RAF_ORF0002	SSF52833	Thioredoxin-like
RAF_ORF0003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0005	SSF51971	Nucleotide-binding domain
RAF_ORF0005	SSF63380	Riboflavin synthase domain-like
RAF_ORF0006	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
RAF_ORF0007	SSF47598	Ribbon-helix-helix
RAF_ORF0008	SSF51161	Trimeric LpxA-like enzymes
RAF_ORF0009	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RAF_ORF0010	SSF51161	Trimeric LpxA-like enzymes
RAF_ORF0011	SSF51395	FMN-linked oxidoreductases
RAF_ORF0012	SSF88713	Glycoside hydrolase/deacetylase
RAF_ORF0013	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0014	SSF53807	"Helical backbone" metal receptor
RAF_ORF0015	SSF81301	Nucleotidyltransferase
RAF_ORF0015	SSF81891	Poly A polymerase C-terminal region-like
RAF_ORF0019	SSF103515	Autotransporter
RAF_ORF0021	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0024	SSF81333	F1F0 ATP synthase subunit C
RAF_ORF0025	SSF81336	F1F0 ATP synthase subunit A
RAF_ORF0027	SSF52833	Thioredoxin-like
RAF_ORF0028	SSF141259	CarD-like
RAF_ORF0029	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0031	SSF53597	Dihydrofolate reductase-like
RAF_ORF0040	SSF52833	Thioredoxin-like
RAF_ORF0041	SSF143456	VC0467-like
RAF_ORF0048	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0052	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0052	SSF81923	Double Clp-N motif
RAF_ORF0054	SSF53067	Actin-like ATPase domain
RAF_ORF0056	SSF46894	C-terminal effector domain of the bipartite response regulators
RAF_ORF0057	SSF54995	Ribosomal protein S6
RAF_ORF0058	SSF46911	Ribosomal protein S18
RAF_ORF0059	SSF55653	Ribosomal protein L9 C-domain
RAF_ORF0059	SSF55658	L9 N-domain-like
RAF_ORF0060	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_ORF0061	SSF140990	FtsH protease domain-like
RAF_ORF0061	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0062	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0063	SSF46548	alpha-helical ferredoxin
RAF_ORF0063	SSF54292	2Fe-2S ferredoxin-like
RAF_ORF0065	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0067	SSF50182	Sm-like ribonucleoproteins
RAF_ORF0071	SSF53056	beta-carbonic anhydrase, cab
RAF_ORF0073	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0075	SSF56420	Peptide deformylase
RAF_ORF0076	SSF103473	MFS general substrate transporter
RAF_ORF0077	SSF103473	MFS general substrate transporter
RAF_ORF0078	SSF54919	Nucleoside diphosphate kinase, NDK
RAF_ORF0079	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0080	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0082	SSF109709	KorB DNA-binding domain-like
RAF_ORF0082	SSF110849	ParB/Sulfiredoxin
RAF_ORF0083	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0085	SSF51569	Aldolase
RAF_ORF0087	SSF89360	HesB-like domain
RAF_ORF0088	SSF109604	HD-domain/PDEase-like
RAF_ORF0089	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0089	SSF52374	Nucleotidylyl transferase
RAF_ORF0089	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
RAF_ORF0090	SSF110997	Sporulation related repeat
RAF_ORF0092	SSF101904	GyrA/ParC C-terminal domain-like
RAF_ORF0092	SSF56719	Type II DNA topoisomerase
RAF_ORF0094	SSF56935	Porins
RAF_ORF0095	SSF51283	dUTPase-like
RAF_ORF0096	SSF54611	SecB-like
RAF_ORF0097	SSF52172	CheY-like
RAF_ORF0098	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_ORF0100	SSF52467	DHS-like NAD/FAD-binding domain
RAF_ORF0101	SSF56925	OMPA-like
RAF_ORF0102	SSF103481	Multidrug resistance efflux transporter EmrE
RAF_ORF0103	SSF103473	MFS general substrate transporter
RAF_ORF0105	SSF101447	Formin homology 2 domain (FH2 domain)
RAF_ORF0105	SSF103515	Autotransporter
RAF_ORF0106	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0106	SSF52374	Nucleotidylyl transferase
RAF_ORF0107	SSF52313	Ribosomal protein S2
RAF_ORF0108	SSF46934	UBA-like
RAF_ORF0108	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
RAF_ORF0110	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0112	SSF53383	PLP-dependent transferases
RAF_ORF0113	SSF48452	TPR-like
RAF_ORF0113	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0118	SSF50621	Alanine racemase C-terminal domain-like
RAF_ORF0118	SSF51419	PLP-binding barrel
RAF_ORF0120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0123	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RAF_ORF0124	SSF143800	L28p-like
RAF_ORF0125	SSF143800	L28p-like
RAF_ORF0126	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0127	SSF53633	Carbamate kinase-like
RAF_ORF0129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0140	SSF75217	alpha/beta knot
RAF_ORF0141	SSF50104	Translation proteins SH3-like domain
RAF_ORF0143	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_ORF0144	SSF140490	Nqo1C-terminal domain-like
RAF_ORF0144	SSF142019	Nqo1 FMN-binding domain-like
RAF_ORF0144	SSF142984	Nqo1 middle domain-like
RAF_ORF0145	SSF51306	LexA/Signal peptidase
RAF_ORF0146	SSF54768	dsRNA-binding domain-like
RAF_ORF0146	SSF69065	RNase III domain-like
RAF_ORF0147	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0147	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_ORF0148	SSF53098	Ribonuclease H-like
RAF_ORF0149	SSF75217	alpha/beta knot
RAF_ORF0150	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RAF_ORF0151	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0152	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0153	SSF117892	Band 7/SPFH domain
RAF_ORF0154	SSF117892	Band 7/SPFH domain
RAF_ORF0155	SSF50156	PDZ domain-like
RAF_ORF0155	SSF50494	Trypsin-like serine proteases
RAF_ORF0156	SSF52821	Rhodanese/Cell cycle control phosphatase
RAF_ORF0157	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RAF_ORF0158	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RAF_ORF0159	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
RAF_ORF0159	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0159	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
RAF_ORF0160	SSF161098	MetI-like
RAF_ORF0161	SSF50249	Nucleic acid-binding proteins
RAF_ORF0162	SSF47973	Ribosomal protein S7
