RAF_ORF0002 fold IPR012336 - Thioredoxin-like fold RAF_ORF0003 abc IPR003439 - ABC transporter-like RAF_ORF0003 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0003 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0003 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0003 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0004 transporter IPR000412 - ABC-2 transporter RAF_ORF0005 oxidoreductase IPR000103 - Pyridine nucleotide-disulphide oxidoreductase, class-II RAF_ORF0005 synthase-like IPR017938 - Riboflavin synthase-like beta-barrel RAF_ORF0005 beta-barrel IPR017938 - Riboflavin synthase-like beta-barrel RAF_ORF0011 synthase IPR001269 - tRNA-dihydrouridine synthase RAF_ORF0011 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0012 beta IPR011330 - Glycoside hydrolase/deacetylase, beta/alpha-barrel RAF_ORF0012 hydrolase IPR011330 - Glycoside hydrolase/deacetylase, beta/alpha-barrel RAF_ORF0012 glycoside IPR011330 - Glycoside hydrolase/deacetylase, beta/alpha-barrel RAF_ORF0013 modification IPR003442 - tRNA threonylcarbamoyl adenosine modification protein TsaE RAF_ORF0013 trna IPR003442 - tRNA threonylcarbamoyl adenosine modification protein TsaE RAF_ORF0013 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0013 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0013 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0013 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0014 periplasmic IPR006127 - Periplasmic solute binding protein family RAF_ORF0014 solute IPR006127 - Periplasmic solute binding protein family RAF_ORF0014 binding IPR006127 - Periplasmic solute binding protein family RAF_ORF0020 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0020 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0020 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0020 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0021 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0021 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0021 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0021 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0022 synthase IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0022 atp IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0022 complex IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0022 bacterial IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0023 synthase IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0023 atp IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0023 complex IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0023 bacterial IPR002146 - ATPase, F0 complex, subunit B/B', bacterial/chloroplast RAF_ORF0024 atp IPR000454 - ATPase, F0 complex, subunit C RAF_ORF0024 synthase IPR000454 - ATPase, F0 complex, subunit C RAF_ORF0024 complex IPR000454 - ATPase, F0 complex, subunit C RAF_ORF0025 synthase IPR000568 - ATPase, F0 complex, subunit A RAF_ORF0025 complex IPR000568 - ATPase, F0 complex, subunit A RAF_ORF0025 atp IPR000568 - ATPase, F0 complex, subunit A RAF_ORF0027 fold IPR012336 - Thioredoxin-like fold RAF_ORF0029 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0030 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0030 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0030 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0030 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0040 copper IPR003782 - Copper chaperone SCO1/SenC RAF_ORF0040 chaperone IPR003782 - Copper chaperone SCO1/SenC RAF_ORF0040 fold IPR012336 - Thioredoxin-like fold RAF_ORF0048 dehydrogenase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF0048 reductase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF0052 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0052 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0052 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0052 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0055 acyl-coa IPR015876 - Fatty acid desaturase, type 1, core RAF_ORF0056 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0057 ribosomal IPR000529 - Ribosomal protein S6 RAF_ORF0057 elongation IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 RAF_ORF0057 factor IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 RAF_ORF0057 ribosomal IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 RAF_ORF0057 translation IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 RAF_ORF0059 ribosomal IPR000244 - Ribosomal protein L9 RAF_ORF0059 rnase IPR009027 - Ribosomal protein L9/RNase H1, N-terminal RAF_ORF0059 ribosomal IPR009027 - Ribosomal protein L9/RNase H1, N-terminal RAF_ORF0060 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0060 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0060 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0060 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0061 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0061 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0061 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0061 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0062 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0064 unknown IPR009739 - Protein of unknown function DUF1311 RAF_ORF0065 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0067 channel IPR006685 - Mechanosensitive ion channel MscS RAF_ORF0068 membrane IPR001708 - Membrane insertase OXA1/ALB3/YidC RAF_ORF0073 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0076 major IPR020846 - Major facilitator superfamily domain RAF_ORF0077 major IPR011701 - Major facilitator superfamily RAF_ORF0077 major IPR020846 - Major facilitator superfamily domain RAF_ORF0079 modification IPR002218 - Glucose-inhibited division protein A-related RAF_ORF0079 enzyme IPR002218 - Glucose-inhibited division protein A-related RAF_ORF0079 trna IPR002218 - Glucose-inhibited division protein A-related RAF_ORF0080 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0081 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0081 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0081 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0081 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0083 abc IPR003439 - ABC transporter-like RAF_ORF0083 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0083 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0083 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0083 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0085 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0089 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0089 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0089 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0089 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0089 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0089 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0092 dna IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0092 topoisomerase IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0092 c-terminal-like IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0092 arginine IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0092 repressor IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0094 porin IPR023614 - Porin domain RAF_ORF0097 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0098 reductase IPR029500 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF RAF_ORF0101 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0101 enzyme IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0101 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0101 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0101 beta-barrel IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0101 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF0103 major IPR005828 - General substrate transporter RAF_ORF0103 major IPR011701 - Major facilitator superfamily RAF_ORF0103 major IPR020846 - Major facilitator superfamily domain RAF_ORF0106 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0106 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0106 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0106 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0106 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0106 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0106 ligase IPR024909 - Cysteinyl-tRNA synthetase/mycothiol ligase RAF_ORF0106 synthetase IPR024909 - Cysteinyl-tRNA synthetase/mycothiol ligase RAF_ORF0107 ribosomal IPR001865 - Ribosomal protein S2 RAF_ORF0112 transferase IPR015424 - Pyridoxal phosphate-dependent transferase RAF_ORF0113 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0113 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0118 decarboxylase IPR009006 - Alanine racemase/group IV decarboxylase, C-terminal RAF_ORF0118 c-terminal IPR009006 - Alanine racemase/group IV decarboxylase, C-terminal RAF_ORF0118 barrel IPR029066 - PLP-binding barrel RAF_ORF0120 abc IPR003439 - ABC transporter-like RAF_ORF0120 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0120 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0120 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0120 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0125 ribosomal IPR002150 - Ribosomal protein L31 RAF_ORF0126 binding IPR006073 - GTP binding domain RAF_ORF0126 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0126 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0126 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0126 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0127 glutamate IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF0127 kinase IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF0128 secretion IPR007792 - Type IV secretion system, VirB3 / TrbD / AvhB RAF_ORF0129 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0129 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0129 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0129 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0130 plasmid IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0130 transfer IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0133 plasmid IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0133 transfer IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0134 plasmid IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0134 transfer IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0135 plasmid IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0135 transfer IPR007688 - Conjugal transfer, TrbL/VirB6 RAF_ORF0140 trna IPR016009 - tRNA methyltransferase TRMD/TRM10-type domain RAF_ORF0140 methyltransferase IPR016009 - tRNA methyltransferase TRMD/TRM10-type domain RAF_ORF0140 beta IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0140 alpha IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0141 translation IPR008991 - Translation protein SH3-like domain RAF_ORF0143 archaeal IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0143 bacterial IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0143 membrane IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0145 peptidase IPR000223 - Peptidase S26A, signal peptidase I RAF_ORF0145 peptidase IPR000223 - Peptidase S26A, signal peptidase I RAF_ORF0145 signal IPR000223 - Peptidase S26A, signal peptidase I RAF_ORF0146 rna-binding IPR014720 - Double-stranded RNA-binding domain RAF_ORF0147 binding IPR006073 - GTP binding domain RAF_ORF0147 alpha IPR015946 - K homology domain-like, alpha/beta RAF_ORF0147 domain-like IPR015946 - K homology domain-like, alpha/beta RAF_ORF0147 homology IPR015946 - K homology domain-like, alpha/beta RAF_ORF0147 beta IPR015946 - K homology domain-like, alpha/beta RAF_ORF0147 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0147 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0147 