   Rru_A2271 2630629 .. 2630643 -  -4.2  -4.21073   CTAAAAAAATAAAGA               CGGG GGAAAAG CCCG               GAGGCCGCTCAACAG  65 34
   Rru_A2270 NONE
   Rru_A2269 NONE
   Rru_A2268 2628693 .. 2628713 -  -7.5  -2.57092   AACTGCAGCAATCCA            GACCCGCTC TAA GAACGTGTC            TAAGCCTCGGCGCTG  49 25
   Rru_A2267 NONE
   Rru_A2266 NONE
   Rru_A2265 NONE
   Rru_A2264 2624857 .. 2624896 -  -9.2  -3.04144   TTCTCATCTGGAAGA  CTGTGAGGGGACCGGCTC CCCC GAACCGATCCCCTCGTAT   CGGACGGGGGACAAG  60 78
   Rru_A2263 NONE
   Rru_A2262 2621434 .. 2621455 -  -3.7  -3.61244   CACTGGAGAAAGCAA           GATGACTCT CACG AAAGGCATC            GCCGCGATTGTCGCC  51 222
   Rru_A2260 2620655 .. 2620665 -  -8.2  -3.28712   CGCCCGCCCGGACAA                 CCGG GGG CCGG                 ACAACCGGGGGAACG  59 54
   Rru_A2259 NONE
   Rru_A2258 2619190 .. 2619233 - -23.2  -4.11216   TTGGGAGCGCTAAAA CCCACGAAGGCCCCCCGGTC GGCA AACCGGGGGGCCTTCGCGTA AGGCTATGGGCGTAA 100 43
         upp 2616542 .. 2616592 - -16.2  -4.54343   ACAAACTCAAACAAA GGGATCCAGGGTCTGTCCGCTTCA GCA TCAAGCGGACAGACCCTAAGCGCC GATCGCGCGGCCCTT 100 66
   Rru_A2249 2611321 .. 2611368 - -17.8  -3.17051   GCTTGACTATCAAGA CCTTAGGACGGCGTGCGGGG-AC CAA GCGCCCCGCACGCCGCCTTAAAA ATATCAGTCCGGGGG  90 64
   Rru_A2248 2610243 .. 2610265 -  -3.3  -3.22339   ATAAAACCCCATGAA           TCCGTTCGC CTGAT GCTGACGGA           CCCGAGCGGGGACAT  45 284
   Rru_A2247 2609443 .. 2609469 - -20.2  -3.05384   TGTTTTGGCATCCAA         GGACGCCCTGCC TTA AGCAGGGCGTCC         GTGAGTACGACCATC  95 154
   Rru_A2245 2606378 .. 2606398 -  -6.7  -3.14132   GTTGGCCGTGATCAA            GGCCGGTGA ACA TCCCCGCCC            ACCATGGAGCCGTAG  54 1
   Rru_A2244 2603665 .. 2603690 - -14.7  -2.89971   CCGAACAATGAAGGA         GGGGCGACCCA AAGC CGGATCGCCCC          TTTTCGCACAGTCTT  79 52
   Rru_A2243 NONE
   Rru_A2242 2601895 .. 2601950 -    -9  -2.72043   AATCCTGTTTGAAAG GGGTCGGAAGCCGCGAGCGGAACACCG GGGAT CGGGGT-CCGCTCGCAGC--CCTACTC GTCGTCGGAGGGGCG  57 20
   Rru_A2241 2601545 .. 2601562 -  -4.7  -3.61715   GAGGCCTTTTAACAA             CCCCGAC GGGA GCCTGGG              GTCGCGATCACGGCG  54 33
   Rru_A2240 NONE
   Rru_A2239 2599511 .. 2599540 - -12.7  -2.90075   TTGCTGGCAAGGACA       GGGGGGCGCCTAG CGCG CCTGGCGCCCCCG        GAAGGGTCAACGACC  70 32
   Rru_A2238 NONE
   Rru_A2237 2597652 .. 2597698 -  -7.8  -3.71672   GGCCATTAAAACCAA GGCCTTCGTCCGAGGGGGACC GACAAG GGCCGCCCTCGGGCGC-GGAC TCACAGATAGCCCAA  67 26
   Rru_A2235 NONE
   Rru_A2234 2593275 .. 2593317 - -12.9  -3.86822   CAACGTGCCGACAAA GCAAATC-CCG-CGCGGTCTG CAG CAGACTGCGGCGATGATTTGC GACGATTTTCTTGGT  86 149
   Rru_A2232 2591374 .. 2591427 - -15.3  -5.14563   CTCTTCATGAAAAAA CCGGCACTCACCTTGATCCGCCACGC GAG ACG-AGCGGAGAAAGAGGAGTGCCGG TTTTTTTCGTTGCCC 100 106
   Rru_A2231 2589952 .. 2589965 -  -2.3  -4.13945   ATTGGTACGCCAAAA               CTTGG CCGG CCGAG                CGTTTCATCGAGCTT  58 514
   Rru_A2229 NONE
   Rru_A2228 2586836 .. 2586850 -  -7.1  -3.57144   CTGTTCACGGTGAAA               GAGGC CCGGC GCCTC               TATGCCTTTGTCGAG  58 229
   Rru_A2223 2582437 .. 2582478 - -22.3  -4.08216   CGAGCTGTTTTAAAA GCCAAACCCCCGGCCGC TTCTTCTC GCGGCCGGGGGCTGGGC  CCGTCAGGCCGCCGA 100 29
   Rru_A2215 NONE
   Rru_A2214 2573323 .. 2573351 -  -6.7  -3.05463   AGCGGCGTGAGGGAA       CGGGAGG-AACG GGGAAG CGTCACCCCCCG        TCGGCTAGGCAAGCG  52 16
   Rru_A2213 2571178 .. 2571194 -  -2.1  -3.62224   ATATTTGTGTAATAA              CCCACGG GTC CCGCTGA              CCGGATTTATCCCCG  49 133
   Rru_A2212 2570045 .. 2570072 - -18.4  -4.27316   CGTCGGAATGGAAAA        GGGGGCGGCCCC CGCA AGGACCGCCCCC         CACCCTCAAACCCAC 100 53
   Rru_A2211 2568759 .. 2568778 -   -15   -4.4261   CCCGCAATAGCAAAA            GGGCGGTC CGAA GACCGCCC             CCCGCCAAACAAAAC 100 57
   Rru_A2210 2567907 .. 2567951 -  -3.4  -5.45652   ATCGTTAAGAAAAAA GGAGCGGACCCTCTGCGATA AAGCG TACCTCACAGGGTCCGCGGG AAGTCGAGTGGTGGA  88 105
   Rru_A2209 2564551 .. 2564580 - -10.1  -4.93877   GGCGATCAAAGAAAA       TCCCCAGCGATCTG AAC CAGATCGC-GAAGA       CGATTTTCTTGGCTA 100 89
   Rru_A2203 NONE
   Rru_A2202 2557101 .. 2557142 - -15.1  -3.01712   TTTTCCGGCCGAAGA CGCCAACGGCGGCCCGAAC CCTG GTTCGAACCGCCGTCGTCT  GATCGTTTCGCGTGC  80 56
   Rru_A2201 2555236 .. 2555265 - -18.6   -5.4756   AACGGGAACAAAAAA       GCGCCGGCTCCC TGGTGG GGGAACCGGCGC        CCGTTCTCCGGGAAA 100 53
   Rru_A2200 2554668 .. 2554678 -  -8.2  -3.39995   CTGAAAAAAGATATA                 GGCG GTC CGCC                 CTTTCGTACAATCGC  59 56
   Rru_A2199 NONE
   Rru_A2198 2552248 .. 2552273 - -13.3   -3.6187   AGTCAAGCAAATCAA         CGCCGCGCCCTG GTT CAGAGCGCG-CG         GAATTGGCTTTAGGG  88 35
   Rru_A2196 NONE
   Rru_A2195 2549976 .. 2549986 -  -4.6  -4.07568   GTCTTTTCGGGAAAA                 GCGG TGC CCAC                 TTTTCCCTGACAAAC  61 167
   Rru_A2191 2544054 .. 2544109 -  -4.8  -3.59627   ATCAAATCGCGCAAA CCCCGACAG-AAGACA-TCCCCCC TGGGGCGTTT GGGGGGACCGCCTTGCCGCCGGAA AGACCCTTAGGCGCC  54 32
   Rru_A2190 NONE
   Rru_A2189 2543271 .. 2543286 -  -2.4  -2.71712   CGTCGCTGGGGAAAT              GCCCCC TGAC GCGGAC               GGCCCCCGCCTGAGC  39 103
   Rru_A2188 2542945 .. 2542957 -  -3.3  -2.84325   TTCGGCGAAACATTA                TCCTC GAA GAGGG                CGGTCATGACAGGAT  42 172
   Rru_A2187 2541057 .. 2541068 -  -2.2  -3.90048   TCGGCGCCAAAAAGA                TCCG CGGA CGAA                 ATTGGCCTCTATCTT  54 419
   Rru_A2185 2536735 .. 2536781 -  -2.7  -4.65747   GAAGGGTGAAGAAAA TAGCGGCGGGCGGCTTCGCGCA GGGC TG-GCGTCGGCGCCGGCGGCTT GTCCAGAAGTGCTAG  68 157
   Rru_A2184 2535930 .. 2535941 -  -7.2  -3.32202   CATCCCGACACAAGA                CCGG TCGA CCGG                 AAACGCCGCATTTTA  56 166
   Rru_A2183 NONE
   Rru_A2182 NONE
   Rru_A2181 2532799 .. 2532824 - -21.9  -3.57561   GCCTAATCGCGCAAA         GGGCGGGACCG CTGC CGGTCCCGCCC          TTTTTCGTAATCAAT 100 57
   Rru_A2178 NONE
   Rru_A2177 NONE
   Rru_A2176 NONE
   Rru_A2175 NONE
   Rru_A2174 2524926 .. 2524944 - -11.6  -3.04144   TCCTGACCTGGAAGA             CCGGGGCG ACA CGCGCCGG             GGGAAGGGGTGCGAT  68 41
   Rru_A2173 NONE
   Rru_A2172 2522338 .. 2522365 - -15.5  -4.04206   TTACGGTCACAGAAA        GGCCCCGTCGG CGCGAT CCGGCGGGGCC         TTTTCTTTAACTGGT 100 43
         ndk 2518114 .. 2518143 - -20.1  -4.07568   GCCGGCGGCCCAAAA       CAAAACCCGCCCC TTTC GGGGCGGGTTTCG        CAGTGACACAAATCG 100 78
   Rru_A2166 NONE
   Rru_A2165 NONE
   Rru_A2164 NONE
   Rru_A2163 2511932 .. 2511950 -  -5.3  -3.42503   TGGCAAGACCCAGAA            GTCGA-CG ATTT CGATCGAC             CACTCTCGGCGCGCG  53 440
   Rru_A2161 NONE
   Rru_A2160 2507877 .. 2507925 -  -8.7  -4.17089   CCTAAAGGGCTAAAA GCCGCCCGATCGGCCGCGCCGGC CTTAC GCCTGCGCGGCCGG--GGGCAAG AGGGCGAGTTTGGGC  79 1
   Rru_A2158 2505393 .. 2505423 -  -8.2  -2.87132   GCCTCTCGCTAGAGA       TCACGAACGCTGCG GAC CACAGGGCTCGGGA       TTTGTTTTAATGCCG  55 32
   Rru_A2155 NONE
   Rru_A2154 NONE
   Rru_A2153 2501300 .. 2501342 - -15.5  -4.56597   TTTGGGCGCTAAAAA GCCAACGGCCAGGA-GGCGC CGTG GCGCCATCCTGGCCGAAGGG AAAAGAGCGGAGACT 100 70
        rplM NONE
        rpsI 2500004 .. 2500021 - -14.1  -4.65895   CCCCCCATGCAAAAA             GGCCCGC TTGC GCGGGCC              TTTTCGCTGCGATCT 100 57
   Rru_A2148 2493745 .. 2493763 -  -5.9  -2.52933   TCCGAATCGAGTAAG             GCCGGTC TCGTC GACCGGT             TCCCCGCCCCGCTCT  45 149
   Rru_A2147 2491042 .. 2491099 - -13.7  -2.71712   CCCGGCCCGCCAAAG GAGCGGTCTGAGAGCGGGAGGCGTAAA ATCGGG TTCACGCCCCCCGCTCT-AAAC-GTTC ACTCTCGGGGCGTTG  73 43
   Rru_A2144 2488486 .. 2488504 -  -5.2  -3.06261   CGCTAATGGTGAATA             TCCGTGGA ATG TCCACAGC             GGACCCTCCTTTGTT  46 145
   Rru_A2143 2487701 .. 2487729 - -18.3  -3.12351   CGCCCGCAGAGCGAA        CCGCGTTAAAGGA CCC CCCTTTAACGCGG        CGGCTCTAGCGGCGG  89 51
   Rru_A2141 2484308 .. 2484322 -  -5.6  -3.05816   CGAGCGCGGACGGAA               CACGCC CAA GCCGTG               GATCGTCGAGGATCT  47 476
   Rru_A2139 NONE
   Rru_A2138 NONE
   Rru_A2137 NONE
   Rru_A2136 2482030 .. 2482044 -  -4.2  -4.56597   GCCGCCTTTTAAAAA               GGCC GTCGACT GGCC               CCTGGACCCCGTCGG  70 320
        mdoG 2480267 .. 2480287 -  -2.4  -3.57263   AGCCCCATCGCGAAA            TCTCCCCG ACAGG CGGGCCGA            GGGGCGTGATCTTTT  49 69
   Rru_A2134 2479535 .. 2479581 - -16.7  -3.01712   GCCCGGCCGTTAATA GTCGGGGAGCGGTGTCGCGCCGA ACC CCGG-GCGACACCGCT-CCCAAT GTATCATCCACTATC  87 106
   Rru_A2133 2477433 .. 2477444 -  -7.2  -3.54459   GCAAGGGCCGGCAAA                CGGC CTAT GCCG                 TTCAGCCGGGCGCCA  58 27
   Rru_A2132 2476468 .. 2476502 -   -23  -3.94746   TGATAGTGAAGCAAA     TCGTCGTCGCGCTGTG GAC CAGAGCGCGACGACGA     CAGTCTAATCAAAAA 100 30
   Rru_A2131 2475075 .. 2475090 -  -3.2  -4.30719   TTTTTGCAGAACAAA              TCCCAC CATG GTTGGA               ATGATGTCGAGAACA  65 427
   Rru_A2126 2468714 .. 2468736 -  -6.1  -3.53012   GGCTTTTTCGGCAAA           GCCGGCCCG GTGAT CGGCGCGGC           CCCGTCCCGCTCTGG  55 107
   Rru_A2125 NONE
   Rru_A2124 2465785 .. 2465802 -  -2.6   -2.5547   ACCGGCGACATCAAG             CTCTCC TTCAGC GGAGGG              GCGAAGAAACGGCGG  38 52
   Rru_A2123 NONE
   Rru_A2122 2463892 .. 2463933 -  -6.5  -2.71731   GCGATCGGCGAATTA TTCGAGCCGGGACTGGCCGG TAT CCGCCTAATCCCC-CCCGAA GACCCCGCCGCCCTG  50 131
   Rru_A2119 2459452 .. 2459493 -  -2.7  -3.18681   CTCCAACCCCATCAA GCCCCCGCGTCCTGTTCACT CCA AGCCGGCCGGCCG-GGGGGC CGATCTCCGCCCCCC  43 129
   Rru_A2118 2458443 .. 2458458 - -11.8  -3.95214   ACGGATCGAAAAACA              CCCCCG GAAC CGGGGG               AAAAGACCTGAAAGC  82 188
   Rru_A2117 2457491 .. 2457513 -   -22  -3.76373   CCTTGAACAGCGAAA           CGGGCGGCGG AAC CCGCCGCCCG           GAAGAGAGATCAGAT 100 35
   Rru_A2116 2456131 .. 2456145 -  -3.4  -4.07687   ACTCCCCCTGGAAAA               GACAGG CTT CCCGAC               GGATCAGCCCACCGA  59 29
   Rru_A2115 2454438 .. 2454452 -   -10  -3.54424   GGCGACCTTGCCAAA               GATCCC AAA GGGATC               AAATCAAGATCCGAA  70 46
   Rru_A2114 2452884 .. 2452936 - -14.1  -3.59979   GGCGCCTATGCCAAA TCGGCGGCGGCGACGGC-GGCGGCC AATAA GGCCATCGGCCTTCTC-GCCGCCGA GGCCCGCAGGCAGGT  78 217
   Rru_A2112 2450642 .. 2450673 -  -8.6  -2.66559   AAGACATGGACAGGA      GGAGGGATACGGAC CACG GCCCGGATCCCCGC       CTTATAATACCGCAC  52 156
   Rru_A2111 2449580 .. 2449620 - -13.4  -4.42386   GCGGGAGCGAGAAAA GGGAAAGGCTTCCCACAGG AGGC CCTG-GGGAAGCCTTTTTC  GACCGAAGGTCGTGC 100 76
        clpS 2449019 .. 2449052 -  -7.3  -3.55622   CCTAACCGGCCCAAA     GGCACCGCCTTTTGA CCGA CCACAAGGCGCGGCC      TATTCCTTTTCCAGC  58 25
   Rru_A2109 2446396 .. 2446423 - -16.4  -4.36914   CCTTCGCGCACAAAA        GGCCCG-TTCTCC TTA GGAGAAACGGGCC        TCTCGCAAGTTCAAG 100 76
   Rru_A2108 2443477 .. 2443493 -  -5.7  -3.44622   GATCTTGATAATCAA              GCACCCC GTC GGCGCGC              TCTGCTCCAGAGCGC  55 53
   Rru_A2106 2440724 .. 2440740 -  -2.2  -4.07568   CCGCTTTTGCCAAAA             GGAACGG CGAC CCGC-CC              GGATCAAACGGCGGT  57 101
   Rru_A2105 NONE
   Rru_A2104 NONE
   Rru_A2103 2437771 .. 2437786 -  -2.4  -4.51196   TGGAAATTGATAAAA              CCACAG TCAA CCGGGG               ACTTAGCGCCGGCTC  66 44
   Rru_A2102 2437189 .. 2437200 -  -2.2  -3.61178   TGCATGGACGCCAAA                GACC CTTC GATC                 CCTTACCGTGACCCC  49 263
   Rru_A2101 2435699 .. 2435739 -  -3.8  -2.53271   TGATCTCGATAAGAC  CCCGACGCCGCCCCGG TTGCAAGCC CCGGACCGGCCCCAAG  CCTCAGCGCCCGGCG  40 28
   Rru_A2100 NONE
   Rru_A2099 NONE
   Rru_A2098 NONE
   Rru_A2097 NONE
   Rru_A2096 2425425 .. 2425447 -  -2.6  -2.80499   CAAGACGGTAAGAAT          GCGGCC-GC AGGAAG GCTGGCGGC           TTAATCGTCGCCGCG  39 26
   Rru_A2095 2424193 .. 2424227 -  -4.1  -3.54741   TATCAGTCTGTTAAA     GCGATGCGCGAGGAC TTAGG GTTAACGCCCATCGC     TCTAACCGGCCGAGC  49 27
   Rru_A2094 2420978 .. 2420996 -  -8.8  -5.00884   AGTTTTTCTAAAAAA             GCCGGC TTATTCC GCCGGC             TTGCCCGCGCCCTCG 100 13
   Rru_A2084 2411937 .. 2411975 - -14.8  -4.41348   TTTGGGGGAAACAAA  TC-GGGGCTTTCGGG-GA GGAAA TCACCCGAAAGCCCCTGA  TCAGCCAAGGCTCGG 100 209
   Rru_A2083 2411238 .. 2411271 -   -24  -3.57615   CCAAGACGGCCGAAA     GCGGCGAGCGGGAA ATCCGG TTCCCGCTCGCCGC      TCTCAGAGCTTGATC 100 91
   Rru_A2079 2407617 .. 2407670 -  -7.7  -3.95852   AGGCGATCAATGAAA TCGCCACGAC--CATCGG-CGAAATC AACGA GATTTCGGCCAATATCGCCGCGGCGA TGGAACAGCAAGGCG  68 312
   Rru_A2077 2405623 .. 2405681 - -11.7  -2.57132   TCCGCGCCCTATAAG GCCAAGGCCCGCGCCGCCGTCCCGACC GAGGCGA GATCGGCAGGGCGGCGCGGGGCT-GA- CGTCAGACGTTAAGC  64 91
   Rru_A2074 2400503 .. 2400527 - -13.5  -3.83844   CTCAGCAACTAATAA          GCCGCCCGCTC CCA AAGCGGCCGGC          CGCCTTTCGCGGCCT  91 144
        aspS 2397334 .. 2397360 - -19.5   -5.1356   CCTGACCAAGAAAAA         CCCCGCCCCTT TTTCC AAGGGGCGGGG         GTGAGAGCGGGGCGG 100 60
   Rru_A2069 2393311 .. 2393332 - -14.5  -3.23452   ATTTCTATAATTCAA           CACGGCATC GTAA GATGCCGTG            TTCTCTTCGGAATAA  82 209
   Rru_A2067 2390587 .. 2390624 - -12.6  -3.55071   GTAGAGCCCGCCAAA   GCCCTGGCGGAGCCGC CCGTTC GCTCCTCCGCCAGGGA    CCTGCCCCTTATTCC  79 34
   Rru_A2062 2385886 .. 2385921 - -23.4  -3.54424   GGGGACGGCGGGAAA    GC-CCCCGGTCCCGACC AGC GGTCGGGACCGGGAAGC    GCTAGCGGGGATCAC 100 37
   Rru_A2061 2385004 .. 2385036 - -19.2  -3.95584   TGTCGACCAACGAAA      TTGGGGCGGCCCCC TTCGC GGAAGCCGCCCCAA      TCCACAAAACGACCG 100 57
   Rru_A2060 2381705 .. 2381716 -  -7.2  -2.78384   GGCCGCTCGACGAGA                GGGC CTAT GCCC                 TGGATCATTTCTTCA  50 149
   Rru_A2054 2376716 .. 2376761 -  -3.7  -4.08945   ATCACCGTCCCAAAA CGCTCGAGGACATGGTCGACC ACAC GGTCGGCCGGGCCCTTGACCT GTTTGGCATCGACAA  61 209
   Rru_A2049 2369343 .. 2369359 -  -6.5  -3.53012   CGTTCTTGCCTTAAA              TACGGGC GAA ACCCGCA              AGAACCGCCCTAATG  58 107