RAF_ORF0163	SSF50447	Translation proteins
RAF_ORF0163	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0163	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0163	SSF54980	EF-G C-terminal domain-like
RAF_ORF0165	SSF50104	Translation proteins SH3-like domain
RAF_ORF0165	SSF82679	N-utilization substance G protein NusG, N-terminal domain
RAF_ORF0166	SSF46906	Ribosomal protein L11, C-terminal domain
RAF_ORF0166	SSF54747	Ribosomal L11/L12e N-terminal domain
RAF_ORF0167	SSF56808	Ribosomal protein L1
RAF_ORF0168	SSF160369	Ribosomal protein L10-like
RAF_ORF0169	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
RAF_ORF0169	SSF54736	ClpS-like
RAF_ORF0170	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RAF_ORF0171	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RAF_ORF0173	SSF52949	Macro domain-like
RAF_ORF0173	SSF53187	Zn-dependent exopeptidases
RAF_ORF0174	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0176	SSF50249	Nucleic acid-binding proteins
RAF_ORF0176	SSF55261	GAD domain-like
RAF_ORF0176	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0179	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0179	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RAF_ORF0180	SSF50475	FMN-binding split barrel
RAF_ORF0181	SSF53850	Periplasmic binding protein-like II
RAF_ORF0182	SSF55931	Glutamine synthetase/guanido kinase
RAF_ORF0182	SSF89095	GatB/YqeY motif
RAF_ORF0183	SSF75304	Amidase signature (AS) enzymes
RAF_ORF0184	SSF141000	Glu-tRNAGln amidotransferase C subunit
RAF_ORF0186	SSF55194	Ribosome recycling factor, RRF
RAF_ORF0187	SSF53633	Carbamate kinase-like
RAF_ORF0189	SSF103473	MFS general substrate transporter
RAF_ORF0194	SSF50156	PDZ domain-like
RAF_ORF0195	SSF48013	NusB-like
RAF_ORF0196	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0197	SSF53474	alpha/beta-Hydrolases
RAF_ORF0199	SSF55961	Bet v1-like
RAF_ORF0201	SSF75217	alpha/beta knot
RAF_ORF0201	SSF88697	PUA domain-like
RAF_ORF0203	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RAF_ORF0203	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RAF_ORF0203	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_ORF0204	SSF47729	IHF-like DNA-binding proteins
RAF_ORF0205	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0206	SSF47446	Signal peptide-binding domain
RAF_ORF0206	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0212	SSF102114	Radical SAM enzymes
RAF_ORF0213	SSF48403	Ankyrin repeat
RAF_ORF0215	SSF118215	Proton glutamate symport protein
RAF_ORF0216	SSF54913	GlnB-like
RAF_ORF0217	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_ORF0218	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RAF_ORF0218	SSF51230	Single hybrid motif
RAF_ORF0218	SSF52777	CoA-dependent acyltransferases
RAF_ORF0219	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_ORF0220	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_ORF0221	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0222	SSF48452	TPR-like
RAF_ORF0223	SSF140376	ChaB-like
RAF_ORF0224	SSF46565	Chaperone J-domain
RAF_ORF0224	SSF49493	HSP40/DnaJ peptide-binding domain
RAF_ORF0224	SSF57938	DnaJ/Hsp40 cysteine-rich domain
RAF_ORF0225	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RAF_ORF0225	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RAF_ORF0225	SSF53067	Actin-like ATPase domain
RAF_ORF0226	SSF50156	PDZ domain-like
RAF_ORF0226	SSF50494	Trypsin-like serine proteases
RAF_ORF0229	SSF48019	post-AAA+ oligomerization domain-like
RAF_ORF0229	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0230	SSF47240	Ferritin-like
RAF_ORF0231	SSF81452	Cytochrome c oxidase subunit III-like
RAF_ORF0234	SSF51161	Trimeric LpxA-like enzymes
RAF_ORF0237	SSF53955	Lysozyme-like
RAF_ORF0237	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF0241	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_ORF0242	SSF53850	Periplasmic binding protein-like II
RAF_ORF0244	SSF54292	2Fe-2S ferredoxin-like
RAF_ORF0245	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RAF_ORF0245	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RAF_ORF0245	SSF53067	Actin-like ATPase domain
RAF_ORF0246	SSF46565	Chaperone J-domain
RAF_ORF0246	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
RAF_ORF0247	SSF53098	Ribonuclease H-like
RAF_ORF0248	SSF46600	C-terminal UvrC-binding domain of UvrB
RAF_ORF0248	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0249	SSF52833	Thioredoxin-like
RAF_ORF0253	SSF101904	GyrA/ParC C-terminal domain-like
RAF_ORF0253	SSF56719	Type II DNA topoisomerase
RAF_ORF0257	SSF56420	Peptide deformylase
RAF_ORF0258	SSF50486	FMT C-terminal domain-like
RAF_ORF0258	SSF53328	Formyltransferase
RAF_ORF0262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0263	SSF111337	QueA-like
RAF_ORF0266	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0266	SSF90123	ABC transporter transmembrane region
RAF_ORF0270	SSF143120	YefM-like
RAF_ORF0271	SSF143011	RelE-like
RAF_ORF0272	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0273	SSF63411	LuxS/MPP-like metallohydrolase
RAF_ORF0274	SSF56104	SAICAR synthase-like
RAF_ORF0276	SSF52954	Class II aaRS ABD-related
RAF_ORF0276	SSF55186	ThrRS/AlaRS common domain
RAF_ORF0276	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0276	SSF81271	TGS-like
RAF_ORF0284	SSF56954	Outer membrane efflux proteins (OEP)
RAF_ORF0286	SSF48403	Ankyrin repeat
RAF_ORF0287	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0287	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF0287	SSF56719	Type II DNA topoisomerase
RAF_ORF0288	SSF50156	PDZ domain-like
RAF_ORF0288	SSF52096	ClpP/crotonase
RAF_ORF0289	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_ORF0289	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF0290	SSF48452	TPR-like
RAF_ORF0292	SSF50998	Quinoprotein alcohol dehydrogenase-like
RAF_ORF0293	SSF52161	Ribosomal protein L13
RAF_ORF0294	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0295	SSF55166	Hedgehog/DD-peptidase
RAF_ORF0297	SSF55811	Nudix
RAF_ORF0298	SSF52172	CheY-like