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0147 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0148 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF0149 beta IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0149 alpha IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0152 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0152 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0152 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0152 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0155 peptidase IPR001940 - Peptidase S1C RAF_ORF0155 peptidase IPR009003 - Trypsin-like cysteine/serine peptidase domain RAF_ORF0157 reductase IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0157 transmembrane IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0157 dehydrogenase IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0158 reductase IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0158 transmembrane IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0158 dehydrogenase IPR000701 - Succinate dehydrogenase/Fumarate reductase, transmembrane subunit RAF_ORF0160 transmembrane IPR000515 - MetI-like domain RAF_ORF0160 transporter IPR000515 - MetI-like domain RAF_ORF0160 abc IPR000515 - MetI-like domain RAF_ORF0161 ribosomal IPR006032 - Ribosomal protein S12/S23 RAF_ORF0162 ribosomal IPR000235 - Ribosomal protein S5/S7 RAF_ORF0163 factor IPR004540 - Translation elongation factor EFG/EF2 RAF_ORF0163 translation IPR004540 - Translation elongation factor EFG/EF2 RAF_ORF0163 elongation IPR004540 - Translation elongation factor EFG/EF2 RAF_ORF0163 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0163 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0163 factor IPR009022 - Elongation factor G, III-V domain RAF_ORF0163 elongation IPR009022 - Elongation factor G, III-V domain RAF_ORF0163 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0163 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0163 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0163 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0163 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0163 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0164 translocase IPR001901 - Protein translocase complex, SecE/Sec61-gamma subunit RAF_ORF0164 complex IPR001901 - Protein translocase complex, SecE/Sec61-gamma subunit RAF_ORF0165 translation IPR008991 - Translation protein SH3-like domain RAF_ORF0165 ribosomal IPR014722 - Ribosomal protein L2 domain 2 RAF_ORF0166 l12 IPR000911 - Ribosomal protein L11/L12 RAF_ORF0166 ribosomal IPR000911 - Ribosomal protein L11/L12 RAF_ORF0167 biogenesis IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein RAF_ORF0167 ribosomal IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein RAF_ORF0167 ribosomal IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein RAF_ORF0168 ribosomal IPR001790 - Ribosomal protein L10/acidic P0 RAF_ORF0169 l12 IPR000206 - Ribosomal protein L7/L12 RAF_ORF0169 ribosomal IPR000206 - Ribosomal protein L7/L12 RAF_ORF0169 l12 IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_ORF0169 adaptor IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_ORF0169 ribosomal IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_ORF0169 c-terminal IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_ORF0170 dna-directed IPR015712 - DNA-directed RNA polymerase, subunit 2 RAF_ORF0170 polymerase IPR015712 - DNA-directed RNA polymerase, subunit 2 RAF_ORF0170 rna IPR015712 - DNA-directed RNA polymerase, subunit 2 RAF_ORF0173 aminopeptidase IPR011356 - Leucine aminopeptidase/peptidase B RAF_ORF0173 peptidase IPR011356 - Leucine aminopeptidase/peptidase B RAF_ORF0173 peptidase IPR011356 - Leucine aminopeptidase/peptidase B RAF_ORF0174 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0174 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0174 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0174 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0176 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0176 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0176 aminoacyl-trna IPR018150 - Aminoacyl-tRNA synthetase, class II (D/K/N)-like RAF_ORF0176 synthetase IPR018150 - Aminoacyl-tRNA synthetase, class II (D/K/N)-like RAF_ORF0180 barrel IPR012349 - FMN-binding split barrel RAF_ORF0183 amidase IPR000120 - Amidase RAF_ORF0183 amidase IPR023631 - Amidase signature domain RAF_ORF0187 glutamate IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF0187 kinase IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF0187 kinase IPR011817 - Uridylate kinase RAF_ORF0189 major IPR011701 - Major facilitator superfamily RAF_ORF0189 major IPR020846 - Major facilitator superfamily domain RAF_ORF0196 large IPR015507 - Ribosomal RNA large subunit methyltransferase E RAF_ORF0196 ribosomal IPR015507 - Ribosomal RNA large subunit methyltransferase E RAF_ORF0196 methyltransferase IPR015507 - Ribosomal RNA large subunit methyltransferase E RAF_ORF0196 rna IPR015507 - Ribosomal RNA large subunit methyltransferase E RAF_ORF0196 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0197 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0197 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0197 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0197 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0201 beta IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0201 alpha IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0203 resistance IPR001036 - Acriflavin resistance protein RAF_ORF0204 dna-binding IPR000119 - Histone-like bacterial DNA-binding protein RAF_ORF0205 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0205 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0205 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0205 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0206 signal IPR022941 - Signal recognition particle, SRP54 subunit RAF_ORF0206 recognition IPR022941 - Signal recognition particle, SRP54 subunit RAF_ORF0206 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0206 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0206 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0206 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0212 radical IPR007197 - Radical SAM RAF_ORF0215 symporter IPR001991 - Sodium:dicarboxylate symporter RAF_ORF0216 beta IPR011322 - Nitrogen regulatory PII-like, alpha/beta RAF_ORF0216 regulatory IPR011322 - Nitrogen regulatory PII-like, alpha/beta RAF_ORF0216 nitrogen IPR011322 - Nitrogen regulatory PII-like, alpha/beta RAF_ORF0216 alpha IPR011322 - Nitrogen regulatory PII-like, alpha/beta RAF_ORF0217 synthase IPR007115 - 6-pyruvoyl tetrahydropterin synthase/QueD family protein RAF_ORF0219 component IPR011603 - 2-oxoglutarate dehydrogenase E1 component RAF_ORF0219 dehydrogenase IPR011603 - 2-oxoglutarate dehydrogenase E1 component RAF_ORF0221 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0221 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0221 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0221 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0222 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0225 shock IPR013126 - Heat shock protein 70 family RAF_ORF0225 heat IPR013126 - Heat shock protein 70 family RAF_ORF0226 peptidase IPR001940 - Peptidase S1C RAF_ORF0226 peptidase IPR009003 - Trypsin-like cysteine/serine peptidase domain RAF_ORF0229 polymerase IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 delta IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 complex IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 gamma IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 dna IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 delta IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 c-terminal IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF0229 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0229 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0229 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0229 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0231 cytochrome IPR000298 - Cytochrome c oxidase subunit III domain RAF_ORF0231 oxidase IPR024791 - Cytochrome c oxidase subunit III RAF_ORF0231 cytochrome IPR024791 - Cytochrome c oxidase subunit III RAF_ORF0241 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0241 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0241 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0241 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0245 shock IPR013126 - Heat shock protein 70 family RAF_ORF0245 heat IPR013126 - Heat shock protein 70 family RAF_ORF0247 ribonuclease IPR001352 - Ribonuclease HII/HIII RAF_ORF0247 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF0248 helicase IPR014001 - Helicase, superfamily 1/2, ATP-binding domain RAF_ORF0248 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0248 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0248 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0248 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0249 fold IPR012336 - Thioredoxin-like fold RAF_ORF0253 dna IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0253 topoisomerase IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0253 c-terminal-like IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0253 arginine IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0253 repressor IPR024946 - Arginine repressor C-terminal-like domain RAF_ORF0258 transferase IPR011034 - Formyl transferase, C-terminal-like RAF_ORF0258 c-terminal-like IPR011034 - Formyl transferase, C-terminal-like RAF_ORF0262 atpase IPR005654 - ATPase, AFG1-like RAF_ORF0262 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0262 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0262 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0262 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0266 abc IPR003439 - ABC transporter-like RAF_ORF0266 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0266 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0266 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0266 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0274 synthase IPR001636 - Phosphoribosylaminoimidazole-succinocarboxamide synthase RAF_ORF0274 subdomain IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0274 fold IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0276 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0276 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0284 membrane IPR003423 - Outer membrane efflux protein RAF_ORF0284 outer IPR003423 - Outer membrane efflux protein RAF_ORF0284 efflux IPR003423 - Outer membrane efflux protein RAF_ORF0287 topoisomerase IPR001241 - DNA topoisomerase, type IIA RAF_ORF0287 iia IPR001241 - DNA topoisomerase, type IIA RAF_ORF0287 dna IPR001241 - DNA topoisomerase, type IIA RAF_ORF0287 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0287 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0287 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0287 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0287 dna IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0287 topoisomerase IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0287 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0287 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0288 peptidase IPR004447 - C-terminal-processing peptidase S41A RAF_ORF0289 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0289 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0289 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0289 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0289 histidine IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0289 