RD1_0009	PWY-3661	glycine betaine degradation I
RD1_0009	PWY-4722	creatinine degradation II
RD1_0010	PWY-3661	glycine betaine degradation I
RD1_0010	PWY-4722	creatinine degradation II
RD1_0011	PWY-3661	glycine betaine degradation I
RD1_0011	PWY-4722	creatinine degradation II
RD1_0012	PWY-3661	glycine betaine degradation I
RD1_0012	PWY-4722	creatinine degradation II
RD1_0028	PWY-4041	γ-glutamyl cycle
RD1_0028	PWY-5826	hypoglycin biosynthesis
RD1_0035	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RD1_0043	PWY-6168	flavin biosynthesis III (fungi)
RD1_0043	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RD1_0046	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_0061	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_0062	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_0074	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_0074	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_0074	PWY-6454	vancomycin resistance I
RD1_0074	PWY-6901	superpathway of glucose and xylose degradation
RD1_0093	PWY-6654	phosphopantothenate biosynthesis III
RD1_0100	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_0101	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_0101	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_0101	PWY-7560	methylerythritol phosphate pathway II
RD1_0103	PWY-101	photosynthesis light reactions
RD1_0103	PWY-6785	hydrogen production VIII
RD1_0104	PWY-101	photosynthesis light reactions
RD1_0104	PWY-6785	hydrogen production VIII
RD1_0109	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
RD1_0109	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0109	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0110	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
RD1_0110	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0110	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0111	PWY-5526	bacteriochlorophyll <i>a</i> biosynthesis
RD1_0122	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0122	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0124	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0124	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0127	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_0127	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
RD1_0135	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0135	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0136	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0136	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0137	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0137	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0138	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0138	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0139	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_0139	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_0147	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
RD1_0147	PWY-6174	mevalonate pathway II (archaea)
RD1_0147	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
RD1_0147	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
RD1_0147	PWY-7102	bisabolene biosynthesis
RD1_0147	PWY-7391	isoprene biosynthesis II (engineered)
RD1_0147	PWY-7524	mevalonate pathway III (archaea)
RD1_0147	PWY-7560	methylerythritol phosphate pathway II
RD1_0147	PWY-922	mevalonate pathway I
RD1_0203	PWY-5839	menaquinol-7 biosynthesis
RD1_0203	PWY-5844	menaquinol-9 biosynthesis
RD1_0203	PWY-5849	menaquinol-6 biosynthesis
RD1_0203	PWY-5890	menaquinol-10 biosynthesis
RD1_0203	PWY-5891	menaquinol-11 biosynthesis
RD1_0203	PWY-5892	menaquinol-12 biosynthesis
RD1_0203	PWY-5895	menaquinol-13 biosynthesis
RD1_0219	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RD1_0228	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RD1_0251	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_0281	PWY-6654	phosphopantothenate biosynthesis III
RD1_0306	PWY-2941	L-lysine biosynthesis II
RD1_0306	PWY-2942	L-lysine biosynthesis III
RD1_0306	PWY-5097	L-lysine biosynthesis VI
RD1_0306	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_0306	PWY-6559	spermidine biosynthesis II
RD1_0306	PWY-6562	norspermidine biosynthesis
RD1_0306	PWY-7153	grixazone biosynthesis
RD1_0306	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_0312	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RD1_0312	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_0312	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RD1_0312	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_0314	PWY-5988	wound-induced proteolysis I
RD1_0314	PWY-6018	seed germination protein turnover
RD1_0320	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_0327	PWY-2161	folate polyglutamylation
RD1_0328	PWY-4381	fatty acid biosynthesis initiation I
RD1_0328	PWY-5743	3-hydroxypropanoate cycle
RD1_0328	PWY-5744	glyoxylate assimilation
RD1_0328	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_0328	PWY-6679	jadomycin biosynthesis
RD1_0328	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_0332	PWY-5101	L-isoleucine biosynthesis II
RD1_0332	PWY-5103	L-isoleucine biosynthesis III
RD1_0332	PWY-5104	L-isoleucine biosynthesis IV
RD1_0332	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_0335	PWY-1042	glycolysis IV (plant cytosol)
RD1_0335	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RD1_0335	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_0335	PWY-5723	Rubisco shunt
RD1_0335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_0335	PWY-6886	1-butanol autotrophic biosynthesis
RD1_0335	PWY-6901	superpathway of glucose and xylose degradation
RD1_0335	PWY-7003	glycerol degradation to butanol
RD1_0335	PWY-7124	ethylene biosynthesis V (engineered)
RD1_0335	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RD1_0374	PWY-3801	sucrose degradation II (sucrose synthase)
RD1_0374	PWY-6527	stachyose degradation
RD1_0374	PWY-6981	chitin biosynthesis
RD1_0374	PWY-7238	sucrose biosynthesis II
RD1_0374	PWY-7343	UDP-glucose biosynthesis
RD1_0375	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RD1_0375	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RD1_0384	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_0385	PWY-6502	oxidized GTP and dGTP detoxification
RD1_0392	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RD1_0392	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RD1_0392	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RD1_0392	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RD1_0392	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
RD1_0392	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
RD1_0392	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
RD1_0392	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RD1_0392	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RD1_0392	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
RD1_0417	PWY-4983	L-citrulline-nitric oxide cycle
RD1_0417	PWY-4984	urea cycle
RD1_0417	PWY-5	canavanine biosynthesis
RD1_0417	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_0417	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_0421	PWY-1281	sulfoacetaldehyde degradation I
RD1_0421	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RD1_0421	PWY-5482	pyruvate fermentation to acetate II
RD1_0421	PWY-5485	pyruvate fermentation to acetate IV
RD1_0421	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_0421	PWY-6637	sulfolactate degradation II
RD1_0421	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_0427	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RD1_0434	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_0438	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RD1_0465	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RD1_0469	PWY-5667	CDP-diacylglycerol biosynthesis I
RD1_0469	PWY-5981	CDP-diacylglycerol biosynthesis III
RD1_0471	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_0471	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_0484	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RD1_0512	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_0512	PWY-7494	choline degradation IV
RD1_0513	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
RD1_0522	PWY-5674	nitrate reduction IV (dissimilatory)
RD1_0537	PWY-6167	flavin biosynthesis II (archaea)
RD1_0548	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_0548	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_0548	PWY-7560	methylerythritol phosphate pathway II
RD1_0553	PWY-5057	L-valine degradation II
RD1_0553	PWY-5076	L-leucine degradation III
RD1_0553	PWY-5078	L-isoleucine degradation II
RD1_0553	PWY-5101	L-isoleucine biosynthesis II
RD1_0553	PWY-5103	L-isoleucine biosynthesis III
RD1_0553	PWY-5104	L-isoleucine biosynthesis IV
RD1_0553	PWY-5108	L-isoleucine biosynthesis V
RD1_0556	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RD1_0560	PWY-6167	flavin biosynthesis II (archaea)
RD1_0560	PWY-6168	flavin biosynthesis III (fungi)
RD1_0563	PWY-3781	aerobic respiration I (cytochrome c)
RD1_0563	PWY-6692	Fe(II) oxidation
RD1_0563	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
RD1_0563	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_0568	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RD1_0586	PWY-5381	pyridine nucleotide cycling (plants)
RD1_0604	PWY-6617	adenosine nucleotides degradation III
RD1_0605	PWY-6610	adenine and adenosine salvage IV
RD1_0612	PWY-5392	reductive TCA cycle II
RD1_0612	PWY-5537	pyruvate fermentation to acetate V
RD1_0612	PWY-5538	pyruvate fermentation to acetate VI
RD1_0612	PWY-5690	TCA cycle II (plants and fungi)
RD1_0612	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_0612	PWY-6728	methylaspartate cycle
RD1_0612	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_0612	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_0625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_0625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_0626	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_0626	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_0650	PWY-2941	L-lysine biosynthesis II