RAF_ORF0298	SSF55073	Nucleotide cyclase
RAF_ORF0299	SSF50104	Translation proteins SH3-like domain
RAF_ORF0299	SSF50249	Nucleic acid-binding proteins
RAF_ORF0300	SSF56655	Carbohydrate phosphatase
RAF_ORF0304	SSF111369	HlyD-like secretion proteins
RAF_ORF0306	SSF82657	BolA-like
RAF_ORF0307	SSF141868	EAL domain-like
RAF_ORF0308	SSF51984	MurCD N-terminal domain
RAF_ORF0308	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_ORF0308	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_ORF0309	SSF56176	FAD-binding/transporter-associated domain-like
RAF_ORF0309	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
RAF_ORF0310	SSF52440	PreATP-grasp domain
RAF_ORF0310	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_ORF0312	SSF53067	Actin-like ATPase domain
RAF_ORF0314	SSF46626	Cytochrome c
RAF_ORF0316	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0317	SSF103473	MFS general substrate transporter
RAF_ORF0318	SSF50249	Nucleic acid-binding proteins
RAF_ORF0320	SSF55120	Pseudouridine synthase
RAF_ORF0320	SSF55174	Alpha-L RNA-binding motif
RAF_ORF0321	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF0322	SSF56219	DNase I-like
RAF_ORF0323	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_ORF0324	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_ORF0324	SSF52922	TK C-terminal domain-like
RAF_ORF0325	SSF50447	Translation proteins
RAF_ORF0325	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0325	SSF54980	EF-G C-terminal domain-like
RAF_ORF0326	SSF111384	OmpH-like
RAF_ORF0327	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RAF_ORF0332	SSF50022	ISP domain
RAF_ORF0333	SSF81342	Transmembrane di-heme cytochromes
RAF_ORF0333	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
RAF_ORF0334	SSF46626	Cytochrome c
RAF_ORF0334	SSF81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
RAF_ORF0337	SSF49764	HSP20-like chaperones
RAF_ORF0343	SSF75620	Release factor
RAF_ORF0344	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0344	SSF54980	EF-G C-terminal domain-like
RAF_ORF0345	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF0348	SSF48371	ARM repeat
RAF_ORF0349	SSF109604	HD-domain/PDEase-like
RAF_ORF0352	SSF50993	Peptidase/esterase 'gauge' domain
RAF_ORF0352	SSF53474	alpha/beta-Hydrolases
RAF_ORF0359	SSF54427	NTF2-like
RAF_ORF0361	SSF54427	NTF2-like
RAF_ORF0364	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0365	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0366	SSF53067	Actin-like ATPase domain
RAF_ORF0374	SSF56655	Carbohydrate phosphatase
RAF_ORF0375	SSF48334	DNA repair protein MutS, domain III
RAF_ORF0375	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0375	SSF53150	DNA repair protein MutS, domain II
RAF_ORF0375	SSF55271	DNA repair protein MutS, domain I
RAF_ORF0376	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
RAF_ORF0377	SSF51261	Duplicated hybrid motif
RAF_ORF0379	SSF69796	Thymidylate synthase-complementing protein Thy1
RAF_ORF0380	SSF52964	TolB, N-terminal domain
RAF_ORF0380	SSF69304	Tricorn protease N-terminal domain
RAF_ORF0381	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RAF_ORF0381	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RAF_ORF0382	SSF110111	Ctag/Cox11
RAF_ORF0383	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0384	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_ORF0386	SSF52954	Class II aaRS ABD-related
RAF_ORF0386	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0387	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0390	SSF48452	TPR-like
RAF_ORF0394	SSF74653	TolA/TonB C-terminal domain
RAF_ORF0395	SSF109604	HD-domain/PDEase-like
RAF_ORF0396	SSF103473	MFS general substrate transporter
RAF_ORF0398	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0398	SSF90123	ABC transporter transmembrane region
RAF_ORF0399	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0399	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RAF_ORF0400	SSF54197	HIT-like
RAF_ORF0402	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RAF_ORF0403	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0408	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0411	SSF55387	Frataxin/Nqo15-like
RAF_ORF0414	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_ORF0416	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_ORF0416	SSF52374	Nucleotidylyl transferase
RAF_ORF0417	SSF56712	Prokaryotic type I DNA topoisomerase
RAF_ORF0417	SSF57783	Zinc beta-ribbon
RAF_ORF0420	SSF52833	Thioredoxin-like
RAF_ORF0421	SSF117892	Band 7/SPFH domain
RAF_ORF0422	SSF53649	Alkaline phosphatase-like
RAF_ORF0423	SSF53098	Ribonuclease H-like
RAF_ORF0424	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF0425	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0426	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0427	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0428	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0429	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0430	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0431	SSF111369	HlyD-like secretion proteins
RAF_ORF0433	SSF53474	alpha/beta-Hydrolases
RAF_ORF0434	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0435	SSF55174	Alpha-L RNA-binding motif
RAF_ORF0438	SSF48439	Protein prenylyltransferase
RAF_ORF0440	SSF50346	PRC-barrel domain
RAF_ORF0440	SSF50447	Translation proteins
RAF_ORF0442	SSF116842	XseB-like
RAF_ORF0446	SSF50486	FMT C-terminal domain-like
RAF_ORF0448	SSF52833	Thioredoxin-like
RAF_ORF0449	SSF56762	HydB/Nqo4-like
RAF_ORF0450	SSF143243	Nqo5-like
RAF_ORF0451	SSF56770	HydA/Nqo6-like
RAF_ORF0459	SSF56349	DNA breaking-rejoining enzymes
RAF_ORF0462	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0463	SSF56317	Carbon-nitrogen hydrolase
RAF_ORF0464	SSF47090	PGBD-like
RAF_ORF0464	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RAF_ORF0465	SSF53822	Periplasmic binding protein-like I
RAF_ORF0467	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0471	SSF158442	DsbB-like
