RPJ_00040	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RPJ_00040	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RPJ_00040	PWY-5989	stearate biosynthesis II (bacteria and plants)
RPJ_00040	PWY-5994	palmitate biosynthesis I (animals and fungi)
RPJ_00040	PWY-6113	superpathway of mycolate biosynthesis
RPJ_00040	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RPJ_00040	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RPJ_00040	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPJ_00040	PWYG-321	mycolate biosynthesis
RPJ_00215	PWY-3841	folate transformations II
RPJ_00215	PWY-6614	tetrahydrofolate biosynthesis
RPJ_00225	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPJ_00225	PWY-6148	tetrahydromethanopterin biosynthesis
RPJ_00225	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RPJ_00225	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RPJ_00425	PWY-3781	aerobic respiration I (cytochrome c)
RPJ_00425	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPJ_00425	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPJ_00425	PWY-5690	TCA cycle II (plants and fungi)
RPJ_00425	PWY-6728	methylaspartate cycle
RPJ_00425	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_00425	PWY-7254	TCA cycle VII (acetate-producers)
RPJ_00425	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPJ_00460	PWY-5269	cardiolipin biosynthesis II
RPJ_00460	PWY-5668	cardiolipin biosynthesis I
RPJ_00500	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_00500	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPJ_00500	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_00500	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_00500	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPJ_00500	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPJ_00500	PWY-7205	CMP phosphorylation
RPJ_00500	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPJ_00500	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_00500	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_00500	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_00500	PWY-7224	purine deoxyribonucleosides salvage
RPJ_00500	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_00500	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPJ_00535	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RPJ_00535	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RPJ_00590	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_00605	PWY-6700	queuosine biosynthesis
RPJ_00730	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPJ_00790	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPJ_00790	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPJ_00860	PWY-6829	tRNA methylation (yeast)
RPJ_00860	PWY-7285	methylwyosine biosynthesis
RPJ_00860	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RPJ_00960	PWY-3781	aerobic respiration I (cytochrome c)
RPJ_00960	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPJ_00960	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPJ_00960	PWY-5690	TCA cycle II (plants and fungi)
RPJ_00960	PWY-6728	methylaspartate cycle
RPJ_00960	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_00960	PWY-7254	TCA cycle VII (acetate-producers)
RPJ_00960	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPJ_01035	PWY-5988	wound-induced proteolysis I
RPJ_01035	PWY-6018	seed germination protein turnover
RPJ_01065	PWY-2941	L-lysine biosynthesis II
RPJ_01065	PWY-2942	L-lysine biosynthesis III
RPJ_01065	PWY-5097	L-lysine biosynthesis VI
RPJ_01085	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RPJ_01275	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPJ_01285	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPJ_01585	PWY-6700	queuosine biosynthesis
RPJ_01645	PWY-6123	inosine-5'-phosphate biosynthesis I
RPJ_01645	PWY-6124	inosine-5'-phosphate biosynthesis II
RPJ_01645	PWY-7234	inosine-5'-phosphate biosynthesis III
RPJ_01780	PWY-6454	vancomycin resistance I
RPJ_01780	PWY-6455	vancomycin resistance II
RPJ_01785	PWY-7158	L-phenylalanine degradation V
RPJ_01825	PWY-5669	phosphatidylethanolamine biosynthesis I
RPJ_01830	PWY-5669	phosphatidylethanolamine biosynthesis I
RPJ_01865	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_01865	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_01870	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_01870	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_01875	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_01875	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_01985	PWY-5913	TCA cycle VI (obligate autotrophs)
RPJ_01985	PWY-6549	L-glutamine biosynthesis III
RPJ_01985	PWY-6728	methylaspartate cycle
RPJ_01985	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_01985	PWY-7124	ethylene biosynthesis V (engineered)
RPJ_01985	PWY-7254	TCA cycle VII (acetate-producers)
RPJ_01985	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPJ_02010	PWY-3781	aerobic respiration I (cytochrome c)
RPJ_02010	PWY-6692	Fe(II) oxidation
RPJ_02010	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
RPJ_02010	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPJ_02270	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_02400	PWY-2941	L-lysine biosynthesis II
RPJ_02400	PWY-2942	L-lysine biosynthesis III
RPJ_02400	PWY-5097	L-lysine biosynthesis VI
RPJ_02400	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPJ_02400	PWY-6559	spermidine biosynthesis II
RPJ_02400	PWY-6562	norspermidine biosynthesis
RPJ_02400	PWY-7153	grixazone biosynthesis