c-terminal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0289 signal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0290 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0293 ribosomal IPR005822 - Ribosomal protein L13 RAF_ORF0294 ribosomal IPR000754 - Ribosomal protein S9 RAF_ORF0294 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0294 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0297 domain-like IPR015797 - NUDIX hydrolase domain-like RAF_ORF0297 hydrolase IPR015797 - NUDIX hydrolase domain-like RAF_ORF0298 cyclase IPR029787 - Nucleotide cyclase RAF_ORF0298 nucleotide IPR029787 - Nucleotide cyclase RAF_ORF0299 translation IPR008991 - Translation protein SH3-like domain RAF_ORF0299 ribosomal IPR014722 - Ribosomal protein L2 domain 2 RAF_ORF0299 factor IPR020599 - Translation elongation factor P/YeiP RAF_ORF0299 elongation IPR020599 - Translation elongation factor P/YeiP RAF_ORF0299 translation IPR020599 - Translation elongation factor P/YeiP RAF_ORF0304 membrane IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0304 efflux IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0304 pump IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0310 fold IPR011761 - ATP-grasp fold RAF_ORF0310 subdomain IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0310 fold IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0311 cell IPR005548 - Cell division protein FtsQ/DivIB RAF_ORF0314 c-like IPR009056 - Cytochrome c-like domain RAF_ORF0314 cytochrome IPR009056 - Cytochrome c-like domain RAF_ORF0316 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0316 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0317 major IPR011701 - Major facilitator superfamily RAF_ORF0317 major IPR020846 - Major facilitator superfamily domain RAF_ORF0318 ribonuclease IPR019307 - RNA-binding protein AU-1/Ribonuclease E/G RAF_ORF0318 rna-binding IPR019307 - RNA-binding protein AU-1/Ribonuclease E/G RAF_ORF0320 synthase IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0320 pseudouridine IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0320 catalytic IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0322 endonuclease IPR005135 - Endonuclease/exonuclease/phosphatase RAF_ORF0322 phosphatase IPR005135 - Endonuclease/exonuclease/phosphatase RAF_ORF0324 c-terminal IPR009014 - Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RAF_ORF0324 oxidoreductase IPR009014 - Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II RAF_ORF0325 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0325 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0325 factor IPR009022 - Elongation factor G, III-V domain RAF_ORF0325 elongation IPR009022 - Elongation factor G, III-V domain RAF_ORF0325 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0325 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0325 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0325 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0330 biogenesis IPR003544 - Cytochrome c-type biogenesis protein CcmB RAF_ORF0330 c-type IPR003544 - Cytochrome c-type biogenesis protein CcmB RAF_ORF0330 cytochrome IPR003544 - Cytochrome c-type biogenesis protein CcmB RAF_ORF0333 cytochrome IPR016174 - Di-haem cytochrome, transmembrane RAF_ORF0333 transmembrane IPR016174 - Di-haem cytochrome, transmembrane RAF_ORF0334 cytochrome IPR002326 - Cytochrome c1 RAF_ORF0334 c-like IPR009056 - Cytochrome c-like domain RAF_ORF0334 cytochrome IPR009056 - Cytochrome c-like domain RAF_ORF0337 chaperone IPR008978 - HSP20-like chaperone RAF_ORF0343 peptide IPR004374 - Peptide chain release factor 2 RAF_ORF0343 factor IPR004374 - Peptide chain release factor 2 RAF_ORF0343 chain IPR004374 - Peptide chain release factor 2 RAF_ORF0343 rna-binding IPR014720 - Double-stranded RNA-binding domain RAF_ORF0344 elongation IPR006297 - Elongation factor 4 RAF_ORF0344 factor IPR006297 - Elongation factor 4 RAF_ORF0344 factor IPR009022 - Elongation factor G, III-V domain RAF_ORF0344 elongation IPR009022 - Elongation factor G, III-V domain RAF_ORF0344 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0344 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0344 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0344 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0345 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF0348 fold IPR016024 - Armadillo-type fold RAF_ORF0351 cell IPR001182 - Cell cycle protein FtsW/RodA RAF_ORF0352 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0352 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0352 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0352 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0357 chain IPR001133 - NADH-ubiquinone oxidoreductase chain 4L/K RAF_ORF0357 oxidoreductase IPR001133 - NADH-ubiquinone oxidoreductase chain 4L/K RAF_ORF0358 transfer IPR010258 - Conjugal transfer, TrbG/VirB9/CagX RAF_ORF0362 transfer IPR010258 - Conjugal transfer, TrbG/VirB9/CagX RAF_ORF0364 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0364 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0364 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0364 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0365 secretion IPR003688 - Ti-type conjugative transfer system, TraG-like RAF_ORF0365 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0365 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0365 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0365 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0366 phosphatase IPR003695 - Ppx/GppA phosphatase RAF_ORF0372 unknown IPR022565 - Protein of unknown function DUF2608 RAF_ORF0373 unknown IPR022565 - Protein of unknown function DUF2608 RAF_ORF0375 dna IPR007695 - DNA mismatch repair protein MutS-like, N-terminal RAF_ORF0375 repair IPR007695 - DNA mismatch repair protein MutS-like, N-terminal RAF_ORF0375 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0375 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0375 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0375 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0376 isomerase IPR003500 - Sugar-phosphate isomerase, RpiB/LacA/LacB family RAF_ORF0381 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0381 factor IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF0381 sigma IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF0381 rna IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF0381 polymerase IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF0381 rna IPR014284 - RNA polymerase sigma-70 like domain RAF_ORF0381 polymerase IPR014284 - RNA polymerase sigma-70 like domain RAF_ORF0381 factor IPR016263 - RNA polymerase sporulation-specific sigma factor, SigK/SigE RAF_ORF0381 polymerase IPR016263 - RNA polymerase sporulation-specific sigma factor, SigK/SigE RAF_ORF0381 sigma IPR016263 - RNA polymerase sporulation-specific sigma factor, SigK/SigE RAF_ORF0381 rna IPR016263 - RNA polymerase sporulation-specific sigma factor, SigK/SigE RAF_ORF0384 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0384 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0384 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0384 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0385 acid IPR002293 - Amino acid/polyamine transporter I RAF_ORF0385 amino IPR002293 - Amino acid/polyamine transporter I RAF_ORF0385 transporter IPR002293 - Amino acid/polyamine transporter I RAF_ORF0386 regulatory IPR004516 - Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RAF_ORF0386 atp IPR004516 - Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RAF_ORF0386 ligase IPR004516 - Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RAF_ORF0386 phosphoribosyltransferase IPR004516 - Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RAF_ORF0386 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0386 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0387 abc IPR003439 - ABC transporter-like RAF_ORF0387 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0387 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0387 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0387 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0388 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0388 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0388 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0388 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0390 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0393 transport IPR003400 - Biopolymer transport protein ExbD/TolR RAF_ORF0396 major IPR011701 - Major facilitator superfamily RAF_ORF0396 major IPR020846 - Major facilitator superfamily domain RAF_ORF0397 membrane IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0397 efflux IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0397 pump IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0398 abc IPR003439 - ABC transporter-like RAF_ORF0398 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0398 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0398 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0398 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0399 dehydrogenase IPR012080 - Aspartate-semialdehyde dehydrogenase RAF_ORF0400 histidine IPR001310 - Histidine triad (HIT) protein RAF_ORF0402 beta IPR001353 - Proteasome, subunit alpha/beta RAF_ORF0402 proteasome IPR001353 - Proteasome, subunit alpha/beta RAF_ORF0402 alpha IPR001353 - Proteasome, subunit alpha/beta RAF_ORF0403 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0403 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0403 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0403 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0412 unknown IPR022565 - Protein of unknown function DUF2608 RAF_ORF0416 synthetase IPR000924 - Glutamyl/glutaminyl-tRNA synthetase RAF_ORF0416 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0416 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0416 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0416 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0416 synthetase IPR020058 - Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_ORF0416 catalytic IPR020058 - Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_ORF0417 dna IPR000380 - DNA topoisomerase, type IA RAF_ORF0417 topoisomerase IPR000380 - DNA topoisomerase, type IA RAF_ORF0420 fold IPR012336 - Thioredoxin-like fold RAF_ORF0422 core IPR017850 - Alkaline-phosphatase-like, core domain RAF_ORF0423 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF0424 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF0425 reductase IPR005913 - dTDP-4-dehydrorhamnose reductase RAF_ORF0429 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0431 membrane IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0431 efflux IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0431 pump IPR006143 - RND efflux pump, membrane fusion protein RAF_ORF0432 unknown IPR022565 - Protein of unknown function DUF2608 RAF_ORF0433 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0433 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0433 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0433 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0435 ribosomal IPR022801 - Ribosomal protein S4/S9 RAF_ORF0436 prenyltransferase IPR000537 - UbiA prenyltransferase family RAF_ORF0438 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0440 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0440 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0446 transferase IPR011034 - Formyl transferase, C-terminal-like RAF_ORF0446 c-terminal-like IPR011034 - Formyl transferase, C-terminal-like RAF_ORF0448 oxidoreductase IPR002023 - NADH-quinone oxidoreductase subunit E-like RAF_ORF0448 fold IPR012336 - Thioredoxin-like fold RAF_ORF0449 