RD1_0003	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_0003	SSF103025	Folate-binding domain
RD1_0005	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
RD1_0005	SSF54292	2Fe-2S ferredoxin-like
RD1_0005	SSF63380	Riboflavin synthase domain-like
RD1_0007	SSF47413	lambda repressor-like DNA-binding domains
RD1_0007	SSF51182	RmlC-like cupins
RD1_0008	SSF46689	Homeodomain-like
RD1_0008	SSF52317	Class I glutamine amidotransferase-like
RD1_0009	SSF103025	Folate-binding domain
RD1_0010	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_0010	SSF103025	Folate-binding domain
RD1_0010	SSF51905	FAD/NAD(P)-binding domain
RD1_0012	SSF51905	FAD/NAD(P)-binding domain
RD1_0012	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0013	SSF53850	Periplasmic binding protein-like II
RD1_0014	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0015	SSF161098	MetI-like
RD1_0016	SSF55120	Pseudouridine synthase
RD1_0017	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_0017	SSF103025	Folate-binding domain
RD1_0017	SSF51905	FAD/NAD(P)-binding domain
RD1_0017	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0018	SSF82282	Homocysteine S-methyltransferase
RD1_0019	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_0019	SSF103025	Folate-binding domain
RD1_0019	SSF51905	FAD/NAD(P)-binding domain
RD1_0019	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0022	SSF47413	lambda repressor-like DNA-binding domains
RD1_0022	SSF51182	RmlC-like cupins
RD1_0024	SSF55781	GAF domain-like
RD1_0025	SSF53901	Thiolase-like
RD1_0026	SSF52091	SpoIIaa-like
RD1_0027	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0028	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_0029	SSF141255	YccV-like
RD1_0031	SSF53955	Lysozyme-like
RD1_0032	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
RD1_0033	SSF46785	"Winged helix" DNA-binding domain
RD1_0033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0034	SSF53383	PLP-dependent transferases
RD1_0035	SSF75304	Amidase signature (AS) enzymes
RD1_0036	SSF51905	FAD/NAD(P)-binding domain
RD1_0037	SSF158997	Trm112p-like
RD1_0038	SSF88697	PUA domain-like
RD1_0039	SSF48452	TPR-like
RD1_0039	SSF52833	Thioredoxin-like
RD1_0041	SSF56219	DNase I-like
RD1_0042	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_0042	SSF52172	CheY-like
RD1_0043	SSF142695	RibA-like
RD1_0044	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_0046	SSF51419	PLP-binding barrel
RD1_0047	SSF56935	Porins
RD1_0049	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_0049	SSF50677	ValRS/IleRS/LeuRS editing domain
RD1_0049	SSF52374	Nucleotidylyl transferase
RD1_0052	SSF48019	post-AAA+ oligomerization domain-like
RD1_0053	SSF47616	GST C-terminal domain-like
RD1_0053	SSF52833	Thioredoxin-like
RD1_0054	SSF160996	HI0933 insert domain-like
RD1_0054	SSF51905	FAD/NAD(P)-binding domain
RD1_0055	SSF50182	Sm-like ribonucleoproteins
RD1_0055	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_0055	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_0056	SSF53067	Actin-like ATPase domain
RD1_0057	SSF46548	alpha-helical ferredoxin
RD1_0058	SSF47616	GST C-terminal domain-like
RD1_0058	SSF52833	Thioredoxin-like
RD1_0059	SSF53955	Lysozyme-like
RD1_0060	SSF51395	FMN-linked oxidoreductases
RD1_0060	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_0060	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
RD1_0061	SSF51316	Mss4-like
RD1_0062	SSF51316	Mss4-like
RD1_0063	SSF46548	alpha-helical ferredoxin
RD1_0063	SSF51971	Nucleotide-binding domain
RD1_0065	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0067	SSF53649	Alkaline phosphatase-like
RD1_0068	SSF103247	TT1751-like
RD1_0069	SSF50182	Sm-like ribonucleoproteins
RD1_0069	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_0069	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_0071	SSF100950	NagB/RpiA/CoA transferase-like
RD1_0072	SSF100950	NagB/RpiA/CoA transferase-like
RD1_0072	SSF46548	alpha-helical ferredoxin
RD1_0074	SSF55103	FAD-linked oxidases, C-terminal domain
RD1_0074	SSF56176	FAD-binding/transporter-associated domain-like
RD1_0078	SSF159594	XCC0632-like
RD1_0079	SSF53383	PLP-dependent transferases
RD1_0080	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_0083	SSF51395	FMN-linked oxidoreductases
RD1_0084	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0085	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_0085	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_0087	SSF52172	CheY-like
RD1_0087	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_0089	SSF53383	PLP-dependent transferases
RD1_0090	SSF53187	Zn-dependent exopeptidases
RD1_0090	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_0091	SSF52374	Nucleotidylyl transferase
RD1_0093	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_0096	SSF52768	Arginase/deacetylase
RD1_0097	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_0098	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0099	SSF51182	RmlC-like cupins
RD1_0100	SSF56266	DmpA/ArgJ-like
RD1_0101	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_0101	SSF52922	TK C-terminal domain-like
RD1_0102	SSF48695	Multiheme cytochromes
RD1_0103	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
RD1_0104	SSF81483	Bacterial photosystem II reaction centre, L and M subunits
RD1_0106	SSF56918	Light-harvesting complex subunits
RD1_0107	SSF56918	Light-harvesting complex subunits
RD1_0109	SSF53807	"Helical backbone" metal receptor
RD1_0110	SSF53807	"Helical backbone" metal receptor
RD1_0111	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0112	SSF50129	GroES-like
RD1_0112	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0113	SSF46785	"Winged helix" DNA-binding domain
RD1_0113	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0114	SSF48576	Terpenoid synthases
RD1_0115	SSF51905	FAD/NAD(P)-binding domain
RD1_0116	SSF159245	AttH-like
RD1_0117	SSF56925	OMPA-like
RD1_0119	SSF48576	Terpenoid synthases