RPJ_02400	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPJ_02505	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_02565	PWY-3821	galactose degradation III
RPJ_02565	PWY-6317	galactose degradation I (Leloir pathway)
RPJ_02565	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RPJ_02565	PWY-6527	stachyose degradation
RPJ_02565	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RPJ_02565	PWY-7344	UDP-D-galactose biosynthesis
RPJ_02570	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
RPJ_02765	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RPJ_02765	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RPJ_02765	PWY-5989	stearate biosynthesis II (bacteria and plants)
RPJ_02765	PWY-6113	superpathway of mycolate biosynthesis
RPJ_02765	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RPJ_02765	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RPJ_02765	PWY-7096	triclosan resistance
RPJ_02765	PWYG-321	mycolate biosynthesis
RPJ_02830	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_02840	PWY-1281	sulfoacetaldehyde degradation I
RPJ_02840	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RPJ_02840	PWY-5482	pyruvate fermentation to acetate II
RPJ_02840	PWY-5485	pyruvate fermentation to acetate IV
RPJ_02840	PWY-5497	purine nucleobases degradation II (anaerobic)
RPJ_02840	PWY-6637	sulfolactate degradation II
RPJ_02840	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPJ_02910	PWY-1622	formaldehyde assimilation I (serine pathway)
RPJ_02910	PWY-5392	reductive TCA cycle II
RPJ_02910	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPJ_02910	PWY-5690	TCA cycle II (plants and fungi)
RPJ_02910	PWY-5913	TCA cycle VI (obligate autotrophs)
RPJ_02910	PWY-6728	methylaspartate cycle
RPJ_02910	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_02910	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPJ_02910	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPJ_02935	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPJ_02935	PWY-7177	UTP and CTP dephosphorylation II
RPJ_02935	PWY-7185	UTP and CTP dephosphorylation I
RPJ_02940	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RPJ_02940	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RPJ_02955	PWY-3781	aerobic respiration I (cytochrome c)
RPJ_02955	PWY-4521	arsenite oxidation I (respiratory)
RPJ_02955	PWY-6692	Fe(II) oxidation
RPJ_02955	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPJ_02960	PWY-5663	tetrahydrobiopterin biosynthesis I
RPJ_02960	PWY-5664	tetrahydrobiopterin biosynthesis II
RPJ_02960	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPJ_02960	PWY-6703	preQ<sub>0</sub> biosynthesis
RPJ_02960	PWY-6983	tetrahydrobiopterin biosynthesis III
RPJ_02960	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RPJ_03060	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_03060	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_03060	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_03060	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RPJ_03095	PWY-3781	aerobic respiration I (cytochrome c)
RPJ_03095	PWY-4521	arsenite oxidation I (respiratory)
RPJ_03095	PWY-6692	Fe(II) oxidation
RPJ_03095	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPJ_03125	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_03125	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_03135	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPJ_03135	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPJ_03135	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPJ_03135	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPJ_03235	PWY-2941	L-lysine biosynthesis II
RPJ_03235	PWY-5097	L-lysine biosynthesis VI
RPJ_03310	PWY-5057	L-valine degradation II
RPJ_03310	PWY-5076	L-leucine degradation III
RPJ_03310	PWY-5078	L-isoleucine degradation II
RPJ_03310	PWY-5101	L-isoleucine biosynthesis II
RPJ_03310	PWY-5103	L-isoleucine biosynthesis III
RPJ_03310	PWY-5104	L-isoleucine biosynthesis IV
RPJ_03310	PWY-5108	L-isoleucine biosynthesis V
RPJ_03315	PWY-2941	L-lysine biosynthesis II
RPJ_03315	PWY-2942	L-lysine biosynthesis III
RPJ_03315	PWY-5097	L-lysine biosynthesis VI
RPJ_03330	PWY-5392	reductive TCA cycle II
RPJ_03330	PWY-5537	pyruvate fermentation to acetate V
RPJ_03330	PWY-5538	pyruvate fermentation to acetate VI
RPJ_03330	PWY-5690	TCA cycle II (plants and fungi)
RPJ_03330	PWY-5913	TCA cycle VI (obligate autotrophs)
RPJ_03330	PWY-6728	methylaspartate cycle
RPJ_03330	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_03330	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPJ_03335	PWY-5392	reductive TCA cycle II
RPJ_03335	PWY-5537	pyruvate fermentation to acetate V
RPJ_03335	PWY-5538	pyruvate fermentation to acetate VI
RPJ_03335	PWY-5690	TCA cycle II (plants and fungi)
RPJ_03335	PWY-5913	TCA cycle VI (obligate autotrophs)
RPJ_03335	PWY-6728	methylaspartate cycle
RPJ_03335	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_03335	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPJ_03430	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RPJ_03430	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPJ_03430	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RPJ_03440	PWY-5667	CDP-diacylglycerol biosynthesis I
RPJ_03440	PWY-5981	CDP-diacylglycerol biosynthesis III
RPJ_03580	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RPJ_03580	PWY-2201	folate transformations I
RPJ_03580	PWY-3841	folate transformations II
RPJ_03580	PWY-5030	L-histidine degradation III