RD1_0650	PWY-2942	L-lysine biosynthesis III
RD1_0650	PWY-5097	L-lysine biosynthesis VI
RD1_0655	PWY-6123	inosine-5'-phosphate biosynthesis I
RD1_0655	PWY-6124	inosine-5'-phosphate biosynthesis II
RD1_0655	PWY-7234	inosine-5'-phosphate biosynthesis III
RD1_0661	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
RD1_0665	PWY-7242	D-fructuronate degradation
RD1_0686	PWY-5101	L-isoleucine biosynthesis II
RD1_0686	PWY-5103	L-isoleucine biosynthesis III
RD1_0686	PWY-5104	L-isoleucine biosynthesis IV
RD1_0686	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_0720	PWY-5686	UMP biosynthesis
RD1_0737	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
RD1_0737	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
RD1_0737	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
RD1_0737	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
RD1_0737	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
RD1_0737	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
RD1_0737	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
RD1_0737	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
RD1_0737	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
RD1_0737	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
RD1_0738	PWY-6825	phosphatidylcholine biosynthesis V
RD1_0746	PWY-6910	hydroxymethylpyrimidine salvage
RD1_0746	PWY-7356	thiamin salvage IV (yeast)
RD1_0746	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_0749	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_0749	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_0750	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RD1_0750	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RD1_0750	PWY-6897	thiamin salvage II
RD1_0750	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RD1_0750	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RD1_0750	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
RD1_0750	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_0753	PWY-6899	base-degraded thiamin salvage
RD1_0753	PWY-7356	thiamin salvage IV (yeast)
RD1_0758	PWY-4981	L-proline biosynthesis II (from arginine)
RD1_0802	PWY-6823	molybdenum cofactor biosynthesis
RD1_0802	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_0802	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_0802	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RD1_0813	PWY-2941	L-lysine biosynthesis II
RD1_0813	PWY-5097	L-lysine biosynthesis VI
RD1_0818	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_0818	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_0821	PWY-1281	sulfoacetaldehyde degradation I
RD1_0821	PWY-5482	pyruvate fermentation to acetate II
RD1_0821	PWY-5485	pyruvate fermentation to acetate IV
RD1_0821	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_0821	PWY-6637	sulfolactate degradation II
RD1_0823	PWY-5692	allantoin degradation to glyoxylate II
RD1_0823	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
RD1_0826	PWY-1281	sulfoacetaldehyde degradation I
RD1_0826	PWY-6637	sulfolactate degradation II
RD1_0841	PWY-5482	pyruvate fermentation to acetate II
RD1_0841	PWY-5485	pyruvate fermentation to acetate IV
RD1_0841	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_0842	PWY-1281	sulfoacetaldehyde degradation I
RD1_0842	PWY-5482	pyruvate fermentation to acetate II
RD1_0842	PWY-5485	pyruvate fermentation to acetate IV
RD1_0842	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_0842	PWY-6637	sulfolactate degradation II
RD1_0861	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_0861	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_0863	PWY-5506	methanol oxidation to formaldehyde IV
RD1_0887	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_0887	PWY-3162	L-tryptophan degradation V (side chain pathway)
RD1_0887	PWY-5057	L-valine degradation II
RD1_0887	PWY-5076	L-leucine degradation III
RD1_0887	PWY-5078	L-isoleucine degradation II
RD1_0887	PWY-5079	L-phenylalanine degradation III
RD1_0887	PWY-5082	L-methionine degradation III
RD1_0887	PWY-5480	pyruvate fermentation to ethanol I
RD1_0887	PWY-5486	pyruvate fermentation to ethanol II
RD1_0887	PWY-5751	phenylethanol biosynthesis
RD1_0887	PWY-6028	acetoin degradation
RD1_0887	PWY-6313	serotonin degradation
RD1_0887	PWY-6333	acetaldehyde biosynthesis I
RD1_0887	PWY-6342	noradrenaline and adrenaline degradation
RD1_0887	PWY-6587	pyruvate fermentation to ethanol III
RD1_0887	PWY-6802	salidroside biosynthesis
RD1_0887	PWY-6871	3-methylbutanol biosynthesis
RD1_0887	PWY-7013	L-1,2-propanediol degradation
RD1_0887	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_0887	PWY-7118	chitin degradation to ethanol
RD1_0887	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RD1_0887	PWY-7557	dehydrodiconiferyl alcohol degradation
RD1_0888	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_0934	PWY-5350	thiosulfate disproportionation III (rhodanese)
RD1_0935	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_0935	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RD1_0935	PWY-6638	sulfolactate degradation III
RD1_0935	PWY-6642	(<i>R</i>)-cysteate degradation
RD1_0935	PWY-6643	coenzyme M biosynthesis II
RD1_0935	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RD1_0935	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_0935	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_0944	PWY-7158	L-phenylalanine degradation V
RD1_0972	PWY-2941	L-lysine biosynthesis II
RD1_0972	PWY-2942	L-lysine biosynthesis III
RD1_0972	PWY-5097	L-lysine biosynthesis VI
RD1_0977	PWY-1281	sulfoacetaldehyde degradation I
RD1_0977	PWY-6637	sulfolactate degradation II
RD1_0998	PWY-4381	fatty acid biosynthesis initiation I
RD1_0998	PWY-5743	3-hydroxypropanoate cycle
RD1_0998	PWY-5744	glyoxylate assimilation
RD1_0998	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_0998	PWY-6679	jadomycin biosynthesis
RD1_0998	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_1007	PWY-1042	glycolysis IV (plant cytosol)
RD1_1007	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RD1_1007	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_1007	PWY-5723	Rubisco shunt
RD1_1007	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_1007	PWY-6886	1-butanol autotrophic biosynthesis
RD1_1007	PWY-6901	superpathway of glucose and xylose degradation
RD1_1007	PWY-7003	glycerol degradation to butanol
RD1_1007	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RD1_1007	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_1065	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_1065	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_1105	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RD1_1105	PWY-5723	Rubisco shunt
RD1_1116	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_1117	PWY-6672	<i>cis</i>-genanyl-CoA degradation
RD1_1117	PWY-7118	chitin degradation to ethanol
RD1_1128	PWY-5692	allantoin degradation to glyoxylate II
RD1_1128	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
RD1_1129	PWY-6936	seleno-amino acid biosynthesis
RD1_1129	PWY-7274	D-cycloserine biosynthesis
RD1_1150	PWY-6823	molybdenum cofactor biosynthesis
RD1_1152	PWY-6420	pyrroloquinoline quinone biosynthesis
RD1_1161	PWY-6832	2-aminoethylphosphonate degradation II
RD1_1162	PWY-5392	reductive TCA cycle II
RD1_1162	PWY-5537	pyruvate fermentation to acetate V
RD1_1162	PWY-5538	pyruvate fermentation to acetate VI
RD1_1162	PWY-5690	TCA cycle II (plants and fungi)
RD1_1162	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_1162	PWY-6728	methylaspartate cycle
RD1_1162	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1162	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1163	PWY-5392	reductive TCA cycle II
RD1_1163	PWY-5537	pyruvate fermentation to acetate V
RD1_1163	PWY-5538	pyruvate fermentation to acetate VI
RD1_1163	PWY-5690	TCA cycle II (plants and fungi)
RD1_1163	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_1163	PWY-6728	methylaspartate cycle
RD1_1163	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1163	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1165	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_1165	PWY-181	photorespiration
RD1_1165	PWY-2161	folate polyglutamylation
RD1_1165	PWY-2201	folate transformations I
RD1_1165	PWY-3661	glycine betaine degradation I
RD1_1165	PWY-3661-1	glycine betaine degradation II (mammalian)
RD1_1165	PWY-3841	folate transformations II
RD1_1165	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_1179	PWY-5743	3-hydroxypropanoate cycle
RD1_1179	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_1179	PWY-6728	methylaspartate cycle
RD1_1179	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1196	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_1196	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RD1_1196	PWY-6269	adenosylcobalamin salvage from cobinamide II
RD1_1201	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RD1_1201	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_1201	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_1201	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RD1_1211	PWY-6871	3-methylbutanol biosynthesis
RD1_1215	PWY-5381	pyridine nucleotide cycling (plants)
RD1_1215	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RD1_1219	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_1243	PWY-5381	pyridine nucleotide cycling (plants)
RD1_1243	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RD1_1244	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RD1_1244	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RD1_1246	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_1259	PWY-5381	pyridine nucleotide cycling (plants)
RD1_1261	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