RD1_0120	SSF51905	FAD/NAD(P)-binding domain
RD1_0122	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0123	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0123	SSF53300	vWA-like
RD1_0124	SSF53474	alpha/beta-Hydrolases
RD1_0126	SSF46626	Cytochrome c
RD1_0127	SSF53383	PLP-dependent transferases
RD1_0129	SSF47240	Ferritin-like
RD1_0133	SSF50346	PRC-barrel domain
RD1_0133	SSF81490	Photosystem II reaction centre subunit H, transmembrane region
RD1_0134	SSF103473	MFS general substrate transporter
RD1_0135	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0136	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0138	SSF53807	"Helical backbone" metal receptor
RD1_0139	SSF53807	"Helical backbone" metal receptor
RD1_0142	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_0143	SSF46689	Homeodomain-like
RD1_0143	SSF55785	PYP-like sensor domain (PAS domain)
RD1_0145	SSF103473	MFS general substrate transporter
RD1_0146	SSF51905	FAD/NAD(P)-binding domain
RD1_0147	SSF55811	Nudix
RD1_0148	SSF53955	Lysozyme-like
RD1_0151	SSF160544	EscU C-terminal domain-like
RD1_0154	SSF53098	Ribonuclease H-like
RD1_0155	SSF46689	Homeodomain-like
RD1_0156	SSF56935	Porins
RD1_0157	SSF46689	Homeodomain-like
RD1_0158	SSF53098	Ribonuclease H-like
RD1_0160	SSF64518	Phase 1 flagellin
RD1_0161	SSF140566	FlgN-like
RD1_0165	SSF51905	FAD/NAD(P)-binding domain
RD1_0167	SSF161098	MetI-like
RD1_0168	SSF161098	MetI-like
RD1_0169	SSF50331	MOP-like
RD1_0169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0170	SSF53850	Periplasmic binding protein-like II
RD1_0171	SSF46785	"Winged helix" DNA-binding domain
RD1_0171	SSF48008	GntR ligand-binding domain-like
RD1_0172	SSF53383	PLP-dependent transferases
RD1_0173	SSF50331	MOP-like
RD1_0173	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0175	SSF53850	Periplasmic binding protein-like II
RD1_0178	SSF54909	Dimeric alpha+beta barrel
RD1_0179	SSF161098	MetI-like
RD1_0180	SSF161098	MetI-like
RD1_0181	SSF47090	PGBD-like
RD1_0181	SSF53955	Lysozyme-like
RD1_0182	SSF47616	GST C-terminal domain-like
RD1_0182	SSF52833	Thioredoxin-like
RD1_0183	SSF50249	Nucleic acid-binding proteins
RD1_0184	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0185	SSF53187	Zn-dependent exopeptidases
RD1_0185	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_0189	SSF51161	Trimeric LpxA-like enzymes
RD1_0190	SSF102405	MCP/YpsA-like
RD1_0191	SSF52833	Thioredoxin-like
RD1_0192	SSF102114	Radical SAM enzymes
RD1_0195	SSF56784	HAD-like
RD1_0196	SSF53383	PLP-dependent transferases
RD1_0197	SSF143548	Serine metabolism enzymes domain
RD1_0197	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0197	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_0197	SSF55021	ACT-like
RD1_0198	SSF50129	GroES-like
RD1_0198	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0199	SSF53383	PLP-dependent transferases
RD1_0200	SSF47413	lambda repressor-like DNA-binding domains
RD1_0200	SSF51182	RmlC-like cupins
RD1_0201	SSF53901	Thiolase-like
RD1_0202	SSF56112	Protein kinase-like (PK-like)
RD1_0203	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0204	SSF46946	S13-like H2TH domain
RD1_0204	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_0204	SSF81624	N-terminal domain of MutM-like DNA repair proteins
RD1_0205	SSF52096	ClpP/crotonase
RD1_0207	SSF46992	Ribosomal protein S20
RD1_0208	SSF48295	TrpR-like
RD1_0208	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0209	SSF55979	DNA clamp
RD1_0210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0212	SSF54211	Ribosomal protein S5 domain 2-like
RD1_0212	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0212	SSF56719	Type II DNA topoisomerase
RD1_0213	SSF52833	Thioredoxin-like
RD1_0215	SSF102114	Radical SAM enzymes
RD1_0215	SSF47781	RuvA domain 2-like
RD1_0216	SSF52141	Uracil-DNA glycosylase-like
RD1_0217	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0217	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0218	SSF51569	Aldolase
RD1_0219	SSF51182	RmlC-like cupins
RD1_0220	SSF53613	Ribokinase-like
RD1_0221	SSF52467	DHS-like NAD/FAD-binding domain
RD1_0221	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_0222	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0222	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0223	SSF51658	Xylose isomerase-like
RD1_0224	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0224	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0225	SSF51206	cAMP-binding domain-like
RD1_0226	SSF52016	LeuD/IlvD-like
RD1_0227	SSF56219	DNase I-like
RD1_0228	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_0229	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_0231	SSF53850	Periplasmic binding protein-like II
RD1_0232	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_0234	SSF47413	lambda repressor-like DNA-binding domains
RD1_0234	SSF53822	Periplasmic binding protein-like I
RD1_0237	SSF46785	"Winged helix" DNA-binding domain
RD1_0238	SSF51905	FAD/NAD(P)-binding domain
RD1_0238	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0243	SSF160467	PH0987 N-terminal domain-like
RD1_0243	SSF50891	Cyclophilin-like
RD1_0244	SSF50891	Cyclophilin-like
RD1_0245	SSF88713	Glycoside hydrolase/deacetylase
RD1_0246	SSF47741	CO dehydrogenase ISP C-domain like
RD1_0246	SSF54292	2Fe-2S ferredoxin-like
RD1_0247	SSF56003	Molybdenum cofactor-binding domain
RD1_0248	SSF46689	Homeodomain-like
RD1_0249	SSF46689	Homeodomain-like
RD1_0250	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_0250	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_0251	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0257	SSF117143	Flagellar hook protein flgE
RD1_0258	SSF117143	Flagellar hook protein flgE
RD1_0259	SSF51269	AFP III-like domain
RD1_0263	SSF46689	Homeodomain-like
RD1_0264	SSF53098	Ribonuclease H-like
RD1_0266	SSF101801	Surface presentation of antigens (SPOA)
RD1_0272	SSF158791	MgtE N-terminal domain-like