   Rru_A2048 NONE
   Rru_A2047 2366971 .. 2367023 - -15.7  -4.36914   CCCCTTCCTAGAAAA CCCAAACCGTGCGCCCGGGAACACCT CCCC AGG-GTTCCCGGGCGC-CGAGC-GGG CGCGTCCTTACTGGA 100 33
   Rru_A2046 2365733 .. 2365749 -  -2.9  -3.05844   CTGGCGATTTTAAGA              CAGCTTC ACC GAATCCG              TACCGACCAGCCGGG  41 3
   Rru_A2045 2364793 .. 2364817 -  -7.7   -3.5026   AGAACGATATCACAA          GGCGCGCCCAA GCG TCCGGCCCGCC          GATGACGCGGTTTTC  62 58
   Rru_A2044 2364252 .. 2364275 - -11.7   -3.8646   CACGAACAAGCCAAA          GGC-CGCCCG TTCCT CGGGCGTGCC          CTCATCAAGACGTTC  82 70
   Rru_A2043 2362564 .. 2362587 -  -2.2   -4.3295   TCGAACAAAACCAAA          GCAGCCCGTC GGTG GCCTCGCTGC           GCAAGGTGCTCCAGG  65 460
   Rru_A2041 2360686 .. 2360711 - -16.1  -3.79251   GATGCCACGATCAAA         GGGCGGGCCCC TGGC GAAGCCCGCCC          TTTTTTATCGAAAGC  95 146
   Rru_A2040 2359342 .. 2359377 -  -3.3   -3.5489   ATAAGGCCAAAGGAA    GGGCGAGGA-GG CACAACACGAACC CCATCCCCGCCC    CCGTTCCGGATCTTA  49 38
   Rru_A2039 2358486 .. 2358509 -  -9.4  -3.66178   TGGCGCAAGGTCAAA          GTCGCCGGCC ACGT GGCCGCCGTC           CTTGAGGAGGCTCGG  68 46
   Rru_A2037 NONE
   Rru_A2036 2351157 .. 2351173 -  -7.9  -4.13767   TCCTCTATGTCAAAA              CCGCCCA TCT TGGGCTG              ATCAGCGGCCTTGAC  69 165
        anmK 2343118 .. 2343128 -  -2.4  -3.28791   AGGTGTCTTCGACAA                 CGGC CAG GGCG                 AATTGTCCGATGCGG  44 399
   Rru_A2029 NONE
   Rru_A2028 2341241 .. 2341265 -  -2.8  -2.98823   TGTGGTCGAGATAGA         CGCCG-GC-GTG GGT CACTGCACCGCG         ACGATGGGGGGCATC  41 13
   Rru_A2027 NONE
   Rru_A2026 NONE
   Rru_A2025 NONE
   Rru_A2024 2337736 .. 2337764 - -11.6  -3.74872   ACCCAGGGCATCAAA        GCCGCCGCCGAC GACCT GTCGGCCTCGGC        CCGCCAGTTGGAAAA  75 102
   Rru_A2021 2333711 .. 2333734 -    -6  -5.27335   GGGGTCAAAGAAAAA          GGGGTC-AGAC CCG GTTTAGACCCC          TTTTCATTCGGTCCA  90 29
   Rru_A2020 NONE
   Rru_A2019 2332297 .. 2332317 -    -6  -2.52543   AGGCTGGCCAACCGA            TCGCCGAC CCGAC GCCGGCGG            ATGCGGTGGTTGACG  45 408
   Rru_A2017 2331689 .. 2331716 - -14.1  -3.06087   AATACAGTGTGAAGA        GCCTCGCCCGG TTTACG CCGGGCGAGGT         TTACTATTTGGGCCA  76 107
   Rru_A2014 2328255 .. 2328270 -  -2.4  -3.59979   GCGGGCCACCCGAAA              GCGGCC CGCC GACCCC               GATGGTAAATCCTAC  49 37
   Rru_A2013 2327214 .. 2327234 -  -2.5  -3.35597   CGGATTGCGGAAATA            GCGACGA AAAGCGG CCATCGC            TTCAGTGTCCTTTGG  44 27
   Rru_A2012 NONE
   Rru_A2011 NONE
   Rru_A2010 2323356 .. 2323376 - -10.3  -3.64703   CGCGGGTGATCGAAA            CCACGGCGC TGG GCGCCGCCG            CCCTGGCCGGCCTGG  70 197
   Rru_A2007 2318610 .. 2318625 -  -3.2  -3.31144   TCGCCACGCCCAGAA              CGCG CCGCATAT CGCG               CAATGTCACCATCGG  47 81
   Rru_A2004 2315038 .. 2315053 -  -2.4  -4.41348   CGCGGCGGAAACAAA              GCACGG CCCG CAGCGC               CACCGCCTTATCTCT  63 73
   Rru_A2003 2312772 .. 2312800 - -12.4  -2.60615   AGCGCGGCGAAACAC       CCCCCGGTC-TGG TCGC CCGTGACCGGGGG        TATTAAAAAACGCTC  68 43
   Rru_A2001 2310404 .. 2310441 - -14.8  -3.28712   GGGCTGGCGGGATAA   GGGGCTCCGGCCGG-GA GACGA TCGCCGGCCGGGGCGCC   CGGAGGGTTAGAGCG  86 138
   Rru_A1999 2309066 .. 2309081 -  -4.7  -4.85599   TCCACGCTAGAAAAA              GGTCA GCGTTT TGACC               TCAACTCGCTTTCCA  78 12
   Rru_A1995 2304379 .. 2304391 -  -2.6  -3.63922   ATCGCTTCCAAAACA                CACC CCGGC GGCG                GACCCGTCCCTCTCA  49 38
   Rru_A1994 NONE
   Rru_A1993 NONE
   Rru_A1992 2302984 .. 2303002 -  -2.3  -2.75963   AGGGTGACGCCAAAG             CCGGGCA AAAGG TTCCCGA             AGGCGGCGAAAGCTC  39 39
   Rru_A1991 NONE
   Rru_A1990 2301585 .. 2301596 -  -2.2  -2.79212   AATCCAACAAAAACG                CAGCG AGA CGC-G                TTTTCTAATCATTTC  39 110
   Rru_A1989 NONE
   Rru_A1988 2297959 .. 2297974 -  -5.4  -3.90291   ATCCGTTTAAGCAAA              TCCCGA GCGC TCGGAA               TCAGAGCGCGACGAC  62 63
   Rru_A1987 2296747 .. 2296758 -  -5.8   -4.3739   CACCGCCCCACAAAA                GCGT CTTG ACGC                 CCCACGTCACGCAAG  71 32
   Rru_A1986 2295571 .. 2295599 -  -4.3  -4.07568   GCTCTCGCCGCAAAA        CGTGCTCAACGCC AAT GGCGGCGTGCTCA        GCCGTGACGACCGCG  62 257
   Rru_A1983 2294414 .. 2294442 -  -5.9  -4.56597   CCTCTCTTGGAAAAA       CCGTCGCGAGCG GACAGG CGC-CGCGCCGA        AGCCGGCTTGGGCGC  74 78
   Rru_A1982 2293854 .. 2293874 -  -2.3  -3.53091   ATCCCTTTCCTCAAA            CCGCTGGCC TCA GGCCGTTGG            CCGCCGTTGGGGTAT  47 40
   Rru_A1981 2292637 .. 2292651 - -12.8  -3.72576   CGCCGTTGGATGAAA               CGGCGC GCT GCGCCG               CCATCGTCCGCACCC  77 71
   Rru_A1979 2290116 .. 2290153 - -22.8  -5.52384   GTCTTATGAAAAAAA   GCCCCCCGGGAGCCGCC GATCA AG-GGCTCCCGGGGGGC   GAGGCTTTCACGCCG 100 57
   Rru_A1978 NONE
   Rru_A1977 2287365 .. 2287387 -  -9.1  -2.84325   CCCCCTCAAAGATCA           GCGGCGC CTTTCCCCC GCGCCGC           CCGCAAAAAGCTCAC  59 37
   Rru_A1976 2285970 .. 2285986 - -11.5  -3.29263   ATATCTGGGGCAGAA              GGAGGGC AAA GCCCCCC              TGTGGCTGAGCCACA  72 70
   Rru_A1975 2285469 .. 2285482 -  -3.7  -3.48036   GACCATCAGAAGGAA               GCCCC GTCA GGGTC                CACAACGTCCCGCCG  49 2
   Rru_A1974 2283865 .. 2283908 - -13.9   -3.0792   GAACAGCCGATCGAA GCCAT-CGGCCGCGCCGC CATGTCCCT GCTGCGCGACCGCATGGC CGATCCCACCCTGCC  72 344
   Rru_A1972 NONE
   Rru_A1971 NONE
   Rru_A1970 2277345 .. 2277373 -  -8.2  -2.56596   TGTGCGAGCAATGGA       CGATCCAGG-GCGG TGG CCACGCCTGG-TCG       GGCGGTCAGCCGGCG  52 139
   Rru_A1964 NONE
   Rru_A1963 2269711 .. 2269742 - -10.8  -3.86194   AACGGTCGCGACAAA      GGCTGATCTGTCCC ACAG GGAACAGAGCGGCC       CCTTCGCGCCTCTAT  78 368
   Rru_A1960 2268162 .. 2268189 -    -9  -3.52073   GGGCGAAGACGATAA        CTTGGCCGAAGC GGCG GCCTCGGCCCTG         CGCTTTGGCTATCGC  64 151
   Rru_A1951 2259819 .. 2259837 -  -7.3  -3.01712   TCGCCGGCTTGAACA             GCTGGCC GCCCA GGCCGGC             GCCGATGAAATCGCC  51 250
   Rru_A1948 NONE
   Rru_A1947 2255765 .. 2255779 -    -7  -4.82901   CTTGCGTCAGAAAAA               CGCGGC TCA GCGGCG               GGCGGGCGCTGCGAA  85 17
   Rru_A1946 2254518 .. 2254529 -  -3.6  -3.53012   CTTTTTCCGCCCAAA                GCGC TATG ACGC                 AAGTTCCACGGCCAT  49 17
   Rru_A1945 NONE
   Rru_A1944 NONE
   Rru_A1943 2251283 .. 2251295 -  -5.5  -3.63627   TCCTCACATGCGAAA                GACGC CGA ACGTC                GTTTCGGCAACGGGG  57 1
   Rru_A1942 NONE
   Rru_A1941 NONE
   Rru_A1940 2247419 .. 2247462 -  -7.2  -2.78384   GCTGGCGCGAGGAGA CCGCGAGCCTGCCGGCGCGTC GCC GCCCCGCCGCCAAAC-CGCCG CGCCCTCCCCGCCGT  50 40
   Rru_A1937 2244606 .. 2244622 -  -4.3  -3.53012   GGCTTTGTCTTGAAA              GGGAGGT CTA ACCCTCC              GTCTATATAAGATGG  52 172
   Rru_A1936 2242616 .. 2242649 -  -7.9  -2.70932   CCTTCCGTGGAATCA     CCGTCAGGGGGCCGG CGGG CCATCCCGCCGCCGG      TCCCTCCCCTATGTC  53 46
   Rru_A1935 2241142 .. 2241154 -  -2.6  -2.66695   GTCGCCAGCAAACAG                GAGC TTCTG GCCC                ATTGCCATGCCATCG  38 523
   Rru_A1933 2238816 .. 2238828 -  -2.6  -4.57569   TCATGGTCCTAAAAA                GCGA AGACA CCGC                GTTCAGCCCGCCTGG  66 28
   Rru_A1932 NONE
   Rru_A1931 NONE
   Rru_A1930 NONE
   Rru_A1929 2235503 .. 2235554 - -16.1  -2.50016   CCTGACGATCAAGAT CTGA-G-AGCGGCGGACCCACCTTCC ACG GGAAG-CGGGTCCGCCGGTTCGTCAG CAGCCGCCGGCGCGG  78 22
   Rru_A1927 2231561 .. 2231599 - -18.8  -3.28712   CCCGCCCCCTGATAA   TTCCGGCGGGGCCCCCCA TGC CGGAAGGCCCCGCCGACA   AGGCGTTTGTCAGTC  95 35
   Rru_A1925 2229150 .. 2229160 -  -6.8   -3.5764   AAGCCGATCGCCAAA                 GCCT GGA AGGC                 TGGCTGGCCGAGCAC  58 169
   Rru_A1922 NONE
   Rru_A1913 2217186 .. 2217202 -  -3.5  -3.17688   CAAGCACGCCATCAA              GGCCCTG GAG CGGGGGC              GGGGCGCGATCGTCA  45 394
   Rru_A1911 2216052 .. 2216064 - -10.5  -3.61398   GCGGCGGCCGAATAA                CGGGG AGG CCCCG                GCCCTCGGGCGGCAG  73 47
   Rru_A1908 2211576 .. 2211587 -  -7.2  -4.14392   CTTGAATGGGGAAAA                GCGC TCTG GCGC                 CTTTCTCTGTGCCGC  67 370
   Rru_A1905 NONE
   Rru_A1904 NONE
   Rru_A1903 NONE
   Rru_A1902 2204483 .. 2204508 - -16.9  -3.69256   ACGGACTCAAGACAA         TCGGCGGTCCC GTCA GGAACCGCCGA          TCCGTATCACTCGAA 100 111
   Rru_A1901 2202143 .. 2202199 - -10.3  -3.91897   CTGGCGACCTATAAA TCGGAAACGGCGATC---GGGGTCGACG AGCC CGCCGACCCCTAAGATCACGGTTTCCGC GTGAAAGACCGCTCA  78 64
   Rru_A1899 2200572 .. 2200598 -   -18  -5.75342   TCTTCGCAAAAAAAA         GATCCCCGCCGC TCG GCGCCGGGGATC         TTTTGGCGATCAGGC 100 35
   Rru_A1894 2194464 .. 2194478 -  -6.4  -2.80016   CGGGATGATCAAGCA               CGGAAA CGG TCTCCG               GACGGCGGCATCCAC  50 4
   Rru_A1893 NONE
   Rru_A1892 2192891 .. 2192929 - -13.1  -4.41348   CGCCGGCTAAACAAA  TCCTCTCCCCGCCCCCTG GCTT CAAGGGGCGGGGGG-GCA   GGCTTAGGCGGCCTT 100 29
   Rru_A1889 2188207 .. 2188226 -  -4.2  -3.38786   CAGAGGCAAGACGAA            GACGATCG CATC CAACCGCC             GGCGGGGTCCGGGCC  49 54
   Rru_A1888 2187482 .. 2187514 - -17.7  -3.02121   AAAAACAACATCAGA      CCCAGTCCGTCGACC CTT GGCCGACGGACCTGG      ACCCCTTTCATTCCG  89 89
        pyrG NONE
   Rru_A1886 NONE
         eno 2183545 .. 2183571 -   -18  -5.28176   TCGACGGATAAAAAA         GGCCGCCATCCC AAG GGAACGGCGGCC         CGTTTTTTGTCCAAT 100 66
   Rru_A1882 2180518 .. 2180544 -  -6.7  -3.84808   TGCAATGCACAATAA         CTGATTAACCA TAATT TGGTTAATCAC         CTGGACTGCTTAGGA  63 178
   Rru_A1881 NONE
   Rru_A1880 NONE
   Rru_A1879 2176503 .. 2176524 -  -2.1  -3.59979   CTCGGTCATGGCAAA           TACCCTTCC GATC GGGTGGGCA            AGAGAAACGGGCGAA  49 46
   Rru_A1878 NONE
   Rru_A1877 NONE
   Rru_A1876 2173641 .. 2173676 - -12.4  -3.29325   CCCCGACAACCAAGA    CCGTCGCCGCCGCGAC CAAG GCCGGGGCGCTGACGG     GAGGGGGCGCGATCA  71 38
   Rru_A1874 2171691 .. 2171709 -  -4.4  -2.78384   TGCCTGGGGAGGAGA             GCGCGGTC ATC GACCTAGC             TGGCCCGCCGGTCGG  43 21
   Rru_A1873 2170358 .. 2170393 -  -6.8  -2.71364   GGAGTCCTGGAAGGA    CGGCCGCATCGTCGC CTTGGGC GCGGCGAT-CGGCCC    GCGGGGGGATGAATC  48 409
   Rru_A1868 NONE
   Rru_A1867 2164560 .. 2164583 -  -8.1  -3.05384   GGGCGGCCGACCGAA          TGGATCGCC CGCAAT GGCGATCCG           CGCGCCATGGATCTG  53 328
   Rru_A1865 2161571 .. 2161607 -  -3.4   -3.5165   CCGAATAAAAGAAAG    GGGGGCGCTCTGTCAG GCGAG CAGACCGGTCGCCCGC    AGGGCCTCTTCGACC  49 1
        smpB NONE
   Rru_A1863 2160294 .. 2160317 -  -4.4  -4.52143   TGCAAAGACAAGAAA          GCGAGTCC-GC TGG GCTGGTCACGC          TAACGAAGTGACCAC  70 113
   Rru_A1858 2156750 .. 2156764 -  -3.4  -2.71712   CCGGGCGGCGCAAAG               CTGCCC GGG GGACCG               GCATATATAGAGACT  41 71
   Rru_A1857 2156175 .. 2156187 -  -3.3  -3.28791   AGGGCCCCGCGAGAA                CGAAC AGG GATCG                GGCGAAGGGGGGACG  47 119
   Rru_A1856 2153970 .. 2153989 -  -2.7  -3.01712   CGCGCCTGTTGAACA            GCATGGC CTTAGT GCCTCGC             GCGCTCGACGTAATT  41 14
   Rru_A1855 NONE
   Rru_A1854 NONE
   Rru_A1853 2151630 .. 2151657 - -13.5  -4.56887   GAAAAACCGACAAAA        GACGGGACAGGC CTTAC GCC-GTCCCGTC        AACAAAACAAACCAT 100 59
   Rru_A1852 2150879 .. 2150907 - -13.2  -4.10672   TCAATCTAAATCAAA        CCGCGTCCAATG GGGAT CATCGAACGCGG        CTTTCACACCCCTGT  95 50
         era 2149765 .. 2149785 -  -4.6  -3.16564   GCCCCAGGGGATTAA           GGC-CGCCG CTCA CCGCGCGCC            CCGCTCAGACATCGA  48 30
   Rru_A1850 2149615 .. 2149627 -  -3.3  -2.64616   TTTCCAGCTAGACCA                GCAGC ACC GCCAC                CCCGGCCATCAGGCA  40 5
        recO 2148828 .. 2148845 -  -5.5  -3.03214   AACGCACCATAGACA             TCACCGG TCCG CCGCTGA              CCACCGGCGCAACCG  49 8
   Rru_A1848 2146392 .. 2146405 -  -5.2  -3.16683   ATTCGATCCGACCAA               CGCC CTGGTC GGCG                GCGAAAACCTCATCC  49 180
   Rru_A1841 2140337 .. 2140374 -  -8.9  -2.61695   GCGACCGCTAAAGAG   GGCGGCCGCCCCGCCTG TGGT CAGACGGGTAGCACGCC    GACTTGGGTATAGCT  56 8
   Rru_A1839 NONE
   Rru_A1838 2135757 .. 2135774 -  -5.5  -3.14463   AACGGCCTGGATCAA             GGCCGTT TTTT AACGCCC              CTCATTTCACCAGAA  50 27
   Rru_A1835 NONE
   Rru_A1834 NONE
   Rru_A1833 2129754 .. 2129769 -  -7.5  -2.87564   CGAGTGGGCGAGAGA              GGCGC GCTCAA GCGCC               GTCCGCCCCCTTCCC  51 167
   Rru_A1832 2129012 .. 2129026 - -12.8  -4.33907   CAGAAAGATGGAAAA               CGGCGC AAG GCGCCG               CGTCGGTCAGGCGCG 100 32
   Rru_A1831 NONE
   Rru_A1830 2127917 .. 2127936 -  -9.2  -2.63073   TTTCGCCAAGAAGAT            CGGCCTGG GCCG CAAGGCCG             CCGAGTAGACCGCCG  56 223
   Rru_A1828 NONE
        glyA 2125216 .. 2125230 -  -3.5  -3.42503   CTTGAAGACTTATAA               CCCAC CATAT ATGGG               AAAGCGACGGCAAAG  49 5
        nrdR 2124673 .. 2124703 -  -4.6  -4.13995   TGCGCATAAAGGAAA       GATCGGCCGAAGAC GCC ATCTGCGATCGACC       GGGGTTAATCGGCCG  61 30
   Rru_A1825 NONE
   Rru_A1824 NONE
   Rru_A1823 NONE
   Rru_A1822 2121325 .. 2121350 - -10.3  -3.54424   CTCCATCTCGGCAAA         CCACGCCCGCC GGAC GGCGGGGGCAG          GCTTATAACCCCATC  70 28
   Rru_A1821 NONE
   Rru_A1820 NONE
   Rru_A1819 2119224 .. 2119237 -  -2.3  -5.41359   AATGAAAGGAAAAAA               CCCCA AATT TGGCG                CGCTTTCGCCGCCCT  85 48
        hppA 2116871 .. 2116900 - -22.2  -4.34402   TTGGGCATATGAAAA       CGGGGGCCCGGA TCACTC TCCGGGCCCCCG        CGTCGTTTTCCAGCG 100 51
   Rru_A1817 2113338 .. 2113372 - -10.6   -3.8512   GATGTACCAGAAGAA     CAAGCTCGTCCAGCCC GGC GGCCTGACCGTGCTTG     GCCATGCCCTCGACC  77 498
   Rru_A1814 2110071 .. 2110119 - -10.2  -3.53012   GCGCCCTGGCCGAAA CCGCCCT-GCGGCGGCCCCCTCA CGGA TAAGGGGGCCACGGATAAGGGGG ATCACCAAGGTCATC  70 36