oxidoreductase IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H RAF_ORF0452 chain IPR000440 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 RAF_ORF0452 oxidoreductase IPR000440 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 RAF_ORF0459 core IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF0459 dna IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF0459 catalytic IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF0459 enzyme IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF0459 catalytic IPR013762 - Integrase-like, catalytic core RAF_ORF0462 dehydrogenase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF0462 reductase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF0464 amidase IPR002502 - N-acetylmuramoyl-L-alanine amidase domain RAF_ORF0465 protein-like IPR028082 - Periplasmic binding protein-like I RAF_ORF0465 periplasmic IPR028082 - Periplasmic binding protein-like I RAF_ORF0465 binding IPR028082 - Periplasmic binding protein-like I RAF_ORF0466 permease IPR001851 - ABC transporter, permease RAF_ORF0466 transporter IPR001851 - ABC transporter, permease RAF_ORF0466 abc IPR001851 - ABC transporter, permease RAF_ORF0467 abc IPR003439 - ABC transporter-like RAF_ORF0467 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0467 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0467 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0467 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0472 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0472 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0472 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0472 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0472 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0472 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0473 membrane IPR004776 - Auxin efflux carrier RAF_ORF0473 transport IPR004776 - Auxin efflux carrier RAF_ORF0474 transferase IPR002505 - Phosphate acetyl/butaryl transferase RAF_ORF0474 phosphate IPR002505 - Phosphate acetyl/butaryl transferase RAF_ORF0475 domain-like IPR029060 - PIN domain-like RAF_ORF0477 major IPR011701 - Major facilitator superfamily RAF_ORF0477 major IPR020846 - Major facilitator superfamily domain RAF_ORF0481 dehydrogenase IPR001557 - L-lactate/malate dehydrogenase RAF_ORF0481 dehydrogenase IPR015955 - Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RAF_ORF0481 c-terminal IPR015955 - Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RAF_ORF0481 glycoside IPR015955 - Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RAF_ORF0481 hydrolase IPR015955 - Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RAF_ORF0484 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0484 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0484 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0484 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0487 domain-like IPR015797 - NUDIX hydrolase domain-like RAF_ORF0487 hydrolase IPR015797 - NUDIX hydrolase domain-like RAF_ORF0488 cytochrome IPR023616 - Cytochrome c oxidase, subunit I domain RAF_ORF0490 ligase IPR002316 - Proline-tRNA ligase, class IIa RAF_ORF0490 iia IPR002316 - Proline-tRNA ligase, class IIa RAF_ORF0490 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0490 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0495 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0495 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0495 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0495 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0495 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0496 abc IPR003439 - ABC transporter-like RAF_ORF0496 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0496 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0496 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0496 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0497 major IPR011701 - Major facilitator superfamily RAF_ORF0497 major IPR020846 - Major facilitator superfamily domain RAF_ORF0499 beta-barrel IPR009009 - RlpA-like double-psi beta-barrel domain RAF_ORF0502 permease IPR004923 - Iron permease FTR1/Fip1/EfeU RAF_ORF0502 iron IPR004923 - Iron permease FTR1/Fip1/EfeU RAF_ORF0506 fold IPR012336 - Thioredoxin-like fold RAF_ORF0507 peptidase IPR002142 - Peptidase S49 RAF_ORF0508 triphosphate IPR008180 - Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase RAF_ORF0508 triphosphate IPR008180 - Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase RAF_ORF0508 deaminase IPR008180 - Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase RAF_ORF0512 endonuclease IPR011335 - Restriction endonuclease type II-like RAF_ORF0512 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0512 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0512 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0512 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0514 peptidase IPR011697 - Peptidase C26 RAF_ORF0515 oxidase IPR000883 - Cytochrome c oxidase subunit I RAF_ORF0515 cytochrome IPR000883 - Cytochrome c oxidase subunit I RAF_ORF0515 cytochrome IPR023616 - Cytochrome c oxidase, subunit I domain RAF_ORF0518 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0518 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0518 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0518 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0523 cell IPR001182 - Cell cycle protein FtsW/RodA RAF_ORF0541 radical IPR007197 - Radical SAM RAF_ORF0541 radical IPR023970 - Methylthiotransferase/radical SAM-type protein RAF_ORF0542 alpha IPR004529 - Phenylalanyl-tRNA synthetase, class IIc, alpha subunit RAF_ORF0542 synthetase IPR004529 - Phenylalanyl-tRNA synthetase, class IIc, alpha subunit RAF_ORF0542 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0542 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF0543 putative IPR009061 - DNA binding domain, putative RAF_ORF0543 dna-binding IPR009061 - DNA binding domain, putative RAF_ORF0546 synthetase IPR009008 - Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_ORF0546 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0546 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0546 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0546 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0546 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0546 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0547 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF0551 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0551 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0551 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0551 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0551 histidine IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0551 c-terminal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0551 signal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0552 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0553 aminotransferase IPR001544 - Aminotransferase, class IV RAF_ORF0554 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0556 fold IPR012336 - Thioredoxin-like fold RAF_ORF0558 fold IPR011761 - ATP-grasp fold RAF_ORF0558 subdomain IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0558 fold IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0559 domain-like IPR029060 - PIN domain-like RAF_ORF0563 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0563 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0563 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0563 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0567 alpha IPR015946 - K homology domain-like, alpha/beta RAF_ORF0567 domain-like IPR015946 - K homology domain-like, alpha/beta RAF_ORF0567 homology IPR015946 - K homology domain-like, alpha/beta RAF_ORF0567 beta IPR015946 - K homology domain-like, alpha/beta RAF_ORF0571 kinase IPR002504 - Inorganic polyphosphate/ATP-NAD kinase RAF_ORF0572 ribonuclease IPR004613 - Ribonuclease J RAF_ORF0573 dehydrogenase IPR006168 - Glycerol-3-phosphate dehydrogenase, NAD-dependent RAF_ORF0573 c-terminal IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF0573 dehydrogenase IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF0573 6-phosphogluconate IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF0573 domain-like IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF0573 6-phosphogluconate IPR013328 - Dehydrogenase, multihelical RAF_ORF0573 dehydrogenase IPR013328 - Dehydrogenase, multihelical RAF_ORF0574 membrane IPR004776 - Auxin efflux carrier RAF_ORF0574 transport IPR004776 - Auxin efflux carrier RAF_ORF0575 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0575 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0575 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0575 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0576 oxidoreductase IPR000103 - Pyridine nucleotide-disulphide oxidoreductase, class-II RAF_ORF0578 dehydrogenase IPR016161 - Aldehyde/histidinol dehydrogenase RAF_ORF0580 helicase IPR000212 - DNA helicase, UvrD/REP type RAF_ORF0580 dna IPR000212 - DNA helicase, UvrD/REP type RAF_ORF0580 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0580 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0580 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0580 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0584 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0584 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0584 protease IPR027065 - Lon protease RAF_ORF0584 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0584 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0584 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0584 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0588 ribosomal IPR003489 - Ribosomal protein S30Ae/sigma 54 modulation protein RAF_ORF0588 sigma IPR003489 - Ribosomal protein S30Ae/sigma 54 modulation protein RAF_ORF0591 oxidoreductase IPR000103 - Pyridine nucleotide-disulphide oxidoreductase, class-II RAF_ORF0596 reductase IPR000788 - Ribonucleotide reductase large subunit, C-terminal RAF_ORF0596 c-terminal IPR000788 - Ribonucleotide reductase large subunit, C-terminal RAF_ORF0596 large IPR000788 - Ribonucleotide reductase large subunit, C-terminal RAF_ORF0598 reductase IPR000358 - Ribonucleotide reductase small subunit RAF_ORF0598 small IPR000358 - Ribonucleotide reductase small subunit RAF_ORF0602 trna IPR018022 - tRNA delta(2)-isopentenylpyrophosphate transferase RAF_ORF0602 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0602 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0602 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0602 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0604 abc IPR003439 - ABC transporter-like RAF_ORF0604 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0604 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0604 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0604 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0606 assembly IPR010664 - Lipopolysaccharide assembly, LptC-related RAF_ORF0608 homology IPR004087 - K Homology domain RAF_ORF0608 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0608 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0609 ribosomal IPR000589 - Ribosomal protein S15 RAF_ORF0609 rna-binding IPR009068 - S15/NS1, RNA-binding RAF_ORF0610 synthase IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0610 pseudouridine IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0610 catalytic IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0613 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF0614 factor IPR017039 - Virulence factor BrkB RAF_ORF0614 virulence IPR017039 - Virulence factor BrkB RAF_ORF0615 kinase IPR014746 - Glutamine synthetase/guanido