RD1_0276	SSF53098	Ribonuclease H-like
RD1_0277	SSF50331	MOP-like
RD1_0277	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0278	SSF161098	MetI-like
RD1_0279	SSF161098	MetI-like
RD1_0280	SSF53850	Periplasmic binding protein-like II
RD1_0281	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_0281	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0282	SSF69118	AhpD-like
RD1_0283	SSF69118	AhpD-like
RD1_0284	SSF51905	FAD/NAD(P)-binding domain
RD1_0285	SSF103473	MFS general substrate transporter
RD1_0287	SSF52096	ClpP/crotonase
RD1_0288	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0290	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
RD1_0291	SSF56655	Carbohydrate phosphatase
RD1_0295	SSF52833	Thioredoxin-like
RD1_0297	SSF48150	DNA-glycosylase
RD1_0297	SSF55811	Nudix
RD1_0298	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0300	SSF53098	Ribonuclease H-like
RD1_0303	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_0304	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_0306	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0306	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0308	SSF51695	PLC-like phosphodiesterases
RD1_0310	SSF54913	GlnB-like
RD1_0312	SSF53056	beta-carbonic anhydrase, cab
RD1_0314	SSF53187	Zn-dependent exopeptidases
RD1_0315	SSF54001	Cysteine proteinases
RD1_0317	SSF56672	DNA/RNA polymerases
RD1_0318	SSF46689	Homeodomain-like
RD1_0318	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_0320	SSF53474	alpha/beta-Hydrolases
RD1_0322	SSF56784	HAD-like
RD1_0323	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0324	SSF53474	alpha/beta-Hydrolases
RD1_0325	SSF103473	MFS general substrate transporter
RD1_0326	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0327	SSF53244	MurD-like peptide ligases, peptide-binding domain
RD1_0327	SSF53623	MurD-like peptide ligases, catalytic domain
RD1_0328	SSF52096	ClpP/crotonase
RD1_0331	SSF51206	cAMP-binding domain-like
RD1_0331	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0331	SSF90123	ABC transporter transmembrane region
RD1_0332	SSF143975	IlvD/EDD N-terminal domain-like
RD1_0332	SSF52016	LeuD/IlvD-like
RD1_0333	SSF50156	PDZ domain-like
RD1_0333	SSF52096	ClpP/crotonase
RD1_0334	SSF51261	Duplicated hybrid motif
RD1_0335	SSF53649	Alkaline phosphatase-like
RD1_0335	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
RD1_0336	SSF89550	PHP domain-like
RD1_0339	SSF53098	Ribonuclease H-like
RD1_0340	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0349	SSF47807	5' to 3' exonuclease, C-terminal subdomain
RD1_0349	SSF53098	Ribonuclease H-like
RD1_0349	SSF56672	DNA/RNA polymerases
RD1_0349	SSF88723	PIN domain-like
RD1_0350	SSF51658	Xylose isomerase-like
RD1_0353	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0355	SSF52317	Class I glutamine amidotransferase-like
RD1_0356	SSF52317	Class I glutamine amidotransferase-like
RD1_0357	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_0357	SSF52172	CheY-like
RD1_0357	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0359	SSF46785	"Winged helix" DNA-binding domain
RD1_0359	SSF47819	HRDC-like
RD1_0359	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0361	SSF103473	MFS general substrate transporter
RD1_0362	SSF55166	Hedgehog/DD-peptidase
RD1_0364	SSF50956	Thermostable phytase (3-phytase)
RD1_0366	SSF110916	Peptidyl-tRNA hydrolase domain-like
RD1_0367	SSF53098	Ribonuclease H-like
RD1_0368	SSF53697	SIS domain
RD1_0368	SSF54631	CBS-domain pair
RD1_0371	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0372	SSF69754	Ribosome binding protein Y (YfiA homologue)
RD1_0373	SSF55804	Phoshotransferase/anion transport protein
RD1_0374	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0375	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0376	SSF56655	Carbohydrate phosphatase
RD1_0377	SSF51197	Clavaminate synthase-like
RD1_0378	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RD1_0378	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RD1_0378	SSF53067	Actin-like ATPase domain
RD1_0379	SSF46565	Chaperone J-domain
RD1_0379	SSF49493	HSP40/DnaJ peptide-binding domain
RD1_0379	SSF57938	DnaJ/Hsp40 cysteine-rich domain
RD1_0382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0382	SSF81767	Pre-protein crosslinking domain of SecA
RD1_0382	SSF81886	Helical scaffold and wing domains of SecA
RD1_0383	SSF109998	Triger factor/SurA peptide-binding domain-like
RD1_0383	SSF54534	FKBP-like
RD1_0384	SSF56266	DmpA/ArgJ-like
RD1_0385	SSF55811	Nudix
RD1_0386	SSF50447	Translation proteins
RD1_0386	SSF52156	Initiation factor IF2/eIF5b, domain 3
RD1_0386	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0387	SSF55315	L30e-like
RD1_0387	SSF64376	YlxR-like
RD1_0388	SSF47794	Rad51 N-terminal domain-like
RD1_0388	SSF50249	Nucleic acid-binding proteins
RD1_0388	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RD1_0388	SSF69705	Transcription factor NusA, N-terminal domain
RD1_0389	SSF74942	YhbC-like, C-terminal domain
RD1_0389	SSF75420	YhbC-like, N-terminal domain
RD1_0390	SSF53850	Periplasmic binding protein-like II
RD1_0391	SSF53474	alpha/beta-Hydrolases
RD1_0392	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0393	SSF46785	"Winged helix" DNA-binding domain
RD1_0395	SSF56317	Carbon-nitrogen hydrolase
RD1_0396	SSF52833	Thioredoxin-like
RD1_0398	SSF53271	PRTase-like
RD1_0400	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0401	SSF53800	Chelatase
RD1_0402	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_0403	SSF55797	PR-1-like
RD1_0404	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_0405	SSF81324	Voltage-gated potassium channels
RD1_0406	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0407	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0407	SSF90123	ABC transporter transmembrane region
RD1_0408	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0408	SSF90123	ABC transporter transmembrane region
RD1_0409	SSF81301	Nucleotidyltransferase