RD1_1270	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1270	PWY-4521	arsenite oxidation I (respiratory)
RD1_1270	PWY-6692	Fe(II) oxidation
RD1_1270	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1271	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1271	PWY-4521	arsenite oxidation I (respiratory)
RD1_1271	PWY-6692	Fe(II) oxidation
RD1_1271	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1282	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_1282	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_1283	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_1283	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_1284	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RD1_1284	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RD1_1292	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_1292	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_1307	PWY-6829	tRNA methylation (yeast)
RD1_1307	PWY-7285	methylwyosine biosynthesis
RD1_1307	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RD1_1312	PWY-3461	L-tyrosine biosynthesis II
RD1_1312	PWY-3462	L-phenylalanine biosynthesis II
RD1_1312	PWY-6120	L-tyrosine biosynthesis III
RD1_1312	PWY-6627	salinosporamide A biosynthesis
RD1_1331	PWY-5443	aminopropanol phosphate biosynthesis I
RD1_1334	PWY-4061	glutathione-mediated detoxification I
RD1_1334	PWY-6842	glutathione-mediated detoxification II
RD1_1334	PWY-7112	4-hydroxy-2-nonenal detoxification
RD1_1334	PWY-7533	gliotoxin biosynthesis
RD1_1336	PWY-6936	seleno-amino acid biosynthesis
RD1_1344	PWY-5250	methanogenesis from trimethylamine
RD1_1355	PWY-7560	methylerythritol phosphate pathway II
RD1_1357	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RD1_1357	PWY-6148	tetrahydromethanopterin biosynthesis
RD1_1357	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RD1_1357	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RD1_1364	PWY-6012	acyl carrier protein metabolism I
RD1_1364	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RD1_1376	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RD1_1376	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_1385	PWY-1361	benzoyl-CoA degradation I (aerobic)
RD1_1385	PWY-5109	2-methylbutanoate biosynthesis
RD1_1385	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RD1_1385	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RD1_1385	PWY-5177	glutaryl-CoA degradation
RD1_1385	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_1385	PWY-6435	4-hydroxybenzoate biosynthesis V
RD1_1385	PWY-6583	pyruvate fermentation to butanol I
RD1_1385	PWY-6863	pyruvate fermentation to hexanol
RD1_1385	PWY-6883	pyruvate fermentation to butanol II
RD1_1385	PWY-6944	androstenedione degradation
RD1_1385	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RD1_1385	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RD1_1385	PWY-7007	methyl ketone biosynthesis
RD1_1385	PWY-7046	4-coumarate degradation (anaerobic)
RD1_1385	PWY-7094	fatty acid salvage
RD1_1385	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RD1_1385	PWY-735	jasmonic acid biosynthesis
RD1_1385	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RD1_1389	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_1389	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RD1_1389	PWY-6268	adenosylcobalamin salvage from cobalamin
RD1_1389	PWY-6269	adenosylcobalamin salvage from cobinamide II
RD1_1416	PWY-31	canavanine degradation
RD1_1416	PWY-4984	urea cycle
RD1_1416	PWY-6305	putrescine biosynthesis IV
RD1_1416	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RD1_1433	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_1452	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_1452	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_1472	PWY-4981	L-proline biosynthesis II (from arginine)
RD1_1497	PWY-381	nitrate reduction II (assimilatory)
RD1_1497	PWY-5675	nitrate reduction V (assimilatory)
RD1_1497	PWY-6549	L-glutamine biosynthesis III
RD1_1497	PWY-6963	ammonia assimilation cycle I
RD1_1497	PWY-6964	ammonia assimilation cycle II
RD1_1519	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
RD1_1527	PWY-5316	nicotine biosynthesis
RD1_1527	PWY-5381	pyridine nucleotide cycling (plants)
RD1_1527	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RD1_1527	PWY-7342	superpathway of nicotine biosynthesis
RD1_1528	PWY-5532	adenosine nucleotides degradation IV
RD1_1528	PWY-7181	pyrimidine deoxyribonucleosides degradation
RD1_1547	PWY-6748	nitrate reduction VII (denitrification)
RD1_1547	PWY-7084	nitrifier denitrification
RD1_1561	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1561	PWY-4521	arsenite oxidation I (respiratory)
RD1_1561	PWY-6692	Fe(II) oxidation
RD1_1561	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1566	PWY-5194	siroheme biosynthesis
RD1_1566	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_1574	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_1576	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_1576	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
RD1_1582	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_1582	PWY-7494	choline degradation IV
RD1_1591	PWY-4983	L-citrulline-nitric oxide cycle
RD1_1591	PWY-4984	urea cycle
RD1_1591	PWY-5	canavanine biosynthesis
RD1_1591	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_1591	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_1595	PWY-2941	L-lysine biosynthesis II
RD1_1595	PWY-2942	L-lysine biosynthesis III
RD1_1595	PWY-5097	L-lysine biosynthesis VI
RD1_1602	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RD1_1602	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RD1_1603	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RD1_1603	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RD1_1608	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RD1_1609	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RD1_1611	PWY-5392	reductive TCA cycle II
RD1_1611	PWY-5537	pyruvate fermentation to acetate V
RD1_1611	PWY-5538	pyruvate fermentation to acetate VI
RD1_1611	PWY-5690	TCA cycle II (plants and fungi)
RD1_1611	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_1611	PWY-6728	methylaspartate cycle
RD1_1611	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1611	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1615	PWY-5392	reductive TCA cycle II
RD1_1615	PWY-5537	pyruvate fermentation to acetate V
RD1_1615	PWY-5538	pyruvate fermentation to acetate VI
RD1_1615	PWY-5690	TCA cycle II (plants and fungi)
RD1_1615	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_1615	PWY-6728	methylaspartate cycle
RD1_1615	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1615	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1617	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_1617	PWY-5392	reductive TCA cycle II
RD1_1617	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RD1_1617	PWY-5690	TCA cycle II (plants and fungi)
RD1_1617	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_1617	PWY-6728	methylaspartate cycle
RD1_1617	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1617	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RD1_1617	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_1623	PWY-5741	ethylmalonyl-CoA pathway
RD1_1623	PWY-5744	glyoxylate assimilation
RD1_1623	PWY-6728	methylaspartate cycle
RD1_1628	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1628	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RD1_1628	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RD1_1628	PWY-5690	TCA cycle II (plants and fungi)
RD1_1628	PWY-6728	methylaspartate cycle
RD1_1628	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1628	PWY-7254	TCA cycle VII (acetate-producers)
RD1_1628	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1630	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1630	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RD1_1630	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RD1_1630	PWY-5690	TCA cycle II (plants and fungi)
RD1_1630	PWY-6728	methylaspartate cycle
RD1_1630	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_1630	PWY-7254	TCA cycle VII (acetate-producers)
RD1_1630	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1634	PWY-4202	arsenate detoxification I (glutaredoxin)
RD1_1634	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RD1_1634	PWY-6608	guanosine nucleotides degradation III
RD1_1634	PWY-6609	adenine and adenosine salvage III
RD1_1634	PWY-6611	adenine and adenosine salvage V
RD1_1634	PWY-6620	guanine and guanosine salvage
RD1_1634	PWY-6627	salinosporamide A biosynthesis
RD1_1634	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
RD1_1634	PWY-7179	purine deoxyribonucleosides degradation I
RD1_1634	PWY-7179-1	purine deoxyribonucleosides degradation
RD1_1635	PWY-5743	3-hydroxypropanoate cycle
RD1_1635	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_1635	PWY-6728	methylaspartate cycle
RD1_1635	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_1636	PWY-5667	CDP-diacylglycerol biosynthesis I
RD1_1636	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RD1_1639	PWY-6157	autoinducer AI-1 biosynthesis
RD1_1661	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RD1_1661	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RD1_1677	PWY-4981	L-proline biosynthesis II (from arginine)
RD1_1677	PWY-4984	urea cycle
RD1_1677	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_1701	PWY-3661	glycine betaine degradation I
RD1_1701	PWY-4722	creatinine degradation II
RD1_1702	PWY-3661	glycine betaine degradation I
RD1_1702	PWY-4722	creatinine degradation II
RD1_1704	PWY-3661	glycine betaine degradation I
RD1_1704	PWY-4722	creatinine degradation II
RD1_1705	PWY-3661	glycine betaine degradation I
RD1_1705	PWY-4722	creatinine degradation II
RD1_1725	PWY-6906	chitin derivatives degradation