RAF_ORF0472	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_ORF0472	SSF52374	Nucleotidylyl transferase
RAF_ORF0474	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0474	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_ORF0474	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RAF_ORF0475	SSF88723	PIN domain-like
RAF_ORF0476	SSF89447	AbrB/MazE/MraZ-like
RAF_ORF0477	SSF103473	MFS general substrate transporter
RAF_ORF0481	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0481	SSF56327	LDH C-terminal domain-like
RAF_ORF0484	SSF52317	Class I glutamine amidotransferase-like
RAF_ORF0484	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0485	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0487	SSF55811	Nudix
RAF_ORF0488	SSF81442	Cytochrome c oxidase subunit I-like
RAF_ORF0489	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_ORF0490	SSF52954	Class II aaRS ABD-related
RAF_ORF0490	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0491	SSF140931	Fic-like
RAF_ORF0493	SSF46929	DNA helicase RuvA subunit, C-terminal domain
RAF_ORF0493	SSF47781	RuvA domain 2-like
RAF_ORF0493	SSF50249	Nucleic acid-binding proteins
RAF_ORF0495	SSF46785	"Winged helix" DNA-binding domain
RAF_ORF0495	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0496	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0496	SSF90123	ABC transporter transmembrane region
RAF_ORF0497	SSF103473	MFS general substrate transporter
RAF_ORF0498	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF0499	SSF50685	Barwin-like endoglucanases
RAF_ORF0503	SSF49503	Cupredoxins
RAF_ORF0504	SSF54534	FKBP-like
RAF_ORF0505	SSF49482	Aromatic compound dioxygenase
RAF_ORF0506	SSF52833	Thioredoxin-like
RAF_ORF0507	SSF52096	ClpP/crotonase
RAF_ORF0508	SSF51283	dUTPase-like
RAF_ORF0509	SSF48435	Bacterial muramidases
RAF_ORF0509	SSF53955	Lysozyme-like
RAF_ORF0511	SSF141986	LD-carboxypeptidase A C-terminal domain-like
RAF_ORF0511	SSF52317	Class I glutamine amidotransferase-like
RAF_ORF0512	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0512	SSF52980	Restriction endonuclease-like
RAF_ORF0514	SSF52317	Class I glutamine amidotransferase-like
RAF_ORF0515	SSF81442	Cytochrome c oxidase subunit I-like
RAF_ORF0516	SSF51161	Trimeric LpxA-like enzymes
RAF_ORF0517	SSF49503	Cupredoxins
RAF_ORF0517	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
RAF_ORF0518	SSF52374	Nucleotidylyl transferase
RAF_ORF0519	SSF51261	Duplicated hybrid motif
RAF_ORF0522	SSF51984	MurCD N-terminal domain
RAF_ORF0522	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_ORF0522	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_ORF0524	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0536	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_ORF0540	SSF54506	Diaminopimelate epimerase-like
RAF_ORF0541	SSF102114	Radical SAM enzymes
RAF_ORF0542	SSF46589	tRNA-binding arm
RAF_ORF0542	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0543	SSF46955	Putative DNA-binding domain
RAF_ORF0543	SSF50249	Nucleic acid-binding proteins
RAF_ORF0543	SSF54991	Anticodon-binding domain of PheRS
RAF_ORF0543	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0543	SSF56037	PheT/TilS domain
RAF_ORF0544	SSF55979	DNA clamp
RAF_ORF0546	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0546	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_ORF0546	SSF52374	Nucleotidylyl transferase
RAF_ORF0547	SSF53098	Ribonuclease H-like
RAF_ORF0550	SSF64005	Undecaprenyl diphosphate synthase
RAF_ORF0551	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_ORF0551	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF0552	SSF46894	C-terminal effector domain of the bipartite response regulators
RAF_ORF0552	SSF52172	CheY-like
RAF_ORF0553	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RAF_ORF0554	SSF51569	Aldolase
RAF_ORF0555	SSF74982	Small protein B (SmpB)
RAF_ORF0556	SSF52833	Thioredoxin-like
RAF_ORF0557	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0557	SSF52210	Succinyl-CoA synthetase domains
RAF_ORF0558	SSF52210	Succinyl-CoA synthetase domains
RAF_ORF0558	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_ORF0559	SSF88723	PIN domain-like
RAF_ORF0560	SSF89447	AbrB/MazE/MraZ-like
RAF_ORF0563	SSF53474	alpha/beta-Hydrolases
RAF_ORF0563	SSF82171	DPP6 N-terminal domain-like
RAF_ORF0564	SSF54427	NTF2-like
RAF_ORF0567	SSF89919	Ribosome-binding factor A, RbfA
RAF_ORF0570	SSF111304	Recombination protein RecR
RAF_ORF0571	SSF111331	NAD kinase/diacylglycerol kinase-like
RAF_ORF0572	SSF56281	Metallo-hydrolase/oxidoreductase
RAF_ORF0573	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RAF_ORF0573	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0575	SSF53474	alpha/beta-Hydrolases
RAF_ORF0576	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0578	SSF53720	ALDH-like
RAF_ORF0579	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0583	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RAF_ORF0584	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0584	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0584	SSF88697	PUA domain-like
RAF_ORF0588	SSF69754	Ribosome binding protein Y (YfiA homologue)
RAF_ORF0589	SSF51161	Trimeric LpxA-like enzymes
RAF_ORF0590	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF0590	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_ORF0591	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0596	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
RAF_ORF0596	SSF51998	PFL-like glycyl radical enzymes
RAF_ORF0598	SSF47240	Ferritin-like
RAF_ORF0599	SSF141571	Pentapeptide repeat-like
RAF_ORF0602	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0603	SSF53738	Phosphoglucomutase, first 3 domains
RAF_ORF0603	SSF55957	Phosphoglucomutase, C-terminal domain
RAF_ORF0604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0607	SSF53697	SIS domain
RAF_ORF0608	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
RAF_ORF0608	SSF50249	Nucleic acid-binding proteins
RAF_ORF0608	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0608	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