RD1_0409	SSF81891	Poly A polymerase C-terminal region-like
RD1_0410	SSF55811	Nudix
RD1_0411	SSF118352	HSP33 redox switch-like
RD1_0411	SSF64397	Hsp33 domain
RD1_0412	SSF55811	Nudix
RD1_0413	SSF52172	CheY-like
RD1_0413	SSF81606	PP2C-like
RD1_0414	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
RD1_0415	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0416	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_0416	SSF55021	ACT-like
RD1_0417	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_0417	SSF69864	Argininosuccinate synthetase, C-terminal domain
RD1_0418	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0419	SSF55068	Peptide methionine sulfoxide reductase
RD1_0420	SSF53613	Ribokinase-like
RD1_0421	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0421	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_0421	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_0423	SSF48334	DNA repair protein MutS, domain III
RD1_0423	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0423	SSF53150	DNA repair protein MutS, domain II
RD1_0423	SSF55271	DNA repair protein MutS, domain I
RD1_0424	SSF51064	Head domain of nucleotide exchange factor GrpE
RD1_0424	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
RD1_0425	SSF46785	"Winged helix" DNA-binding domain
RD1_0425	SSF55781	GAF domain-like
RD1_0426	SSF54211	Ribosomal protein S5 domain 2-like
RD1_0426	SSF55666	Ribonuclease PH domain 2-like
RD1_0427	SSF52972	ITPase-like
RD1_0428	SSF102114	Radical SAM enzymes
RD1_0429	SSF109709	KorB DNA-binding domain-like
RD1_0429	SSF110849	ParB/Sulfiredoxin
RD1_0430	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0431	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0432	SSF51905	FAD/NAD(P)-binding domain
RD1_0433	SSF103025	Folate-binding domain
RD1_0433	SSF116878	TrmE connector domain
RD1_0433	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0434	SSF50249	Nucleic acid-binding proteins
RD1_0434	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0434	SSF68912	Rho N-terminal domain-like
RD1_0437	SSF52972	ITPase-like
RD1_0438	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0438	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_0439	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0440	SSF53098	Ribonuclease H-like
RD1_0441	SSF54611	SecB-like
RD1_0444	SSF54427	NTF2-like
RD1_0446	SSF160443	SMR domain-like
RD1_0447	SSF103473	MFS general substrate transporter
RD1_0448	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0450	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_0451	SSF52833	Thioredoxin-like
RD1_0452	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0452	SSF52980	Restriction endonuclease-like
RD1_0453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0454	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0455	SSF56112	Protein kinase-like (PK-like)
RD1_0456	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0457	SSF55785	PYP-like sensor domain (PAS domain)
RD1_0460	SSF52833	Thioredoxin-like
RD1_0461	SSF52172	CheY-like
RD1_0463	SSF109604	HD-domain/PDEase-like
RD1_0464	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0465	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0465	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_0466	SSF158587	Jann4075-like
RD1_0467	SSF88697	PUA domain-like
RD1_0468	SSF54909	Dimeric alpha+beta barrel
RD1_0469	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_0469	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0470	SSF53067	Actin-like ATPase domain
RD1_0471	SSF69618	HemD-like
RD1_0473	SSF48452	TPR-like
RD1_0474	SSF47413	lambda repressor-like DNA-binding domains
RD1_0476	SSF52096	ClpP/crotonase
RD1_0477	SSF49842	TNF-like
RD1_0479	SSF51120	beta-Roll
RD1_0483	SSF51197	Clavaminate synthase-like
RD1_0484	SSF51182	RmlC-like cupins
RD1_0486	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0488	SSF53822	Periplasmic binding protein-like I
RD1_0490	SSF47413	lambda repressor-like DNA-binding domains
RD1_0490	SSF53822	Periplasmic binding protein-like I
RD1_0492	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_0493	SSF52833	Thioredoxin-like
RD1_0496	SSF82153	FAS1 domain
RD1_0499	SSF56219	DNase I-like
RD1_0501	SSF55073	Nucleotide cyclase
RD1_0502	SSF51658	Xylose isomerase-like
RD1_0503	SSF51569	Aldolase
RD1_0504	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0505	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_0505	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_0506	SSF51430	NAD(P)-linked oxidoreductase
RD1_0507	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_0508	SSF54909	Dimeric alpha+beta barrel
RD1_0509	SSF52096	ClpP/crotonase
RD1_0510	SSF100950	NagB/RpiA/CoA transferase-like
RD1_0511	SSF51430	NAD(P)-linked oxidoreductase
RD1_0512	SSF51905	FAD/NAD(P)-binding domain
RD1_0512	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0513	SSF51182	RmlC-like cupins
RD1_0514	SSF50129	GroES-like
RD1_0514	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0515	SSF46689	Homeodomain-like
RD1_0515	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_0517	SSF50331	MOP-like
RD1_0517	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0518	SSF161098	MetI-like
RD1_0519	SSF161098	MetI-like
RD1_0521	SSF53850	Periplasmic binding protein-like II
RD1_0522	SSF48452	TPR-like
RD1_0522	SSF48695	Multiheme cytochromes
RD1_0525	SSF48452	TPR-like
RD1_0525	SSF53300	vWA-like
RD1_0526	SSF53300	vWA-like
RD1_0528	SSF53300	vWA-like
RD1_0529	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0530	SSF56784	HAD-like
RD1_0531	SSF53649	Alkaline phosphatase-like
RD1_0532	SSF55961	Bet v1-like
RD1_0533	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_0534	SSF52821	Rhodanese/Cell cycle control phosphatase
RD1_0535	SSF51905	FAD/NAD(P)-binding domain
RD1_0535	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0536	SSF51182	RmlC-like cupins
RD1_0537	SSF102215	Creatininase
RD1_0538	SSF55811	Nudix