kinase, catalytic domain RAF_ORF0615 synthetase IPR014746 - Glutamine synthetase/guanido kinase, catalytic domain RAF_ORF0615 catalytic IPR014746 - Glutamine synthetase/guanido kinase, catalytic domain RAF_ORF0619 domain-like IPR029060 - PIN domain-like RAF_ORF0622 enzyme IPR008279 - PEP-utilising enzyme, mobile domain RAF_ORF0622 subdomain IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0622 fold IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0622 pyruvate IPR015813 - Pyruvate/Phosphoenolpyruvate kinase-like domain RAF_ORF0622 kinase-like IPR015813 - Pyruvate/Phosphoenolpyruvate kinase-like domain RAF_ORF0623 c-terminal-like IPR010987 - Glutathione S-transferase, C-terminal-like RAF_ORF0623 fold IPR012336 - Thioredoxin-like fold RAF_ORF0626 synthetase IPR001645 - Folylpolyglutamate synthetase RAF_ORF0640 rna-binding IPR014720 - Double-stranded RNA-binding domain RAF_ORF0644 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0645 atpase IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF0645 beta IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF0645 complex IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF0645 alpha IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF0645 shock IPR011129 - Cold shock protein RAF_ORF0645 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0645 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0645 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0645 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0646 peptidase IPR002142 - Peptidase S49 RAF_ORF0647 dna-binding IPR000119 - Histone-like bacterial DNA-binding protein RAF_ORF0650 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0650 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0650 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0650 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0659 methyltransferase IPR012327 - D12 class N6 adenine-specific DNA methyltransferase RAF_ORF0659 dna IPR012327 - D12 class N6 adenine-specific DNA methyltransferase RAF_ORF0659 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0662 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0662 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0662 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0662 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0664 protease IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAF_ORF0665 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0666 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0667 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0668 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0674 regulator IPR000944 - Transcription regulator Rrf2-like RAF_ORF0674 transcription IPR000944 - Transcription regulator Rrf2-like RAF_ORF0674 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0675 transferase IPR015424 - Pyridoxal phosphate-dependent transferase RAF_ORF0676 transferase IPR015424 - Pyridoxal phosphate-dependent transferase RAF_ORF0680 acid IPR002293 - Amino acid/polyamine transporter I RAF_ORF0680 amino IPR002293 - Amino acid/polyamine transporter I RAF_ORF0680 transporter IPR002293 - Amino acid/polyamine transporter I RAF_ORF0681 peptidase IPR000994 - Peptidase M24, structural domain RAF_ORF0681 aminopeptidase IPR029149 - Creatinase/Aminopeptidase P/Spt16, N-terminal RAF_ORF0682 synthetase IPR000092 - Polyprenyl synthetase RAF_ORF0682 synthase IPR008949 - Terpenoid synthase RAF_ORF0688 major IPR011701 - Major facilitator superfamily RAF_ORF0688 major IPR020846 - Major facilitator superfamily domain RAF_ORF0692 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0693 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0693 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0693 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0693 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF0694 antitoxin IPR007337 - RelB antitoxin/Antitoxin DinJ RAF_ORF0694 antitoxin IPR007337 - RelB antitoxin/Antitoxin DinJ RAF_ORF0697 aminoacyl-trna IPR002305 - Aminoacyl-tRNA synthetase, class Ic RAF_ORF0697 synthetase IPR002305 - Aminoacyl-tRNA synthetase, class Ic RAF_ORF0697 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0697 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0697 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0697 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0701 symporter IPR001734 - Sodium/solute symporter RAF_ORF0701 solute IPR001734 - Sodium/solute symporter RAF_ORF0701 sodium IPR001734 - Sodium/solute symporter RAF_ORF0706 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF0708 reductase IPR016156 - FAD/NAD-linked reductase, dimerisation domain RAF_ORF0709 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0711 methyltransferase IPR012327 - D12 class N6 adenine-specific DNA methyltransferase RAF_ORF0711 dna IPR012327 - D12 class N6 adenine-specific DNA methyltransferase RAF_ORF0711 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0717 regulator IPR002876 - Transcriptional regulator TACO1-like RAF_ORF0717 transcriptional IPR002876 - Transcriptional regulator TACO1-like RAF_ORF0717 domain-like IPR017856 - Integrase, N-terminal zinc-binding domain-like RAF_ORF0722 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0728 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0732 helicase IPR014001 - Helicase, superfamily 1/2, ATP-binding domain RAF_ORF0732 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0732 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0732 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0732 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0733 prenyltransferase IPR004507 - Decarboxylase UbiX/Pad1 RAF_ORF0734 c-terminal IPR016136 - DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_ORF0734 dna IPR016136 - DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_ORF0734 dna IPR016136 - DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_ORF0734 helicase IPR016136 - DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_ORF0734 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0734 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0734 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0734 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0736 synthase IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0736 pseudouridine IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0736 catalytic IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF0738 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0739 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0739 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0739 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0739 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0739 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0739 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0744 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0744 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0744 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0744 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0744 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0744 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0745 homology IPR004087 - K Homology domain RAF_ORF0745 alpha IPR015946 - K homology domain-like, alpha/beta RAF_ORF0745 domain-like IPR015946 - K homology domain-like, alpha/beta RAF_ORF0745 homology IPR015946 - K homology domain-like, alpha/beta RAF_ORF0745 beta IPR015946 - K homology domain-like, alpha/beta RAF_ORF0748 regulator IPR000944 - Transcription regulator Rrf2-like RAF_ORF0748 transcription IPR000944 - Transcription regulator Rrf2-like RAF_ORF0748 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0749 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0750 aminoacyl-trna IPR002305 - Aminoacyl-tRNA synthetase, class Ic RAF_ORF0750 synthetase IPR002305 - Aminoacyl-tRNA synthetase, class Ic RAF_ORF0750 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0750 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0750 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0750 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0759 prenyltransferase IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAF_ORF0771 hydroxylase IPR010971 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 RAF_ORF0771 biosynthesis IPR010971 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/UbiI/COQ6 RAF_ORF0773 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0773 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0773 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0773 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0780 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0783 symporter IPR001734 - Sodium/solute symporter RAF_ORF0783 solute IPR001734 - Sodium/solute symporter RAF_ORF0783 sodium IPR001734 - Sodium/solute symporter RAF_ORF0784 nuclease IPR000305 - GIY-YIG nuclease superfamily RAF_ORF0786 fold IPR016024 - Armadillo-type fold RAF_ORF0789 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF0796 translocase IPR000185 - Protein translocase subunit SecA RAF_ORF0796 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0796 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0796 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0796 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0798 carrier IPR002582 - Holo-[acyl carrier protein] synthase RAF_ORF0798 synthase IPR002582 - Holo-[acyl carrier protein] synthase RAF_ORF0798 transferase IPR008278 - 4'-phosphopantetheinyl transferase superfamily RAF_ORF0799 polymerase IPR006110 - RNA polymerase, subunit omega/K/RPB6 RAF_ORF0799 rna IPR006110 - RNA polymerase, subunit omega/K/RPB6 RAF_ORF0800 phosphate IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0800 transferase IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0800 rna IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0800 cyclase IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0800 alpha IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0800 beta IPR013792 - RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_ORF0801 topoisomerase IPR001241 - DNA topoisomerase, type IIA RAF_ORF0801 iia IPR001241 - DNA topoisomerase, type IIA RAF_ORF0801 dna IPR001241 - DNA topoisomerase, type IIA RAF_ORF0801 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0801 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0801 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0801 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0801 dna IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0801 topoisomerase IPR013760 - DNA topoisomerase, type IIA-like domain RAF_ORF0801 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0801 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0802 hydrolase IPR006357 - HAD-superfamily hydrolase, subfamily IIA RAF_ORF0802 subfamily IPR006357 - HAD-superfamily hydrolase, subfamily IIA RAF_ORF0802 had-superfamily IPR006357 - HAD-superfamily hydrolase, subfamily IIA RAF_ORF0802 iia IPR006357 - HAD-superfamily hydrolase, subfamily IIA RAF_ORF0806 major IPR020846 - Major facilitator superfamily domain RAF_ORF0810 resistance IPR001036 - Acriflavin resistance protein RAF_ORF0810 archaeal IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0810 bacterial IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0810 membrane IPR022813 - Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_ORF0811 copper IPR003782 - Copper chaperone SCO1/SenC RAF_ORF0811 chaperone IPR003782 - Copper chaperone SCO1/SenC RAF_ORF0811 fold IPR012336 - Thioredoxin-like fold RAF_ORF0818 helicase IPR014001 - Helicase, superfamily 1/2, ATP-binding domain RAF_ORF0818 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0818 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0818 