RAF_ORF0608	SSF55666	Ribonuclease PH domain 2-like
RAF_ORF0609	SSF47060	S15/NS1 RNA-binding domain
RAF_ORF0610	SSF55120	Pseudouridine synthase
RAF_ORF0613	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF0615	SSF55931	Glutamine synthetase/guanido kinase
RAF_ORF0616	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RAF_ORF0617	SSF56420	Peptide deformylase
RAF_ORF0618	SSF143120	YefM-like
RAF_ORF0619	SSF88723	PIN domain-like
RAF_ORF0620	SSF53639	AraD/HMP-PK domain-like
RAF_ORF0622	SSF51621	Phosphoenolpyruvate/pyruvate domain
RAF_ORF0622	SSF52009	Phosphohistidine domain
RAF_ORF0622	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_ORF0623	SSF47616	GST C-terminal domain-like
RAF_ORF0623	SSF52833	Thioredoxin-like
RAF_ORF0624	SSF52317	Class I glutamine amidotransferase-like
RAF_ORF0626	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_ORF0626	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_ORF0627	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
RAF_ORF0627	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
RAF_ORF0632	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF0638	SSF54364	Translation initiation factor IF3, N-terminal domain
RAF_ORF0638	SSF55200	Translation initiation factor IF3, C-terminal domain
RAF_ORF0639	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RAF_ORF0639	SSF51230	Single hybrid motif
RAF_ORF0639	SSF52777	CoA-dependent acyltransferases
RAF_ORF0640	SSF75620	Release factor
RAF_ORF0643	SSF64182	DHH phosphoesterases
RAF_ORF0644	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0645	SSF50249	Nucleic acid-binding proteins
RAF_ORF0645	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0645	SSF68912	Rho N-terminal domain-like
RAF_ORF0646	SSF52096	ClpP/crotonase
RAF_ORF0647	SSF47729	IHF-like DNA-binding proteins
RAF_ORF0650	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0652	SSF109604	HD-domain/PDEase-like
RAF_ORF0659	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0663	SSF50249	Nucleic acid-binding proteins
RAF_ORF0664	SSF52096	ClpP/crotonase
RAF_ORF0665	SSF51395	FMN-linked oxidoreductases
RAF_ORF0666	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_ORF0668	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_ORF0674	SSF46785	"Winged helix" DNA-binding domain
RAF_ORF0675	SSF53383	PLP-dependent transferases
RAF_ORF0676	SSF53383	PLP-dependent transferases
RAF_ORF0677	SSF82649	SufE/NifU
RAF_ORF0678	SSF89360	HesB-like domain
RAF_ORF0679	SSF54106	LysM domain
RAF_ORF0681	SSF53092	Creatinase/prolidase N-terminal domain
RAF_ORF0681	SSF55920	Creatinase/aminopeptidase
RAF_ORF0682	SSF48576	Terpenoid synthases
RAF_ORF0688	SSF103473	MFS general substrate transporter
RAF_ORF0690	SSF69618	HemD-like
RAF_ORF0693	SSF53474	alpha/beta-Hydrolases
RAF_ORF0696	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RAF_ORF0697	SSF52374	Nucleotidylyl transferase
RAF_ORF0699	SSF53850	Periplasmic binding protein-like II
RAF_ORF0699	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
RAF_ORF0700	SSF141986	LD-carboxypeptidase A C-terminal domain-like
RAF_ORF0700	SSF52317	Class I glutamine amidotransferase-like
RAF_ORF0704	SSF103025	Folate-binding domain
RAF_ORF0706	SSF47819	HRDC-like
RAF_ORF0706	SSF53098	Ribonuclease H-like
RAF_ORF0707	SSF100950	NagB/RpiA/CoA transferase-like
RAF_ORF0708	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0708	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RAF_ORF0709	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0711	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0714	SSF53955	Lysozyme-like
RAF_ORF0716	SSF57840	Ribosomal protein L36
RAF_ORF0717	SSF75625	YebC-like
RAF_ORF0718	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_ORF0721	SSF101386	all-alpha NTP pyrophosphatases
RAF_ORF0722	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_ORF0728	SSF51569	Aldolase
RAF_ORF0732	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0733	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
RAF_ORF0734	SSF48024	N-terminal domain of DnaB helicase
RAF_ORF0734	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0736	SSF55120	Pseudouridine synthase
RAF_ORF0736	SSF55174	Alpha-L RNA-binding motif
RAF_ORF0737	SSF141571	Pentapeptide repeat-like
RAF_ORF0738	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0739	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0739	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0741	SSF57863	ArfGap/RecO-like zinc finger
RAF_ORF0742	SSF53067	Actin-like ATPase domain
RAF_ORF0744	SSF50447	Translation proteins
RAF_ORF0744	SSF52156	Initiation factor IF2/eIF5b, domain 3
RAF_ORF0744	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0745	SSF47794	Rad51 N-terminal domain-like
RAF_ORF0745	SSF50249	Nucleic acid-binding proteins
RAF_ORF0745	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_ORF0745	SSF69705	Transcription factor NusA, N-terminal domain
RAF_ORF0746	SSF74942	YhbC-like, C-terminal domain
RAF_ORF0746	SSF75420	YhbC-like, N-terminal domain
RAF_ORF0748	SSF46785	"Winged helix" DNA-binding domain
RAF_ORF0749	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0749	SSF55174	Alpha-L RNA-binding motif
RAF_ORF0750	SSF52374	Nucleotidylyl transferase
RAF_ORF0750	SSF55174	Alpha-L RNA-binding motif
RAF_ORF0756	SSF52047	RNI-like
RAF_ORF0759	SSF48239	Terpenoid cyclases/Protein prenyltransferases
RAF_ORF0765	SSF53271	PRTase-like
RAF_ORF0766	SSF53271	PRTase-like
RAF_ORF0771	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF0773	SSF46689	Homeodomain-like
RAF_ORF0773	SSF52172	CheY-like
RAF_ORF0773	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0774	SSF141571	Pentapeptide repeat-like
RAF_ORF0776	SSF56519	Penicillin binding protein dimerisation domain
RAF_ORF0776	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF0778	SSF56519	Penicillin binding protein dimerisation domain
RAF_ORF0778	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF0780	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0780	SSF81799	Putative methyltransferase TM0872, insert domain