RD1_0540	SSF53822	Periplasmic binding protein-like I
RD1_0543	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0544	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0545	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_0546	SSF56801	Acetyl-CoA synthetase-like
RD1_0548	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_0548	SSF52922	TK C-terminal domain-like
RD1_0549	SSF48576	Terpenoid synthases
RD1_0550	SSF116842	XseB-like
RD1_0551	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_0551	SSF52172	CheY-like
RD1_0552	SSF46785	"Winged helix" DNA-binding domain
RD1_0553	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RD1_0554	SSF54427	NTF2-like
RD1_0555	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_0556	SSF103263	Chorismate synthase, AroC
RD1_0557	SSF53850	Periplasmic binding protein-like II
RD1_0558	SSF161098	MetI-like
RD1_0560	SSF52121	Lumazine synthase
RD1_0561	SSF50475	FMN-binding split barrel
RD1_0562	SSF47616	GST C-terminal domain-like
RD1_0562	SSF52833	Thioredoxin-like
RD1_0563	SSF50022	ISP domain
RD1_0564	SSF81342	Transmembrane di-heme cytochromes
RD1_0564	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
RD1_0565	SSF46626	Cytochrome c
RD1_0566	SSF103473	MFS general substrate transporter
RD1_0568	SSF53383	PLP-dependent transferases
RD1_0569	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0573	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0575	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0578	SSF64518	Phase 1 flagellin
RD1_0580	SSF64518	Phase 1 flagellin
RD1_0581	SSF117143	Flagellar hook protein flgE
RD1_0583	SSF103088	OmpA-like
RD1_0584	SSF52821	Rhodanese/Cell cycle control phosphatase
RD1_0585	SSF52499	Isochorismatase-like hydrolases
RD1_0586	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
RD1_0586	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
RD1_0592	SSF111369	HlyD-like secretion proteins
RD1_0593	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0593	SSF90123	ABC transporter transmembrane region
RD1_0594	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0594	SSF90123	ABC transporter transmembrane region
RD1_0595	SSF49899	Concanavalin A-like lectins/glucanases
RD1_0595	SSF51120	beta-Roll
RD1_0596	SSF55068	Peptide methionine sulfoxide reductase
RD1_0597	SSF51316	Mss4-like
RD1_0599	SSF52833	Thioredoxin-like
RD1_0600	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0601	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_0603	SSF47729	IHF-like DNA-binding proteins
RD1_0604	SSF53167	Purine and uridine phosphorylases
RD1_0605	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_0605	SSF51556	Metallo-dependent hydrolases
RD1_0606	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_0607	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_0607	SSF103025	Folate-binding domain
RD1_0607	SSF51905	FAD/NAD(P)-binding domain
RD1_0607	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0609	SSF53639	AraD/HMP-PK domain-like
RD1_0611	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_0611	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_0612	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0612	SSF52210	Succinyl-CoA synthetase domains
RD1_0612	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_0613	SSF52096	ClpP/crotonase
RD1_0614	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0616	SSF53732	Aconitase iron-sulfur domain
RD1_0618	SSF50182	Sm-like ribonucleoproteins
RD1_0618	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_0618	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_0620	SSF81301	Nucleotidyltransferase
RD1_0621	SSF75217	alpha/beta knot
RD1_0625	SSF55103	FAD-linked oxidases, C-terminal domain
RD1_0625	SSF56176	FAD-binding/transporter-associated domain-like
RD1_0626	SSF55103	FAD-linked oxidases, C-terminal domain
RD1_0626	SSF56176	FAD-binding/transporter-associated domain-like
RD1_0627	SSF54862	4Fe-4S ferredoxins
RD1_0628	SSF50494	Trypsin-like serine proteases
RD1_0629	SSF49764	HSP20-like chaperones
RD1_0631	SSF53822	Periplasmic binding protein-like I
RD1_0632	SSF51905	FAD/NAD(P)-binding domain
RD1_0633	SSF53720	ALDH-like
RD1_0634	SSF52833	Thioredoxin-like
RD1_0635	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0636	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_0637	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
RD1_0637	SSF50249	Nucleic acid-binding proteins
RD1_0637	SSF54211	Ribosomal protein S5 domain 2-like
RD1_0637	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
RD1_0637	SSF55666	Ribonuclease PH domain 2-like
RD1_0639	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_0642	SSF47060	S15/NS1 RNA-binding domain
RD1_0647	SSF55120	Pseudouridine synthase
RD1_0649	SSF89919	Ribosome-binding factor A, RbfA
RD1_0650	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0650	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0653	SSF48013	NusB-like
RD1_0653	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0655	SSF52335	Methylglyoxal synthase-like
RD1_0655	SSF53927	Cytidine deaminase-like
RD1_0658	SSF63411	LuxS/MPP-like metallohydrolase
RD1_0659	SSF63411	LuxS/MPP-like metallohydrolase
RD1_0660	SSF53720	ALDH-like
RD1_0661	SSF51569	Aldolase
RD1_0662	SSF118116	DNA mismatch repair protein MutL
RD1_0662	SSF54211	Ribosomal protein S5 domain 2-like
RD1_0662	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0663	SSF58113	Apolipoprotein A-I
RD1_0665	SSF51658	Xylose isomerase-like
RD1_0666	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0666	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0667	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0667	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0668	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0668	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0669	SSF53613	Ribokinase-like