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0818 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0820 coenzyme IPR004165 - Coenzyme A transferase family I RAF_ORF0820 transferase IPR004165 - Coenzyme A transferase family I RAF_ORF0821 coenzyme IPR004165 - Coenzyme A transferase family I RAF_ORF0821 transferase IPR004165 - Coenzyme A transferase family I RAF_ORF0825 glycosyl IPR000715 - Glycosyl transferase, family 4 RAF_ORF0825 transferase IPR000715 - Glycosyl transferase, family 4 RAF_ORF0828 helicase IPR014001 - Helicase, superfamily 1/2, ATP-binding domain RAF_ORF0828 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0828 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0828 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0828 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0829 dehydrogenase IPR005631 - Flavinator of succinate dehydrogenase RAF_ORF0831 replication IPR010921 - Trp repressor/replication initiator RAF_ORF0831 repressor IPR010921 - Trp repressor/replication initiator RAF_ORF0831 replication IPR020591 - Chromosomal replication control, initiator DnaA-like RAF_ORF0831 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0831 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0831 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0831 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0835 acyl IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF0835 hydrolase IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF0835 acyl IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF0835 transferase IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF0841 binding IPR006073 - GTP binding domain RAF_ORF0841 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0841 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0841 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0841 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0842 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0844 synthetase IPR011035 - Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain RAF_ORF0844 ribosomal IPR011035 - Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain RAF_ORF0844 ribosomal IPR029751 - Ribosomal protein L25 RAF_ORF0845 radical IPR007197 - Radical SAM RAF_ORF0845 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF0845 synthase-like IPR024924 - 7-carboxy-7-deazaguanine synthase-like RAF_ORF0846 ribosomal IPR021137 - Ribosomal protein L35 RAF_ORF0849 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0849 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0852 transport IPR002523 - Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RAF_ORF0852 transporter IPR002523 - Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RAF_ORF0852 zinc IPR002523 - Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RAF_ORF0856 transmembrane IPR000515 - MetI-like domain RAF_ORF0856 transporter IPR000515 - MetI-like domain RAF_ORF0856 abc IPR000515 - MetI-like domain RAF_ORF0856 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0856 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0856 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0856 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF0856 histidine IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0856 c-terminal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0856 signal IPR004358 - Signal transduction histidine kinase-related protein, C-terminal RAF_ORF0859 ligase IPR002301 - Isoleucine-tRNA ligase RAF_ORF0859 synthetase IPR009008 - Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_ORF0859 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0859 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0859 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0859 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0859 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0859 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0861 helical IPR011990 - Tetratricopeptide-like helical domain RAF_ORF0862 fold IPR011761 - ATP-grasp fold RAF_ORF0862 subdomain IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0862 fold IPR013816 - ATP-grasp fold, subdomain 2 RAF_ORF0865 ligase IPR000873 - AMP-dependent synthetase/ligase RAF_ORF0865 synthetase IPR000873 - AMP-dependent synthetase/ligase RAF_ORF0865 major IPR011701 - Major facilitator superfamily RAF_ORF0865 major IPR020846 - Major facilitator superfamily domain RAF_ORF0868 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0869 synthetase IPR000924 - Glutamyl/glutaminyl-tRNA synthetase RAF_ORF0869 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0869 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0869 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0869 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0869 synthetase IPR020058 - Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_ORF0869 catalytic IPR020058 - Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_ORF0877 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0877 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0879 transmembrane IPR002549 - Uncharacterised protein family UPF0118 RAF_ORF0880 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0880 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0880 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0880 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0881 major IPR020846 - Major facilitator superfamily domain RAF_ORF0888 dna-directed IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain RAF_ORF0888 polymerase IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain RAF_ORF0888 rna IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain RAF_ORF0889 ribosomal IPR001971 - Ribosomal protein S11 RAF_ORF0890 ribosomal IPR001892 - Ribosomal protein S13 RAF_ORF0890 ribosomal IPR010979 - Ribosomal protein S13-like, H2TH RAF_ORF0891 kinase IPR000850 - Adenylate kinase/UMP-CMP kinase RAF_ORF0891 kinase IPR000850 - Adenylate kinase/UMP-CMP kinase RAF_ORF0891 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0891 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0891 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0891 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0895 ribosomal IPR000851 - Ribosomal protein S5 RAF_ORF0895 rna-binding IPR014720 - Double-stranded RNA-binding domain RAF_ORF0895 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0895 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF0896 ribosomal IPR005484 - Ribosomal protein L18/L5 RAF_ORF0897 ribosomal IPR000702 - Ribosomal protein L6 RAF_ORF0899 ribosomal IPR001209 - Ribosomal protein S14 RAF_ORF0900 ribosomal IPR002132 - Ribosomal protein L5 RAF_ORF0901 translation IPR008991 - Translation protein SH3-like domain RAF_ORF0901 ribosomal IPR014722 - Ribosomal protein L2 domain 2 RAF_ORF0902 ribosomal IPR000218 - Ribosomal protein L14b/L23e RAF_ORF0903 ribosomal IPR000266 - Ribosomal protein S17 RAF_ORF0906 homology IPR004087 - K Homology domain RAF_ORF0906 alpha IPR015946 - K homology domain-like, alpha/beta RAF_ORF0906 domain-like IPR015946 - K homology domain-like, alpha/beta RAF_ORF0906 homology IPR015946 - K homology domain-like, alpha/beta RAF_ORF0906 beta IPR015946 - K homology domain-like, alpha/beta RAF_ORF0907 ribosomal IPR001063 - Ribosomal protein L22/L17 RAF_ORF0908 ribosomal IPR002222 - Ribosomal protein S19/S15 RAF_ORF0909 ribosomal IPR002171 - Ribosomal protein L2 RAF_ORF0909 translation IPR008991 - Translation protein SH3-like domain RAF_ORF0909 ribosomal IPR014722 - Ribosomal protein L2 domain 2 RAF_ORF0910 ribosomal IPR013025 - Ribosomal protein L25/L23 RAF_ORF0911 ribosomal IPR002136 - Ribosomal protein L4/L1e RAF_ORF0912 ribosomal IPR000597 - Ribosomal protein L3 RAF_ORF0912 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0912 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0913 ribosomal IPR001848 - Ribosomal protein S10 RAF_ORF0914 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF0914 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF0914 elongation IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 initiation IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 factor IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 factor IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 translation IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 c-terminal IPR009001 - Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_ORF0914 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0914 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0914 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0914 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0915 rna IPR004441 - RNA methyltransferase TrmH family RAF_ORF0915 methyltransferase IPR004441 - RNA methyltransferase TrmH family RAF_ORF0915 beta IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0915 alpha IPR029028 - Alpha/beta knot methyltransferases RAF_ORF0915 ribosomal IPR029064 - 50S ribosomal protein L30e-like RAF_ORF0917 lyase IPR000362 - Fumarate lyase family RAF_ORF0919 domain-like IPR029060 - PIN domain-like RAF_ORF0920 tubulin IPR008280 - Tubulin/FtsZ, C-terminal RAF_ORF0920 c-terminal IPR008280 - Tubulin/FtsZ, C-terminal RAF_ORF0920 tubulin IPR018316 - Tubulin/FtsZ, 2-layer sandwich domain RAF_ORF0924 major IPR011701 - Major facilitator superfamily RAF_ORF0924 major IPR020846 - Major facilitator superfamily domain RAF_ORF0925 helicase IPR014001 - Helicase, superfamily 1/2, ATP-binding domain RAF_ORF0925 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0925 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0925 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0925 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0926 shock IPR011129 - Cold shock protein RAF_ORF0928 ribosomal IPR001737 - Ribosomal RNA adenine methylase transferase RAF_ORF0928 methyltransferase IPR001737 - Ribosomal RNA adenine methylase transferase RAF_ORF0928 rna IPR001737 - Ribosomal RNA adenine methylase transferase RAF_ORF0928 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0929 factor IPR027304 - Trigger factor/SurA domain RAF_ORF0934 endonuclease IPR005135 - Endonuclease/exonuclease/phosphatase RAF_ORF0934 phosphatase IPR005135 - Endonuclease/exonuclease/phosphatase RAF_ORF0936 binding IPR006073 - GTP binding domain RAF_ORF0936 alpha IPR015946 - K homology domain-like, alpha/beta RAF_ORF0936 domain-like IPR015946 - K homology domain-like, alpha/beta RAF_ORF0936 homology IPR015946 - K homology domain-like, alpha/beta RAF_ORF0936 beta IPR015946 - K homology domain-like, alpha/beta RAF_ORF0936 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0936 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0936 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0936 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0937 trna IPR011856 - tRNA endonuclease-like domain RAF_ORF0937 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0937 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0937 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0937 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0940 kinase-like IPR011009 - Protein kinase-like domain RAF_ORF0941 methyltransferase IPR004033 - UbiE/COQ5 methyltransferase RAF_ORF0941 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF0942 ribosomal IPR010979 - Ribosomal protein S13-like, H2TH RAF_ORF0951 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0951 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0951 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0951 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0951 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0951 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0951 synthetase IPR014758 - Methionyl-tRNA synthetase RAF_ORF0952 