RAF_ORF0781	SSF89447	AbrB/MazE/MraZ-like
RAF_ORF0782	SSF48403	Ankyrin repeat
RAF_ORF0784	SSF46600	C-terminal UvrC-binding domain of UvrB
RAF_ORF0784	SSF47781	RuvA domain 2-like
RAF_ORF0784	SSF82771	GIY-YIG endonuclease
RAF_ORF0785	SSF110087	DR1885-like metal-binding protein
RAF_ORF0786	SSF48371	ARM repeat
RAF_ORF0789	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
RAF_ORF0789	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
RAF_ORF0796	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0796	SSF81767	Pre-protein crosslinking domain of SecA
RAF_ORF0796	SSF81886	Helical scaffold and wing domains of SecA
RAF_ORF0797	SSF54534	FKBP-like
RAF_ORF0798	SSF56214	4'-phosphopantetheinyl transferase
RAF_ORF0799	SSF63562	RPB6/omega subunit-like
RAF_ORF0800	SSF55205	EPT/RTPC-like
RAF_ORF0801	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0801	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF0801	SSF56719	Type II DNA topoisomerase
RAF_ORF0802	SSF56784	HAD-like
RAF_ORF0803	SSF158791	MgtE N-terminal domain-like
RAF_ORF0803	SSF161093	MgtE membrane domain-like
RAF_ORF0803	SSF54631	CBS-domain pair
RAF_ORF0805	SSF109604	HD-domain/PDEase-like
RAF_ORF0806	SSF103473	MFS general substrate transporter
RAF_ORF0810	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_ORF0811	SSF52833	Thioredoxin-like
RAF_ORF0813	SSF82093	Heme chaperone CcmE
RAF_ORF0814	SSF50324	Inorganic pyrophosphatase
RAF_ORF0818	SSF50249	Nucleic acid-binding proteins
RAF_ORF0818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0820	SSF100950	NagB/RpiA/CoA transferase-like
RAF_ORF0821	SSF100950	NagB/RpiA/CoA transferase-like
RAF_ORF0826	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_ORF0826	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_ORF0826	SSF63418	MurE/MurF N-terminal domain
RAF_ORF0827	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_ORF0827	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_ORF0827	SSF63418	MurE/MurF N-terminal domain
RAF_ORF0828	SSF141259	CarD-like
RAF_ORF0828	SSF143517	TRCF domain-like
RAF_ORF0828	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0829	SSF109910	YgfY-like
RAF_ORF0830	SSF52821	Rhodanese/Cell cycle control phosphatase
RAF_ORF0831	SSF48295	TrpR-like
RAF_ORF0831	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0835	SSF52151	FabD/lysophospholipase-like
RAF_ORF0841	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0841	SSF81271	TGS-like
RAF_ORF0842	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_ORF0843	SSF53178	Peptidyl-tRNA hydrolase-like
RAF_ORF0844	SSF50715	Ribosomal protein L25-like
RAF_ORF0845	SSF102114	Radical SAM enzymes
RAF_ORF0846	SSF143034	L35p-like
RAF_ORF0847	SSF74731	Ribosomal protein L20
RAF_ORF0849	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0850	SSF48403	Ankyrin repeat
RAF_ORF0852	SSF143865	CorA soluble domain-like
RAF_ORF0852	SSF144083	Magnesium transport protein CorA, transmembrane region
RAF_ORF0856	SSF158472	HAMP domain-like
RAF_ORF0856	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_ORF0856	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF0859	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0859	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_ORF0859	SSF52374	Nucleotidylyl transferase
RAF_ORF0861	SSF48452	TPR-like
RAF_ORF0862	SSF51230	Single hybrid motif
RAF_ORF0862	SSF51246	Rudiment single hybrid motif
RAF_ORF0862	SSF52440	PreATP-grasp domain
RAF_ORF0862	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_ORF0863	SSF52096	ClpP/crotonase
RAF_ORF0865	SSF103473	MFS general substrate transporter
RAF_ORF0865	SSF56801	Acetyl-CoA synthetase-like
RAF_ORF0865	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RAF_ORF0866	SSF159894	YgaC/TfoX-N like
RAF_ORF0867	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RAF_ORF0868	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0869	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_ORF0869	SSF52374	Nucleotidylyl transferase
RAF_ORF0871	SSF48592	GroEL equatorial domain-like
RAF_ORF0871	SSF52029	GroEL apical domain-like
RAF_ORF0871	SSF54849	GroEL-intermediate domain like
RAF_ORF0872	SSF50129	GroES-like
RAF_ORF0877	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0877	SSF55666	Ribonuclease PH domain 2-like
RAF_ORF0878	SSF51064	Head domain of nucleotide exchange factor GrpE
RAF_ORF0878	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
RAF_ORF0880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0881	SSF103473	MFS general substrate transporter
RAF_ORF0886	SSF46992	Ribosomal protein S20
RAF_ORF0887	SSF64263	Prokaryotic ribosomal protein L17
RAF_ORF0888	SSF47789	C-terminal domain of RNA polymerase alpha subunit
RAF_ORF0888	SSF55257	RBP11-like subunits of RNA polymerase
RAF_ORF0888	SSF56553	Insert subdomain of RNA polymerase alpha subunit
RAF_ORF0889	SSF53137	Translational machinery components
RAF_ORF0890	SSF46946	S13-like H2TH domain
RAF_ORF0891	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0892	SSF103491	Preprotein translocase SecY subunit
RAF_ORF0893	SSF52080	Ribosomal proteins L15p and L18e
RAF_ORF0894	SSF55129	Ribosomal protein L30p/L7e
RAF_ORF0895	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF0895	SSF54768	dsRNA-binding domain-like
RAF_ORF0896	SSF53137	Translational machinery components
RAF_ORF0897	SSF56053	Ribosomal protein L6
RAF_ORF0898	SSF56047	Ribosomal protein S8
RAF_ORF0899	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_ORF0900	SSF55282	RL5-like
RAF_ORF0901	SSF50104	Translation proteins SH3-like domain
RAF_ORF0902	SSF50193	Ribosomal protein L14
RAF_ORF0903	SSF50249	Nucleic acid-binding proteins
RAF_ORF0904	SSF46561	Ribosomal protein L29 (L29p)
RAF_ORF0905	SSF54686	Ribosomal protein L16p/L10e
RAF_ORF0906	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_ORF0906	SSF54821	Ribosomal protein S3 C-terminal domain
RAF_ORF0907	SSF54843	Ribosomal protein L22
RAF_ORF0908	SSF54570	Ribosomal protein S19
RAF_ORF0909	SSF50104	Translation proteins SH3-like domain