RD1_1725	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
RD1_1725	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
RD1_1750	PWY-6832	2-aminoethylphosphonate degradation II
RD1_1756	PWY-4841	UDP-&alpha;-D-glucuronate biosynthesis (from <i>myo</i>-inositol)
RD1_1762	PWY-2201	folate transformations I
RD1_1762	PWY-3841	folate transformations II
RD1_1772	PWY-6854	ethylene biosynthesis III (microbes)
RD1_1788	PWY-3661	glycine betaine degradation I
RD1_1788	PWY-4722	creatinine degradation II
RD1_1789	PWY-3661	glycine betaine degradation I
RD1_1789	PWY-4722	creatinine degradation II
RD1_1790	PWY-3661	glycine betaine degradation I
RD1_1790	PWY-4722	creatinine degradation II
RD1_1791	PWY-3661	glycine betaine degradation I
RD1_1791	PWY-4722	creatinine degradation II
RD1_1800	PWY-6167	flavin biosynthesis II (archaea)
RD1_1800	PWY-6168	flavin biosynthesis III (fungi)
RD1_1800	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_1801	PWY-6167	flavin biosynthesis II (archaea)
RD1_1801	PWY-6168	flavin biosynthesis III (fungi)
RD1_1801	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RD1_1803	PWY-6167	flavin biosynthesis II (archaea)
RD1_1803	PWY-6168	flavin biosynthesis III (fungi)
RD1_1826	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_1826	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RD1_1826	PWY-6269	adenosylcobalamin salvage from cobinamide II
RD1_1827	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_1827	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RD1_1827	PWY-6269	adenosylcobalamin salvage from cobinamide II
RD1_1834	PWY-5344	L-homocysteine biosynthesis
RD1_1834	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
RD1_1872	PWY-5386	methylglyoxal degradation I
RD1_1874	PWY-3841	folate transformations II
RD1_1874	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_1874	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_1874	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RD1_1874	PWY-7199	pyrimidine deoxyribonucleosides salvage
RD1_1874	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RD1_1875	PWY-3841	folate transformations II
RD1_1875	PWY-6614	tetrahydrofolate biosynthesis
RD1_1892	PWY-381	nitrate reduction II (assimilatory)
RD1_1892	PWY-5675	nitrate reduction V (assimilatory)
RD1_1892	PWY-6549	L-glutamine biosynthesis III
RD1_1892	PWY-6963	ammonia assimilation cycle I
RD1_1892	PWY-6964	ammonia assimilation cycle II
RD1_1894	PWY-381	nitrate reduction II (assimilatory)
RD1_1894	PWY-5675	nitrate reduction V (assimilatory)
RD1_1894	PWY-6549	L-glutamine biosynthesis III
RD1_1894	PWY-6963	ammonia assimilation cycle I
RD1_1894	PWY-6964	ammonia assimilation cycle II
RD1_1906	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RD1_1906	PWY-7177	UTP and CTP dephosphorylation II
RD1_1906	PWY-7185	UTP and CTP dephosphorylation I
RD1_1908	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
RD1_1908	PWY-581	indole-3-acetate biosynthesis II
RD1_1908	PWY-7308	acrylonitrile degradation I
RD1_1909	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
RD1_1909	PWY-581	indole-3-acetate biosynthesis II
RD1_1909	PWY-7308	acrylonitrile degradation I
RD1_1910	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
RD1_1910	PWY-581	indole-3-acetate biosynthesis II
RD1_1910	PWY-7308	acrylonitrile degradation I
RD1_1912	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_1915	PWY-6898	thiamin salvage III
RD1_1915	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RD1_1915	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RD1_1918	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RD1_1918	PWY-5723	Rubisco shunt
RD1_1927	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_1927	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_1927	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_1941	PWY-5663	tetrahydrobiopterin biosynthesis I
RD1_1941	PWY-5664	tetrahydrobiopterin biosynthesis II
RD1_1941	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RD1_1941	PWY-6703	preQ<sub>0</sub> biosynthesis
RD1_1941	PWY-6983	tetrahydrobiopterin biosynthesis III
RD1_1941	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RD1_1948	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RD1_1948	PWY-6549	L-glutamine biosynthesis III
RD1_1948	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RD1_1948	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_1950	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RD1_1950	PWY-6148	tetrahydromethanopterin biosynthesis
RD1_1950	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RD1_1950	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RD1_1951	PWY-6614	tetrahydrofolate biosynthesis
RD1_1952	PWY-6749	CMP-legionaminate biosynthesis I
RD1_1954	PWY-5101	L-isoleucine biosynthesis II
RD1_1954	PWY-5103	L-isoleucine biosynthesis III
RD1_1954	PWY-5104	L-isoleucine biosynthesis IV
RD1_1954	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_1957	PWY-6832	2-aminoethylphosphonate degradation II
RD1_1963	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_1963	PWY-5686	UMP biosynthesis
RD1_1963	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_1967	PWY-3781	aerobic respiration I (cytochrome c)
RD1_1967	PWY-4521	arsenite oxidation I (respiratory)
RD1_1967	PWY-6692	Fe(II) oxidation
RD1_1967	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_1970	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RD1_1970	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RD1_2000	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RD1_2008	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_2008	PWY-6606	guanosine nucleotides degradation II
RD1_2008	PWY-6608	guanosine nucleotides degradation III
RD1_2008	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RD1_2023	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_2023	PWY-7494	choline degradation IV
RD1_2024	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_2024	PWY-7494	choline degradation IV
RD1_2028	PWY-4381	fatty acid biosynthesis initiation I
RD1_2028	PWY-5743	3-hydroxypropanoate cycle
RD1_2028	PWY-5744	glyoxylate assimilation
RD1_2028	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_2028	PWY-6679	jadomycin biosynthesis
RD1_2028	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_2035	PWY-5743	3-hydroxypropanoate cycle
RD1_2035	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_2035	PWY-6728	methylaspartate cycle
RD1_2035	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_2067	PWY-7533	gliotoxin biosynthesis
RD1_2077	PWY-6826	phosphatidylcholine biosynthesis VI
RD1_2080	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RD1_2080	PWY-5723	Rubisco shunt
RD1_2105	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RD1_2105	PWY-2201	folate transformations I
RD1_2105	PWY-3841	folate transformations II
RD1_2105	PWY-5030	L-histidine degradation III
RD1_2105	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_2105	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RD1_2145	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_2145	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_2148	PWY-6605	adenine and adenosine salvage II
RD1_2148	PWY-6610	adenine and adenosine salvage IV
RD1_2157	PWY-2941	L-lysine biosynthesis II
RD1_2157	PWY-2942	L-lysine biosynthesis III
RD1_2157	PWY-5097	L-lysine biosynthesis VI
RD1_2157	PWY-6559	spermidine biosynthesis II
RD1_2157	PWY-6562	norspermidine biosynthesis
RD1_2157	PWY-7153	grixazone biosynthesis
RD1_2173	PWY-381	nitrate reduction II (assimilatory)
RD1_2173	PWY-5675	nitrate reduction V (assimilatory)
RD1_2173	PWY-6549	L-glutamine biosynthesis III
RD1_2173	PWY-6963	ammonia assimilation cycle I
RD1_2173	PWY-6964	ammonia assimilation cycle II
RD1_2179	PWY-4041	&gamma;-glutamyl cycle
RD1_2179	PWY-5826	hypoglycin biosynthesis
RD1_2181	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_2181	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RD1_2181	PWY-6268	adenosylcobalamin salvage from cobalamin
RD1_2181	PWY-6269	adenosylcobalamin salvage from cobinamide II
RD1_2191	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
RD1_2198	PWY-6654	phosphopantothenate biosynthesis III
RD1_2204	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_2204	PWY-6549	L-glutamine biosynthesis III
RD1_2204	PWY-6728	methylaspartate cycle
RD1_2204	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_2204	PWY-7124	ethylene biosynthesis V (engineered)
RD1_2204	PWY-7254	TCA cycle VII (acetate-producers)
RD1_2204	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RD1_2252	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_2252	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_2252	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_2253	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_2253	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RD1_2262	PWY-6123	inosine-5'-phosphate biosynthesis I
RD1_2262	PWY-6124	inosine-5'-phosphate biosynthesis II
RD1_2262	PWY-7234	inosine-5'-phosphate biosynthesis III
RD1_2263	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_2263	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_2263	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_2264	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_2264	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_2264	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_2270	PWY-1042	glycolysis IV (plant cytosol)
RD1_2270	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RD1_2270	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2270	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_2270	PWY-7385	1,3-propanediol biosynthesis (engineered)
RD1_2273	PWY-5392	reductive TCA cycle II
RD1_2273	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RD1_2273	PWY-5690	TCA cycle II (plants and fungi)
RD1_2273	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_2273	PWY-6728	methylaspartate cycle