RD1_0671	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_0672	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_0672	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0673	SSF51197	Clavaminate synthase-like
RD1_0674	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0674	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_0676	SSF51197	Clavaminate synthase-like
RD1_0679	SSF51604	Enolase C-terminal domain-like
RD1_0679	SSF54826	Enolase N-terminal domain-like
RD1_0682	SSF46785	"Winged helix" DNA-binding domain
RD1_0682	SSF48008	GntR ligand-binding domain-like
RD1_0683	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0684	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_0684	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0685	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0686	SSF143975	IlvD/EDD N-terminal domain-like
RD1_0686	SSF52016	LeuD/IlvD-like
RD1_0688	SSF56529	FAH
RD1_0689	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0689	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_0690	SSF51604	Enolase C-terminal domain-like
RD1_0690	SSF54826	Enolase N-terminal domain-like
RD1_0691	SSF51182	RmlC-like cupins
RD1_0692	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_0692	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_0693	SSF51905	FAD/NAD(P)-binding domain
RD1_0695	SSF103473	MFS general substrate transporter
RD1_0697	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0698	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0698	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_0699	SSF47616	GST C-terminal domain-like
RD1_0699	SSF52833	Thioredoxin-like
RD1_0700	SSF53254	Phosphoglycerate mutase-like
RD1_0702	SSF56801	Acetyl-CoA synthetase-like
RD1_0703	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0708	SSF53822	Periplasmic binding protein-like I
RD1_0709	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0710	SSF56801	Acetyl-CoA synthetase-like
RD1_0711	SSF53474	alpha/beta-Hydrolases
RD1_0715	SSF81324	Voltage-gated potassium channels
RD1_0718	SSF53187	Zn-dependent exopeptidases
RD1_0719	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
RD1_0719	SSF56672	DNA/RNA polymerases
RD1_0720	SSF51366	Ribulose-phoshate binding barrel
RD1_0721	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0721	SSF81923	Double Clp-N motif
RD1_0722	SSF82153	FAS1 domain
RD1_0723	SSF56784	HAD-like
RD1_0725	SSF56524	Oxidoreductase molybdopterin-binding domain
RD1_0737	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0743	SSF46785	"Winged helix" DNA-binding domain
RD1_0743	SSF48008	GntR ligand-binding domain-like
RD1_0744	SSF51569	Aldolase
RD1_0745	SSF53613	Ribokinase-like
RD1_0746	SSF53613	Ribokinase-like
RD1_0747	SSF51905	FAD/NAD(P)-binding domain
RD1_0747	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0748	SSF54285	MoaD/ThiS
RD1_0749	SSF110399	ThiG-like
RD1_0750	SSF51391	Thiamin phosphate synthase
RD1_0751	SSF69572	Activating enzymes of the ubiquitin-like proteins
RD1_0752	SSF53850	Periplasmic binding protein-like II
RD1_0753	SSF48613	Heme oxygenase-like
RD1_0754	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0755	SSF48613	Heme oxygenase-like
RD1_0756	SSF161098	MetI-like
RD1_0758	SSF55909	Pentein
RD1_0759	SSF111369	HlyD-like secretion proteins
RD1_0763	SSF53474	alpha/beta-Hydrolases
RD1_0766	SSF52151	FabD/lysophospholipase-like
RD1_0767	SSF63829	Calcium-dependent phosphotriesterase
RD1_0771	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0772	SSF48592	GroEL equatorial domain-like
RD1_0772	SSF52029	GroEL apical domain-like
RD1_0772	SSF54849	GroEL-intermediate domain like
RD1_0773	SSF50129	GroES-like
RD1_0774	SSF50156	PDZ domain-like
RD1_0774	SSF50494	Trypsin-like serine proteases
RD1_0777	SSF47473	EF-hand
RD1_0783	SSF52091	SpoIIaa-like
RD1_0784	SSF51905	FAD/NAD(P)-binding domain
RD1_0785	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_0789	SSF46785	"Winged helix" DNA-binding domain
RD1_0789	SSF51206	cAMP-binding domain-like
RD1_0790	SSF46785	"Winged helix" DNA-binding domain
RD1_0792	SSF75169	DsrEFH-like
RD1_0796	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0797	SSF53098	Ribonuclease H-like
RD1_0799	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_0800	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0802	SSF53383	PLP-dependent transferases
RD1_0803	SSF52980	Restriction endonuclease-like
RD1_0804	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_0805	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0806	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0810	SSF47413	lambda repressor-like DNA-binding domains
RD1_0813	SSF54506	Diaminopimelate epimerase-like
RD1_0814	SSF102114	Radical SAM enzymes
RD1_0815	SSF54909	Dimeric alpha+beta barrel
RD1_0816	SSF46785	"Winged helix" DNA-binding domain
RD1_0816	SSF51206	cAMP-binding domain-like
RD1_0817	SSF50494	Trypsin-like serine proteases
RD1_0818	SSF53681	Aspartate/glutamate racemase
RD1_0819	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_0820	SSF46785	"Winged helix" DNA-binding domain
RD1_0820	SSF53850	Periplasmic binding protein-like II
RD1_0821	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_0823	SSF51182	RmlC-like cupins
RD1_0826	SSF52467	DHS-like NAD/FAD-binding domain
RD1_0826	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_0828	SSF51905	FAD/NAD(P)-binding domain
RD1_0829	SSF54427	NTF2-like
RD1_0830	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_0834	SSF46785	"Winged helix" DNA-binding domain
RD1_0834	SSF53383	PLP-dependent transferases
RD1_0838	SSF47413	lambda repressor-like DNA-binding domains
RD1_0838	SSF51182	RmlC-like cupins
RD1_0839	SSF53383	PLP-dependent transferases
RD1_0840	SSF53720	ALDH-like
RD1_0841	SSF53067	Actin-like ATPase domain
RD1_0842	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_0843	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_0845	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_0850	SSF56317	Carbon-nitrogen hydrolase