   Rru_A1812 NONE
   Rru_A1811 2107111 .. 2107125 -  -4.9  -2.72344   GGTCATCGGCAATGA               CGCGC GGGGA GCACG               GTTTATTGCAAAAAA  43 62
   Rru_A1810 2106497 .. 2106530 -  -6.6  -3.28712   GCGCTTCGGCCAGAA     CCGGCGAGC-CGCGC CTTTC GCGCCCGCTCATCGG     CTTACCCGCGCTCCG  56 27
   Rru_A1809 NONE
   Rru_A1808 2105554 .. 2105596 -  -6.8  -3.92542   GCCATCCCCAAATAA GGACGGCCCGCGAGGCCCG GGGTAT CAGGCC-CGCCCGCCGCGC TTGGCCAGCACCTCG  65 7
   Rru_A1805 2100766 .. 2100783 - -11.3  -3.99678   ATCCCGACAATGAAA             CCACCGA GTTC TCGGTGG              TGGTGCGCTCCGATC  79 236
   Rru_A1803 2096952 .. 2096964 -  -4.1   -4.7923   AGCCAAAGAAATAAA                CTCTC TCT GAGAA                ACAAGAGTTAGACTT  74 239
   Rru_A1802 2095005 .. 2095016 -  -3.6  -3.14132   CGGGGGGCGGAGGAA                GGCC GCAA GACC                 CGCCCCTGCGCCATT  45 422
   Rru_A1799 2093256 .. 2093305 -   -12  -3.55453   AACGCAAAACACCAA CGCCGAGGCCCCCGACCGACGGC CGCCC GCCCCCGATCGGCGGCC-CACCG GACGGGATGGGATGG  74 47
   Rru_A1798 2091577 .. 2091606 - -16.5  -5.27335   CCTTGGAAACAAAAA       CACCGGAAGAGTC GATC GGCTCTTCCGGTG        TCTGATGATCATCAG 100 55
   Rru_A1797 2090763 .. 2090792 -  -5.5  -3.53224   GACCGGCCCCGGAAA       CGGCAACCGGCCC CGAA GGGCCGGCAATCA        TAGGGGTTGATCGGG  55 46
        valS 2088045 .. 2088055 -  -4.6  -3.72494   CGAACTCAAGAAACA                 GCAC CAC GCGC                 TCCGATCAGGCGATG  57 31
   Rru_A1795 2087105 .. 2087125 - -10.3  -3.53012   TTTTTCGCCGCCAAA            GCCAGAGGC GAA GCCGCCGGC            AAACAGGCTCAGAGA  70 34
   Rru_A1794 NONE
   Rru_A1793 2085284 .. 2085297 -  -9.5  -5.02074   GCATCGGGTAAAAAA               CGCGG ATCA CCGCG                GGGACGGCGAGGAAC 100 18
   Rru_A1792 NONE
   Rru_A1791 NONE
   Rru_A1790 2081234 .. 2081262 - -16.8  -3.84825   TCGACGGATAGCAAA       GC-AAGGCGGCCC CCGT GGGCCGCCTTCGC        CTATTCCATCCGACG 100 26
   Rru_A1787 2078563 .. 2078579 - -12.3  -5.06451   GATCACCCGAAAAAA              TCCCCGA CCG TCGGGGA              GGGCGACTCTACTCC 100 83
   Rru_A1786 2076619 .. 2076654 - -19.2  -3.85864   CGATGACCAGAATAA    CAAAACGCCCTCCGAA TCGC TTCGGAGGGCGTTTTT     TGTGGGACGTTTTTT 100 47
   Rru_A1783 2074238 .. 2074279 - -12.9  -3.63569   CCAAGCGGTGAATAA GCGGGTGG-TCCGCCCATCC CGG GAGGGGGCGGAGCCACCGGC GTTCCCGGTGCGGCT  82 262
   Rru_A1782 2073204 .. 2073226 -  -6.2  -3.72576   GCCTTCGCCACCAAA           GGATGACCGA TGA CCGATCAGCC           CCCCCCTGCCGCCCC  59 505
   Rru_A1780 NONE
   Rru_A1779 NONE
   Rru_A1778 NONE
   Rru_A1777 NONE
   Rru_A1776 2067312 .. 2067328 -  -5.7  -3.28712   CCCGCCCGCTCAGAA              CAGCGGG ATG CCGGCCG              TGGTGTAGACGGCGC  52 3
   Rru_A1775 NONE
   Rru_A1774 2065638 .. 2065669 -  -3.5  -3.90318   GGATCATCGCAGAAA      CCCCCCGGCCCCG CAACGC CAAGACCGGCGGC       AAGGGGTTGTTTTTC  56 113
   Rru_A1773 2065140 .. 2065178 - -13.9  -3.09831   GCCACTGCAAAACGA  CCGTCTCCTCCCACACGC GGGC GCG-GCGGGAAGAGACTG   GGAAGCGAAAGGCTT  76 40
   Rru_A1772 2064638 .. 2064660 - -11.9  -3.00946   TTCCTCGATAAACGA           CCGCCCCGG GGAAA CCGGGGCCG           GTTTTAGTCTTGCGG  68 29
   Rru_A1771 NONE
   Rru_A1770 NONE
        surE NONE
   Rru_A1768 NONE
   Rru_A1767 2059173 .. 2059185 -  -3.3  -4.25104   GGCGGTCGAGGAAAA                GGTCA GCC TGTCC                GATCGCTTCGGCCTG  63 262
   Rru_A1765 2057765 .. 2057775 -  -8.2  -3.72576   CCGCGCGCGACGAAA                 CGCC GGT GGCG                 CGGATCCTTCGATCT  67 164
   Rru_A1764 2056217 .. 2056233 -  -2.1  -2.52543   AGTCGGGCGAAGGGA              CGCGGCA TGA TGGGGCG              GACCCTTTAAAGGGG  37 32
   Rru_A1763 NONE
   Rru_A1762 2054464 .. 2054490 -  -3.5  -3.16039   AAGCATGCTGATCAA         CGCCATGGCGG TCAGC CCGACCCAGCG         CGGCGCCGGTATCGG  45 294
   Rru_A1759 2052241 .. 2052254 -  -3.9  -3.86307   TTTTTAAGAAAAAAC               TTCAA GTCT TTGAA                TCCCCAATCTTTTCC  56 112
   Rru_A1758 2051628 .. 2051647 -   -15  -5.60993   TTCCTCACAAAAAAA            CAGGCCCG GAAA CGGGCCTG             TTGAGAGGGATAGGG 100 290
   Rru_A1756 2049290 .. 2049321 - -11.4  -3.20858   TATGAGATCGAGGAA      CCGGGCCGCCCGCC GGCG GGCGGGCAATACGG       CGTCGCTGGCGACAC  66 230
   Rru_A1754 NONE
   Rru_A1753 2046765 .. 2046777 -  -7.7  -3.21276   CGGTGCGCGACAAGA                TGGAG ATG CTCCA                GCAGGTCGGGCTTGA  54 460
   Rru_A1751 NONE
   Rru_A1750 NONE
   Rru_A1749 NONE
   Rru_A1748 NONE
   Rru_A1747 2039616 .. 2039633 -  -5.5  -4.13995   TCGCGAGAAAGGAAA             CGGGC GTCTTCGG GCCCG              CAGAAGAACCGCTGT  65 45
   Rru_A1746 2038162 .. 2038203 - -18.8  -5.31275   TTTCACCAGAAAAAA GTCAAAAACCCGGCGAGG GGGATG CCCCGCCGGGTCTTTGGC  AACCAAACCAGAGAG 100 45
   Rru_A1745 2037303 .. 2037340 - -14.2  -2.83822   GGCATCGGATAATCA  GGCCGATCAGCCGGCTGC GAAC GCAGCCGGCCG--CGACC   TTTTCGCGCTGCGGC  75 179
   Rru_A1744 NONE
        coaD NONE
   Rru_A1742 2032952 .. 2032980 - -15.4  -3.81146   TCGTTCAATTAAGAA        GCCCCCGATATG GGTTT CATATCAGGGGC        TTAGAGTGGTGAGCC  95 294
   Rru_A1739 NONE
   Rru_A1738 2030454 .. 2030464 -  -6.8  -4.27117   GCCGGAGAAGACAAA                 TGGG CCG CCCA                 GCTTGACAACCGCGT  72 108
   Rru_A1735 2028729 .. 2028743 -  -3.5  -3.08438   CACCAGATCGGAAGA               CGAGA GCAAA TCCCG               GGCATTGCCAAGCGA  43 114
   Rru_A1734 NONE
   Rru_A1733 NONE
   Rru_A1732 2026671 .. 2026686 -  -3.2    -3.889   CCCAATTAGACCAAA              TCCCGA GCGA TCCGGA               TCAGATCGCGACGAT  56 77
   Rru_A1731 2025912 .. 2025924 -  -4.7  -4.08216   CCATCGGCGGCAAAA                GGGCC TAT GGCCG                CTGTCAGGGGGGAAC  62 416
   Rru_A1729 2024723 .. 2024748 -  -8.3  -3.01712   GCTGCTCGCCGAAGA         CCTGCTCGC CATCGCCC GCAAGCAGG          CCGAGGTGATCGTCG  55 138
   Rru_A1727 NONE
   Rru_A1726 2018743 .. 2018755 -  -5.5  -4.44548   CAGATCCAACCAAAA                GGACA ATG CGTCC                GCGCCTTTTGCTTTT  74 54
   Rru_A1725 2017740 .. 2017777 -  -2.6  -4.30576   CGGCCATTATGAAAA  GGCCGACGA-CTGG-CAA AGCT TCGTCCTGACCGACGGCC   TGCTGGTCACCGGGC  65 135
   Rru_A1723 2015363 .. 2015397 - -20.8  -5.18371   TTCTATAAAACAAAA     TCCGGCCTGGTCTTCC CGG GGGAGACCAGACCGGA     TTACTGGGACTTCAT 100 219
   Rru_A1717 NONE
   Rru_A1716 NONE
   Rru_A1715 2007663 .. 2007677 -  -5.7  -3.53091   ATTTCCTGGTCGAAA               GGATC GGCCA GATCC               CTGGACTGGAGACAA  55 54
   Rru_A1713 2005770 .. 2005783 -  -2.4  -2.80994   CTCAAGTTGAGCATA               CATC GCGATA GATG                CTGCTTATTTAGTAT  39 114
   Rru_A1712 2004085 .. 2004105 -  -4.6  -3.78953   ACCCCGAGCAGCAAA            TCGCCGCC GTCAT GACGGTGA            AGAACGAAGTCTTCC  58 157
   Rru_A1710 NONE
   Rru_A1709 NONE
   Rru_A1708 2002096 .. 2002111 -  -3.2  -3.61398   GGTTGGGCTGAAGAA              CTCGGA TTGC CCCAAG               CTTCGTCTGCTATAG  51 467
   Rru_A1707 1998903 .. 1998931 - -14.5  -3.10255   AGAAGATCTATGGAA        CCGGTCGCTTGGC TCC GCAAAGCGGCCGG        AGCGACTGGAACTCG  80 355
   Rru_A1706 NONE
   Rru_A1705 1995639 .. 1995662 -  -9.6  -4.95806   AAATGAGGACAAAAA          TGTCGGATTG GAGG CAATCCGTCA           GTCCTCGATGAGTCG 100 23
   Rru_A1704 NONE
   Rru_A1703 NONE
   Rru_A1702 1992476 .. 1992494 -    -8  -3.40403   CGTTCGGGATGATAA             CCCCGAAC CCT GACCGGGG             GATCCCCCGGGAATG  59 56
   Rru_A1701 1990855 .. 1990883 -  -4.4  -2.51458   TAGGAGAAAACAAGG       GTGGAAGGGGGCG CTCA CGCCGCC-CCCTC        GTCGTCCACCACGTG  42 11
   Rru_A1700 NONE
   Rru_A1699 1989168 .. 1989184 -  -9.5  -3.28712   GCTTCCGCCGTATAA              GCGAAAA GCG TTTTCGC              TCAAACGGATGGCTC  63 26
   Rru_A1697 NONE
   Rru_A1696 NONE
   Rru_A1695 1986399 .. 1986413 -  -4.2   -3.6269   TTATGGATAGAAAGA               TCCAGC CAG ACCGGA               GGAGGGTGCTTTTGA  54 206
   Rru_A1691 NONE
   Rru_A1690 1981325 .. 1981352 -  -2.6  -4.25283   AGGCGGCGATCAAAA        GTTTGCGCCGCCC AGC GGG-GACGCGAAT        CGGGGGAGGGGGCCG  60 41
   Rru_A1689 1980516 .. 1980528 -  -3.3  -3.60792   CCGCGAAGGGCCAAA                GGCCC TTC GAACC                CCGGGAAAGGTCGCG  51 161
   Rru_A1674 1963207 .. 1963231 - -18.5  -3.04792   GGATCACCGCGAACA          GCCGGCCCGGG TGA CGCGGGCCGGC          TGGAGGTTTGTTTTT  89 39
   Rru_A1672 NONE
   Rru_A1662 1954235 .. 1954249 -  -2.7  -4.56597   GCCGGCGGCCAAAAA               GGGGG TCAGT CCACC               GTCTTGGGAGCGAAG  66 16
   Rru_A1661 1953239 .. 1953255 -  -9.4  -2.62184   TGCGCCTGGAGATCA              TCGGCC CCGAC GGCCGA              CCCTTCGCCCGATCG  54 275
   Rru_A1657 1947250 .. 1947263 -  -2.4  -3.63968   GGCGAAATCGGCAAA               GAGA TCGGGG TCTC                CAAGAACGCCGTGGT  51 350
   Rru_A1655 1945975 .. 1945998 -  -2.5  -3.62522   GAAGTTCTTGAAGAA          CTTAAGG AAGATCCGAA CCTTAAG           CGTATTCCGGTGATC  51 222
   Rru_A1652 NONE
   Rru_A1651 NONE
   Rru_A1650 1940255 .. 1940277 -  -4.8  -3.59979   TTGGCCGACTTCAAA           GCGGCG CTATCGGCACC CGCCGC           GTCCGTTCCGGGGAT  52 400
   Rru_A1647 1934703 .. 1934719 -  -8.7  -2.69468   CAGTTGGATAGAGCA              CTCGCCT TCT AAGCGAG              ATGTCGCTGGTTCGA  57 455
   Rru_A1644 NONE
   Rru_A1643 NONE
   Rru_A1642 1930603 .. 1930631 - -12.4  -2.71269   AACCCCTAAAGGAAG        GGGGGGACCCGA AAGGA TCGAGTCCCCCG        GAACGGGCTCAGAGG  69 34
   Rru_A1641 NONE
   Rru_A1640 NONE
   Rru_A1639 NONE
   Rru_A1638 NONE
   Rru_A1637 NONE
   Rru_A1636 NONE
   Rru_A1635 NONE
   Rru_A1634 NONE
   Rru_A1633 NONE
   Rru_A1632 1922768 .. 1922812 -  -6.9  -3.56643   CCGACAGCCTGGAAA CCACCCGGCGCTATGGCACGG GAA CGGCGCCTTACCGGCAGGTTG GCGATTTGCGCAAGG  58 307
   Rru_A1629 1919924 .. 1919942 -  -2.2  -3.44051   CGCCGATGAGGACAA             GCCGGGCG CTT CGATCAGC             CGTCGCCCTCGATCT  47 21
   Rru_A1628 NONE
   Rru_A1627 1919227 .. 1919241 -  -7.2  -3.02043   AACGCCGCTCTAAGA               TCTTGA TAG TCAAGA               AAATCGTCATCGCAC  52 67
   Rru_A1623 1915941 .. 1915965 -  -4.9  -3.17075   TGGGCGGCAATTCAA         CGGGGC-GCG TCCGTC CGCCGCCCCT          TAAGTAAGGAAATGT  48 330
   Rru_A1621 1913141 .. 1913151 -  -8.2  -4.32034   TTACCATGACGAAAA                 CGCC AAT GGCG                 TCTTCGATCGCGGCC  79 202
   Rru_A1618 1911666 .. 1911680 -  -2.1  -4.24404   AGCCAAACGCCAAAA              GGC-CA CGCT TGCGCC               TTGTGCCGCCCGGGC  60 56
   Rru_A1616 NONE
   Rru_A1615 1907997 .. 1908013 -  -3.5  -4.84274   CAACGAGAGCAAAAA              GCGTCCG GAG CGGCGGC              CAGGGGAAAGATTTT  74 508
   Rru_A1613 NONE
   Rru_A1612 NONE
   Rru_A1611 1904669 .. 1904706 - -17.7  -3.30159   CGAACCCTCGGACAA   CGTGCGG-CGCTTCGCCT GCG AGGCGACGCGGCCGCGCG   GCGTGTGGTGCGCCC  89 363
   Rru_A1603 1889877 .. 1889887 -  -2.4  -3.57144   CCCTGGACCGGGAAA                 CCGG GTC CAGG                 CGACGGGGCGCGTTA  49 52
        gltX NONE
   Rru_A1600 1884614 .. 1884638 - -12.8  -4.91109   GCGGGACGATAAAAA          GGCGGTCTCC TTTGT GGAGGCCGCC          TTTTTTTGATCGGGA 100 57
   Rru_A1574 1855032 .. 1855042 -  -8.2  -2.62263   ACTTGGCCGAGATGA                 GGCG GAG CGCC                 ACGGTTTAGGGAGGT  52 109
   Rru_A1554 1833779 .. 1833808 - -17.8  -5.05601   CACCAGATAGAAAAA       CCCGGCGCGGCC TTGGAG GGCGGCGCCGGG        TTTTTTCATAAACCC 100 56
   Rru_A1546 1821293 .. 1821315 -    -7  -5.31275   CCGCATGACAAAAAA           GCGACCTTCT GGG AAAAGGTCGG           CGCAGTGTATAGGCT  95 44
   Rru_A1545 1820362 .. 1820389 -  -3.3  -3.55622   CCGAAGGCGTGGAAA        CCGCCGATCAG GCGCGG CTGCTGGGCGA         ATTGGCCGTCGATGC  49 228
   Rru_A1543 1817134 .. 1817153 -   -10  -3.39895   CCGTCGATGAAGTAA            CCACGCCCT CAA AGGGCG-GG            CAGGGCTTCGATAAC  68 14
   Rru_A1540 1813071 .. 1813104 -   -11  -2.61214   GAAAAATAGGAACAC     GACGAACCACCGGGA GAGAT CCCCGG-GGCTCGCC     TCAAAGTAGACGCCT  64 124
   Rru_A1539 1812756 .. 1812814 -  -7.8  -2.96274   GCGCCGATAAGGACA GTCCCGCTTCCCGATCCCTCCGGCCCCG CGC CCTGAAGGGGGGGGCCGGAAAGCGGGAA GCGGGGGTGATCAGG  55 44
   Rru_A1538 1812084 .. 1812094 -  -4.6  -3.14801   CTTCACAAAAAAGAT                 CGGG TTT CCCA                 GTGGGGCAGGGGGTC  48 167
   Rru_A1537 1811425 .. 1811456 - -12.3  -3.29324   TTGAGCCAAAGCCAA      CACCCCGCCGCCCG GCAAT CAGGCGGCG-GATG      ACCATGGCTGGACGC  76 138
   Rru_A1535 1808313 .. 1808330 -  -2.5  -3.73224   TCACCGCCGAGGAAA             CCCTGGC CGTT GCCCTGG              CCCGGCTCAGGCAGA  51 225
   Rru_A1532 1805192 .. 1805212 - -12.5  -3.06796   CCGCATTTGATCCAA            GGGCGGGGA TGA TCCCCGCCT            TTTGCTGGCGGAGCG  72 52
   Rru_A1528 1798680 .. 1798721 - -24.6  -3.53012   TGCGGCTTGGCCAAA GAAAAGGGGGGCGCCGAC GATCAG GTCGGCGCCCCCCTTTTT  TGACGTGATCACCTT 100 39
   Rru_A1526 NONE
   Rru_A1525 1794867 .. 1794882 -  -3.9  -3.81951   GCCGAGACGATGAAA              GAGCG CTGCGC CGCCC               AGGGGCTGGTCGGGG  57 475
   Rru_A1523 1793701 .. 1793715 -  -4.2  -3.57144   TTCGCCACCGCCAAA               TCCGCT TTC AGGGGA               CCAGGACGCGAAATC  54 18
   Rru_A1522 1792807 .. 1792834 -  -4.2  -4.14511   AAGCCTAGGCGAAAA        TCGATTTGCG AAATCTGG CGCAAACCAA         CGCACCTTGCAAGAG  65 156
   Rru_A1521 1792387 .. 1792415 - -10.9  -2.73124   GGGCACCGCCTAAAG        CCGCTTCGGTACG GTC CGTACCGCCGCGA        GAGGGCGCTTTCTAT  65 93
   Rru_A1516 NONE
   Rru_A1515 1789082 .. 1789096 -  -6.4  -3.34398   TTTGCTCGGCAAACA               GAAACC CTC GGTTCC               GTACGTGCGGTCAAT  56 204
   Rru_A1509 1782907 .. 1782961 - -10.3  -3.04248   CAAGATGGCCGAACA GGCGGTGGACCGGGCGGTGGCGCGC GGCGG GCTCGCCCCGGCGCGGCCTTGCGCC ACCGTGTCGCGCAAG  60 449
   Rru_A1507 NONE
   Rru_A1506 NONE
   Rru_A1505 1778936 .. 1778948 -  -3.3  -2.76815   ATGTGCTTCAATAAG                GGGGA TCA TCCTC                GTCCGCCTCGCCCGA  41 5