RD1_2273	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_2273	PWY-7254	TCA cycle VII (acetate-producers)
RD1_2273	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_2318	PWY-3121	linamarin degradation
RD1_2318	PWY-5176	coumarin biosynthesis (via 2-coumarate)
RD1_2318	PWY-6002	lotaustralin degradation
RD1_2318	PWY-6788	cellulose degradation II (fungi)
RD1_2318	PWY-7089	taxiphyllin bioactivation
RD1_2318	PWY-7091	linustatin bioactivation
RD1_2318	PWY-7092	neolinustatin bioactivation
RD1_2332	PWY-6672	<i>cis</i>-genanyl-CoA degradation
RD1_2332	PWY-7118	chitin degradation to ethanol
RD1_2336	PWY-6215	4-chlorobenzoate degradation
RD1_2383	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
RD1_2384	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
RD1_2384	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
RD1_2387	PWY-7399	methylphosphonate degradation II
RD1_2388	PWY-5532	adenosine nucleotides degradation IV
RD1_2389	PWY-7399	methylphosphonate degradation II
RD1_2391	PWY-7399	methylphosphonate degradation II
RD1_2394	PWY-7399	methylphosphonate degradation II
RD1_2398	PWY-1042	glycolysis IV (plant cytosol)
RD1_2398	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2398	PWY-6901	superpathway of glucose and xylose degradation
RD1_2398	PWY-7003	glycerol degradation to butanol
RD1_2405	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_2405	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_2406	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RD1_2420	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RD1_2420	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RD1_2420	PWY-6897	thiamin salvage II
RD1_2420	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RD1_2420	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RD1_2420	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
RD1_2420	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_2423	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_2423	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_2448	PWY-6823	molybdenum cofactor biosynthesis
RD1_2498	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RD1_2498	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RD1_2499	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_2507	PWY-2301	<i>myo</i>-inositol biosynthesis
RD1_2507	PWY-4702	phytate degradation I
RD1_2507	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
RD1_2509	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
RD1_2509	PWY-6853	ethylene biosynthesis II (microbes)
RD1_2509	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RD1_2523	PWY-1361	benzoyl-CoA degradation I (aerobic)
RD1_2523	PWY-3602	L-carnitine degradation II
RD1_2523	PWY-5109	2-methylbutanoate biosynthesis
RD1_2523	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RD1_2523	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RD1_2523	PWY-5177	glutaryl-CoA degradation
RD1_2523	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_2523	PWY-6435	4-hydroxybenzoate biosynthesis V
RD1_2523	PWY-6583	pyruvate fermentation to butanol I
RD1_2523	PWY-6863	pyruvate fermentation to hexanol
RD1_2523	PWY-6883	pyruvate fermentation to butanol II
RD1_2523	PWY-6944	androstenedione degradation
RD1_2523	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RD1_2523	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RD1_2523	PWY-7007	methyl ketone biosynthesis
RD1_2523	PWY-7046	4-coumarate degradation (anaerobic)
RD1_2523	PWY-7094	fatty acid salvage
RD1_2523	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RD1_2523	PWY-735	jasmonic acid biosynthesis
RD1_2523	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RD1_2523	PWY-7472	D-carnitine degradation II
RD1_2530	PWY-5250	methanogenesis from trimethylamine
RD1_2537	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2541	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RD1_2559	PWY-6123	inosine-5'-phosphate biosynthesis I
RD1_2559	PWY-6124	inosine-5'-phosphate biosynthesis II
RD1_2559	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_2559	PWY-7234	inosine-5'-phosphate biosynthesis III
RD1_2569	PWY-381	nitrate reduction II (assimilatory)
RD1_2569	PWY-5675	nitrate reduction V (assimilatory)
RD1_2569	PWY-6549	L-glutamine biosynthesis III
RD1_2569	PWY-6963	ammonia assimilation cycle I
RD1_2569	PWY-6964	ammonia assimilation cycle II
RD1_2584	PWY-2781	<i>cis</i>-zeatin biosynthesis
RD1_2590	PWY-7560	methylerythritol phosphate pathway II
RD1_2595	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RD1_2595	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RD1_2595	PWY-5989	stearate biosynthesis II (bacteria and plants)
RD1_2595	PWY-5994	palmitate biosynthesis I (animals and fungi)
RD1_2595	PWY-6113	superpathway of mycolate biosynthesis
RD1_2595	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RD1_2595	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RD1_2595	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_2595	PWYG-321	mycolate biosynthesis
RD1_2635	PWY-6164	3-dehydroquinate biosynthesis I
RD1_2638	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RD1_2651	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RD1_2651	PWY-6416	quinate degradation II
RD1_2651	PWY-6707	gallate biosynthesis
RD1_2689	PWY-6823	molybdenum cofactor biosynthesis
RD1_2689	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_2689	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_2689	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RD1_2698	PWY-6823	molybdenum cofactor biosynthesis
RD1_2698	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_2698	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_2698	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RD1_2704	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_2704	PWY-6549	L-glutamine biosynthesis III
RD1_2704	PWY-6728	methylaspartate cycle
RD1_2704	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_2704	PWY-7124	ethylene biosynthesis V (engineered)
RD1_2704	PWY-7254	TCA cycle VII (acetate-producers)
RD1_2704	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RD1_2713	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RD1_2713	PWY-6596	adenosine nucleotides degradation I
RD1_2713	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RD1_2720	PWY-3801	sucrose degradation II (sucrose synthase)
RD1_2720	PWY-5054	sorbitol biosynthesis I
RD1_2720	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RD1_2720	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RD1_2720	PWY-5659	GDP-mannose biosynthesis
RD1_2720	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_2720	PWY-621	sucrose degradation III (sucrose invertase)
RD1_2720	PWY-622	starch biosynthesis
RD1_2720	PWY-6531	mannitol cycle
RD1_2720	PWY-6981	chitin biosynthesis
RD1_2720	PWY-7238	sucrose biosynthesis II
RD1_2720	PWY-7347	sucrose biosynthesis III
RD1_2720	PWY-7385	1,3-propanediol biosynthesis (engineered)
RD1_2721	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RD1_2721	PWY-6855	chitin degradation I (archaea)
RD1_2721	PWY-6906	chitin derivatives degradation
RD1_2722	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RD1_2730	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RD1_2730	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RD1_2730	PWY-6897	thiamin salvage II
RD1_2730	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RD1_2730	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RD1_2730	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
RD1_2730	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_2734	PWY-6019	pseudouridine degradation
RD1_2749	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_2749	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_2766	PWY-7560	methylerythritol phosphate pathway II
RD1_2767	PWY-7560	methylerythritol phosphate pathway II
RD1_2768	PWY-5269	cardiolipin biosynthesis II
RD1_2768	PWY-5668	cardiolipin biosynthesis I
RD1_2771	PWY-6599	guanine and guanosine salvage II
RD1_2771	PWY-6609	adenine and adenosine salvage III
RD1_2771	PWY-6610	adenine and adenosine salvage IV
RD1_2771	PWY-6620	guanine and guanosine salvage
RD1_2773	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RD1_2773	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RD1_2773	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RD1_2777	PWY-5250	methanogenesis from trimethylamine
RD1_2778	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RD1_2812	PWY-5101	L-isoleucine biosynthesis II
RD1_2812	PWY-5103	L-isoleucine biosynthesis III
RD1_2812	PWY-5104	L-isoleucine biosynthesis IV
RD1_2812	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RD1_2812	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RD1_2812	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RD1_2812	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_2813	PWY-5101	L-isoleucine biosynthesis II
RD1_2813	PWY-5103	L-isoleucine biosynthesis III
RD1_2813	PWY-5104	L-isoleucine biosynthesis IV
RD1_2813	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RD1_2813	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RD1_2813	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RD1_2813	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_2825	PWY-7560	methylerythritol phosphate pathway II
RD1_2827	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_2827	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
RD1_2835	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RD1_2848	PWY-3341	L-proline biosynthesis III
RD1_2848	PWY-4981	L-proline biosynthesis II (from arginine)
RD1_2848	PWY-6344	L-ornithine degradation II (Stickland reaction)
RD1_2865	PWY-6527	stachyose degradation
RD1_2867	PWY-7130	L-glucose degradation
RD1_2868	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RD1_2868	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RD1_2868	PWY-7242	D-fructuronate degradation
RD1_2868	PWY-7310	D-glucosaminate degradation