RD1_0851	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_0853	SSF46785	"Winged helix" DNA-binding domain
RD1_0853	SSF48008	GntR ligand-binding domain-like
RD1_0854	SSF53822	Periplasmic binding protein-like I
RD1_0858	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0859	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0863	SSF56634	Heme-dependent catalase-like
RD1_0864	SSF53822	Periplasmic binding protein-like I
RD1_0865	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0868	SSF63829	Calcium-dependent phosphotriesterase
RD1_0869	SSF51120	beta-Roll
RD1_0871	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0875	SSF53300	vWA-like
RD1_0876	SSF53300	vWA-like
RD1_0877	SSF48452	TPR-like
RD1_0879	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_0879	SSF52172	CheY-like
RD1_0881	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_0881	SSF52172	CheY-like
RD1_0881	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_0884	SSF81296	E set domains
RD1_0885	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_0887	SSF50129	GroES-like
RD1_0887	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_0888	SSF53474	alpha/beta-Hydrolases
RD1_0889	SSF46626	Cytochrome c
RD1_0890	SSF50998	Quinoprotein alcohol dehydrogenase-like
RD1_0891	SSF46626	Cytochrome c
RD1_0892	SSF53850	Periplasmic binding protein-like II
RD1_0893	SSF52821	Rhodanese/Cell cycle control phosphatase
RD1_0894	SSF81296	E set domains
RD1_0895	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
RD1_0896	SSF55961	Bet v1-like
RD1_0898	SSF53822	Periplasmic binding protein-like I
RD1_0899	SSF50974	Nitrous oxide reductase, N-terminal domain
RD1_0902	SSF53850	Periplasmic binding protein-like II
RD1_0903	SSF161098	MetI-like
RD1_0904	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0905	SSF69322	Tricorn protease domain 2
RD1_0907	SSF46626	Cytochrome c
RD1_0909	SSF47240	Ferritin-like
RD1_0915	SSF161098	MetI-like
RD1_0916	SSF53850	Periplasmic binding protein-like II
RD1_0918	SSF46955	Putative DNA-binding domain
RD1_0919	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_0920	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_0921	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0922	SSF53807	"Helical backbone" metal receptor
RD1_0924	SSF111352	Ammonium transporter
RD1_0925	SSF46785	"Winged helix" DNA-binding domain
RD1_0925	SSF48008	GntR ligand-binding domain-like
RD1_0927	SSF53720	ALDH-like
RD1_0928	SSF53474	alpha/beta-Hydrolases
RD1_0929	SSF53092	Creatinase/prolidase N-terminal domain
RD1_0929	SSF55920	Creatinase/aminopeptidase
RD1_0932	SSF54197	HIT-like
RD1_0933	SSF74982	Small protein B (SmpB)
RD1_0934	SSF52821	Rhodanese/Cell cycle control phosphatase
RD1_0935	SSF53383	PLP-dependent transferases
RD1_0936	SSF111352	Ammonium transporter
RD1_0937	SSF54913	GlnB-like
RD1_0938	SSF53955	Lysozyme-like
RD1_0938	SSF56601	beta-lactamase/transpeptidase-like
RD1_0941	SSF55298	YjgF-like
RD1_0942	SSF51695	PLC-like phosphodiesterases
RD1_0943	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_0944	SSF55248	PCD-like
RD1_0945	SSF50182	Sm-like ribonucleoproteins
RD1_0945	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_0945	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_0946	SSF52833	Thioredoxin-like
RD1_0947	SSF51905	FAD/NAD(P)-binding domain
RD1_0947	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_0948	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0949	SSF55920	Creatinase/aminopeptidase
RD1_0951	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_0952	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_0953	SSF69118	AhpD-like
RD1_0954	SSF103088	OmpA-like
RD1_0955	SSF46785	"Winged helix" DNA-binding domain
RD1_0955	SSF53850	Periplasmic binding protein-like II
RD1_0957	SSF51395	FMN-linked oxidoreductases
RD1_0957	SSF51905	FAD/NAD(P)-binding domain
RD1_0957	SSF51971	Nucleotide-binding domain
RD1_0960	SSF55811	Nudix
RD1_0961	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_0962	SSF53613	Ribokinase-like
RD1_0963	SSF48150	DNA-glycosylase
RD1_0965	SSF46689	Homeodomain-like
RD1_0965	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
RD1_0965	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
RD1_0967	SSF103088	OmpA-like
RD1_0968	SSF52218	Flavoproteins
RD1_0969	SSF51971	Nucleotide-binding domain
RD1_0969	SSF54373	FAD-linked reductases, C-terminal domain
RD1_0970	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_0971	SSF48435	Bacterial muramidases
RD1_0971	SSF53955	Lysozyme-like
RD1_0972	SSF51569	Aldolase
RD1_0974	SSF54862	4Fe-4S ferredoxins
RD1_0975	SSF50692	ADC-like
RD1_0975	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_0977	SSF52467	DHS-like NAD/FAD-binding domain
RD1_0977	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_0978	SSF46785	"Winged helix" DNA-binding domain
RD1_0978	SSF53383	PLP-dependent transferases
RD1_0979	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0981	SSF53383	PLP-dependent transferases
RD1_0982	SSF53850	Periplasmic binding protein-like II
RD1_0983	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0984	SSF161098	MetI-like
RD1_0988	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_0990	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RD1_0991	SSF46626	Cytochrome c
RD1_0991	SSF50978	WD40 repeat-like
RD1_0992	SSF46785	"Winged helix" DNA-binding domain
RD1_0993	SSF51395	FMN-linked oxidoreductases
RD1_0997	SSF46785	"Winged helix" DNA-binding domain
RD1_0997	SSF48008	GntR ligand-binding domain-like
RD1_0998	SSF52096	ClpP/crotonase
RD1_1000	SSF46785	"Winged helix" DNA-binding domain
RD1_1000	SSF54909	Dimeric alpha+beta barrel
RD1_1001	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_1002	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1003	SSF51604	Enolase C-terminal domain-like
RD1_1003	SSF54826	Enolase N-terminal domain-like
RD1_1004	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RD1_1005	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_1006	SSF158757	SMc04008-like