   Rru_A1504 1778023 .. 1778067 - -16.4  -3.76952   CCTAGGCAAGCCAAA GCGGGGAGCG-CGGGACCGGGG GCC CCCCGGTCTCGTCGC-CCCCAT ATAGGCATCGTCCCG  95 66
   Rru_A1503 1776685 .. 1776716 -   -18  -3.72576   GCTGCCCTCATGAAA      GCGGGGCTGGTGGA TGAT CCCACCAGCCCCGT       TTTGTCTTGCGCCGC 100 119
   Rru_A1499 NONE
   Rru_A1498 1769758 .. 1769771 -  -5.9  -4.57073   CATCGTTTTGAAAAA               CGGCA AGCT CGCCG                GCTAAGGCGCCCGTC  74 39
   Rru_A1493 NONE
   Rru_A1492 1761366 .. 1761420 -  -8.5  -3.53012   CGCGGGCGGCCGAAA GT-GCCGCC-GATCCG-GCGCGGCGG GTGGCG CTGTCGCGCTCGGCCCTGGCGGCGAC CGAGCGCGGGCTCGC  62 374
   Rru_A1487 NONE
   Rru_A1486 1754902 .. 1754914 -  -4.7  -2.66435   AGCCTCATGATACCA                GGGCG AAG CGGCC                GTCGGCGGCGGCGAT  43 2
   Rru_A1485 NONE
   Rru_A1484 NONE
   Rru_A1483 1749661 .. 1749676 -  -7.5  -3.36273   GCGCCGCAAGATGAA              GCCGG GGATGA CCGGC               TGGGCCCAGGTTCAT  59 210
   Rru_A1475 1740723 .. 1740734 -  -7.2  -3.33261   GGCCAATCCTTAGAA                GGGG AAAA CCCC                 GATCAGCGCCGCCGT  56 8
   Rru_A1474 NONE
   Rru_A1473 1738907 .. 1738919 -  -6.3  -3.56643   TCGACATGGTCGAAA                TCCTT CGA AAGGA                GGGGGACGGGGGTCC  57 109
   Rru_A1472 NONE
   Rru_A1471 1737567 .. 1737582 - -11.8  -2.60075   GGGCGCGTAAGCAAG              GCGCCC TTTG GGGCGC               GTTAAGCGGCAAGAA  64 27
   Rru_A1470 NONE
   Rru_A1469 1735978 .. 1736018 -  -6.6  -4.36993   AAGGGCAAAAAAATA  GCCTTGCGCTCCGTCGTC GCCAG GACGGCGGAGCGGGTGGG  AGGGAAAACGAAAGA  74 57
   Rru_A1468 NONE
   Rru_A1467 NONE
   Rru_A1465 NONE
   Rru_A1464 1730792 .. 1730818 -  -9.4   -3.2794   GGCGAGCCAGACGAA         GCTCATCGCG CCATCTC CGCGGTGAGC         AGTTCCACCAGGGGG  63 1
   Rru_A1463 1729574 .. 1729589 -  -4.6  -3.60412   GAAGCCGAGAGAGAA              CGGATG CCGT CGTCCG               GCTGTTTCTGATGGA  52 391
   Rru_A1461 1727217 .. 1727240 -  -2.2  -4.07687   AGCCCGGCCGCAAAA          CGAGGTCAGC CGTT GCTGGCGGCG           CTGAGCACGGCCTTG  57 7
   Rru_A1459 NONE
   Rru_A1458 NONE
   Rru_A1457 1720305 .. 1720318 -  -5.2  -3.90112   GGCTGGGCAAGGAAA               GGGC GTAACG GCCC                CGGAGCGGGCGACGG  59 87
   Rru_A1455 1718482 .. 1718503 -  -2.1  -2.71144   GATTTCCCCCAAGTA           GGCATCGAC CATG GTCGTCTCC            TTAGGCTATGAGGGG  39 45
   Rru_A1454 NONE
   Rru_A1453 1717345 .. 1717365 -  -2.3  -2.75844   GCGGGCAGGCGAAAG            GGCGCGGGC TGG GGCATCGCC            AAAGCCTAATCCGGC  39 31
   Rru_A1452 1716653 .. 1716666 -  -3.7    -3.646   TTCAATTAGAGACAA               TGCCC GTCG GGGCC                TTCGAGCGGCGCGCG  51 88
   Rru_A1450 1715039 .. 1715062 - -13.8  -5.08824   CTCGCATCGAAAAAA          GCGTCACCCG GGAC CGGGGGACGC           GGGGATCAGAGCACG 100 31
   Rru_A1449 NONE
   Rru_A1448 NONE
   Rru_A1447 1711516 .. 1711559 - -24.7  -4.28994   GATGATCGATGAAAA CACCGCCCCCGCGAAGCGCC GACAA GGCGCTTT-CGGGGGCGGTG CCGTGACCGCCTTCC 100 84
   Rru_A1443 1706334 .. 1706350 -  -6.5  -3.01712   TTTTGGCTCGGAACA              TGCGAGA TGG TCTCGCC              CGAACCGGGCGGCGC  49 74
   Rru_A1441 1705112 .. 1705132 -  -6.8  -3.65522   GATCTATGCCAATAA            CGTTGGCC CCAAC GGCGAACG            CGCCACCCAGAAGGC  61 303
   Rru_A1436 NONE
   Rru_A1435 1695948 .. 1695965 - -10.5  -2.52464   TTGGGTTTCAATCCA             CGCCCCC GTGA GGGAGCG              ACTCCCCGGAGTGTA  60 221
   Rru_A1434 NONE
   Rru_A1433 NONE
   Rru_A1432 1690319 .. 1690339 - -10.3  -3.53012   CTTGTTCGCCTGAAA            GCCGCCGCC GAT GGCGACCGC            GACGACGACGACGAT  70 40
   Rru_A1419 1676163 .. 1676177 -  -5.6  -3.08992   ACCCAGGCGAAGAGA               GCGCAC TTG GTGCGG               GTTAATCCCGTCGAC  49 97
   Rru_A1418 NONE
   Rru_A1417 1673688 .. 1673708 -   -14  -4.34402   GTCTTCACACGAAAA            CAGCCCGG AAGAA CCGGGCTG            TTTCGCTGCGGGCAA 100 55
   Rru_A1413 NONE
   Rru_A1412 NONE
   Rru_A1411 NONE
   Rru_A1410 NONE
   Rru_A1409 1664219 .. 1664233 -  -4.2  -3.33696   CGCCTTTTTAAGGAA               TCATCC AGG GGAAGA               CATAGGCTTGAAGGG  49 3
   Rru_A1408 1662200 .. 1662215 -  -3.2  -4.05788   CCGCGCGAAAGCAAA              TCCCGA GCGC TCTGGA               GGGGAGTACCACGAG  59 102
   Rru_A1396 1647659 .. 1647696 - -13.5  -4.24338   AAAAAGACGCCAAAA   GCCCCGG-CTTTTCGGGC GGA ACCGGAAAAGACCAGGGC   TGGAAAAACATACGG 100 154
        nifH NONE
   Rru_A1394 NONE
   Rru_A1393 NONE
   Rru_A1392 NONE
   Rru_A1391 NONE
   Rru_A1390 1641493 .. 1641505 -  -5.5  -3.31322   TCCAACCTTCCATAA                GGCCA AAT TGACC                GAAGGGGCGGAAGAC  51 442
   Rru_A1387 1638198 .. 1638215 -  -9.9  -4.09818   AAGACCAAGCAGAAA             TAAGCCG GGTT CGGCTTA              TCCCAGCGTGAACCG  80 23
   Rru_A1383 NONE
   Rru_A1382 1630883 .. 1630903 -  -2.4  -3.09492   GGGGGAACTCTAAGA            TGTCCGCC GATCA GGCGGCGA            GGGTCATCTCGGGCG  41 15
   Rru_A1381 1629291 .. 1629304 -  -6.7  -3.40403   CGCCCGCGATCACAA               CGTCA TTCA TGACG                GGTCTCTTTCGATGA  56 124
   Rru_A1380 1628059 .. 1628077 -    -3  -2.83191   GGGATAAGACACAAG             CGGCGG GTGGGGG CGGCCG             GACCCTGTGGCGAGG  39 73
   Rru_A1379 NONE
   Rru_A1378 1624985 .. 1625011 -   -13  -5.41143   GAGGGTTGAAAAAAA         CCGCCACCCC ACGAGAG GGGATGGCGG         GGAGGGAGGGCGGGA 100 50
   Rru_A1377 NONE
   Rru_A1376 NONE
   Rru_A1375 NONE
   Rru_A1374 NONE
   Rru_A1373 NONE
   Rru_A1372 NONE
   Rru_A1371 1614837 .. 1614860 -  -4.4  -3.29829   CAGATCCGGCCACAA          CAGGCTGGCG AAGG CGCAGGCCTA           GGCGAAGCGCCCGGC  49 23
   Rru_A1370 1614126 .. 1614162 -  -5.1  -3.99324   CTCCAGGACTATAAA   GGGGC-GCGCAACGGGG TGGGT CCCC-TTGCGCCGTTCC   CGGGCGGATCAGGCG  59 34
   Rru_A1369 NONE
   Rru_A1368 NONE
   Rru_A1367 1608696 .. 1608713 -    -4  -2.62983   TGCATCGCCAGAGGA             CGCCGG TTCTAC CCGGCT              TGGCCCCGTGCGGTC  40 40
   Rru_A1366 NONE
   Rru_A1365 1606470 .. 1606493 -  -5.3  -2.57132   GCCTGTTTGGACAAG         GC-GACC-CCG GGGG CGGAGGTCCGC          AAGCTTACTTGGCGA  46 30
   Rru_A1364 NONE
   Rru_A1363 1603744 .. 1603759 -  -6.8  -3.14944   CAGGAGGAGACTTAA              GTCCGCC TCG GGCGG-C              GGGGGGGAACGGCGT  54 47
   Rru_A1362 NONE
   Rru_A1361 NONE
   Rru_A1360 NONE
   Rru_A1359 NONE
        tpiA 1599742 .. 1599767 - -11.3  -2.70354   TGTCGCATAAATTTA         TCCCTAAATCG ATTG CGATTTAAGGA          ATTACGCAAGACCCG  65 27
   Rru_A1357 1598564 .. 1598591 - -19.8  -5.14563   CCGGGCATGAAAAAA        CCGCCCGGCAGC GGAA GCGGCCGGGCGG         TTGGGGGTGGTTAGA 100 54
   Rru_A1356 NONE
   Rru_A1355 1595484 .. 1595514 - -21.9  -4.13945   ATCGCCACGCGAAAA       CGCCCGGACCCCG CTTGC CGAGGTCCGGGCG       TTTCGTTGCCGGTTT 100 46
   Rru_A1347 1587481 .. 1587493 -  -4.9  -3.65827   GAATCCTGATCTAAA                TCTAA ATG TTAGA                GCGGGATCTTAGGCG  54 71
   Rru_A1346 1585299 .. 1585322 -  -5.2  -3.70149   TTCATATCATCGAAA          CCATGGGGGCG CGC CACGCCC-TGG          CCGCCAATGTCCATG  57 408
   Rru_A1343 1581800 .. 1581824 -  -6.4  -2.56596   CGGCGGACCAAGCCA          GCAGAGACGA GCGGT TCATCCCCGC          GTGTGCGGGGAACAG  49 447
   Rru_A1339 1575756 .. 1575789 -  -6.5  -3.34517   AGCCTTCGGCAAATA     CGAGCTGTGGCGCTC GGAG GCGGGCAACGGCTCG      ATCGCCATCCTGCCG  53 511
   Rru_A1334 1570328 .. 1570338 -  -4.6  -4.07568   GTCTTTTCTGGAAAA                 GCGG TGC CCAC                 TTTTCCCTGACGAAC  61 42
   Rru_A1315 1551967 .. 1551982 -  -3.2  -2.78384   CCGCGGGGGACCAGA              GGTCAT CGCC ATGTCC               CCTATTCCAAAGCCG  41 27
   Rru_A1314 NONE
   Rru_A1313 1549847 .. 1549884 - -13.4  -3.53012   GTTTGGCGGTGGAAA   GCGGCGCTTCCGCTGG AGGGGG CCAACGGAAGCGTCCC    TTTTTGATGGCTTAG  86 37
   Rru_A1312 1548085 .. 1548107 - -13.5  -3.34517   AGGCGCGCGGAAAGA           TCGCGATGG CCCCC CCATCGCGA           CAAACTCAGGAGGCC  81 31
   Rru_A1311 NONE
   Rru_A1310 NONE
   Rru_A1309 NONE
   Rru_A1308 1542117 .. 1542135 -  -3.2  -2.82623   GGGCCGCCAGAACGA             CATCAA CAGCACC TTGATG             AGTCTCAGCCACAGG  41 118
   Rru_A1307 NONE
   Rru_A1306 NONE
   Rru_A1305 1540355 .. 1540398 -  -5.8  -2.70932   CGTGCTGTGGAACGA CCCGGCCACCGGCGTCATGCG CCA CGC-CGACGCCGGCTACGACG ACGCCATCGCCTGCG  45 88
   Rru_A1302 NONE
   Rru_A1301 NONE
   Rru_A1300 1533375 .. 1533393 -  -6.6  -3.47349   GGTCGAAACCCAGAA             GGATCTGG CGA CCAGCCCC             TTGCCGGCGCCGATC  55 316
   Rru_A1293 1526185 .. 1526205 -  -5.3  -2.52464   GGGGGCTGGAACGGA            CCGGCGG CATCGAT CTGCCGG            TGGTTTTCGAAGCCG  44 216
   Rru_A1282 1509690 .. 1509725 - -13.2  -3.32727   CGAAGACGACATCAA    GCAGCCGGGGCGGGCGA GGA TCAGCCGCCCTGGC-GC    GCGGCCGATTTCTCG  81 10
   Rru_A1280 1508082 .. 1508115 -   -11  -2.62263   ACGCGGCCGATATCA    GGGCGGCGCGAATGGC CGTG GCC-TGCGCGC-GCCC     GCTTGTGTCCGCTGC  64 210
   Rru_A1279 1505439 .. 1505453 -  -5.6  -3.14132   CTGCGCCGTCAGGAA               GAGGCC AAC GGCTTC               GTCGAATATCCCAGC  49 175
   Rru_A1276 NONE
   Rru_A1275 NONE
   Rru_A1274 1498521 .. 1498533 -  -4.8   -2.5955   AGGCCTTACAAGGGA                GCCA GGGCT TGGC                TGACAAGTCAAGGGG  43 76
   Rru_A1273 1497547 .. 1497559 - -10.5  -2.72344   TTGGATGCTCAAGGA                GGCCG ACA CGGCC                CTGTACGCCGCCAAG  57 128
   Rru_A1271 NONE
   Rru_A1270 1490409 .. 1490431 -  -5.6  -4.18494   CACCGCCAGGCAAAA          GCCAGC-GT AGAAGA ACTGCTGGC           CATCGCCGATCGGGC  69 223
   Rru_A1264 1485179 .. 1485191 -  -6.2  -3.25919   AGCAGGGAACGAAGA                CGCC TCATC GGCG                GTGACCTTTCCTGAT  50 125
   Rru_A1263 NONE
   Rru_A1262 NONE
   Rru_A1261 1482144 .. 1482154 -  -6.8  -3.92832   AAATGGTGCAAAGAA                 TCGC CCG GCGA                 ACACGGGACCCGTCA  65 38
   Rru_A1260 1480889 .. 1480912 -  -9.5  -2.87211   ACCGGGTGTGAGAGA          GGGGGCAGG GCGCAG CCTGCCCCT           CCCGCCCGGTCATCG  59 76
   Rru_A1259 NONE
   Rru_A1258 1479874 .. 1479888 -    -7  -2.77999   GACTTAGTAAGATTA               GGCGTC GTT GTCGCC               GGGCAAGTGGGCGGT  50 8
   Rru_A1255 NONE
   Rru_A1254 NONE
   Rru_A1253 1473795 .. 1473820 - -10.4  -5.02074   GGAGCCGTCAAAAAA         GAAGGGGCCC TACAAT GGGCCCCTTG          ATGTCACAAATACCA 100 29
   Rru_A1252 1472289 .. 1472336 -  -8.2  -3.58864   CGATCACTACAAACA TCCCCCCGGCCGCCCCGACCGTC GCC GCCGGGTGGCGCG-CCAGGAAGA GTATCCGGTTTAACG  64 50
   Rru_A1249 1469857 .. 1469868 -  -3.6  -2.64616   CGGGGACGGACATGA                CGGG ATCT CCCA                 GGAAAGGAACGCGGC  40 143
   Rru_A1248 1469499 .. 1469541 - -21.4  -3.62518   GCAAAGACCTTGAAA GCCGACAGGCCCGGA-CGC TGGGTG GCGATCCGGGCCTGTCGGA GATCAAGTCTTTTGA 100 48
   Rru_A1247 1468879 .. 1468891 -  -2.6  -3.35679   CGCCGTCACGGACAA                GCCG ACCGG CGAC                AACCGGTTCGTGATG  44 111
   Rru_A1246 1467550 .. 1467563 -  -3.7  -3.20348   GTGATCAAGACGGAA               GGGGG CGTT CGCCC                ATCATGCCCCTCCGA  45 160
   Rru_A1245 1466859 .. 1466884 -  -2.5  -2.73443   CCATGACCAGACAAG         GGGCTCAGTGAC CTT GTCACACA-CCC         TCGGCCAAGTGGCGC  39 16
   Rru_A1244 1466431 .. 1466459 - -12.5  -3.14931   CCGACCGCCGATGAA        CCCGGCATGAA TGCGCTG TTCACGCCGGG        TTCATTGACCGGGGC  74 173
   Rru_A1243 1465506 .. 1465529 - -12.4  -5.15969   CGCCAATTCAAAAAA          GCCAAGTCCC GGAA GGGGCTTGGC           TTTTTTGCTGTCGAG 100 131
   Rru_A1242 1464825 .. 1464841 -  -9.3  -2.78816   CGATGGCGTATCAGA              CGCCGGC GAA GCCGGTG              ATGCGAACCCGAGTG  57 4
        rpmA 1464396 .. 1464418 - -17.8   -4.8048   CCGGGACAGCAAAAA           GGGGGAATGG ACC CCATTCCCCC           TTTCGCCGAATACCA 100 115
        obgE NONE
   Rru_A1239 NONE
   Rru_A1238 NONE
   Rru_A1237 NONE
   Rru_A1236 NONE
   Rru_A1235 1458915 .. 1458929 -  -8.5  -4.62069   GGCTCACCGGAAAAA               GCGGG GGGAT CCCGC               ACGCGGGCCAGCCCC  81 115
   Rru_A1234 1457245 .. 1457275 -   -19  -2.72344   GCCCAGGGTCAACCA       GACCGCAGCCCCGG CGC CCAGGGCTGTGGTC       TGGAAAAGACGCGAG  88 44
   Rru_A1233 NONE
   Rru_A1232 NONE
   Rru_A1231 NONE
   Rru_A1230 1452111 .. 1452123 -  -3.3  -3.74693   GCGCAGGGTAGCAAA                GCCGA GGG TCGGG                GTTTTTGATGATCCT  54 72
   Rru_A1229 1450511 .. 1450542 -  -2.9  -4.25104   CGGCGCTTACCAAAA     GGTCCA-CGCC-CAG CGGG CGGCGGCGATGGTCC      TCAAGGCCGCCGGGC  63 236
   Rru_A1221 NONE
        xerC 1439824 .. 1439852 -  -4.4  -3.23899   GGGCAATCAAGGCAA        GGCCGCCCAAGC GCTGG GCCTGGGCTATC        ACCAGTTCCGCCGCC  49 116
   Rru_A1218 1437937 .. 1437958 -  -2.9   -2.8372   CATTTCGGATCAAAT           CCTTCGC AGGCGGGG GCGCAGG            CGGGCGGCGCGGGCG  40 95
        pspB NONE
   Rru_A1216 1437126 .. 1437159 - -20.9  -5.64274   GCAGGCATAAAAAAA     CGGGCCGCGCTGGGG GGAT CCCTGGCGCGGCCCG      CTGTGTTTCTTGGCG 100 60
   Rru_A1209 1426033 .. 1426047 -  -9.2  -3.83026   TGGCCGGAGAGGAAA               CCCCGG CCC CCGAGG               TGGTCACGGTCCATG  71 401
   Rru_A1206 1423483 .. 1423505 - -19.2  -2.53263   GCCACGGCCAATCTA           GCGCGCTCTG GTT CAGAGCGCGC           CGGATTTGCTAGAGC  88 34
   Rru_A1199 1416685 .. 1416710 -  -3.2  -4.86731   CGGGGGCAAATAAAA         CCGGCCGGCTT TCTTC ATGCCAGC-GG         CGCGATCGGCACGGG  74 14
   Rru_A1198 NONE
   Rru_A1197 1413683 .. 1413718 -   -14  -4.07885   GACCGGGTCCCAAAA    CGCCCCCTTTCCG-CCG TTT CAATCGGGAAGGGGGCG    TTTTTTCGCGCTTAC  95 37
   Rru_A1194 NONE
   Rru_A1193 1410201 .. 1410239 -    -3  -2.75343   GGGAGAGTCTGAAAT   CGTCATCGGGAAGACCTC CTT GAAACCATCAGGACGACG   CGATTGCGCCCGAGT  39 69
   Rru_A1192 1409531 .. 1409569 - -21.1  -4.07568   TTTCCGCTCCGAAAA  CA-CACAGGCCCCCGGGG ATCG CTCCGGGGGCCTGTGGTG   TTTCGGAAGCAAATC 100 96
        dapF NONE
   Rru_A1182 NONE