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0952 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0952 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0952 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0953 major IPR005828 - General substrate transporter RAF_ORF0953 major IPR020846 - Major facilitator superfamily domain RAF_ORF0954 prenyltransferase IPR000537 - UbiA prenyltransferase family RAF_ORF0957 ligase IPR002303 - Valine-tRNA ligase RAF_ORF0957 synthetase IPR009008 - Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_ORF0957 synthetase IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0957 aminoacyl-trna IPR009080 - Aminoacyl-tRNA synthetase, class 1a, anticodon-binding RAF_ORF0957 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0957 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0957 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0957 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0974 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0974 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0974 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0974 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0975 acyl-coa IPR016181 - Acyl-CoA N-acyltransferase RAF_ORF0976 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0976 alpha IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0976 fold IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0976 beta IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold RAF_ORF0978 abc IPR003439 - ABC transporter-like RAF_ORF0978 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0978 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0978 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0978 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0980 major IPR011701 - Major facilitator superfamily RAF_ORF0980 major IPR020846 - Major facilitator superfamily domain RAF_ORF0981 transmembrane IPR011925 - Lipoprotein releasing system, transmembrane protein, LolC/E family RAF_ORF0982 abc IPR003439 - ABC transporter-like RAF_ORF0982 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0982 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0982 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0982 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0985 biogenesis IPR003567 - Cytochrome c-type biogenesis protein RAF_ORF0985 cytochrome IPR003567 - Cytochrome c-type biogenesis protein RAF_ORF0985 c-type IPR003567 - Cytochrome c-type biogenesis protein RAF_ORF0992 hydrolase IPR017853 - Glycoside hydrolase, superfamily RAF_ORF0992 glycoside IPR017853 - Glycoside hydrolase, superfamily RAF_ORF0993 putative IPR009061 - DNA binding domain, putative RAF_ORF0993 dna-binding IPR009061 - DNA binding domain, putative RAF_ORF0994 dna-binding IPR000119 - Histone-like bacterial DNA-binding protein RAF_ORF0996 fold IPR012336 - Thioredoxin-like fold RAF_ORF0997 lipid IPR004960 - Bacterial lipid A biosynthesis acyltransferase RAF_ORF0997 bacterial IPR004960 - Bacterial lipid A biosynthesis acyltransferase RAF_ORF0997 biosynthesis IPR004960 - Bacterial lipid A biosynthesis acyltransferase RAF_ORF0998 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0998 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0998 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF0998 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1016 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF1019 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1019 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1019 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1019 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1020 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF1022 helicase IPR000212 - DNA helicase, UvrD/REP type RAF_ORF1022 dna IPR000212 - DNA helicase, UvrD/REP type RAF_ORF1022 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1022 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1022 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1022 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1024 acyl IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF1024 hydrolase IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF1024 acyl IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF1024 transferase IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase RAF_ORF1024 carrier IPR024925 - Malonyl CoA-acyl carrier protein transacylase RAF_ORF1038 domain-like IPR015797 - NUDIX hydrolase domain-like RAF_ORF1038 hydrolase IPR015797 - NUDIX hydrolase domain-like RAF_ORF1043 synthase IPR003698 - Lipoyl synthase RAF_ORF1043 radical IPR007197 - Radical SAM RAF_ORF1043 barrel IPR013785 - Aldolase-type TIM barrel RAF_ORF1044 serine IPR001085 - Serine hydroxymethyltransferase RAF_ORF1044 transferase IPR015424 - Pyridoxal phosphate-dependent transferase RAF_ORF1045 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1045 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1045 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1045 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1046 fold IPR012336 - Thioredoxin-like fold RAF_ORF1047 glycosylase IPR011257 - DNA glycosylase RAF_ORF1047 dna IPR011257 - DNA glycosylase RAF_ORF1054 protein-like IPR028082 - Periplasmic binding protein-like I RAF_ORF1054 periplasmic IPR028082 - Periplasmic binding protein-like I RAF_ORF1054 binding IPR028082 - Periplasmic binding protein-like I RAF_ORF1055 translocase IPR003369 - Sec-independent protein translocase protein TatA/B/E RAF_ORF1057 ribosomal IPR028909 - Ribosomal protein L21-like RAF_ORF1059 glutamate IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF1059 kinase IPR001048 - Aspartate/glutamate/uridylate kinase RAF_ORF1059 glutamate IPR001057 - Glutamate/acetylglutamate kinase RAF_ORF1059 kinase IPR001057 - Glutamate/acetylglutamate kinase RAF_ORF1060 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF1065 major IPR011701 - Major facilitator superfamily RAF_ORF1065 major IPR020846 - Major facilitator superfamily domain RAF_ORF1069 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF1070 dehydrogenase IPR028971 - NAD-glutamate dehydrogenase RAF_ORF1071 binding IPR006073 - GTP binding domain RAF_ORF1071 cleavage IPR027266 - GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RAF_ORF1071 glycine IPR027266 - GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RAF_ORF1071 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1071 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1071 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1071 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1077 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1077 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1077 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1077 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1078 dehydrogenase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF1078 reductase IPR002347 - Glucose/ribitol dehydrogenase RAF_ORF1079 binding IPR009081 - Acyl carrier protein-like RAF_ORF1081 abc IPR003439 - ABC transporter-like RAF_ORF1081 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1081 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1081 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1081 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1086 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1086 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1086 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1086 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1087 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF1090 permease IPR005495 - Permease YjgP/YjgQ, predicted RAF_ORF1094 ribosomal IPR011332 - Zinc-binding ribosomal protein RAF_ORF1096 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1096 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1096 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1096 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1097 polymerase IPR002298 - DNA polymerase A RAF_ORF1097 dna IPR002298 - DNA polymerase A RAF_ORF1097 ribonuclease IPR012337 - Ribonuclease H-like domain RAF_ORF1097 domain-like IPR029060 - PIN domain-like RAF_ORF1103 alpha IPR004805 - DNA polymerase III, alpha subunit RAF_ORF1103 polymerase IPR004805 - DNA polymerase III, alpha subunit RAF_ORF1103 dna IPR004805 - DNA polymerase III, alpha subunit RAF_ORF1103 polymerase IPR016195 - Polymerase/histidinol phosphatase-like RAF_ORF1103 phosphatase-like IPR016195 - Polymerase/histidinol phosphatase-like RAF_ORF1104 c-terminal IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF1104 dehydrogenase IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF1104 6-phosphogluconate IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF1104 domain-like IPR008927 - 6-phosphogluconate dehydrogenase, C-terminal-like RAF_ORF1104 dehydrogenase IPR017476 - UDP-glucose/GDP-mannose dehydrogenase RAF_ORF1106 major IPR011701 - Major facilitator superfamily RAF_ORF1106 major IPR020846 - Major facilitator superfamily domain RAF_ORF1107 periplasmic IPR002033 - Sec-independent periplasmic protein translocase TatC RAF_ORF1107 translocase IPR002033 - Sec-independent periplasmic protein translocase TatC RAF_ORF1108 synthetase IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF1108 aminoacyl-trna IPR006195 - Aminoacyl-tRNA synthetase, class II RAF_ORF1109 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1109 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1109 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1109 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1111 membrane IPR005496 - Integral membrane protein TerC RAF_ORF1111 integral IPR005496 - Integral membrane protein TerC RAF_ORF1112 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1112 enzyme IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1112 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1112 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1112 beta-barrel IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1112 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1113 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF1114 dna-binding IPR010982 - Lambda repressor-like, DNA-binding domain RAF_ORF1116 chain IPR001133 - NADH-ubiquinone oxidoreductase chain 4L/K RAF_ORF1116 oxidoreductase IPR001133 - NADH-ubiquinone oxidoreductase chain 4L/K RAF_ORF1118 oxidoreductase IPR003918 - NADH:ubiquinone oxidoreductase RAF_ORF1119 abc IPR003439 - ABC transporter-like RAF_ORF1119 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1119 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1119 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1119 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1120 chain IPR010226 - NADH-quinone oxidoreductase, chain I RAF_ORF1120 oxidoreductase IPR010226 - NADH-quinone oxidoreductase, chain I RAF_ORF1124 aconitase IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 beta IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 alpha IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 large IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 alpha IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 dehydratase IPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha RAF_ORF1124 dehydratase IPR015928 - Aconitase/3-isopropylmalate dehydratase, swivel RAF_ORF1124 aconitase IPR015928 - Aconitase/3-isopropylmalate dehydratase, swivel RAF_ORF1124 aconitase IPR015937 - Aconitase/isopropylmalate dehydratase RAF_ORF1124 dehydratase IPR015937 - Aconitase/isopropylmalate dehydratase RAF_ORF1125 epsilon IPR001469 - ATPase, F1 complex, delta/epsilon subunit RAF_ORF1125 synthase IPR001469 - ATPase, F1 complex, delta/epsilon subunit RAF_ORF1125 delta IPR001469 - ATPase, F1 complex, delta/epsilon