RPJ_03580	PWY-5497	purine nucleobases degradation II (anaerobic)
RPJ_03580	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RPJ_03585	PWY-101	photosynthesis light reactions
RPJ_03585	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RPJ_03645	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_03645	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_03645	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPJ_03645	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPJ_03645	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_03645	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_03645	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_03645	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPJ_03655	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_03655	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_03655	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPJ_03655	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPJ_03655	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_03655	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_03655	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_03655	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPJ_03680	PWY-2781	<i>cis</i>-zeatin biosynthesis
RPJ_03690	PWY-6749	CMP-legionaminate biosynthesis I
RPJ_03750	PWY-381	nitrate reduction II (assimilatory)
RPJ_03750	PWY-5675	nitrate reduction V (assimilatory)
RPJ_03750	PWY-6549	L-glutamine biosynthesis III
RPJ_03750	PWY-6963	ammonia assimilation cycle I
RPJ_03750	PWY-6964	ammonia assimilation cycle II
RPJ_03790	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RPJ_03790	PWY-6549	L-glutamine biosynthesis III
RPJ_03790	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPJ_03790	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPJ_03810	PWY-2161	folate polyglutamylation
RPJ_03815	PWY-6854	ethylene biosynthesis III (microbes)
RPJ_03840	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPJ_03840	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RPJ_03895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_04000	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_04000	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPJ_04075	PWY-6823	molybdenum cofactor biosynthesis
RPJ_04075	PWY-6891	thiazole biosynthesis II (Bacillus)
RPJ_04075	PWY-6892	thiazole biosynthesis I (E. coli)
RPJ_04075	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPJ_04080	PWY-6823	molybdenum cofactor biosynthesis
RPJ_04080	PWY-6891	thiazole biosynthesis II (Bacillus)
RPJ_04080	PWY-6892	thiazole biosynthesis I (E. coli)
RPJ_04080	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPJ_04145	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
RPJ_04145	PWY-6174	mevalonate pathway II (archaea)
RPJ_04145	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
RPJ_04145	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
RPJ_04145	PWY-7102	bisabolene biosynthesis
RPJ_04145	PWY-7391	isoprene biosynthesis II (engineered)
RPJ_04145	PWY-7524	mevalonate pathway III (archaea)
RPJ_04145	PWY-7560	methylerythritol phosphate pathway II
RPJ_04145	PWY-922	mevalonate pathway I
RPJ_04160	PWY-7205	CMP phosphorylation
RPJ_04215	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_04215	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPJ_04280	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPJ_04280	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPJ_04420	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_04420	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPJ_04690	PWY-1361	benzoyl-CoA degradation I (aerobic)
RPJ_04690	PWY-5109	2-methylbutanoate biosynthesis
RPJ_04690	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RPJ_04690	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RPJ_04690	PWY-5177	glutaryl-CoA degradation
RPJ_04690	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPJ_04690	PWY-6435	4-hydroxybenzoate biosynthesis V
RPJ_04690	PWY-6583	pyruvate fermentation to butanol I
RPJ_04690	PWY-6863	pyruvate fermentation to hexanol
RPJ_04690	PWY-6883	pyruvate fermentation to butanol II
RPJ_04690	PWY-6944	androstenedione degradation
RPJ_04690	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RPJ_04690	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RPJ_04690	PWY-7007	methyl ketone biosynthesis
RPJ_04690	PWY-7046	4-coumarate degradation (anaerobic)
RPJ_04690	PWY-7094	fatty acid salvage
RPJ_04690	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RPJ_04690	PWY-735	jasmonic acid biosynthesis
RPJ_04690	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RPJ_04875	PWY-6012	acyl carrier protein metabolism I
RPJ_04875	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RPJ_04885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_04885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_05030	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPJ_05030	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPJ_05030	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPJ_05035	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPJ_05035	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPJ_05150	PWY-6703	preQ<sub>0</sub> biosynthesis
RPJ_05280	PWY-4381	fatty acid biosynthesis initiation I
RPJ_05280	PWY-5743	3-hydroxypropanoate cycle
RPJ_05280	PWY-5744	glyoxylate assimilation
RPJ_05280	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPJ_05280	PWY-6679	jadomycin biosynthesis