   Rru_A1181 1397990 .. 1398032 -  -9.3   -3.1355   CCCACTGATATTGAA GCAAATCGTCGTCGCACTCTG GAA CAGAGTGCT-CGG-GATTTGC TCTAATCGAGGTCCA  61 27
   Rru_A1175 1391052 .. 1391079 - -20.6  -3.71527   CGCTAATCATGGAAA        CGGCCGGACCGC TTGC GCGATCCGGCCG         TTTTTCGTCACGGCG 100 220
   Rru_A1173 NONE
   Rru_A1172 1388349 .. 1388362 -  -3.7  -3.43751   CAACAAGGCGAAATA               CGGCC TCAA GGCCC                TTCTCTATCTTGCCG  49 438
   Rru_A1160 1375841 .. 1375857 -  -6.5  -3.47349   GGGCGAAACCGATAA              GGTCGAG GCC CTCGATC              GCGGCGCCAACGATT  55 477
   Rru_A1154 NONE
   Rru_A1153 1364530 .. 1364548 -  -3.1   -3.6422   TAGGGGGCGAAAAGA             CCCTTCT TAAGC AGAAGGT             TTTCACATTTTATAA  51 125
   Rru_A1152 1362740 .. 1362760 -  -8.2  -3.97659   AATAAGCGAACGAAA            TGGCCGGG TTTTT CCCCGCCA            CGGTCGCCGGCCCGA  69 47
   Rru_A1151 NONE
   Rru_A1150 NONE
   Rru_A1149 NONE
   Rru_A1148 1354954 .. 1354966 -  -4.8  -3.53224   GACCTTTGGCGGAAA                TCCG CTTGC CGGA                GCCGTCGCCAATGCG  52 453
   Rru_A1143 NONE
        glyA 1347635 .. 1347645 -  -8.2  -4.34402   TCTGTCATAGCAAAA                 CGGG CTC CCCG                 GGTGTGGTGGTCAGT  77 36
   Rru_A1141 1346689 .. 1346717 - -12.3  -3.64703   GCGCCCTCATCCAAA        GCGGGAGGCCCCC AAA GCGGGCCTCCCAG        TCCGTGATCGGAAGA  82 120
   Rru_A1133 NONE
   Rru_A1132 NONE
   Rru_A1131 1332644 .. 1332677 - -10.1  -5.60993   CGGGGCACAAAAAAA     CGGCGACCGAACCCT TTTG AGGGAGTGGCCGCCG      GGGCAAGTCATTGGC 100 157
   Rru_A1130 1331881 .. 1331891 -  -3.2   -3.9461   GTGTCGTAACAAGAA                 CCGT GCC ACGA                 CCCACATCCCACCCG  56 156
   Rru_A1129 1330464 .. 1330487 - -17.4  -5.75342   CGTCCTGAAAAAAAA          GGGGGCGCCC CGCG GAGCGCCCCC           GTTTCCATCGAATGT 100 51
   Rru_A1119 1316296 .. 1316320 - -18.7  -3.65046   GCCTGAGCTGAAGAA          TGTCCCGCCTT CCC AAGGCGGGACA          TTCCATTCACCCATT 100 377
   Rru_A1114 1308621 .. 1308631 -  -6.8  -3.53012   TCCTGCCGCTCGAAA                 CCGT GTG ACGG                 CGGGAAGATCACCCT  58 53
   Rru_A1111 1306455 .. 1306485 -  -4.5  -3.06815   ATCCTCCTCAATAGA      CCCCCGGGGCTGGC ATGG GCC-GAACCGGGGC       CATAATGGGTGCGGG  46 196
   Rru_A1110 1305439 .. 1305470 - -18.1  -4.07568   GGGCGCCGGCCAAAA      CGGTGAGCGGGAA ATCGCG TCCCCGCTCACCG       CTCTAAAATCGTGAT 100 92
   Rru_A1109 1303406 .. 1303449 - -10.3  -3.14693   TTCACTATCAATACA TTAGAGCGGTGTGCGCGGA CGAGAT TTCACGCATACCGCTCTCA TCGTGCGCCAAGGAT  65 45
   Rru_A1101 1292373 .. 1292418 - -14.6  -3.40867   CCAGCCAGTAAGCAA GGCGCCCTGGAGGGATGCGG GGTGTA CCGCCTCCCTCCAGGGGGTG CGCTTAAGGCAGGGT  86 29
   Rru_A1081 NONE
   Rru_A1080 1272538 .. 1272576 - -18.3   -3.9392   TTTCAGGCGAAACAA  TGGCCCGGAAAGGCGCCT TTTC AGG-GCTTTTCCGGGCCA   TTCATGGCAAAGCGG 100 119
   Rru_A1079 1270247 .. 1270266 -  -4.9  -2.73681   CATGGACGTCAAGGA            GGCGCTC TATGGC GAGCGCT             ATCCGATCGACGGCG  43 182
   Rru_A1077 1268570 .. 1268594 -  -7.7  -4.58395   GTCAGGCGCGAAAAA          GGGGCGCGAAA CGG TCACGCGCCGC          AAAGGGCGCAAAAAG  81 101
   Rru_A1076 1267633 .. 1267645 -  -3.3  -3.61178   GTGATGCACGGGAAA                CCTCC CAG GGAGT                TGCCGCCCGACGGGG  51 117
   Rru_A1075 1266020 .. 1266044 -  -6.3  -3.34715   CAGGGGCGTGAAAGA          CCCACACCCAC AGC GGGGATGTCGG          GATTCTTCCATCATT  52 102
   Rru_A1074 1264618 .. 1264661 -  -7.1  -2.57132   CGTCTGCGCGATAAT CCGGCCATCGGCGGGCGCC TTGCTC AGCGCTCGCCGCGCGGCGG CGGCATGGACGGGCC  49 5
   Rru_A1073 1263428 .. 1263441 -  -9.5  -3.58726   GGCCCTTATACAGAA               GCCCC GGGG GGGGC                GCAAGGCAAATACCG  68 82
        rpmE 1263108 .. 1263130 -   -17  -4.81249   CCTCAAACGCAAAAA           CGGCAACCCC ATG GGGGTCGCCG           TTTTTTGACGGGATC 100 64
   Rru_A1071 1260769 .. 1260798 -  -5.7  -3.53091   AGGGGGGCGGCCAAA       GGCTATCGCCTTGA GGA TCAAGGCGTTT-CC       TTGAAAGCGGCGGGT  55 13
   Rru_A1070 1259984 .. 1260014 - -23.4  -5.29846   AAGCCCAAATAAAAA       GGGATGCGGGTCCG TGA CGAACCCGCATCCC       CGACATCAAGGGATC 100 81
   Rru_A1059 1252153 .. 1252164 -    -3  -2.79289   CACCATGTGAATAAT                GTAA CCTA TTAC                 CGCTATTTCGAGTTG  40 374
   Rru_A1056 1249744 .. 1249764 -  -8.9  -3.14132   GGGCGGGTCGAGGAA            CGACCCCCG GCG CGAGAGCCG            GCTAGCAACTTAGGC  61 92
   Rru_A1055 1248923 .. 1248944 - -11.5  -5.14563   TCGCCCATCAAAAAA           GGGGGAGCC TCGC GGTTCCCCC            CTTTTTATCGGTCGG 100 53
   Rru_A1053 1245646 .. 1245698 -  -2.4  -3.65046   CTTCGAGCGCAACAA CGCCTTCCTCGCCC-GTCTGCCCGC CAGC GCGGCCTATCTGAGCAAGGGCGGCA GCTTCGGCGCCGATC  51 93
   Rru_A1049 1242153 .. 1242168 -  -5.4  -3.37796   CCGGATCACCGAGAA              CATGCC CTTT GACATG               ATTCAGATGCAGCGG  53 108
   Rru_A1047 1240690 .. 1240718 - -21.8  -4.64861   TTGGCCGAAAACAAA        GGCGACCGCCGA GTTTT TCGGCGGTCGCC        CCAACGACTCGGGCT 100 77
   Rru_A1046 1238020 .. 1238031 -  -7.2   -2.8194   TAAGGACGGATCAGA                CGCG CTTG CGCG                 CCAAGCCGATGCTTT  50 9
        rpsU 1235859 .. 1235896 -   -25  -3.72576   TCCGTTTCCACCAAA   CGCCAAGGCCCGCCTCC TATCC GG-GGCGGGCCTTGGCG   TTTGGCGCTGACCGA 100 229
   Rru_A1040 1233038 .. 1233067 -  -8.5  -4.16943   CGGGAGAGGGGAAAA       CGGCGGCGCGCTCA GCC CAAG-GCGCGGCCG       GCCTGACGCCGGGGC  75 7
   Rru_A1039 1231932 .. 1231970 -    -9   -5.0538   CTGCACTGCAAAAAA   CGACTGGTCGGTAT GGACAGCGATT ATACCGACCAGTTG   ATTAGTCGACCGGGC 100 64
   Rru_A1038 1230717 .. 1230772 -  -2.5  -3.05046   CGACCCGGCGAAAAC CTCGCGTCGTCCGACGATG-GTGGC ATTGGTCA GCAACACGTCGTCGGACATCG-GCG CCCTTTCGGCGGCGG  41 66
   Rru_A1037 NONE
   Rru_A1036 1228918 .. 1228930 -  -6.3   -4.3898   AGTATCCGTACAAAA                TGATC GTT GATCA                GCCCGATTTGTCTAA  71 37
   Rru_A1035 1225970 .. 1226011 -  -8.7  -3.44229   ACTCGACGATTAGAA CAAATCCCCG-AGCGCTCGG AAC CAGAGCGCGACGACGATTTG CTTCACTGTCAGTAT  66 81
   Rru_A1033 1222916 .. 1222936 - -10.3  -5.25803   AAGGGTTATAAAAAA            GCGGGCTAC TCT GCCGCCCGC            AGGTTGATCGCGGAA 100 10
   Rru_A1032 NONE
   Rru_A1031 NONE
   Rru_A1030 1218958 .. 1218994 - -13.6  -3.85698   GGCCTCGCCGATAAA    GGCCAACGGCCCCGCG CCTGT CGCGGGGCCGTCGAAA    CGGTCGGGGATATCT  91 75
   Rru_A1029 1217630 .. 1217651 -  -5.1  -3.78775   CGCTTGATGACCAAA           TC-CGCCCTG CCG CAGGCCGAGA           CCACGACCGCCGCTC  60 258
   Rru_A1026 1214522 .. 1214538 -  -5.8  -3.05384   CGCGGGGGCAGTCAA              TGCCAC TCGTG GCGGCA              CGCGTTGATGGGGGT  49 205
   Rru_A1023 1212339 .. 1212386 -  -9.1  -3.65812   CGTTTCCCAACATAA GGGGTGCGGGCGGCGGGCGGTAGG GTC CATTCCACCC-CCACC-GC-CCCC GGAGGAATCGGGCGG  68 48
   Rru_A1022 1211434 .. 1211459 - -14.7  -5.06414   TCGCCTTAAGAAAAA         GGGTGGGGAGC AAAC GCTTCCCACCC          TTTTTTTGACTGATC 100 51
   Rru_A1020 1209322 .. 1209357 - -25.6  -3.72678   GAAAGACGATCCAAA    CGAAAACCGCCGCCCGG GGT CCGGGCGGCGGTTT-CG    CGGCACAGGGGCGGG 100 62
   Rru_A1018 1206576 .. 1206608 - -17.1  -3.09452   ACGCGGGAAGACAGA     CCCGGTACCCGTCG ACAGAG CG-CGGGTACCGGG      CGAAAGCGGATGTGT  87 60
   Rru_A1017 NONE
   Rru_A1016 NONE
   Rru_A1015 1203420 .. 1203446 - -15.1  -3.72576   GCCGCCCCGACCAAA         CCGCCTGCGCC GCTTT GGCCCAGGCGG         TGATCGATGATCTGG  83 132
   Rru_A1009 1195723 .. 1195739 -    -5  -3.05384   CGGTCGTGTACGGAA              GGGCCG GTCAT CGGCCG              CTCCTGCTTATGGGG  46 51
   Rru_A1008 NONE
   Rru_A1007 1194071 .. 1194086 -  -3.3  -3.72236   GTGATAAAAAAGACA              TTGGT GATAAA ACCAA               AAAAATCGCCACCTG  53 330
   Rru_A1004 1190584 .. 1190618 - -15.7  -3.06831   TCAATGCCCATGGAA    GCCGGGCGACGGGAGA GAGG CCCCCCGCCGCCC-GC     GGACAGGTTAGCGGA  83 33
   Rru_A1003 NONE
   Rru_A1002 NONE
   Rru_A1001 1187369 .. 1187411 - -21.5  -3.30338   ATAATGGCGCGATAA CCCCTTGCGCGCCATTATGG TCGC CCA-AATGGCGCGCAAGGGC GGGGCGCCCGGTTAA 100 37
   Rru_A0990 NONE
   Rru_A0989 NONE
   Rru_A0988 1175137 .. 1175149 -  -4.7  -4.67234   AGCTAACGGCAAAAA                GTGGC CTT GCCGC                CTTACATCTTGTCGA  73 27
   Rru_A0977 1162983 .. 1162999 -  -4.3  -2.84051   CGATCGTCACCAAAT              CGCCACG CTT CATGCCG              TTCCCTCGTCCCGGA  45 18
   Rru_A0976 1162625 .. 1162635 -  -6.8  -4.41797   AAAAGTAGAGGAAAA                 GGGT CTG ACCC                 CTTTTTGGACCCCTT  74 56
   Rru_A0972 1157155 .. 1157167 -  -4.7  -4.07568   CGCCCTGGTCGAAAA                CCCCG ATC CCGGG                CGCGGCTTGGGCTCC  62 301
   Rru_A0964 NONE
   Rru_A0963 NONE
   Rru_A0962 1147468 .. 1147496 -  -2.1   -3.2056   AGTTAGAGTGACGAA        GTCGCCGAGGGGC GGT GCCCCCTTCCGCC        AGCCGCTGCAGACGG  43 125
   Rru_A0961 1146583 .. 1146629 -  -4.9  -2.77233   CGATAACCGGGAAAT CCGGG-GGGGCG-GGACGGCTGG CCA CGGGCCTTCAGCGCCCGGCCCGG GCCTTGGTCAGGGTC  43 10
   Rru_A0960 1145439 .. 1145449 -  -4.6  -4.40963   AGGGGTGAAAAAGAA                 CCGC CAG ACGG                 CCTGTAAGCCGGGTT  68 458
   Rru_A0959 NONE
        mraW NONE
   Rru_A0957 NONE
   Rru_A0956 NONE
        murE NONE
   Rru_A0954 NONE
        mraY NONE
        murD NONE
   Rru_A0951 NONE
        murG 1133599 .. 1133609 -  -2.4  -2.74144   CTCTCATGCGGAAAT                 CTCC TTG GGGG                 GCATCTCGGGCACCC  39 3
        murC NONE
        murB NONE
         ddl NONE
   Rru_A0946 NONE
   Rru_A0945 1127922 .. 1127959 -  -3.9   -2.8552   CCCTAGTCACGAAAT   CGATACCGTCTCACCGC TCCC GAGGATCGACGGCACCG    CTCTTACGGCGCCCT  42 52
   Rru_A0944 1125801 .. 1125839 - -10.8  -3.01924   GATCCGGTCCGAAGA   CCGGTGATCCGGGCCGCC TTA AGCGGTCGGGATCCCCCG   ACGATTAGTTGGCTT  64 30
        lpxC 1124273 .. 1124289 - -10.8  -2.87931   CGGAGCGGCGAGAGA              CCGGGC GGGCG GCCCGG              CGGGCTCAGGCGGTG  62 31
   Rru_A0941 NONE
   Rru_A0940 NONE
   Rru_A0939 1118522 .. 1118536 -  -7.1  -2.74012   CGACGATGCCAACCA               GGGAG GGCGA CTCCC               GGGCCCTCGGCTTCA  50 154
   Rru_A0938 1117433 .. 1117447 -  -7.1  -4.07568   TGGTTTCCGCGAAAA               GCAGG CCCGC CCTGC               TTGTTCTTGATGTCC  68 74
   Rru_A0937 1116033 .. 1116052 -  -4.2  -4.41844   AAAACCCCGATAAAA            GACGGGCGA TCG CCGCC-GCC            GGCCAGGAAAGAACG  68 77
   Rru_A0931 1107235 .. 1107250 -  -6.1  -4.17762   GATCGCTTAAAAGAA              CCCCA TGGCTT TGGGG               TCGTAGCTGACCAGC  68 1
   Rru_A0930 1105968 .. 1105994 -  -9.3  -5.75945   ACGGGCTAAAAAAAA         TCCCCGGGGCA GGAGG CACCCCGGGGC         AGGTTGAGGGGATCG 100 52
   Rru_A0928 1104476 .. 1104515 - -13.5  -3.75024   CGCGACGAGGAACAA  GACCGGCGCCCGATCCCG ATCAG CGGGA-CGGGCGGGGGCC  CTTCCATATGGGGCG  91 63
   Rru_A0927 1103439 .. 1103455 -  -2.2  -3.81951   CTTGAGATGATGAAA              GCCG TTTAGCCGC CGGC              GCCGTGGGCGGACGG  52 14
   Rru_A0923 1096959 .. 1096998 - -20.6  -5.80817   GTGAAGACAAAAAAA  GAGCGGCGCGGGGCGGCC GGGG GGCCGTCACGCGCCGCTT   GGGAGGCTGAGGCGT 100 46
   Rru_A0922 1096282 .. 1096295 -  -5.3  -2.75712   GCAGGGATTCAATGA               TCTTG CTCA CAAGA                TACCTCCAATAACAC  46 5
   Rru_A0921 1095941 .. 1095967 -   -23  -4.25104   CTCCCCTCACGAAAA         GGGCGACCCGCC GAT GGCGGGCCGCCC         TTTTTCATGGCACCG 100 47
   Rru_A0901 1075892 .. 1075908 -  -2.2  -4.26327   GATCGACGAAAACAA              CGCG CCTCATGTC CGCG              GGCCCCCGATGGCAT  60 15
   Rru_A0900 1075132 .. 1075155 -    -3  -3.61103   GAAGCCGAGGGGAAA          GGCGCTCATGC CGC GC-TGTCCGCC          ATCGCCGCGACGGCC  49 7
   Rru_A0899 NONE
   Rru_A0898 1072959 .. 1072983 -  -9.1  -2.62184   GGGTTCCCGACACCA          GCCGCCCCGGC TTC GCCGAGGAGGT          TCGCCGCCAGTGCCA  54 162
   Rru_A0895 1071137 .. 1071147 -  -2.4   -5.1361   ACAAACGCTAAAAAA                 GCCG GGA CTGC                 CATCAAAGATCCTGC  78 76
   Rru_A0894 1070289 .. 1070301 - -10.5  -2.77043   TCGACGATCGGAAAT                CCGGC CTT GCCGG                CCTTAGCCGATGTTG  61 28
   Rru_A0893 NONE
   Rru_A0892 NONE
   Rru_A0891 1067757 .. 1067812 - -22.6   -3.6106   CGCAATACGCCCAAA CGG-GCGGCTCGCCGGTCGGCACGCC ACGGGG GGCG-GCCGGCCGGCGAGCCGGTCCA GGTCAATCGTTAAAG 100 43
   Rru_A0890 1066623 .. 1066640 - -12.7  -4.72272   GGCTGCCATGAAAAA             GGCCACC CGAA GGTGGCC              TTTTCCGTGCGATCA 100 59
   Rru_A0888 1065307 .. 1065323 -  -7.9  -5.44119   TTGAGGTCAAAAAAA              GCCGCCA AAA CGGCGAC              AACGACGGTGGTCCC 100 123
   Rru_A0887 NONE
   Rru_A0886 1060761 .. 1060808 - -16.1  -4.14392   TTCTAAGCGCGAAAA GCCCAAGCCCGGCGCCGAGGC CTTGCC GCCTCGGAGCCGGGGGAGGAC GCTTAAACGTGATGG 100 28
   Rru_A0877 1046431 .. 1046442 -  -3.6  -3.54488   GGCGTTGAAATAAGA                GGGC ATAC ACCC                 TTTTTGGTGTATTAA  49 409
   Rru_A0876 1045916 .. 1045952 - -11.6  -3.53012   CCCTTTTTTCTGAAA   GCGGATCCCGGACGGCGA CGG TCGCCCCCCGGGA-C-GC   TTTTTATTGGCAGGT  74 29
   Rru_A0875 NONE
   Rru_A0874 NONE
   Rru_A0873 NONE
   Rru_A0872 NONE
   Rru_A0871 NONE
   Rru_A0870 1041544 .. 1041562 -  -5.9  -4.28254   TTTTAATACGGAAAA             GCCCGCT TTACG AGAGGGC             TTGCGTCAGCTTCCG  68 31
   Rru_A0869 NONE
   Rru_A0868 NONE
   Rru_A0867 1035717 .. 1035749 -  -3.9  -2.95652   GCTATTGAAGCAAAT      CGCCGTCGCGGTCTG GTC CGGAACGCCAGGGCA      TTCCCTTTAGGGTTG  42 32
   Rru_A0864 NONE
   Rru_A0863 1027914 .. 1027927 -  -5.9  -3.40403   TTGCGTGCATCACAA               GGCGA ACGA CCGCC                GTGTCCGCGATGCCG  55 514
   Rru_A0861 NONE
   Rru_A0860 NONE
   Rru_A0859 NONE
   Rru_A0858 1022285 .. 1022298 -  -3.1   -4.1673   CAAGTCTCGAAGAAA               TCACCG GGT CGG-GA               AAGAACGAAGTAAAC  62 127
   Rru_A0857 1020775 .. 1020790 -  -2.4  -3.57792   CGATGGATCCCCAAA              GGCGCC AGGG AGCGCG               GGCTTTTGAGACGGT  48 287
   Rru_A0855 1017918 .. 1017939 -  -7.9  -3.03124   TCTGACGGCCGAACA           GGCGCGC-CG CAT CGAGCGCGAC           CATGGCGAGGTGATG  53 90