RAF_ORF0909	SSF50249	Nucleic acid-binding proteins
RAF_ORF0910	SSF54189	Ribosomal proteins S24e, L23 and L15e
RAF_ORF0911	SSF52166	Ribosomal protein L4
RAF_ORF0912	SSF50447	Translation proteins
RAF_ORF0913	SSF54999	Ribosomal protein S10
RAF_ORF0914	SSF50447	Translation proteins
RAF_ORF0914	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RAF_ORF0914	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0915	SSF55315	L30e-like
RAF_ORF0915	SSF75217	alpha/beta knot
RAF_ORF0917	SSF48557	L-aspartase-like
RAF_ORF0918	SSF143120	YefM-like
RAF_ORF0919	SSF88723	PIN domain-like
RAF_ORF0920	SSF52490	Tubulin nucleotide-binding domain-like
RAF_ORF0920	SSF55307	Tubulin C-terminal domain-like
RAF_ORF0922	SSF49772	Ecotin, trypsin inhibitor
RAF_ORF0923	SSF110836	Hypothetical protein SAV1430
RAF_ORF0923	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RAF_ORF0924	SSF103473	MFS general substrate transporter
RAF_ORF0925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0926	SSF50249	Nucleic acid-binding proteins
RAF_ORF0928	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0929	SSF109998	Triger factor/SurA peptide-binding domain-like
RAF_ORF0930	SSF56935	Porins
RAF_ORF0933	SSF53850	Periplasmic binding protein-like II
RAF_ORF0934	SSF56219	DNase I-like
RAF_ORF0936	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0937	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0940	SSF56112	Protein kinase-like (PK-like)
RAF_ORF0941	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF0942	SSF46946	S13-like H2TH domain
RAF_ORF0942	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_ORF0942	SSF81624	N-terminal domain of MutM-like DNA repair proteins
RAF_ORF0950	SSF51556	Metallo-dependent hydrolases
RAF_ORF0951	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0951	SSF52374	Nucleotidylyl transferase
RAF_ORF0952	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0953	SSF103473	MFS general substrate transporter
RAF_ORF0957	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_ORF0957	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_ORF0957	SSF52374	Nucleotidylyl transferase
RAF_ORF0974	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0974	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_ORF0975	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_ORF0976	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_ORF0977	SSF143100	TTHA1013/TTHA0281-like
RAF_ORF0977	SSF47598	Ribbon-helix-helix
RAF_ORF0978	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0978	SSF90123	ABC transporter transmembrane region
RAF_ORF0980	SSF103473	MFS general substrate transporter
RAF_ORF0982	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0983	SSF54001	Cysteine proteinases
RAF_ORF0984	SSF54631	CBS-domain pair
RAF_ORF0984	SSF56176	FAD-binding/transporter-associated domain-like
RAF_ORF0990	SSF103515	Autotransporter
RAF_ORF0991	SSF81301	Nucleotidyltransferase
RAF_ORF0992	SSF51445	(Trans)glycosidases
RAF_ORF0993	SSF46955	Putative DNA-binding domain
RAF_ORF0994	SSF47729	IHF-like DNA-binding proteins
RAF_ORF0995	SSF47162	Apolipoprotein
RAF_ORF0996	SSF52833	Thioredoxin-like
RAF_ORF0998	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF0999	SSF51261	Duplicated hybrid motif
RAF_ORF1003	SSF47781	RuvA domain 2-like
RAF_ORF1003	SSF50249	Nucleic acid-binding proteins
RAF_ORF1003	SSF52113	BRCT domain
RAF_ORF1003	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
RAF_ORF1004	SSF143120	YefM-like
RAF_ORF1005	SSF51713	tRNA-guanine transglycosylase
RAF_ORF1016	SSF53098	Ribonuclease H-like
RAF_ORF1017	SSF101738	SspB-like
RAF_ORF1019	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1020	SSF53098	Ribonuclease H-like
RAF_ORF1022	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1024	SSF52151	FabD/lysophospholipase-like
RAF_ORF1024	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
RAF_ORF1033	SSF53901	Thiolase-like
RAF_ORF1038	SSF55811	Nudix
RAF_ORF1039	SSF54631	CBS-domain pair
RAF_ORF1039	SSF56176	FAD-binding/transporter-associated domain-like
RAF_ORF1040	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_ORF1041	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
RAF_ORF1043	SSF102114	Radical SAM enzymes
RAF_ORF1044	SSF53383	PLP-dependent transferases
RAF_ORF1045	SSF53474	alpha/beta-Hydrolases
RAF_ORF1046	SSF52833	Thioredoxin-like
RAF_ORF1047	SSF48150	DNA-glycosylase
RAF_ORF1053	SSF53790	Tetrapyrrole methylase
RAF_ORF1054	SSF53822	Periplasmic binding protein-like I
RAF_ORF1056	SSF101307	YutG-like
RAF_ORF1057	SSF141091	L21p-like
RAF_ORF1058	SSF110324	Ribosomal L27 protein-like
RAF_ORF1059	SSF53633	Carbamate kinase-like
RAF_ORF1059	SSF55021	ACT-like
RAF_ORF1060	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF1065	SSF103473	MFS general substrate transporter
RAF_ORF1067	SSF102829	Cell division protein ZapA-like
RAF_ORF1070	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF1070	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_ORF1071	SSF116878	TrmE connector domain
RAF_ORF1071	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1077	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1077	SSF54752	RecA protein, C-terminal domain
RAF_ORF1078	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF1079	SSF47336	ACP-like
RAF_ORF1080	SSF53901	Thiolase-like
RAF_ORF1081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1086	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1087	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF1089	SSF53067	Actin-like ATPase domain
RAF_ORF1091	SSF103088	OmpA-like
RAF_ORF1093	SSF53901	Thiolase-like
RAF_ORF1094	SSF57829	Zn-binding ribosomal proteins
RAF_ORF1096	SSF47364	Domain of the SRP/SRP receptor G-proteins
RAF_ORF1096	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1097	SSF47807	5' to 3' exonuclease, C-terminal subdomain
RAF_ORF1097	SSF56672	DNA/RNA polymerases
RAF_ORF1097	SSF88723	PIN domain-like
RAF_ORF1103	SSF89550	PHP domain-like