RD1_2869	PWY-6807	xyloglucan degradation II (exoglucanase)
RD1_2870	PWY-6749	CMP-legionaminate biosynthesis I
RD1_2871	PWY-5941	glycogen degradation II (eukaryotic)
RD1_2871	PWY-6724	starch degradation II
RD1_2871	PWY-6737	starch degradation V
RD1_2871	PWY-7238	sucrose biosynthesis II
RD1_2873	PWY-622	starch biosynthesis
RD1_2874	PWY-622	starch biosynthesis
RD1_2875	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RD1_2875	PWY-622	starch biosynthesis
RD1_2876	PWY-5941	glycogen degradation II (eukaryotic)
RD1_2876	PWY-622	starch biosynthesis
RD1_2876	PWY-6731	starch degradation III
RD1_2876	PWY-6737	starch degradation V
RD1_2876	PWY-7238	sucrose biosynthesis II
RD1_2878	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RD1_2878	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RD1_2878	PWY-7242	D-fructuronate degradation
RD1_2878	PWY-7310	D-glucosaminate degradation
RD1_2879	PWY-5101	L-isoleucine biosynthesis II
RD1_2879	PWY-5103	L-isoleucine biosynthesis III
RD1_2879	PWY-5104	L-isoleucine biosynthesis IV
RD1_2879	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_2880	PWY-1042	glycolysis IV (plant cytosol)
RD1_2880	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2880	PWY-6901	superpathway of glucose and xylose degradation
RD1_2880	PWY-7003	glycerol degradation to butanol
RD1_2883	PWY-4261	glycerol degradation I
RD1_2884	PWY-4261	glycerol degradation I
RD1_2884	PWY-6118	glycerol-3-phosphate shuttle
RD1_2884	PWY-6952	glycerophosphodiester degradation
RD1_2890	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_2892	PWY-6832	2-aminoethylphosphonate degradation II
RD1_2934	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
RD1_2934	PWY-7248	pectin degradation III
RD1_2952	PWY-6700	queuosine biosynthesis
RD1_2961	PWY-1042	glycolysis IV (plant cytosol)
RD1_2961	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2961	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_2961	PWY-7003	glycerol degradation to butanol
RD1_2964	PWY-5194	siroheme biosynthesis
RD1_2964	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_2966	PWY-6683	sulfate reduction III (assimilatory)
RD1_2982	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RD1_2982	PWY-5723	Rubisco shunt
RD1_2982	PWY-6891	thiazole biosynthesis II (Bacillus)
RD1_2982	PWY-6892	thiazole biosynthesis I (E. coli)
RD1_2982	PWY-6901	superpathway of glucose and xylose degradation
RD1_2982	PWY-7560	methylerythritol phosphate pathway II
RD1_2984	PWY-1042	glycolysis IV (plant cytosol)
RD1_2984	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_2984	PWY-6901	superpathway of glucose and xylose degradation
RD1_2984	PWY-7003	glycerol degradation to butanol
RD1_2990	PWY-5642	2,4-dinitrotoluene degradation
RD1_2990	PWY-6373	acrylate degradation
RD1_2995	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RD1_2995	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RD1_2998	PWY-6700	queuosine biosynthesis
RD1_3008	PWY-1042	glycolysis IV (plant cytosol)
RD1_3008	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_3008	PWY-6886	1-butanol autotrophic biosynthesis
RD1_3008	PWY-6901	superpathway of glucose and xylose degradation
RD1_3008	PWY-7003	glycerol degradation to butanol
RD1_3015	PWY-6936	seleno-amino acid biosynthesis
RD1_3015	PWY-7274	D-cycloserine biosynthesis
RD1_3039	PWY-5367	petroselinate biosynthesis
RD1_3039	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RD1_3039	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RD1_3039	PWY-5989	stearate biosynthesis II (bacteria and plants)
RD1_3039	PWY-5994	palmitate biosynthesis I (animals and fungi)
RD1_3039	PWY-6113	superpathway of mycolate biosynthesis
RD1_3039	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RD1_3039	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RD1_3039	PWY-6951	RD1_3039
RD1_3039	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
RD1_3039	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_3039	PWYG-321	mycolate biosynthesis
RD1_3040	PWY-4381	fatty acid biosynthesis initiation I
RD1_3040	PWY-6799	fatty acid biosynthesis (plant mitochondria)
RD1_3040	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_3087	PWY-6164	3-dehydroquinate biosynthesis I
RD1_3088	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RD1_3111	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RD1_3111	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RD1_3111	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_3111	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3111	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RD1_3111	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RD1_3111	PWY-7205	CMP phosphorylation
RD1_3111	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RD1_3111	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3111	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RD1_3111	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3111	PWY-7224	purine deoxyribonucleosides salvage
RD1_3111	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_3111	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RD1_3118	PWY-5988	wound-induced proteolysis I
RD1_3118	PWY-6018	seed germination protein turnover
RD1_3130	PWY-40	putrescine biosynthesis I
RD1_3130	PWY-6305	putrescine biosynthesis IV
RD1_3131	PWY-40	putrescine biosynthesis I
RD1_3131	PWY-6305	putrescine biosynthesis IV
RD1_3142	PWY-1042	glycolysis IV (plant cytosol)
RD1_3142	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_3142	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RD1_3142	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_3142	PWY-5723	Rubisco shunt
RD1_3142	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_3142	PWY-6886	1-butanol autotrophic biosynthesis
RD1_3142	PWY-6901	superpathway of glucose and xylose degradation
RD1_3142	PWY-7003	glycerol degradation to butanol
RD1_3142	PWY-7124	ethylene biosynthesis V (engineered)
RD1_3142	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RD1_3156	PWY-4381	fatty acid biosynthesis initiation I
RD1_3160	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3182	PWY-5101	L-isoleucine biosynthesis II
RD1_3182	PWY-6871	3-methylbutanol biosynthesis
RD1_3188	PWY-5250	methanogenesis from trimethylamine
RD1_3193	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RD1_3193	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_3193	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RD1_3193	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RD1_3193	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3193	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3193	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_3193	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RD1_3198	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RD1_3198	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RD1_3199	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RD1_3199	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RD1_3199	PWY-5989	stearate biosynthesis II (bacteria and plants)
RD1_3199	PWY-6113	superpathway of mycolate biosynthesis
RD1_3199	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RD1_3199	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RD1_3199	PWY-7096	triclosan resistance
RD1_3199	PWYG-321	mycolate biosynthesis
RD1_3205	PWY-5958	acridone alkaloid biosynthesis
RD1_3205	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RD1_3205	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RD1_3209	PWY-5958	acridone alkaloid biosynthesis
RD1_3209	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RD1_3209	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RD1_3215	PWY-6823	molybdenum cofactor biosynthesis
RD1_3218	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RD1_3227	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_3227	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_3228	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3228	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3232	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_3232	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_3232	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_3235	PWY-5686	UMP biosynthesis
RD1_3236	PWY-5686	UMP biosynthesis
RD1_3240	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RD1_3247	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RD1_3247	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RD1_3247	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RD1_3247	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RD1_3249	PWY-5381	pyridine nucleotide cycling (plants)
RD1_3249	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RD1_3249	PWY-6596	adenosine nucleotides degradation I
RD1_3249	PWY-6606	guanosine nucleotides degradation II
RD1_3249	PWY-6607	guanosine nucleotides degradation I
RD1_3249	PWY-6608	guanosine nucleotides degradation III
RD1_3249	PWY-7185	UTP and CTP dephosphorylation I
RD1_3266	PWY-3961	phosphopantothenate biosynthesis II
RD1_3267	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RD1_3267	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
RD1_3269	PWY-3781	aerobic respiration I (cytochrome c)
RD1_3269	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RD1_3269	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RD1_3269	PWY-6692	Fe(II) oxidation
RD1_3298	PWY-4381	fatty acid biosynthesis initiation I
RD1_3298	PWY-5743	3-hydroxypropanoate cycle
RD1_3298	PWY-5744	glyoxylate assimilation
RD1_3298	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_3298	PWY-6679	jadomycin biosynthesis
RD1_3298	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_3304	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RD1_3305	PWY-6749	CMP-legionaminate biosynthesis I
RD1_3306	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RD1_3306	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RD1_3307	PWY-6823	molybdenum cofactor biosynthesis