   Rru_A0852 1015380 .. 1015419 -  -6.4  -3.14564   CCAGGGCCCGAGGAA GACACCGG-GTCTCGCCG GGCAAG CGGCGAGCCGCCCG-GTC  GATGGCCAATCCGAT  54 217
   Rru_A0851 NONE
   Rru_A0850 1013515 .. 1013530 -  -7.6  -3.89041   AGATATCAAAGATAA              GTCATC ATTT GATGAC               ATTTTGGACTTGAGA  69 368
   Rru_A0838  996277 ..  996297 -    -4  -3.48276   GCTTGGTGCACACAA           GCGGCCTTGC GGG GCA-GGCC-C           AAGGATTATAGAGCA  49 99
   Rru_A0837 NONE
   Rru_A0836  992036 ..  992047 -  -2.2  -3.30124   GTTCATGCGCGACAA                CTGG CTCT CCAA                 CCGCGCCTTCACATC  44 359
   Rru_A0835  989281 ..  989304 -  -9.6  -5.00467   TCAATAACAACAAAA          CGGGCGATGGT TTA ACC-TCGCCCA          AAACACCCCCCTCCC 100 76
   Rru_A0822 NONE
   Rru_A0821 NONE
   Rru_A0820  976645 ..  976657 -  -3.3  -4.26076   GGACTGGTACGAAAA                GATGG TGG CCAGC                CGTGACGCGATGGCG  63 284
   Rru_A0818  973654 ..  973669 -  -3.2  -3.61715   CATGGTTCGCAACAA              GGCGAT CCAC ATCGCG               CTGGGCGTGCGCGCC  49 294
   Rru_A0816  970830 ..  970844 -  -2.1  -3.50853   CTCTCGCAACGACAA               TGCAC TCAAT ATGCA               CTCCAGGGCGGCCAA  47 112
   Rru_A0815  970436 ..  970453 -  -8.3   -2.8294   GAGTCCGGACAATCA             TCCGGCG GCGC CGCCGGT              CAGCGATTCCAGGTA  53 5
   Rru_A0814  969849 ..  969863 -  -4.2  -4.07568   TGGCTCGCGCGAAAA               GGGC GGACGAA GCCC               CTCTGGTCTGTTGGT  61 74
   Rru_A0811  967196 ..  967209 -  -4.5  -3.05268   GAACGACCGTTAAGA               GGC-GC TCA GCTGCC               ATTGGGCTCAGGCAT  46 33
   Rru_A0808 NONE
   Rru_A0807  961640 ..  961654 -  -9.2  -2.78384   GTGCCCGCCATCACA               CCAGCG CTC CGCCGG               AAAACGAGAAGAACG  57 6
   Rru_A0806 NONE
   Rru_A0805  960357 ..  960373 -  -3.6  -3.14468   TGCCAGGAGACGGAA              GCCATG TAGGT CCTGGC              TGTCGCGTGCAATTC  45 238
   Rru_A0804  959195 ..  959216 -  -2.3  -3.75153   TTTGTGGAATCCAAA           GCTTTCA-GA TCG TCGTGGAAGC           GCCAGCGGGAAAGTC  52 135
   Rru_A0798 NONE
   Rru_A0797  951573 ..  951587 -    -7  -5.25735   GGAAAAAAGGAAAAA               TCCCCG GGG CGGGGG               GCGCGCCGGCTGGGC  93 142
   Rru_A0796 NONE
   Rru_A0795 NONE
   Rru_A0794 NONE
   Rru_A0793  946396 ..  946422 -  -8.7  -4.19704   TAAGGGTATTGAAAA        TGGCGGCCTTCC GCCC GGATG-CCGCCA         TTCCCCACAAAATAT  79 48
   Rru_A0792  945073 ..  945100 - -19.9  -4.67038   CGGCCAAAAGGAAAA        GGGCCCGGACG GGGTGG CGTCCGGGCCC         TTTGATTTACCGGGA 100 284
   Rru_A0787 NONE
   Rru_A0786  938376 ..  938404 - -18.9   -4.4078   TTGCCCTAACGAAAA        GCCCCCCGGGA GGATCGG TCCCGGGGGGC        TTTTGTCTTGGTCGG 100 47
   Rru_A0774 NONE
   Rru_A0773 NONE
   Rru_A0772 NONE
   Rru_A0770  908544 ..  908577 - -16.8  -3.65351   TGATCGTCAGGCAAA    TCCCCG-GCGCGCTCC GCTT GG-GCGCGCGCGGGGA     TCGGCTCTAATTGGC 100 32
   Rru_A0769  907087 ..  907131 - -17.1  -5.01732   AATCTCTTCAAAAAA GATGCGCGACGCATCTGGGGC CCT GATCCAGATGCGTCGCGCTTG GTCGAAGGCCCCGGG 100 117
   Rru_A0768 NONE
   Rru_A0767  904185 ..  904201 -  -9.3  -3.52906   GGAGGGGCATAAATA              GGGCGGG ATC CCGGCCC              CGGCAACCCTTGCCG  66 71
   Rru_A0766  902861 ..  902876 -  -2.6  -3.75461   GAAATGGCGATTAAA              TTTG-GC CCG GCTCAAA              ATTAATGTGTCCCGA  52 293
   Rru_A0742  867543 ..  867556 -  -3.7  -4.07568   CCCTTTCGCCGAAAA               GGGGC GGGG GGCCC                GGAAGGATCGCTCAG  59 37
   Rru_A0741  865308 ..  865321 -  -2.3  -3.30124   CCTGATCTGTGACAA               CGACC ACGA GTTCG                ACGGCTGGTTTCGCG  44 519
   Rru_A0736  862264 ..  862274 -  -2.4  -3.53224   CAGCGGCGTGGGAAA                 CAGC ATG GCGG                 CGTCCTTACACCAAA  47 44
   Rru_A0735 NONE
   Rru_A0734 NONE
   Rru_A0733 NONE
   Rru_A0732  859025 ..  859044 - -12.1  -3.57144   TTGCCGACGCCGAAA            GGGCGGC CGCTCC GCCGCCC             GTGGCCGTCGCTCCC  74 371
   Rru_A0730 NONE
   Rru_A0729 NONE
   Rru_A0728  856064 ..  856095 -  -4.3  -4.38712   CGGACGGCGAGAAAA      GCCATCGGGTGTG GACGAT CACCCCCAACGGT       CCGGCGATGTTCAAG  69 312
   Rru_A0722 NONE
   Rru_A0721  849349 ..  849368 -    -2  -4.07687   ATTCTTTCGTCAAAA            GCCCGC GAAAGCAA GGGGGC             AAGCCGGTTAAAGGT  57 45
   Rru_A0720  848787 ..  848810 -  -5.2  -3.02043   AAGGTCTCGTCAAGA          CGAC-CGCCCC GAT GGGACGTGTTG          AGCGCGCCCGTGATC  46 56
   Rru_A0717  844309 ..  844367 - -26.8  -3.74693   GCGGAGGGGATCAAA GGGGAGCGGCGATGGCGCGGAAAACCAG TGC CCGCTTTTCCGCGCCATCGCCGCTCTAG AAAGAGCGCGCGGCC 100 22
   Rru_A0716 NONE
   Rru_A0715  841424 ..  841434 -  -5.4  -4.18934   GACGACCGCAAGAAA                 GCTT TCG AAGC                 GAAGTATCAACACGA  69 356
   Rru_A0713  840376 ..  840386 -  -8.2  -2.94099   TTTGTCTATTACATA                 GCCG GAA CGGC                 GCGGTATCGCAATGG  55 61
   Rru_A0712  839589 ..  839640 -    -6  -4.34402   CTGCTGACAGGAAAA CATCCGCCTCGGGG---TCTCC-GAG GTCT CTCTGGAGACCTCCCCCGGGCGGATG TGCGATCTTATAGCA  71 98
   Rru_A0711  838722 ..  838751 - -15.8    -5.055   GGAACCTGTAAAAAA       CGAA-CGGGCGGC CTTAC GCCGCCCGCTTCG       AGGTCACTGCATCAC 100 29
   Rru_A0710 NONE
   Rru_A0709 NONE
   Rru_A0708  835393 ..  835451 -  -2.4  -5.78622   GGAGGGGAAAAAAAA CAAGAGTAGAGCGGCGCAGGGGAAAG GGGAAAGGG CTTTTCCCCGCGCCGCTCT-CAAA-G AGGTCTGTCGGCTGG 100 50
   Rru_A0707  835099 ..  835125 - -11.5  -3.28712   GGCTGTGGGCCATAA         GACCCCGGGCC GGGAT GTCCCGGGATC         AGTCCTTGGGCTTGG  72 24
   Rru_A0706 NONE
   Rru_A0705  833674 ..  833696 - -10.5  -4.86731   TCGGCTCAAACAAAA           GGGCCGCCC GCCGG GGACGACCC           TTTGATAGTCTTGGC 100 59
   Rru_A0704  832715 ..  832749 - -20.8  -3.28791   ACCTCGTCGCGACAA     GCCCAAGGCGGCGAAA GGC CTTCGCTGCCTTGGGC     CTTGTAGCAGGATCA 100 38
   Rru_A0703 NONE
   Rru_A0702  830418 ..  830430 -  -5.5  -3.16564   GGTCTATCGTATGAA                GATCG TGC CGACC                GTGTTCTCCAGCCGT  49 476
   Rru_A0700 NONE
   Rru_A0699  828976 ..  828995 -  -4.2  -3.10012   AACCTGAGGAGGTAA            GGCTTGGGA TTT TCCCG-GCC            TACAGGCTCGAGGGG  46 231
   Rru_A0698  827674 ..  827705 - -10.9  -3.28712   GCTCCGGGGGTAGAA      CAGAGAGCGTGAA ACAGGA TCCCCGCTCTCTG       CTCTAAGATATTGAT  72 91
   Rru_A0694 NONE
   Rru_A0693  821279 ..  821299 -  -5.3  -4.11216   CGTTTATTTGCAAAA            CCGCGGC TTTGACG GCAGCGG            CTTTCCCCCCGAAGG  64 462
   Rru_A0685  809186 ..  809207 -    -3  -4.09243   GACAGGCGCCGAAAA          GC-G-GGGAC CAAG GTCCCTCTGC           GCGGCTAAATCCAGC  57 30
   Rru_A0679  802375 ..  802404 -  -4.3  -3.50853   TCCGGTCAATCATAA       GCGAT-TAAAGGGG TCC CCCTTTCAGACCGC       TCTTTCTCATCGGCC  52 41
   Rru_A0678 NONE
   Rru_A0677  800034 ..  800058 - -19.3  -3.14931   GCGACGCGGCATGAA          GCGGGCCAAGG TGG CCCTGGCCCGC          AAGTTGGCCACGGTG 100 224
   Rru_A0672 NONE
   Rru_A0667  790408 ..  790445 -  -9.2  -4.07568   TCCCGTCGCGCAAAA   GCT-GCCGCGTCAAAGG GGCCT CCTTTGACGCGGTGAGG   TCTAGTCGTGGTCGG  76 27
   Rru_A0666 NONE
   Rru_A0665 NONE
   Rru_A0664  787215 ..  787226 -  -7.2   -4.2349   GGGTCAGAGGGAAAA                GCGC AGTT GCGC                 CTTTGTGCCTCGGGA  71 2
   Rru_A0663  786709 ..  786727 -   -16  -4.67552   CCGACGAAAAAATAA             CCCGGACC CGG GGTCCGGG             GAGTCCAAACAGCCG 100 62
   Rru_A0662  786058 ..  786081 -  -2.2  -2.89039   AATGAGCCCGACATA          GCGACCTCCG GGAT CAGCGGCGGC           GGGGCTGGCGGGGAG  40 15
   Rru_A0661  785264 ..  785279 -  -3.9  -3.02461   CAAGCCTCCCTAAGA              CGCCC TTCGGG GAGCG               AGCATAAGGGGATTG  43 164
   Rru_A0660 NONE
   Rru_A0659  780927 ..  780963 -  -7.4  -3.14931   GGGATGGGGCATGAA   CCCCGC-C-CAGATGG TGGGCGC CCATCTGCAAGCGGGG   CGTCTGGTCGAAATC  54 133
   Rru_A0657  779404 ..  779428 - -10.8  -3.06796   CGCTATGTGAGCGAA         CGGGTGGTGTC GATC GACACCACC-G          CCTCGGGCGGCAATG  62 80
   Rru_A0655 NONE
   Rru_A0654  774302 ..  774349 -  -8.3  -3.61398   GCGCCGGCCCAATAA GGGAAGGGGGGCGTCCGGGG CCTTGGCAC CCCCGCCCGCCCGC-TCCCC TACAGGGTTTGCGAG  64 25
   Rru_A0650  771326 ..  771343 -  -3.4  -4.07687   AGGCTTCGCCCAAAA             TGCCACG TCCGC CG-GGCA             ACGGAAAGGGGCGGG  59 63
   Rru_A0649 NONE
   Rru_A0648  769768 ..  769782 -  -3.5  -2.78463   AGGGCTGGGACGATA               CCAAG CGCTC CCTGG               CCGCCGGTGCTATCG  41 398
   Rru_A0639 NONE
   Rru_A0638  758961 ..  758985 -    -5  -4.08216   CGACTCTTTGGAAAA         CGAAACGGTCC CGGG GGAC-GCCTCG          GACAGACCGGCGATT  61 189
   Rru_A0637  758466 ..  758489 - -11.7  -5.14563   CCGCCCATGAAAAAA          GGGACGCCC GGACTG GGGCATCCC           TTTTTCATGACAAGA 100 77
   Rru_A0636 NONE
        actP  756018 ..  756045 - -15.5  -4.63218   CGCTCTTGAAGAAAA        CCCCCCGGCGC GTCCTG GCGTCGGGGGG         CTGAAACAGCAGGTA 100 115
   Rru_A0634 NONE
   Rru_A0633  753183 ..  753193 -  -2.4  -3.38046   TGGCCATGTCAAACA                 GGGC GAG GCCG                 GGGCGGCCCTCGAAG  46 346
   Rru_A0631  749468 ..  749484 -  -4.3  -4.56597   CGCCTGCGCTAAAAA              GAGAGGG AAG CCCCTTC              TTGGGCGGGGCCGCC  70 44
   Rru_A0624 NONE
   Rru_A0623  740468 ..  740478 -  -8.2  -4.17089   CCTAAACTTTCAAAA                 GCGC GCG GCGC                 AGCAACGGGCGCGCG  75 1
   Rru_A0622 NONE
        bchH  735093 ..  735120 - -14.8  -2.62396   TACTCCCTGACACGA        GAGACCGCGGCC GTTA GGCCGCGACCCC         TTCCGATACGTTTTC  76 11
        chlL NONE
   Rru_A0619 NONE
   Rru_A0618  732025 ..  732040 -  -2.4  -2.65298   TTTATTCATGAGAAG              GCCTCC TGAG GGTGAC               GTGCTATCCTGGGAA  38 29
   Rru_A0617 NONE
   Rru_A0616 NONE
   Rru_A0615  729945 ..  729979 -  -3.6  -3.03441   GATCAGGCTCCAAGA    GTCCGTTCGCGCGAA CAAGCT TTCACGCAAAGGG-C     TCCCAGGCGGCGGGC  43 93
   Rru_A0614 NONE
   Rru_A0613  728055 ..  728070 -  -3.2  -3.57462   TATCTCACCGGTAAA              TCCCCG GGCT CAGGAA               GTCAACGGCGGCCTG  51 203
   Rru_A0612  724563 ..  724596 - -11.7  -4.02535   TGATAAGGAAGCAAA     TCTCCGTCGCGCTCTG GTC CAGAGCGCT-CGGGGA     TCCACTTTAATCTGT  84 156
   Rru_A0607  719156 ..  719169 -  -5.2  -3.33696   CTGCCCTCGAACGAA               GCGG TCTGCG CCGC                GGTCGAAGCCGGGGC  51 248
   Rru_A0592  702533 ..  702560 -  -4.9  -4.13767   GCTTTGAGCGGAAAA       GGCGAT-A-CCGG TTGT CCGGGCGATCGCC        GCTCTCTCTCATCGA  61 126
   Rru_A0591 NONE
   Rru_A0590 NONE
   Rru_A0589 NONE
   Rru_A0588  698417 ..  698452 - -17.6  -3.60792   TCGCCAAGCGCCAAA    GGAAAGGGCCGTCTCC GCAA GGAGGCGGCCCTTTTC     CATTGTGAGGGGGGG 100 218
   Rru_A0577  685833 ..  685859 -  -9.2  -3.76125   GCAGCTTAAGTGAAA         CCGCCCGGGGGG TCG CCGCCCGCTCGG         CCGAGGGCGGCGAGG  71 165
   Rru_A0571 NONE
   Rru_A0570  676734 ..  676751 -  -2.5  -2.61831   GTCACGGGAAAAACT             CCGGCTG GTTA CGGACGG              GCGGACGGTAAGGCC  38 57
   Rru_A0569  676282 ..  676293 -  -4.4  -3.05384   GCTCCCCTCAGCGAA                CCTT AAGG AAGG                 ACATTACAAGACTGC  46 111
   Rru_A0568  674041 ..  674059 - -11.6  -3.05384   CGCCGCCTGAGGGAA             GGGGGGGC TGA GCCTCCCC             CCTCAAAGAGCGGGA  68 96
   Rru_A0566  668705 ..  668743 - -23.2  -3.05384   CGGTGCGGGATTTAA   GGCGCAGACGCCCGGC CGCTTTC GCCGGGCGTCTGCGCT   GCAAGCGGTTTCAGG 100 36
   Rru_A0565  667748 ..  667766 -    -8  -3.30771   GGACACGGGGGAGAA             GGCCGCGC CGG GCAAGGCC             GAGGCCAAGGCGGCG  56 492
   Rru_A0563 NONE
   Rru_A0562  664583 ..  664601 -  -4.4  -3.01712   TGTTCCGCGGCAAGA             CCGGACAC GAG GGGTACGG             CCATTGAGCGGGAAC  46 94
   Rru_A0559  661206 ..  661219 -  -4.5  -4.45664   GGAATTTAATTAAAA               TGCGC TGCA ACGCA                ACCATTCCTCCATGA  70 6
   Rru_A0558  658869 ..  658882 -  -5.2  -3.14564   CGATGTCGGGATGAA               CCGC TTGCCC GCGG                CCCCGGGGGCCGAGA  49 207
        purU  657094 ..  657119 - -11.1  -3.64716   GGAGTCTCGAAAAGA         TGTGGTCCCGC TAGC GCAGGACCACG          GTCTTCGTGCCGTTG  77 10
   Rru_A0555  656541 ..  656552 -  -2.2  -2.93393   GGTCATGGGAGAAAT                CCTC CTCA GAGA                 GCGTCGGCGTCGATT  40 19
   Rru_A0554  655159 ..  655197 - -11.7  -3.53012   CTCCCGCCCGGGAAA  CG-CCGGCCCTGCCTTCC GCTA GGAAGACAGGGCTGTTCG   ATTTCGAACGACGCC  74 40
   Rru_A0553  653490 ..  653523 -  -2.9  -4.08216   GGAGGCCTCTTAAAA     GCCGCTTGCGGGAAT CCTG ATCCCCGTCCGCCGC      TCCAAGATCCTGATA  57 216
   Rru_A0552  652509 ..  652524 -  -7.5   -4.1899   CGATTTCACCGAAAA              CGCCG TACGCG CGGCG               CCGCTGGCCGCCTTC  74 321
   Rru_A0550  649321 ..  649359 -  -2.2  -4.58585   GATCGAAATAACAAA  GCCTCTCCG-CAGGGCC TTTCCT GGCCGAGACGGAGGTGC   AGAGACCAAAGTATA  68 68
   Rru_A0549  647977 ..  647993 -  -9.3  -2.82156   AGTGAAATGCAAGGA              CCGGGCC AAG GGCCCTG              TTGGGGGCAATGCCT  57 164
   Rru_A0548 NONE
   Rru_A0547  645271 ..  645284 -  -5.9  -4.07885   CACGCCGCCCTAAAA               GCCGA AGCC CCGGC                ATCAGGTCGAGGCTT  65 27
   Rru_A0546  643042 ..  643067 - -14.7  -5.55769   GGCTATAACAAAAAA         CCCCTCCGGCC AGAA AACCGGAGGGG          TGGGATGCGAAAAAC 100 63
        fliF NONE
        fliG NONE
        fliH NONE
   Rru_A0542  638569 ..  638582 -  -3.7  -3.14132   CCCTTTTGCGACCAA               TCGCG ATCC CGCGC                CGGACCTGACGCGCG  45 115
   Rru_A0541 NONE
   Rru_A0540 NONE
        flhA  633628 ..  633648 -  -2.5  -4.36649   GAGACGACAAAAGAA            CGCTTGATC CTG GATGAAGAG            GTGAAGGGGGCTTGC  65 446
   Rru_A0535 NONE
   Rru_A0533 NONE
   Rru_A0532  627225 ..  627256 - -12.8  -2.70932   CGGGGCTGTGAACGA      CGCCCGGCGCCGCC TGCG GGGGGCGCGGCGCG       GCCGGTCACAGCGTC  69 53