subunit RAF_ORF1125 atp IPR001469 - ATPase, F1 complex, delta/epsilon subunit RAF_ORF1125 complex IPR001469 - ATPase, F1 complex, delta/epsilon subunit RAF_ORF1126 atpase IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1126 beta IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1126 complex IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1126 alpha IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1126 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1126 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1126 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1126 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1127 complex IPR000131 - ATPase, F1 complex, gamma subunit RAF_ORF1127 synthase IPR000131 - ATPase, F1 complex, gamma subunit RAF_ORF1127 atp IPR000131 - ATPase, F1 complex, gamma subunit RAF_ORF1127 gamma IPR000131 - ATPase, F1 complex, gamma subunit RAF_ORF1128 atpase IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1128 beta IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1128 complex IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1128 alpha IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_ORF1128 synthase IPR005294 - ATPase, F1 complex, alpha subunit RAF_ORF1128 alpha IPR005294 - ATPase, F1 complex, alpha subunit RAF_ORF1128 atp IPR005294 - ATPase, F1 complex, alpha subunit RAF_ORF1128 complex IPR005294 - ATPase, F1 complex, alpha subunit RAF_ORF1128 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1128 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1128 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1128 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1130 reductase IPR016156 - FAD/NAD-linked reductase, dimerisation domain RAF_ORF1131 dna-binding IPR002177 - DNA-binding protein Dps RAF_ORF1137 radical IPR007197 - Radical SAM RAF_ORF1137 radical IPR023970 - Methylthiotransferase/radical SAM-type protein RAF_ORF1142 cation IPR006153 - Cation/H+ exchanger RAF_ORF1142 exchanger IPR006153 - Cation/H+ exchanger RAF_ORF1157 triphosphate IPR029001 - Inosine triphosphate pyrophosphatase-like RAF_ORF1158 zinc IPR000962 - Zinc finger, DksA/TraR C4-type RAF_ORF1158 finger IPR000962 - Zinc finger, DksA/TraR C4-type RAF_ORF1159 core IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF1159 dna IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF1159 catalytic IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF1159 enzyme IPR011010 - DNA breaking-rejoining enzyme, catalytic core RAF_ORF1159 catalytic IPR013762 - Integrase-like, catalytic core RAF_ORF1164 barrel IPR012349 - FMN-binding split barrel RAF_ORF1166 reductase IPR002202 - Hydroxymethylglutaryl-CoA reductase, class I/II RAF_ORF1167 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1167 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1167 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1167 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1169 peptidase IPR000994 - Peptidase M24, structural domain RAF_ORF1169 peptidase IPR001714 - Peptidase M24, methionine aminopeptidase RAF_ORF1169 aminopeptidase IPR001714 - Peptidase M24, methionine aminopeptidase RAF_ORF1172 glycosyl IPR000715 - Glycosyl transferase, family 4 RAF_ORF1172 transferase IPR000715 - Glycosyl transferase, family 4 RAF_ORF1173 unknown IPR007922 - Protein of unknown function DUF721/UPF0232 RAF_ORF1174 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1174 enzyme IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1174 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1174 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1174 beta-barrel IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1174 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 enzyme IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 outer IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 beta-barrel IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1175 membrane IPR011250 - Outer membrane protein/outer membrane enzyme PagP , beta-barrel RAF_ORF1179 efflux IPR002524 - Cation efflux protein RAF_ORF1179 cation IPR002524 - Cation efflux protein RAF_ORF1182 abc IPR003439 - ABC transporter-like RAF_ORF1182 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1182 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1182 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1182 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1186 abc IPR003439 - ABC transporter-like RAF_ORF1186 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1186 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1186 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1186 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1187 dna-binding IPR000424 - Primosome PriB/single-strand DNA-binding RAF_ORF1188 beta IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1188 hydrolase IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1188 fold IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1188 alpha IPR029058 - Alpha/Beta hydrolase fold RAF_ORF1190 hydrolase IPR002196 - Glycoside hydrolase, family 24 RAF_ORF1190 glycoside IPR002196 - Glycoside hydrolase, family 24 RAF_ORF1191 unknown IPR003746 - Protein of unknown function DUF167 RAF_ORF1192 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1192 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1192 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1192 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1192 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF1192 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF1193 transferase IPR015424 - Pyridoxal phosphate-dependent transferase RAF_ORF1194 factor IPR027304 - Trigger factor/SurA domain RAF_ORF1195 binding IPR006073 - GTP binding domain RAF_ORF1195 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1195 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1195 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1195 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1196 synthase IPR002020 - Citrate synthase-like RAF_ORF1198 synthase IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1198 pseudouridine IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1198 catalytic IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1201 methyltransferase IPR003358 - tRNA (guanine-N-7) methyltransferase RAF_ORF1201 trna IPR003358 - tRNA (guanine-N-7) methyltransferase RAF_ORF1201 modification IPR004556 - Modification methylase HemK RAF_ORF1201 methyltransferase IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase-like RAF_ORF1202 synthase IPR017945 - DHBP synthase RibB-like alpha/beta domain RAF_ORF1202 alpha IPR017945 - DHBP synthase RibB-like alpha/beta domain RAF_ORF1202 beta IPR017945 - DHBP synthase RibB-like alpha/beta domain RAF_ORF1203 synthetase IPR006194 - Glycine-tRNA synthetase, heterodimeric RAF_ORF1204 synthetase IPR006194 - Glycine-tRNA synthetase, heterodimeric RAF_ORF1205 domain-like IPR029060 - PIN domain-like RAF_ORF1214 ligase IPR002318 - Alanine-tRNA ligase, class IIc RAF_ORF1214 beta-barrel IPR009000 - Translation protein, beta-barrel domain RAF_ORF1214 translation IPR009000 - Translation protein, beta-barrel domain RAF_ORF1215 synthase IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain RAF_ORF1215 pseudouridine IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain RAF_ORF1215 beta IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain RAF_ORF1215 alpha IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain RAF_ORF1215 synthase IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1215 pseudouridine IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1215 catalytic IPR020103 - Pseudouridine synthase, catalytic domain RAF_ORF1216 dna-binding IPR011991 - Winged helix-turn-helix DNA-binding domain RAF_ORF1216 factor IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF1216 sigma IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF1216 rna IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF1216 polymerase IPR013324 - RNA polymerase sigma factor, region 3/4 RAF_ORF1216 rna IPR014284 - RNA polymerase sigma-70 like domain RAF_ORF1216 polymerase IPR014284 - RNA polymerase sigma-70 like domain RAF_ORF1219 factor IPR023459 - Transcription elongation factor GreA/GreB family RAF_ORF1219 transcription IPR023459 - Transcription elongation factor GreA/GreB family RAF_ORF1219 elongation IPR023459 - Transcription elongation factor GreA/GreB family RAF_ORF1222 lipoprotein IPR004564 - Outer membrane lipoprotein carrier protein LolA-like RAF_ORF1222 carrier IPR004564 - Outer membrane lipoprotein carrier protein LolA-like RAF_ORF1222 membrane IPR004564 - Outer membrane lipoprotein carrier protein LolA-like RAF_ORF1222 outer IPR004564 - Outer membrane lipoprotein carrier protein LolA-like RAF_ORF1223 polymerase IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 delta IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 complex IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 gamma IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 dna IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 delta IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 c-terminal IPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_ORF1223 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1223 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1223 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1223 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1225 peptidase IPR021109 - Aspartic peptidase domain RAF_ORF1227 abc IPR003439 - ABC transporter-like RAF_ORF1227 nucleoside IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1227 hydrolase IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1227 triphosphate IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1227 containing IPR027417 - P-loop containing nucleoside triphosphate hydrolase RAF_ORF1227 acid IPR030679 - RAF_ORF1227|glnQ|YP_002845738.1|GeneID:7815497 RAF_ORF1227 atpase IPR030679 - RAF_ORF1227|glnQ|YP_002845738.1|GeneID:7815497 RAF_ORF1227 component IPR030679 - RAF_ORF1227|glnQ|YP_002845738.1|GeneID:7815497 RAF_ORF1227 transport IPR030679 - RAF_ORF1227|glnQ|YP_002845738.1|GeneID:7815497 RAF_ORF1227 amino IPR030679 - RAF_ORF1227|glnQ|YP_002845738.1|GeneID:7815497 RAF_ORF1229 phosphatase IPR000326 - Phosphatidic acid phosphatase type 2/haloperoxidase RAF_ORF1229 acid IPR000326 - Phosphatidic acid phosphatase type 2/haloperoxidase RAF_ORF1230 antitoxin IPR007337 - RelB antitoxin/Antitoxin DinJ RAF_ORF1230 antitoxin IPR007337 - RelB antitoxin/Antitoxin DinJ RAF_ORF1231 toxin IPR007712 - Toxin-antitoxin system, RelE/ParE toxin family RAF_ORF1232 permease IPR005495 - Permease YjgP/YjgQ, predicted RAF_ORF1234 peptidase IPR002933 - Peptidase M20 RAF_ORF1244 amidase IPR002502 - N-acetylmuramoyl-L-alanine amidase domain RAF_ORF1245 ribosomal IPR000307 - Ribosomal protein S16 RAF_ORF1246 ribosomal IPR011332 - Zinc-binding ribosomal protein RAF_ORF1247 dna IPR002099 - DNA mismatch repair protein family RAF_ORF1247 repair IPR002099 - DNA mismatch repair protein family RAF_ORF1247 atpase IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1247 histidine IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1247 kinase-like IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1247 c-terminal IPR003594 - Histidine kinase-like ATPase, C-terminal domain RAF_ORF1247 fold IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF1247 ribosomal IPR020568 - Ribosomal protein S5 domain 2-type fold RAF_ORF1253 major IPR011701 - Major facilitator superfamily RAF_ORF1253 major IPR020846 - Major facilitator superfamily domain RAF_ORF1257 uncharacterised IPR005265 - Uncharacterised protein family UPF0093 RAF_ORF1259 decarboxylase IPR000257 - Uroporphyrinogen decarboxylase (URO-D)