RD1_3311	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_3320	PWY-6825	phosphatidylcholine biosynthesis V
RD1_3325	PWY-6728	methylaspartate cycle
RD1_3325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_3325	PWY-7118	chitin degradation to ethanol
RD1_3325	PWY-7294	xylose degradation IV
RD1_3325	PWY-7295	L-arabinose degradation IV
RD1_3339	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
RD1_3340	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
RD1_3351	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3351	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3352	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3352	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3355	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3355	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3357	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RD1_3357	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RD1_3357	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RD1_3357	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RD1_3361	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3361	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3363	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RD1_3363	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RD1_3363	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RD1_3364	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3364	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3376	PWY-5750	itaconate biosynthesis
RD1_3376	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_3376	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
RD1_3395	PWY-5676	acetyl-CoA fermentation to butanoate II
RD1_3395	PWY-5741	ethylmalonyl-CoA pathway
RD1_3395	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RD1_3402	PWY-7560	methylerythritol phosphate pathway II
RD1_3407	PWY-6823	molybdenum cofactor biosynthesis
RD1_3409	PWY-5964	guanylyl molybdenum cofactor biosynthesis
RD1_3414	PWY-3781	aerobic respiration I (cytochrome c)
RD1_3414	PWY-4521	arsenite oxidation I (respiratory)
RD1_3414	PWY-6692	Fe(II) oxidation
RD1_3414	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RD1_3427	PWY-5686	UMP biosynthesis
RD1_3429	PWY-5686	UMP biosynthesis
RD1_3435	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3435	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3436	PWY-4041	&gamma;-glutamyl cycle
RD1_3436	PWY-5826	hypoglycin biosynthesis
RD1_3465	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RD1_3465	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RD1_3466	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RD1_3466	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_3466	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_3466	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RD1_3466	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RD1_3466	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RD1_3471	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RD1_3471	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RD1_3476	PWY-181	photorespiration
RD1_3490	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_3490	PWY-5686	UMP biosynthesis
RD1_3490	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RD1_3492	PWY-4381	fatty acid biosynthesis initiation I
RD1_3494	PWY-7199	pyrimidine deoxyribonucleosides salvage
RD1_3497	PWY-3341	L-proline biosynthesis III
RD1_3497	PWY-4981	L-proline biosynthesis II (from arginine)
RD1_3497	PWY-6344	L-ornithine degradation II (Stickland reaction)
RD1_3510	PWY-6123	inosine-5'-phosphate biosynthesis I
RD1_3510	PWY-7234	inosine-5'-phosphate biosynthesis III
RD1_3512	PWY-7399	methylphosphonate degradation II
RD1_3523	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RD1_3523	PWY-6167	flavin biosynthesis II (archaea)
RD1_3523	PWY-6168	flavin biosynthesis III (fungi)
RD1_3533	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_3535	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_3539	PWY-5386	methylglyoxal degradation I
RD1_3610	PWY-6897	thiamin salvage II
RD1_3610	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
RD1_3610	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_3611	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RD1_3611	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RD1_3611	PWY-6897	thiamin salvage II
RD1_3611	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RD1_3611	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RD1_3611	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
RD1_3611	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_3612	PWY-6910	hydroxymethylpyrimidine salvage
RD1_3612	PWY-7356	thiamin salvage IV (yeast)
RD1_3612	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RD1_3613	PWY-6899	base-degraded thiamin salvage
RD1_3613	PWY-7356	thiamin salvage IV (yeast)
RD1_3617	PWY-4261	glycerol degradation I
RD1_3625	PWY-1042	glycolysis IV (plant cytosol)
RD1_3625	PWY-5484	glycolysis II (from fructose 6-phosphate)
RD1_3625	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_3625	PWY-7003	glycerol degradation to butanol
RD1_3631	PWY-4261	glycerol degradation I
RD1_3631	PWY-6118	glycerol-3-phosphate shuttle
RD1_3631	PWY-6952	glycerophosphodiester degradation
RD1_3634	PWY-4261	glycerol degradation I
RD1_3643	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
RD1_3643	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
RD1_3657	PWY-5958	acridone alkaloid biosynthesis
RD1_3657	PWY-6543	4-aminobenzoate biosynthesis
RD1_3657	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RD1_3657	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RD1_3657	PWY-6722	candicidin biosynthesis
RD1_3659	PWY-2201	folate transformations I
RD1_3659	PWY-3841	folate transformations II
RD1_3677	PWY-5028	L-histidine degradation II
RD1_3677	PWY-5030	L-histidine degradation III
RD1_3678	PWY-5028	L-histidine degradation II
RD1_3678	PWY-5030	L-histidine degradation III
RD1_3682	PWY-5028	L-histidine degradation II
RD1_3682	PWY-5030	L-histidine degradation III
RD1_3693	PWY-5101	L-isoleucine biosynthesis II
RD1_3693	PWY-5103	L-isoleucine biosynthesis III
RD1_3693	PWY-5104	L-isoleucine biosynthesis IV
RD1_3693	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_3704	PWY-4261	glycerol degradation I
RD1_3713	PWY-5656	mannosylglycerate biosynthesis I
RD1_3715	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RD1_3760	PWY-4261	glycerol degradation I
RD1_3776	PWY-2723	trehalose degradation V
RD1_3776	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RD1_3776	PWY-5661	GDP-glucose biosynthesis
RD1_3776	PWY-7238	sucrose biosynthesis II
RD1_3776	PWY-7385	1,3-propanediol biosynthesis (engineered)
RD1_3778	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RD1_3778	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
RD1_3793	PWY-5704	urea degradation II
RD1_3795	PWY-5704	urea degradation II
RD1_3797	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
RD1_3797	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
RD1_3800	PWY-5704	urea degradation II
RD1_3806	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
RD1_3806	PWY-3162	L-tryptophan degradation V (side chain pathway)
RD1_3806	PWY-5057	L-valine degradation II
RD1_3806	PWY-5076	L-leucine degradation III
RD1_3806	PWY-5078	L-isoleucine degradation II
RD1_3806	PWY-5079	L-phenylalanine degradation III
RD1_3806	PWY-5082	L-methionine degradation III
RD1_3806	PWY-5480	pyruvate fermentation to ethanol I
RD1_3806	PWY-5486	pyruvate fermentation to ethanol II
RD1_3806	PWY-5751	phenylethanol biosynthesis
RD1_3806	PWY-6028	acetoin degradation
RD1_3806	PWY-6313	serotonin degradation
RD1_3806	PWY-6333	acetaldehyde biosynthesis I
RD1_3806	PWY-6342	noradrenaline and adrenaline degradation
RD1_3806	PWY-6587	pyruvate fermentation to ethanol III
RD1_3806	PWY-6802	salidroside biosynthesis
RD1_3806	PWY-6871	3-methylbutanol biosynthesis
RD1_3806	PWY-7013	L-1,2-propanediol degradation
RD1_3806	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RD1_3806	PWY-7118	chitin degradation to ethanol
RD1_3806	PWY-7396	butanol and isobutanol biosynthesis (engineered)
RD1_3806	PWY-7557	dehydrodiconiferyl alcohol degradation
RD1_3812	PWY-6637	sulfolactate degradation II
RD1_3812	PWY-6643	coenzyme M biosynthesis II
RD1_3815	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RD1_3815	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RD1_3816	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
RD1_3817	PWY-5194	siroheme biosynthesis
RD1_3817	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_3819	PWY-5194	siroheme biosynthesis
RD1_3819	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_3821	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_3826	PWY-6683	sulfate reduction III (assimilatory)
RD1_3831	PWY-5482	pyruvate fermentation to acetate II
RD1_3831	PWY-5485	pyruvate fermentation to acetate IV
RD1_3831	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_3861	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_3861	PWY-7494	choline degradation IV
RD1_3913	PWY-7205	CMP phosphorylation
RD1_3914	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RD1_3916	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RD1_3916	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RD1_3923	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RD1_3923	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RD1_3923	PWY-5989	stearate biosynthesis II (bacteria and plants)
RD1_3923	PWY-5994	palmitate biosynthesis I (animals and fungi)
RD1_3923	PWY-6113	superpathway of mycolate biosynthesis
RD1_3923	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RD1_3923	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RD1_3923	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RD1_3923	PWYG-321	mycolate biosynthesis