   Rru_A0531  625327 ..  625338 -  -3.6  -3.64703   CCGCGCTCAGGCAAA                GCGA AACG CCGC                 CCATAGACATGCCTT  51 112
   Rru_A0530 NONE
   Rru_A0529 NONE
   Rru_A0528  622571 ..  622583 -  -6.9  -3.15544   CGCGAGCGCGAGGAA                CGCGA TCG CCGCG                ATCAGGCCGCCTTGG  52 53
   Rru_A0525  619384 ..  619404 -    -4  -3.56821   ACGAGATGTGGGAAA           TCGACGCCGG TAT CCGG-G-CGA           TGGTTCAATACAAGG  51 340
   Rru_A0519  612920 ..  612950 -  -2.4  -2.73875   GCCCCCGCAATAGGA       TCCCGGGCGC GGCGGTTTTAG GCGCCGGGGG       AGGTTGGCGGCTCGG  39 12
   Rru_A0518  611732 ..  611753 -  -2.1  -2.64218   AGGGGCCACTATAAG           GCTCCGCCA AGGC CGGCGGATG            AAGAAAAAGGAAAGT  38 64
        ppnK  610422 ..  610446 -  -6.9  -2.79302   ATGACCCTGATCAGA          GCGGCGCGGCC CGG GGATGCGCCGT          TTCTTCCCCAGATTG  48 495
   Rru_A0512 NONE
   Rru_A0511 NONE
   Rru_A0510  603132 ..  603166 - -14.3  -2.68259   AAGACTAGGAGAGTA    GCCGTCCGCCGGGGGA TCTG TCCACCGGCAGA-GGC     CCCCGGCAGAGAGAT  76 514
   Rru_A0508  601688 ..  601709 -  -2.1  -4.56597   GCCGCCGTTGAAAAA           CTGCTGGCCG ATC CGGCGGGC-G           CGGCGAAGATGCTGG  67 488
   Rru_A0502  587260 ..  587272 -  -4.7  -3.08812   CTTTGCCGAACAAAT                CGCTC GGT GCGCG                GCCTTTCATCCGTTT  46 93
   Rru_A0500  585084 ..  585100 -  -7.9  -2.89564   GCGGGATCGGACATA              TCGGGCG GAC CGCCGGA              AAGGAACGACAAGGA  55 119
   Rru_A0499 NONE
   Rru_A0498 NONE
   Rru_A0497  582233 ..  582259 -  -2.9  -3.55548   GAATAGGCGCCCAAA        GCCAGAAC-GCG ACGA CGATGTGCTGGC         CTCTCAGGTCTATGC  47 35
   Rru_A0492  577748 ..  577772 -  -5.5  -3.64703   TCGCCCTGATGGAAA          CCTTCGCCGCC CTG GCCGGAGAGGG          GCGGGCGGTGCTGGT  57 241
   Rru_A0484 NONE
   Rru_A0483  567111 ..  567148 -  -9.2  -3.90112   TGGCTTTGAAGGAAA   GTC-CCCGCGTTAAAGG GATTT CCTTTAACGCGGTCGGC   TTTCAGGGCCCTTTG  73 97
   Rru_A0482  566026 ..  566042 -  -5.9  -2.52543   ACGTCCTTTAAGGGA              TTTTGCC ATC GACAAAA              CCAAGGCGACTTAAA  45 167
   Rru_A0481  563973 ..  563993 -  -7.5  -3.12351   TCCGGTTACATCGAA            GGGACGCCA CCA TGACGTGCC            TTCGAGCACAATAAC  52 103
   Rru_A0480 NONE
   Rru_A0479 NONE
   Rru_A0478  560706 ..  560725 - -10.7  -5.20154   ACAGAATTCAAAAAA            CCCAGCC TTAACC GGCTGGG             TTTTTTGCGATTCGG 100 54
   Rru_A0476  558886 ..  558916 -  -8.9  -2.77899   GGGGGTCAGCAAGGA      TCGCCGGGGCCACG GTAT CGGGCCCCCGG-GA       AACACCCCCTGATCA  57 147
   Rru_A0475 NONE
   Rru_A0474  556392 ..  556420 - -10.1  -3.02144   CTACGCCCCGGAAGA        CGCGCCGCGCTAC GCC GTGGCGCTGTGCG        TCGAGCATGGCGGCG  60 317
   Rru_A0465  545269 ..  545290 -  -4.4  -3.64703   CCGCCTGGAGCGAAA           CCAATGTC TCGCTC GACATGGG            CCGTCAGGGCGGCTC  55 126
   Rru_A0460  539759 ..  539774 -  -7.5  -3.89354   TTGGGAAAGCAAGAA              CGCCG ATTGGG CGGCG               ATCTTGAAGCCACTC  66 267
   Rru_A0457 NONE
   Rru_A0456  536267 ..  536281 -  -2.7  -2.83522   ATTGGCCGAGGAAAC               CGGCC TGATC GCCCG               CGCCCTCTATTCCGC  41 313
   Rru_A0453  530289 ..  530307 -    -8  -3.05596   GACGGGGCCATGGAA             CGGCGAGC CGT GCGCACCG             GTCCTCCCCCCAACT  56 452
   Rru_A0448 NONE
   Rru_A0447 NONE
   Rru_A0446  524789 ..  524809 -  -8.1  -4.25104   CCCGGGTGACGAAAA            CCGGGGACG GGC CGACGCCGG            CCAAAGGTCGAACCC  75 124
   Rru_A0445 NONE
   Rru_A0444  522805 ..  522827 - -16.3  -3.55946   GTACCGGAAACAATA           CAGGGGCGC ACAAG GCGCCCCTG           GGGTCTCAATGCTCG  93 172
   Rru_A0443 NONE
   Rru_A0442  520454 ..  520496 - -12.5  -3.02144   TGACGCCGCCGAACA GGCGCGCCGCGCCGCCGCCG ATGT CCGCGCCGCCGCCGC-CGCC CTGACCGAGCAATCG  67 117
   Rru_A0440  517222 ..  517257 -  -3.8  -3.53012   CCGCGGTGCTTGAAA    GCACCCAGGATCCGGAG CTG CGCCGCTTTCTGGG-GC    TTGATCCCGGAGTGG  51 230
   Rru_A0438  513356 ..  513375 - -13.6  -3.84246   TCCGCAACGAGCAAA            CGCGCCAA TCCC TTGGCGCG             AAAGTTTGCCGTCCT  91 44
   Rru_A0437  512049 ..  512077 - -18.2  -4.58395   GTGATGGCCCAAAAA        GAAACCGGCGCC ATAAA GGCGCCGGTTCC        AAATCCGAGAGGTGT 100 55
   Rru_A0435  509093 ..  509134 - -13.8  -2.96452   ACCGGCATAAGCAGA GCCGTT-CCGGAAG-CGCCC ATGG GGGCGACTCCCGGGAACGGT GATCCAGGGGAGGTC  75 204
   Rru_A0434  506448 ..  506459 -  -2.2  -3.55563   AGGCCACGCCGGAAA                CGGA TCAT TCCA                 GGGAATAGGATCCCA  47 18
   Rru_A0433 NONE
   Rru_A0432 NONE
        ksgA  503147 ..  503178 -  -6.5   -3.7282   GGAGCGCATCAAGAA     GGATCAGGCGGCGGC CAAG GCCGCCGTC-G-CCC      GGGCTTAAACCGACC  63 30
   Rru_A0427  499366 ..  499378 -  -6.9  -5.40072   GGCGCCCGAAAAAAA                CAGCG TGT CGCCG                AAAGCGATAGGGCTG  95 239
   Rru_A0426  498920 ..  498959 -  -9.9  -3.14132   CGGGCGCGGTAGGAA  GGGGTGGGAAGAGCGCG GGGGGG CGCGCCCTTCCCAAGCA   GCCAAGCAGGTCCGG  65 43
   Rru_A0425  498394 ..  498435 -  -9.9  -3.72757   GATAAGTTAAGAGAA GGGGGCCCTCCCGGGACCCG TGT CGGGGCGGGAG-GGGCGCCC CGTGGCGGACGCCCC  76 68
   Rru_A0424  498163 ..  498175 -  -4.7  -2.74122   GCGGATCAGAAATAG                GCGGC CAA GCCGA                TGATCCCGATCAAGA  43 3
   Rru_A0423  497679 ..  497693 -  -8.5  -5.73339   ATAAGCATAAAAAAA               CCCCC GTAGA GGGGG               GGACCGGGGCGGGCG 100 52
   Rru_A0422 NONE
   Rru_A0421  496701 ..  496726 - -20.5   -3.5936   CGCAAACGCGCCAAA         GGCCCCGCATG ATGC CATGCGGGGCC          CAAGAAAGGCGATAG 100 48
   Rru_A0420  495800 ..  495814 - -12.8   -3.9941   TCGTCGAGAAGGAAA               CCGCCG TTC CGGCGG               AGCGGGCGCGGGTGG  82 409
        rpsF  490731 ..  490759 -  -2.4  -3.09516   CTTCCGACGACGGAA       GAACGGACGGCGG GGAG CAGCCATC-ATTC        AGCTCCTTCTCGCAA  41 20
        rpsR  490499 ..  490509 -  -2.4  -2.72511   CGGAGGCGGGGAAAC                 CCCG CTT CCGG                 CCAGGGACGCCTTAC  39 37
   Rru_A0412 NONE
        rplI  488805 ..  488861 - -21.6  -2.60032   GGGCCGGGAAAAAGC GGACGTCCCCACCCCCGTACCACCGGC ACAA GGCGGCGGCA-AGGGATGGGGACGGCC CCTGTCAGCGAACGG 100 57
   Rru_A0410  487142 ..  487168 -  -3.5  -4.05788   CTGCGGCAAAGGAAA         GGGCTCCGGCG CGAGT CGTCGGAGCTT         TATAGGCCCGGCGGC  59 54
   Rru_A0409  485969 ..  485988 -  -2.8  -2.77192   AACCCGTCCAATAAT            GGCC-AGGA AAT TCATTGGCC            GCTCCCCTCCCTCAC  39 17
   Rru_A0408 NONE
   Rru_A0407  484426 ..  484458 -  -8.3  -3.27525   GGCGGTCAAAGGGAA     CGGCGG-CGGCGCG CCTAAT CGCGCAGTCCGGCG      CGGATCGGGCCCTCG  59 7
   Rru_A0406 NONE
   Rru_A0405 NONE
   Rru_A0404  480739 ..  480751 -  -9.1  -3.59979   GCGGCCTACGGGAAA                CCCGA TGC TCGGG                ATTTGCTCTAATCGT  68 33
   Rru_A0403 NONE
   Rru_A0399  475949 ..  475961 -  -2.6  -3.26471   CGATCCGCAGATGAA                GACC GGCCG GGCC                CTGGGCTTGCGCGGC  44 173
   Rru_A0397  473975 ..  474021 - -15.1  -3.44051   CCGCCAGCAGCACAA CGCCGACGGCGATCACCAGCAG GGCG CGGCCGGTCATCGCGG-CGGCG CCTTGGCGGCGTAGC  90 12
   Rru_A0396  472207 ..  472220 -  -4.5  -3.30124   TTGGACGCGCCACAA               GGC-GC CCC GCTGCC               GGTTCCGCGACCACG  49 115
   Rru_A0395  471195 ..  471236 - -17.9  -3.60792   GCGGGAAGCGCCAAA GGCGCCCCCGGCGGCCGATC AGG GCTTGGCCGCCGGG-GCGGC GTCCTTGGCTCCGGC 100 2
   Rru_A0394 NONE
   Rru_A0393 NONE
   Rru_A0392 NONE
   Rru_A0391  467990 ..  468007 -  -3.4  -3.90744   GCCCCCTGGAAATAA             GCGGGCT GGCAA AGCCC-C             TCGGATCATTCGGGG  56 228
   Rru_A0389  466446 ..  466463 -  -4.8  -3.53012   CCTTCCTGGGCGAAA             GCCGGCG GAAGG CGCC-GC             GATCAGGCGGGGACG  52 28
   Rru_A0386  464038 ..  464053 -    -6  -3.43203   CGATCACAAGATGAA              CGTGGC GGAG GCCTCG               ACCGCCCCCCGGGCC  55 302
   Rru_A0381  458332 ..  458378 - -18.7  -3.94634   GACCACCTGAAATAA CGCCGGCGCCCGAGGGAGGGAC CTTG ATCCGTCCCCCGGGCG-CGCCG ATTCTCGACCAGGCA 100 454
   Rru_A0378  455101 ..  455111 -  -2.4  -3.54424   GGCGATCGGCGCAAA                 GCCC CAA GGCC                 CCAAGGACTGGCCGT  47 49
   Rru_A0377 NONE
   Rru_A0376  452093 ..  452109 -  -9.3  -3.62522   CAACCTGGGCAACAA              GGGCCGC ACG GCGGCCG              GCGATGTTCAGGTGA  68 487
   Rru_A0368 NONE
   Rru_A0367  441665 ..  441681 -  -3.6  -3.16191   GCACATCGGGATCAA              GCCCCT CGCGC AGGCGC              TTGGCCCGGTACCAG  45 108
   Rru_A0366  439781 ..  439819 - -12.5  -2.91695   TTCATGCCGAAACTA   TCTTTCAGCCCAACGAC GTGTT GTTGTTGGGCCGAGAGA   GCGCGGGCGTTCCCC  66 200
   Rru_A0364 NONE
   Rru_A0363 NONE
   Rru_A0362  436464 ..  436489 -   -19   -5.4505   GCGGCGAATAAAAAA         CGGCCGCCGG TGGGGG CCGGCGGCCG          TTTAGCGCAGGATGG 100 57
   Rru_A0361  435436 ..  435454 -  -7.3  -4.57569   TCATCCTTGTAAAAA             CCGCCCC CAAGC GGGGTGG             ATTAGCCCAGCACCC  76 27
        mtnA  434246 ..  434264 -  -3.1  -2.78596   GATCCGGGCATCAGA            GCG-CC-CC GTC GGCGGTCGC            CGCCGCACCTTTGCC  41 2
   Rru_A0359  433539 ..  433564 - -16.9  -3.53224   GAGTCTCCTTGGAAA         GCCCGAGGCCT TGGC AAGCCTCGGGC          TTGGGCAGGCGTCAG 100 37
   Rru_A0358 NONE
   Rru_A0357  432141 ..  432174 -  -3.1  -3.91084   TTATCTTGAAGCAAA     TCGTCGTCGCATTCTG GAG CAGAATGCT-CGGGGA     TTTGCTCTAAAAGCG  56 32
   Rru_A0356  430671 ..  430688 - -12.7  -4.98531   CTGGGAAACGAAAAA             GGACCCC GATC GGGGTCC              TTTTCCAGGAAAATC 100 56
        guaA  428919 ..  428936 - -10.5  -5.37345   CGCAATCACAAAAAA             GCCCGCA TTTA CGCGGGC              TTAGATGTGTTTTCG 100 75
   Rru_A0354  427452 ..  427462 -  -8.2  -3.85698   TTCCGCTGCCATAAA                 GCGC CGC GCGC                 AGAAACGCGCTACAC  69 35
   Rru_A0353  426161 ..  426193 -  -9.8  -5.14563   TCGGCTACGAAAAAA      TCGCCCTGCGCC GTACGATCT GGCGCAAGGCGG      GACGTTCTTTCACGC 100 162
   Rru_A0352  425249 ..  425267 -    -8  -3.34043   CTCAGCACCTGAGAA             CGGTGGCA GCT CGCCGCCG             GCTATTCGCGTCAGC  59 36
   Rru_A0350 NONE
   Rru_A0349  422396 ..  422408 - -10.5  -3.58365   CAGGACAGCACATAA                GCGGC CCC GCCGC                GGTTCCCCCACACCC  73 305
   Rru_A0337  408811 ..  408824 -  -3.7  -4.47259   ATCAGAACAGCAAAA               GCGGG TCTG CCCCC                CTTTTTCTTTTTTTC  68 133
   Rru_A0333  404933 ..  404972 - -21.5  -3.53012   CCCTTTTGGCGGAAA  CGACCCCGGGCCGGTGGA GGAGA TCCACCGGCCCGGGG-CT  TTGACACGCGGTGCT 100 57
   Rru_A0330  402000 ..  402032 -  -5.6  -3.12351   CTGGTTTAGAGTCAA     TC-CCG-CGCCCTGTG GAC CAGAGGGCGACGATGA     TTGGCTTGACCATGA  49 46
   Rru_A0308 NONE
   Rru_A0307 NONE
   Rru_A0306 NONE
   Rru_A0305 NONE
   Rru_A0304  371234 ..  371263 -  -2.7  -5.54894   AATCGATGAAAAAAA       CCACTGGGTTAGG ATGC CCCATCCCGATGA        TTGTCCATGTGGAAA  95 436
   Rru_A0298  364603 ..  364620 -    -4  -3.94184   AAGATAGAGAAAAGA             GCCGGC GTGTTA GCCGGG              CAGTTGTCCTCCGCG  56 73
   Rru_A0297  363471 ..  363494 - -15.2  -4.58663   ACCAGTTCTTAAAAA          CCCGTCGCGG GATC CCGCGGCGGG           TTTTTTCTTTAGAGC 100 34
   Rru_A0295  360842 ..  360866 - -15.7   -3.5936   TTGAAAGCGTCGAAA          TCCCCCCTTGG AGG CCAAGGGGGGC          GCCCGGTCCCGCCTG  93 57
   Rru_A0294  359990 ..  360042 -   -17  -3.96216   TCGTTACGCAAACAA GCGCTCGGGCGTTCGCTCCCTCCGC CGGG GCGGATG-AGCGGACACCGGAACGC CAAGACGATCCGCCA 100 157
        rpsA  358022 ..  358047 - -23.3  -5.24129   GCGGCGCACAAAAAA         GGCGCCGCCGG AGAT CCGGCGGCGCC          CCTCGCGTCCCTTGC 100 56
   Rru_A0292  357529 ..  357545 -  -3.5  -3.89501   CAATACCGGGACAAA              GGCGCGG AAG CCGTTCC              CCATTCCCGCGCGGC  56 54
   Rru_A0291  357010 ..  357039 - -20.7  -4.72272   CGCGGGCATGAAAAA       GCCGGGGGCCGCT CGAA AGCGCCCCCCGGC        CCTGACCGCCGAGGC 100 79
   Rru_A0289  354698 ..  354713 -  -8.2  -4.13014   TTCAGACTCCTAAAA              CCGGCG GTCG CGCCAG               CCTTCGACCAGATGG  71 4
   Rru_A0288  353167 ..  353215 -   -11  -3.53012   GGCGCTTGCGCGAAA TCCAGGGCGATCCCGA-AGCCGCC CAT GGCGCCTATCTGG-CCGCCCTTGA TCTTTACGAGGGGAT  70 508
   Rru_A0282  346862 ..  346895 - -11.6   -4.4267   CGGCAAAAGGGAAAA     CCCATATCCGCCGG CGTTTT CCGGCGGACGAGGG      GACATCGGTCCGTCG  93 60
   Rru_A0281 NONE
   Rru_A0280  344552 ..  344602 - -15.8  -3.21099   TTGCTTGACGATCAA GATCTTAGAACGATGTGCGGGAA TCAGAT TTCCCGCATATCGTTCTAA-ACC GGTTCGATATCACCC  85 19
   Rru_A0279  343314 ..  343356 - -16.2  -3.32844   CGCCTGACCTGATAA CGGGCACGGCTGTCAGGCCC CTC GGGCCTGACAAACGCCGCCG CTTAATCCCATTCGG  89 27
   Rru_A0275  339631 ..  339643 -  -6.9  -3.51232   CTGCGGGCAAACGAA                CGGGA ATT CCCCG                GACTACGGGTGGCGG  58 58
   Rru_A0274  338240 ..  338257 -  -2.6  -3.14132   CCCCTGCGGGAGGAA             GGCTTG GCTGCA CAGGCC              GCGCCCGTCGTCCCC  43 71
   Rru_A0273  337335 ..  337354 - -12.1    -5.626   GAGGCGATAAAAAAA            GGGGGCC TTCGCG GGCCCCC             TTTGCCGGTGGGATC 100 62
   Rru_A0265  329055 ..  329068 -  -5.9  -2.87344   CACCGGGGCCAGACA               GCAGC GTCG GCCGC                TAAGGGGGGGCGACG  48 102
   Rru_A0264  327178 ..  327224 - -10.8  -3.65353   GCAAAGGATCCTAAA GGGCGGCG-AT-CGGCCCGGTC ACGGG GACGGGGCCGAAGGCGCCGCGC CTTAAGGGGTGGCGG  73 27
   Rru_A0263  326212 ..  326227 -    -9  -5.00616   CGGCCTTTTAAAAAA              GACGGA TCGG TCCGTC               AAACCGCAAGCGCGG 100 24
   Rru_A0262  323958 ..  323968 -  -3.2  -4.67982   CCTGACCCAACAAAA                 GCAG GTC CTAC                 GGCAAAAATCCAAAA  70 330
   Rru_A0261  322825 ..  322860 - -20.4  -4.25283   ACGCCGCGACCAAAA    GACCGCCGGGCCCGGA GACA TCCGCGCCCGGCGGTT     TTCGCATGCGGGCAC 100 61
   Rru_A0252  313409 ..  313419 -  -8.2  -3.72576   GCTCTGGGGAGGAAA                 CGGC GAG GCCG                 GGGGATGGAGGGTCC  67 141
   Rru_A0251 NONE