RAF_ORF1104	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RAF_ORF1104	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF1104	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
RAF_ORF1106	SSF103473	MFS general substrate transporter
RAF_ORF1108	SSF46589	tRNA-binding arm
RAF_ORF1108	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF1109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1112	SSF56925	OMPA-like
RAF_ORF1113	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF1114	SSF47413	lambda repressor-like DNA-binding domains
RAF_ORF1119	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1120	SSF54862	4Fe-4S ferredoxins
RAF_ORF1122	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RAF_ORF1122	SSF54292	2Fe-2S ferredoxin-like
RAF_ORF1122	SSF54862	4Fe-4S ferredoxins
RAF_ORF1124	SSF52016	LeuD/IlvD-like
RAF_ORF1124	SSF53732	Aconitase iron-sulfur domain
RAF_ORF1125	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
RAF_ORF1126	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_ORF1126	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_ORF1126	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1127	SSF52943	ATP synthase (F1-ATPase), gamma subunit
RAF_ORF1128	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_ORF1128	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_ORF1128	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1129	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
RAF_ORF1130	SSF51905	FAD/NAD(P)-binding domain
RAF_ORF1130	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RAF_ORF1131	SSF47240	Ferritin-like
RAF_ORF1136	SSF53955	Lysozyme-like
RAF_ORF1136	SSF56601	beta-lactamase/transpeptidase-like
RAF_ORF1137	SSF102114	Radical SAM enzymes
RAF_ORF1142	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF1143	SSF81301	Nucleotidyltransferase
RAF_ORF1144	SSF82657	BolA-like
RAF_ORF1156	SSF50249	Nucleic acid-binding proteins
RAF_ORF1157	SSF52972	ITPase-like
RAF_ORF1158	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
RAF_ORF1158	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_ORF1159	SSF56349	DNA breaking-rejoining enzymes
RAF_ORF1161	SSF56024	Phospholipase D/nuclease
RAF_ORF1164	SSF143968	UbiD C-terminal domain-like
RAF_ORF1164	SSF50475	FMN-binding split barrel
RAF_ORF1166	SSF103515	Autotransporter
RAF_ORF1167	SSF46785	"Winged helix" DNA-binding domain
RAF_ORF1167	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1169	SSF55920	Creatinase/aminopeptidase
RAF_ORF1174	SSF56925	OMPA-like
RAF_ORF1175	SSF56925	OMPA-like
RAF_ORF1176	SSF54862	4Fe-4S ferredoxins
RAF_ORF1178	SSF53927	Cytidine deaminase-like
RAF_ORF1179	SSF160240	Cation efflux protein cytoplasmic domain-like
RAF_ORF1179	SSF161111	Cation efflux protein transmembrane domain-like
RAF_ORF1181	SSF49777	PEBP-like
RAF_ORF1182	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1186	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1187	SSF50249	Nucleic acid-binding proteins
RAF_ORF1188	SSF53474	alpha/beta-Hydrolases
RAF_ORF1190	SSF53955	Lysozyme-like
RAF_ORF1191	SSF69786	YggU-like
RAF_ORF1192	SSF110942	HSP90 C-terminal domain
RAF_ORF1192	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF1192	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF1193	SSF53383	PLP-dependent transferases
RAF_ORF1194	SSF102735	Trigger factor ribosome-binding domain
RAF_ORF1194	SSF109998	Triger factor/SurA peptide-binding domain-like
RAF_ORF1194	SSF54534	FKBP-like
RAF_ORF1195	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1195	SSF82051	Obg GTP-binding protein N-terminal domain
RAF_ORF1196	SSF48256	Citrate synthase
RAF_ORF1197	SSF52141	Uracil-DNA glycosylase-like
RAF_ORF1198	SSF55120	Pseudouridine synthase
RAF_ORF1198	SSF55174	Alpha-L RNA-binding motif
RAF_ORF1201	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_ORF1202	SSF55821	YrdC/RibB
RAF_ORF1203	SSF109604	HD-domain/PDEase-like
RAF_ORF1204	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF1205	SSF88723	PIN domain-like
RAF_ORF1206	SSF143120	YefM-like
RAF_ORF1214	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
RAF_ORF1214	SSF50447	Translation proteins
RAF_ORF1214	SSF55186	ThrRS/AlaRS common domain
RAF_ORF1214	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF1215	SSF55120	Pseudouridine synthase
RAF_ORF1216	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RAF_ORF1216	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RAF_ORF1217	SSF56731	DNA primase core
RAF_ORF1217	SSF57783	Zinc beta-ribbon
RAF_ORF1219	SSF46557	GreA transcript cleavage protein, N-terminal domain
RAF_ORF1219	SSF54534	FKBP-like
RAF_ORF1221	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_ORF1221	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RAF_ORF1222	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
RAF_ORF1223	SSF48019	post-AAA+ oligomerization domain-like
RAF_ORF1223	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1224	SSF82607	YbaB-like
RAF_ORF1225	SSF50630	Acid proteases
RAF_ORF1226	SSF143120	YefM-like
RAF_ORF1227	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_ORF1228	SSF56281	Metallo-hydrolase/oxidoreductase
RAF_ORF1229	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
RAF_ORF1231	SSF143011	RelE-like
RAF_ORF1233	SSF102400	DNA polymerase III chi subunit
RAF_ORF1234	SSF53187	Zn-dependent exopeptidases
RAF_ORF1234	SSF55031	Bacterial exopeptidase dimerisation domain
RAF_ORF1235	SSF116734	DNA methylase specificity domain
RAF_ORF1236	SSF116734	DNA methylase specificity domain
RAF_ORF1243	SSF55681	Class II aaRS and biotin synthetases
RAF_ORF1244	SSF47090	PGBD-like
RAF_ORF1244	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RAF_ORF1245	SSF54565	Ribosomal protein S16
RAF_ORF1246	SSF57829	Zn-binding ribosomal proteins
RAF_ORF1247	SSF118116	DNA mismatch repair protein MutL
RAF_ORF1247	SSF54211	Ribosomal protein S5 domain 2-like
RAF_ORF1247	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_ORF1253	SSF103473	MFS general substrate transporter
RAF_ORF1254	SSF102886	Coproporphyrinogen III oxidase
RAF_ORF1258	SSF53800	Chelatase
RAF_ORF1259	SSF51726	UROD/MetE-like