RD1_3925	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RD1_3925	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RD1_3925	PWY-5989	stearate biosynthesis II (bacteria and plants)
RD1_3925	PWY-6113	superpathway of mycolate biosynthesis
RD1_3925	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RD1_3925	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RD1_3925	PWY-7096	triclosan resistance
RD1_3925	PWYG-321	mycolate biosynthesis
RD1_3929	PWY-7425	2-chloroacrylate degradation I
RD1_3932	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
RD1_3935	PWY-6123	inosine-5'-phosphate biosynthesis I
RD1_3935	PWY-6124	inosine-5'-phosphate biosynthesis II
RD1_3935	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RD1_3935	PWY-7234	inosine-5'-phosphate biosynthesis III
RD1_3941	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RD1_3941	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RD1_3941	PWY-6936	seleno-amino acid biosynthesis
RD1_3941	PWY-702	L-methionine biosynthesis II
RD1_3961	PWY-5686	UMP biosynthesis
RD1_3973	PWY-1361	benzoyl-CoA degradation I (aerobic)
RD1_3973	PWY-5109	2-methylbutanoate biosynthesis
RD1_3973	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RD1_3973	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RD1_3973	PWY-5177	glutaryl-CoA degradation
RD1_3973	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_3973	PWY-6435	4-hydroxybenzoate biosynthesis V
RD1_3973	PWY-6583	pyruvate fermentation to butanol I
RD1_3973	PWY-6863	pyruvate fermentation to hexanol
RD1_3973	PWY-6883	pyruvate fermentation to butanol II
RD1_3973	PWY-6944	androstenedione degradation
RD1_3973	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RD1_3973	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RD1_3973	PWY-7007	methyl ketone biosynthesis
RD1_3973	PWY-7046	4-coumarate degradation (anaerobic)
RD1_3973	PWY-7094	fatty acid salvage
RD1_3973	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RD1_3973	PWY-735	jasmonic acid biosynthesis
RD1_3973	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RD1_3976	PWY-7183	pyrimidine nucleobases salvage I
RD1_3978	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
RD1_3979	PWY-7181	pyrimidine deoxyribonucleosides degradation
RD1_3980	PWY-6556	pyrimidine ribonucleosides salvage II
RD1_3980	PWY-7181	pyrimidine deoxyribonucleosides degradation
RD1_3980	PWY-7193	pyrimidine ribonucleosides salvage I
RD1_3980	PWY-7199	pyrimidine deoxyribonucleosides salvage
RD1_3989	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RD1_3989	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RD1_3989	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RD1_3991	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_3991	PWY-181	photorespiration
RD1_3991	PWY-2161	folate polyglutamylation
RD1_3991	PWY-2201	folate transformations I
RD1_3991	PWY-3661	glycine betaine degradation I
RD1_3991	PWY-3661-1	glycine betaine degradation II (mammalian)
RD1_3991	PWY-3841	folate transformations II
RD1_3991	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4061	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RD1_4061	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_4061	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RD1_4061	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RD1_4061	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_4061	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RD1_4061	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RD1_4061	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RD1_4068	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4068	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RD1_4068	PWY-6538	caffeine degradation III (bacteria, via demethylation)
RD1_4068	PWY-6596	adenosine nucleotides degradation I
RD1_4068	PWY-6606	guanosine nucleotides degradation II
RD1_4068	PWY-6607	guanosine nucleotides degradation I
RD1_4068	PWY-6608	guanosine nucleotides degradation III
RD1_4068	PWY-6999	theophylline degradation
RD1_4069	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4069	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RD1_4069	PWY-6538	caffeine degradation III (bacteria, via demethylation)
RD1_4069	PWY-6596	adenosine nucleotides degradation I
RD1_4069	PWY-6606	guanosine nucleotides degradation II
RD1_4069	PWY-6607	guanosine nucleotides degradation I
RD1_4069	PWY-6608	guanosine nucleotides degradation III
RD1_4069	PWY-6999	theophylline degradation
RD1_4077	PWY-6840	homoglutathione biosynthesis
RD1_4077	PWY-7255	ergothioneine biosynthesis I (bacteria)
RD1_4084	PWY-6823	molybdenum cofactor biosynthesis
RD1_4086	PWY-5269	cardiolipin biosynthesis II
RD1_4086	PWY-5668	cardiolipin biosynthesis I
RD1_4097	PWY-5532	adenosine nucleotides degradation IV
RD1_4099	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
RD1_4099	PWY-7494	choline degradation IV
RD1_4143	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RD1_4150	PWY-5691	urate degradation to allantoin I
RD1_4150	PWY-7394	urate degradation to allantoin II
RD1_4151	PWY-5691	urate degradation to allantoin I
RD1_4151	PWY-7394	urate degradation to allantoin II
RD1_4152	PWY-5694	allantoin degradation to glyoxylate I
RD1_4152	PWY-5705	allantoin degradation to glyoxylate III
RD1_4160	PWY-1361	benzoyl-CoA degradation I (aerobic)
RD1_4160	PWY-5109	2-methylbutanoate biosynthesis
RD1_4160	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RD1_4160	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
RD1_4160	PWY-5177	glutaryl-CoA degradation
RD1_4160	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RD1_4160	PWY-6435	4-hydroxybenzoate biosynthesis V
RD1_4160	PWY-6583	pyruvate fermentation to butanol I
RD1_4160	PWY-6863	pyruvate fermentation to hexanol
RD1_4160	PWY-6883	pyruvate fermentation to butanol II
RD1_4160	PWY-6944	androstenedione degradation
RD1_4160	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RD1_4160	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RD1_4160	PWY-7007	methyl ketone biosynthesis
RD1_4160	PWY-7046	4-coumarate degradation (anaerobic)
RD1_4160	PWY-7094	fatty acid salvage
RD1_4160	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
RD1_4160	PWY-735	jasmonic acid biosynthesis
RD1_4160	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
RD1_4164	PWY-5194	siroheme biosynthesis
RD1_4164	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RD1_4168	PWY-6683	sulfate reduction III (assimilatory)
RD1_4203	PWY-3821	galactose degradation III
RD1_4203	PWY-6317	galactose degradation I (Leloir pathway)
RD1_4203	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RD1_4203	PWY-6527	stachyose degradation
RD1_4203	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RD1_4203	PWY-7344	UDP-D-galactose biosynthesis
RD1_4207	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
RD1_4207	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
RD1_4234	PWY-1881	formate oxidation to CO<sub>2</sub>
RD1_4234	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4234	PWY-6696	oxalate degradation III
RD1_4235	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RD1_4235	PWY-2161	folate polyglutamylation
RD1_4235	PWY-2201	folate transformations I
RD1_4235	PWY-3841	folate transformations II
RD1_4236	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RD1_4236	PWY-2201	folate transformations I
RD1_4236	PWY-3841	folate transformations II
RD1_4236	PWY-5030	L-histidine degradation III
RD1_4236	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4236	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RD1_4237	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RD1_4237	PWY-2201	folate transformations I
RD1_4237	PWY-3841	folate transformations II
RD1_4237	PWY-5030	L-histidine degradation III
RD1_4237	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4237	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RD1_4244	PWY-6832	2-aminoethylphosphonate degradation II
RD1_4245	PWY-5392	reductive TCA cycle II
RD1_4245	PWY-5537	pyruvate fermentation to acetate V
RD1_4245	PWY-5538	pyruvate fermentation to acetate VI
RD1_4245	PWY-5690	TCA cycle II (plants and fungi)
RD1_4245	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_4245	PWY-6728	methylaspartate cycle
RD1_4245	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_4245	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_4246	PWY-5392	reductive TCA cycle II
RD1_4246	PWY-5537	pyruvate fermentation to acetate V
RD1_4246	PWY-5538	pyruvate fermentation to acetate VI
RD1_4246	PWY-5690	TCA cycle II (plants and fungi)
RD1_4246	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_4246	PWY-6728	methylaspartate cycle
RD1_4246	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RD1_4246	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RD1_4248	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_4248	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RD1_4248	PWY-5913	TCA cycle VI (obligate autotrophs)
RD1_4248	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RD1_4248	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
RD1_4248	PWY-6549	L-glutamine biosynthesis III
RD1_4248	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RD1_4248	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RD1_4248	PWY-7124	ethylene biosynthesis V (engineered)
RD1_4249	PWY-1622	formaldehyde assimilation I (serine pathway)
RD1_4249	PWY-181	photorespiration
RD1_4249	PWY-2161	folate polyglutamylation
RD1_4249	PWY-2201	folate transformations I
RD1_4249	PWY-3661	glycine betaine degradation I
RD1_4249	PWY-3661-1	glycine betaine degradation II (mammalian)
RD1_4249	PWY-3841	folate transformations II
RD1_4249	PWY-5497	purine nucleobases degradation II (anaerobic)
RD1_4250	PWY-381	nitrate reduction II (assimilatory)
RD1_4250	PWY-5675	nitrate reduction V (assimilatory)
RD1_4250	PWY-6549	L-glutamine biosynthesis III
RD1_4250	PWY-6963	ammonia assimilation cycle I
RD1_4250	PWY-6964	ammonia assimilation cycle II