   Rru_A0250  310951 ..  310962 -  -7.2  -2.72511   CCTACTCCGTCAAAG                GGCG TCGA CGCC                 ATGCAAGCGCATCAG  50 8
   Rru_A0249  309380 ..  309390 -  -2.4  -3.15544   GGTGATGTGCATCAA                 GGGG TGT CCCA                 TTTGGTTTTTCGTGT  43 86
   Rru_A0248  308351 ..  308370 -  -5.6  -2.73364   GCGTCACGGGAAGGA            CGGCCGGT TTCA ACCAGCCT             GTTTTCTTGAGGGGT  46 15
   Rru_A0247  307240 ..  307271 - -20.9   -4.4078   TCGCTCCAACGAAAA      CGCCCCCGCTCGC GGATCG GCGAACGGGGGCG       TTTTTTAGTCAGTCT 100 53
   Rru_A0246  305452 ..  305464 -  -3.3  -2.52464   CTTCGGCGGAACTCA                TGGGG TGA CTCCA                GACTCGGGGGAAGGG  40 10
   Rru_A0245  304585 ..  304596 -  -7.2  -3.56099   GACAATTGCGCGAAA                GCCC CGGC GGGC                 CACCGGTTCCGGCAG  58 90
   Rru_A0244  302869 ..  302891 -  -3.3  -3.64703   TTGCTCGGAGGGAAA           GGGCGATCG CGAAT CGATCGTCA           GGAGCGGCGAAATCA  51 165
   Rru_A0243  301383 ..  301397 -    -7  -3.85165   GAGTTCAAAGGGAAA               CCCGGG GCG CCCTGG               TTCCTTGCTATCAGT  63 103
   Rru_A0242 NONE
   Rru_A0241  295185 ..  295220 -  -8.8  -2.52516   TTCTGGACGATCAAG    CTCTGAGAGCGGGGAC CGGA GTCCCCGCTCACCGCT     TTAAACATCCACCGA  56 26
   Rru_A0234 NONE
   Rru_A0233  288057 ..  288075 -  -2.2  -3.02043   AATCTTGCCTGAAGA             TGGGGATC GCC GCCCCCCG             ACGACAAGAAAAAAG  41 116
   Rru_A0232  285266 ..  285289 -  -3.8  -3.04715   GATGGCGTGGAAAAC          CGGCGC CCCTTTTTCCAC GCGCCG           CTGTGTTCGGGTCGG  43 43
   Rru_A0231  284531 ..  284552 -  -9.3  -4.15833   ATCACCACTGGAAAA           GCGCCGGCG CCTT CACCGCCGC            CTGATATCGCCGGGT  79 45
   Rru_A0229  281012 ..  281053 - -10.9  -2.64051   TCACGAGACAAGGGA GGCGCGATAAGGGGACGCGA CGG TCA-GCCCGCTTATCGCGCG GGTCCGGCGGCTTCG  64 16
   Rru_A0228 NONE
   Rru_A0227  279667 ..  279679 -  -4.7  -4.25104   GCGGGGGGATGAAAA                CCAGG AAC CCGGG                AGGCCGAGAAAGTCG  65 93
   Rru_A0226 NONE
   Rru_A0225 NONE
   Rru_A0224  276610 ..  276621 -  -5.8  -4.00038   CATCATTAGGAGAAA                GAGG CGGC CCTC                 TATCCCCAGGCGACA  65 25
   Rru_A0222  273489 ..  273521 - -18.5  -4.07568   TGGTGCGCTCGAAAA      CCCGGCCGCCCTT TTTGCGC AAGGGCGGCCGGA      TAGCATGGTCGGGTG 100 49
         pgk  272210 ..  272234 - -17.2   -5.4833   CGATCCAAGAAAAAA          GAGCCGGCGT TGGCG ACGCCGGCTC          GGTAGCGATCGCGGG 100 48
   Rru_A0220  271126 ..  271155 -  -8.7  -3.66646   AACACGTCAGGGAAA       TCGG-CCGTTATAT CGG ATAGAACGGTCCGA       TCCCCCCGGTGTTCA  68 453
   Rru_A0215  266728 ..  266738 -  -8.2  -3.65902   CCTATTGCATGGAAA                 GCCC GGC GGGC                 ATCAAGCCCGACACC  65 335
   Rru_A0213 NONE
   Rru_A0212 NONE
   Rru_A0211  263091 ..  263127 -  -9.3   -4.4078   CTTCGTCAAGTAAAA    TCGCCCCTTTTGGCGCA AGG CGCGGCAAACAGGGCGC    CCGGGTCGTGGCGGA  82 49
        rpmB  262644 ..  262682 - -15.3  -3.39668   GCGCAAAGCCCAGAA  CGCCAACGGCCCGCCGAT CAAG ACCGGCGGGCCGT-GGAA   AGCGGAATACCGTGC  86 47
   Rru_A0209  261561 ..  261572 -  -7.2  -3.01712   CCTCGCCCTGCAAGA                CCGC AAGC GCGG                 CCTGCTCGACGGGCT  51 100
   Rru_A0204  253679 ..  253707 -  -3.8  -3.65046   CCCTTATGGCAAGAA        CCGTACCAGTCG GGGCG CGATTACTACGG        GCGGACAGAAAGGTC  51 175
   Rru_A0203  253244 ..  253284 - -12.6  -4.16943   CGCCAGAGGCGAAAA  CGGAGGCCTTCAGAAGTC GGTCT GCCTTGTGAAGGCTTCCG  TTTCAAGGCGGTCGT  95 40
   Rru_A0202 NONE
   Rru_A0201  249362 ..  249376 -  -7.2  -3.29144   GTACTTGCTTCAGAA               TCTTTC GTC GAAAGA               TTCCCGCATAGTCTA  54 506
   Rru_A0199  247674 ..  247718 - -12.9  -3.14564   CGACCCGTGGACCAA GCTGGCCGAGGGGGCGGCGGCGC TTG GCGGCG-CGCCCCC-CGG-C-GC TCTTGATCTAGCGAA  72 411
   Rru_A0193  235455 ..  235473 - -10.2  -3.28712   CTCTGCTGGCCAGAA             CCTGCAGG CTT CCGGCAGG             GGCTTGGCGGTTCAC  68 464
   Rru_A0191  232975 ..  232985 -  -6.8  -2.70354   CTCCCCAGAAATTTA                 CTCG TTA CGAG                 AGAGTAACTGCCGTA  50 361
   Rru_A0190  230667 ..  230687 -  -2.4   -4.7497   CGCACCGAGGAAAAA            CCTGCGCT GTCGA AGCGATGG            TGGGCCTGCGTCGAT  72 159
   Rru_A0189 NONE
   Rru_A0188  226961 ..  226997 - -15.9  -3.04322   GGGAACGGTGCAATA    CCGCCCGACGAAAGAAG AGA CGTCTTTCATCGGGCGT    CCAAGGTCGAGAAGG  83 113
   Rru_A0186 NONE
   Rru_A0185 NONE
   Rru_A0184 NONE
   Rru_A0183 NONE
   Rru_A0182 NONE
   Rru_A0181 NONE
   Rru_A0180  214239 ..  214266 -  -2.7  -5.40474   AGGGGTCGAAAAAAA        TGGCTTGAAAA GGGCTG TCCTCAAGCCG         GCCATTCGAGGGGCG  85 62
   Rru_A0179  211584 ..  211594 -  -2.4  -2.91264   GTGCCCATCGACAGA                 GGCC TTT GGCT                 AACGAGGACAATAAT  40 24
   Rru_A0178  211103 ..  211116 -  -5.9  -4.56597   TCGGCCTTGGAAAAA               CCGCG CTTG CGCAG                GAACTCGTTACGATC  74 177
   Rru_A0177  210263 ..  210311 -  -2.2  -4.10429   AACCATTGCGGAAAA TCCTGGAGGC-GGCACGCCGACC GACC GACCGGCACGCCAGAACCCAAGT CCTGTCAAAGGCTTG  57 397
   Rru_A0176  209093 ..  209109 -  -2.1  -3.89336   CCAAGGAAACGGAAA              GCGGGGT TCA ACGCCCC              CTCAGCGACCACCTT  54 77
   Rru_A0175  206210 ..  206227 - -12.7  -3.30441   TATGATTTTTTAGAA             TCCCCGC TGGC GCGGGGA              ACATCGGATTAGTAC  76 117
   Rru_A0174 NONE
   Rru_A0173  203754 ..  203768 -  -4.2  -2.95192   TGCAATTGCAGAAAG               CGCGAC ATG ATCACG               GGGCTCCTAAGGTCG  45 21
   Rru_A0172  202656 ..  202688 -  -3.4  -3.47526   CGACCAAGCGAAACA     CCAGGAAGTC-ACGG ACGG CCATCGTCTTACTGG      CCCGTCGGCGGGCAG  49 19
   Rru_A0171 NONE
   Rru_A0170  201213 ..  201242 -  -7.7  -3.18681   CCGCAAGGGGACGAA       GGCGGGATCGGCC ATGG GGCTTATTCCGCC        AGCCGCCGCAGCAGC  57 16
   Rru_A0169  200293 ..  200307 -    -5  -2.70932   GGGCGTTTTCAACCA               CGATGA CCA TCATCA               CCCGAAGGCTCCTCT  43 4
   Rru_A0168  199825 ..  199837 -  -7.7  -2.86164   CGGTCAAGCACCAGA                CCCAT CTC ATGGG                CGGTTCATCCCCGCG  55 200
   Rru_A0165  197943 ..  197971 - -13.9  -3.35278   GCAACCAGATATCAA        GCCGTTGATTCCA GAC CGGAATCAGCGGC        TTTTTGCTTTGGGGA  81 276
   Rru_A0160  186816 ..  186838 -  -9.8  -2.71712   CCGCCTTTGCCAAAG           CCGGGCTTCC TTG GGAAACCCGT           TTGGGCGCGACGCCT  61 59
   Rru_A0159  185109 ..  185124 -  -4.7  -2.58861   GAGGACTTCCACAAG              CCTGA GGCCGT TCAGG               ACGCCACGACTCAGA  43 36
   Rru_A0158  182949 ..  182999 -  -4.6  -4.08216   CTATCTGGCCGAAAA CGTCACCACCGCCCGGCTGG-CCGC CGAG GCGACCCTGTCGGGC-ATGGAG-CG CCATTTCGATCCGGT  62 337
   Rru_A0155  179544 ..  179560 -  -7.9  -3.53012   GGTGGTCTGCCGAAA              TGGGGGG GCT CCCCGCA              CCCGGGCCCGGCTAT  62 48
   Rru_A0154  178584 ..  178596 -  -3.3  -3.53012   GCTGGGCGGCTCAAA                GCGCT CAG AGCCC                GAGAACGTCGTGCAT  49 17
   Rru_A0153  177771 ..  177781 -  -2.4  -3.86063   ATAAAAAGTTAAGAA                 CGGC CAA GACG                 ATCCCGCTTCAATTT  54 113
   Rru_A0149 NONE
   Rru_A0148 NONE
   Rru_A0147  170109 ..  170119 -  -2.4  -3.53012   GCGTGCGCCGCGAAA                 GGCG CCG CCCC                 GGGGGATCAGTGCGA  47 32
   Rru_A0146  169416 ..  169426 -  -2.4  -3.82202   CACTTCCAAATACAA                 GGCC TTT GGCA                 AAAGCAAGGTCTTTG  52 89
   Rru_A0145  168600 ..  168616 -  -3.6  -4.08216   TGATCGGCTGGAAAA              GCTGGC TTGTC GCCATC              GGCGGAGTCCTTGAG  59 181
   Rru_A0144  167480 ..  167504 - -16.4  -4.09685   GGTCATCGGGGAAAA          GGGGGGCCCC GCGCA GGAGCCCCCC          TTTGTGGTTAGACGA 100 33
   Rru_A0142  165758 ..  165801 - -15.8  -3.57144   CTCTTGACCGGGAAA GCCCAGCGGCCGGACCCGCC GATC GATGGGGCCGGCCGCTGGTT ATCCGCCGCGGCGGT  93 43
   Rru_A0141  164123 ..  164138 -    -4  -3.40403   GCCCTTCTACTAGAA              GAGATCC AAT GG-TCTC              CCGAACAGCCGCTCC  49 399
   Rru_A0132  153763 ..  153779 -  -2.2   -3.2794   GCTGACCCAGATCAA              CGCC CTTCTTGGT GGCG              ACCGCGACGGCATCC  44 455
   Rru_A0130  151096 ..  151125 -  -3.4  -4.25104   CGCCCGCCAGCAAAA       GCGCCCAG-CCGG CCAGC CCGATCAGGGCGA       GGGCGGCGGTCAGGT  62 354
   Rru_A0129  149802 ..  149822 -  -2.5  -4.15066   GACGCAGAAAGGAAA            CGATGGCTT GCA AAGGCATGG            GCGCTCCGTCGGGCC  60 124
   Rru_A0128  148611 ..  148621 -  -2.4  -3.02144   CGATGTCGGGGAATA                 GGCC AAG GCCC                 TATTCTGTGGCCGGG  41 25
   Rru_A0123 NONE
   Rru_A0122  142092 ..  142102 -  -6.8  -2.62184   CCTTGCGGGAGATCA                 TCGG CCG CCGA                 GGGGGGATCAGCCGC  49 33
   Rru_A0121  141115 ..  141144 -   -15  -2.94695   TCACCATCAACCAGA       CCTCCACCGCCG TCGCCT CGGCCGTGGAGG        AACAGCGGGCGGCGA  74 251
   Rru_A0119  139134 ..  139162 - -21.1  -4.78839   AACGGCATAAGAAAA        GGGCGCCCCGTTA GTA TAACGGGACGCCC        CTGGAAAGCCAAACC 100 48
   Rru_A0118  137661 ..  137675 -  -7.8  -4.13767   TTGGTCACGGCAAAA               CGATGG AGC CCACCG               CCCTGGCCTCGGCCT  69 405
   Rru_A0102 NONE
   Rru_A0101 NONE
   Rru_A0100 NONE
   Rru_A0099  113009 ..  113031 -  -4.8  -4.68593   GCTATCACGCAAAAA           TCAGGGCG TAAACCG CGCCCTCA           GCGTTGCTTGATGAC  73 23
   Rru_A0098  111695 ..  111735 - -13.3  -3.59979   TCGGCCCATCCTAAA  GCGGTAAGCGGAAAACCGG TAT CCGATTTTCCGCCCACTTC  TTTATGGGGCCAAAG  88 27
   Rru_A0097  111161 ..  111179 -  -2.2  -2.50345   AGGGGAGAAAACCAT             CCGCCGAG GAC CCGGGCTG             GGTCAGTATGGGCAC  37 104
   Rru_A0096  110131 ..  110145 -  -8.5  -2.52464   CCGGCTGTGAAGGGA               GCGGC TTACG GCCGC               AAGGCCCGCCGGTCG  52 16
   Rru_A0082   95042 ..   95055 -  -6.7  -2.73243   AGGGACCGGGGAAAT               TACCC GATG GGGTA                TTGAACGACGCAGCC  50 11
   Rru_A0081   92970 ..   92982 -  -9.1  -2.60615   ACCCTTCGCAAATAT                CACGC CGG GCGTG                TGAGGGAAGACAATT  56 207
   Rru_A0080   91689 ..   91703 -  -2.7   -4.1585   CCAGAAGGTCGAAAA               GCTGC TAAGC GCCGC               CTGATCGACGGTCGC  60 114
   Rru_A0072   82553 ..   82572 -    -2  -3.53012   GGCCCCTGGGTCAAA            GGGGGATC GCGC GATGGCCC             GTCGGGTAGGGCGCC  47 457
   Rru_A0070   81106 ..   81122 -    -3  -3.90291   ACCCCCCGAACGAAA             GGGAGCA CCGA TG-TCCC              ACGAGCCCACTTTTC  54 219
   Rru_A0069 NONE
   Rru_A0068   78814 ..   78828 -  -5.6  -3.54424   GCCCAGGTCGCCAAA               CGCATC AGG GAGGCG               CTGTGACGGTAGGAT  55 15
   Rru_A0065 NONE
   Rru_A0064 NONE
   Rru_A0063 NONE
   Rru_A0062 NONE
   Rru_A0061   68762 ..   68783 -  -7.1  -4.59773   GGCGACCGCCAAAAA           GGCCAAGGC GGCG GCCGAGGCC            CAGTCGTCAGCGGCC  78 32
   Rru_A0058   64939 ..   64949 -  -2.4  -4.50159   CGGAACGGAAACAAA                 GGCC CGG GGAC                 AGCCTCAACGGGGAT  66 30
   Rru_A0057   62032 ..   62065 - -13.9  -2.73159   CCAAGCCCTGGAAAC     CCAGACCGCCGCCCTT CTC AAGGCCGGCGG-CTGA     TCGGGGTCAGGCCCC  73 191
   Rru_A0055   60081 ..   60115 - -27.4  -3.18264   CGCTGTATTCATTAA     GAAAAGGGCCGCATCC CGG GGATGCGGCCCTTTTC     CAATTCAAGAAGGCT 100 49
   Rru_A0053 NONE
   Rru_A0052   53831 ..   53862 - -15.3  -5.48303   ACAAGCCCAAAAAAA      GAAAAGGCGCCTT TCCGTC AAGGCGCCCTTTC       AAAAGGGTGGTCAAC 100 68
   Rru_A0051 NONE
   Rru_A0050 NONE
   Rru_A0049   51166 ..   51185 -  -5.6  -4.23988   TCACACCAAAAAACA            CTGCGGAC GGGG GCCCGGAG             AACGGCGGGGGCCCC  68 65
   Rru_A0048   50526 ..   50540 -  -3.4  -3.28712   GCCGGTTCTCTAGAA               CCGCAC GCG GAGCAG               GGCGACGCCAAAGCC  47 5
   Rru_A0047   48518 ..   48542 - -12.8  -3.14132   CGCCTTGCTCAGCAA          CCGCAGCCCG TCTTG CGGGGTGCGG          CTGATCTATGACGGA  69 253
   Rru_A0041   43685 ..   43712 -  -5.4  -3.53091   ACGCTTTCGCTGAAA        GCGTCCCGGGAAG AAG CCGCCCGGGG-GC        ACATGGACGGTTTTC  55 151
   Rru_A0040 NONE
   Rru_A0039   42139 ..   42160 -  -4.3  -3.86822   GAAGTCTTCCAGAAA           GCGTCATTC CACC GCCTGACGC            AAGGCGAGCGCCGTG  59 7
   Rru_A0038   41240 ..   41252 -  -7.7  -4.12188   CCATGACCTTCAAAA                CCCTT TCC AAGGG                CGGCTCAGCCGCCGG  71 30
   Rru_A0037 NONE
   Rru_A0036 NONE
   Rru_A0035 NONE
   Rru_A0034 NONE
   Rru_A0033   37269 ..   37292 -  -5.8  -2.55216   CAGGATCCAGAACAT          CATCGGCCGG CCTC CCGGTCGCCG           GGCGGGGTGGGCGGT  46 1
   Rru_A0032   35763 ..   35782 -  -6.3  -3.85698   TTCGGCCCTGACAAA            CGGGGGG AACGAG CCCCCCT             CTCTTTAGGCGGGGG  62 30
   Rru_A0030 NONE
   Rru_A0029 NONE
   Rru_A0028   32509 ..   32522 -  -2.4  -3.89346   GGTCCACCGGACAAA               GGAA ATGATG TTCC                TTTTTTGTTCTTAAG  54 416
   Rru_A0021 NONE
   Rru_A0020   25410 ..   25430 -  -6.2  -3.06815   ACGGCTGCGAATACA           TGACCAACG GCAC CGT-GGTCA            TTCTCGGTCAGGTCG  49 444
   Rru_A0017   18079 ..   18093 -  -2.8  -3.74693   GTTTATTCCATGAAA               GAGATC ATG GATCTG               GTGGTCGCGGTGACC  53 425
   Rru_A0015   15940 ..   15955 -    -6  -3.54543   ACGGATCCTCGGAAA              GGGCGG ACCC CCGTCC               CTGAAAAACCGGCGG  55 302
   Rru_A0014 NONE
   Rru_A0013 NONE
   Rru_A0012 NONE
   Rru_A0011 NONE
   Rru_A0010   10263 ..   10285 - -10.5  -2.92192   CCCGATCGAACCAGA           TCGCCGACG CGAGC CGTCGGCGT           GCTGCACCTTCAAAA  62 267
   Rru_A0009    9540 ..    9578 - -16.1  -2.90496   CGGGCCCCCAAACGA  CCGAAGGGCGCCGCTTCC GACA AGAAG-GGCGCCCTTTGG   GGATCTGTTGGGCCC  81 120
   Rru_A0008    9094 ..    9119 -  -4.1  -4.45765   GGCAAAAGGAATAAA         GACTTT-CGC ATCTATG GCGGAAAGTC         TCTAGATGCTTTTTT  68 114
   Rru_A0007    8719 ..    8744 - -21.9  -4.52589   TCCCCCCACAGAAAA         CCCCCGCTGGC GCAA GCCAGCGGGGG          TTTTGTTTGGCCGGG 100 44