RPJ_05280	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPJ_05305	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RPJ_05305	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RPJ_05305	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RPJ_05305	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RPJ_05305	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
RPJ_05305	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
RPJ_05305	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
RPJ_05305	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RPJ_05305	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RPJ_05305	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
RPJ_05310	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPJ_05460	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_05595	PWY-5392	reductive TCA cycle II
RPJ_05595	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPJ_05595	PWY-5690	TCA cycle II (plants and fungi)
RPJ_05595	PWY-5913	TCA cycle VI (obligate autotrophs)
RPJ_05595	PWY-6728	methylaspartate cycle
RPJ_05595	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPJ_05595	PWY-7254	TCA cycle VII (acetate-producers)
RPJ_05595	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPJ_05730	PWY-5839	menaquinol-7 biosynthesis
RPJ_05730	PWY-5844	menaquinol-9 biosynthesis
RPJ_05730	PWY-5849	menaquinol-6 biosynthesis
RPJ_05730	PWY-5890	menaquinol-10 biosynthesis
RPJ_05730	PWY-5891	menaquinol-11 biosynthesis
RPJ_05730	PWY-5892	menaquinol-12 biosynthesis
RPJ_05730	PWY-5895	menaquinol-13 biosynthesis
RPJ_05810	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPJ_05810	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPJ_05810	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPJ_05810	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPJ_05810	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPJ_05810	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPJ_05940	PWY-6703	preQ<sub>0</sub> biosynthesis
RPJ_06105	PWY-6700	queuosine biosynthesis
RPJ_06195	PWY-4381	fatty acid biosynthesis initiation I
RPJ_06195	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RPJ_06195	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPJ_06305	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPJ_06305	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RPJ_06305	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RPJ_06310	PWY-1622	formaldehyde assimilation I (serine pathway)
RPJ_06310	PWY-181	photorespiration
RPJ_06310	PWY-2161	folate polyglutamylation
RPJ_06310	PWY-2201	folate transformations I
RPJ_06310	PWY-3661	glycine betaine degradation I
RPJ_06310	PWY-3661-1	glycine betaine degradation II (mammalian)
RPJ_06310	PWY-3841	folate transformations II
RPJ_06310	PWY-5497	purine nucleobases degradation II (anaerobic)
RPJ_06385	PWY-5269	cardiolipin biosynthesis II
RPJ_06385	PWY-5668	cardiolipin biosynthesis I
RPJ_06400	PWY-2941	L-lysine biosynthesis II
RPJ_06400	PWY-2942	L-lysine biosynthesis III
RPJ_06400	PWY-5097	L-lysine biosynthesis VI
RPJ_06400	PWY-6559	spermidine biosynthesis II
RPJ_06400	PWY-6562	norspermidine biosynthesis
RPJ_06400	PWY-7153	grixazone biosynthesis
RPJ_06455	PWY-5022	4-aminobutanoate degradation V
RPJ_06455	PWY-6728	methylaspartate cycle
RPJ_06455	PWY-7126	ethylene biosynthesis IV
RPJ_06495	PWY-5367	petroselinate biosynthesis
RPJ_06495	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RPJ_06495	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RPJ_06495	PWY-5989	stearate biosynthesis II (bacteria and plants)
RPJ_06495	PWY-5994	palmitate biosynthesis I (animals and fungi)
RPJ_06495	PWY-6113	superpathway of mycolate biosynthesis
RPJ_06495	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RPJ_06495	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RPJ_06495	PWY-6951	RPJ_06495|fabG|YP_005294548.1|GeneID:11866570
RPJ_06495	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
RPJ_06495	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPJ_06495	PWYG-321	mycolate biosynthesis
RPJ_06530	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_06565	PWY-4381	fatty acid biosynthesis initiation I
RPJ_06600	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPJ_06600	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RPJ_06605	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPJ_06605	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RPJ_06610	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPJ_06610	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RPJ_06635	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RPJ_06655	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RPJ_06755	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_06765	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPJ_06775	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPJ_06775	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPJ_07035	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPJ_07035	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPJ_07035	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPJ_07160	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPJ_07160	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
RPJ_07465	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPJ_07465	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RPJ_07515	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RPJ_07515	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RPJ_07540	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RPJ_07540	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