RD1_1007	SSF50800	PK beta-barrel domain-like
RD1_1007	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_1007	SSF52935	PK C-terminal domain-like
RD1_1009	SSF143034	L35p-like
RD1_1010	SSF74731	Ribosomal protein L20
RD1_1012	SSF46589	tRNA-binding arm
RD1_1012	SSF55681	Class II aaRS and biotin synthetases
RD1_1013	SSF46955	Putative DNA-binding domain
RD1_1013	SSF50249	Nucleic acid-binding proteins
RD1_1013	SSF54991	Anticodon-binding domain of PheRS
RD1_1013	SSF55681	Class II aaRS and biotin synthetases
RD1_1013	SSF56037	PheT/TilS domain
RD1_1015	SSF81330	Gated mechanosensitive channel
RD1_1016	SSF47090	PGBD-like
RD1_1018	SSF50494	Trypsin-like serine proteases
RD1_1020	SSF53067	Actin-like ATPase domain
RD1_1024	SSF53300	vWA-like
RD1_1025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1027	SSF56436	C-type lectin-like
RD1_1031	SSF50022	ISP domain
RD1_1031	SSF55961	Bet v1-like
RD1_1033	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1033	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_1034	SSF46785	"Winged helix" DNA-binding domain
RD1_1034	SSF54909	Dimeric alpha+beta barrel
RD1_1035	SSF52218	Flavoproteins
RD1_1040	SSF50129	GroES-like
RD1_1040	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1041	SSF50129	GroES-like
RD1_1041	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1042	SSF55895	Ribonuclease Rh-like
RD1_1044	SSF55298	YjgF-like
RD1_1045	SSF111304	Recombination protein RecR
RD1_1046	SSF82607	YbaB-like
RD1_1047	SSF48019	post-AAA+ oligomerization domain-like
RD1_1047	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1048	SSF50129	GroES-like
RD1_1048	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1053	SSF46785	"Winged helix" DNA-binding domain
RD1_1053	SSF48008	GntR ligand-binding domain-like
RD1_1054	SSF161098	MetI-like
RD1_1055	SSF161098	MetI-like
RD1_1056	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1057	SSF53850	Periplasmic binding protein-like II
RD1_1059	SSF53850	Periplasmic binding protein-like II
RD1_1060	SSF161098	MetI-like
RD1_1061	SSF50331	MOP-like
RD1_1061	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1062	SSF53254	Phosphoglycerate mutase-like
RD1_1065	SSF55205	EPT/RTPC-like
RD1_1068	SSF53720	ALDH-like
RD1_1071	SSF52788	Phosphotyrosine protein phosphatases I
RD1_1072	SSF48113	Heme-dependent peroxidases
RD1_1074	SSF54427	NTF2-like
RD1_1075	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1077	SSF56935	Porins
RD1_1078	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1079	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1080	SSF52980	Restriction endonuclease-like
RD1_1081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1081	SSF54980	EF-G C-terminal domain-like
RD1_1084	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
RD1_1084	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_1087	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1088	SSF88713	Glycoside hydrolase/deacetylase
RD1_1090	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_1092	SSF53254	Phosphoglycerate mutase-like
RD1_1093	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_1094	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_1095	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_1096	SSF50182	Sm-like ribonucleoproteins
RD1_1096	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_1096	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_1099	SSF161098	MetI-like
RD1_1100	SSF161098	MetI-like
RD1_1101	SSF53850	Periplasmic binding protein-like II
RD1_1102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1103	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1105	SSF51366	Ribulose-phoshate binding barrel
RD1_1106	SSF56801	Acetyl-CoA synthetase-like
RD1_1108	SSF50129	GroES-like
RD1_1108	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1109	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1111	SSF53098	Ribonuclease H-like
RD1_1113	SSF51206	cAMP-binding domain-like
RD1_1113	SSF54631	CBS-domain pair
RD1_1113	SSF81301	Nucleotidyltransferase
RD1_1116	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1117	SSF56801	Acetyl-CoA synthetase-like
RD1_1118	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_1119	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1120	SSF47090	PGBD-like
RD1_1120	SSF53955	Lysozyme-like
RD1_1122	SSF51120	beta-Roll
RD1_1124	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1124	SSF90123	ABC transporter transmembrane region
RD1_1125	SSF56954	Outer membrane efflux proteins (OEP)
RD1_1126	SSF103088	OmpA-like
RD1_1128	SSF51182	RmlC-like cupins
RD1_1129	SSF51161	Trimeric LpxA-like enzymes
RD1_1130	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1131	SSF55331	Tautomerase/MIF
RD1_1132	SSF54427	NTF2-like
RD1_1133	SSF47616	GST C-terminal domain-like
RD1_1133	SSF52833	Thioredoxin-like
RD1_1134	SSF46785	"Winged helix" DNA-binding domain
RD1_1134	SSF53850	Periplasmic binding protein-like II
RD1_1135	SSF46689	Homeodomain-like
RD1_1136	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1143	SSF46689	Homeodomain-like
RD1_1144	SSF53098	Ribonuclease H-like
RD1_1145	SSF56672	DNA/RNA polymerases
RD1_1149	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1150	SSF102114	Radical SAM enzymes
RD1_1152	SSF48613	Heme oxygenase-like
RD1_1153	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1155	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_1155	SSF52172	CheY-like
RD1_1156	SSF158472	HAMP domain-like
RD1_1156	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_1156	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_1159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1160	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_1161	SSF53383	PLP-dependent transferases
RD1_1162	SSF52210	Succinyl-CoA synthetase domains
RD1_1162	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_1163	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1163	SSF52210	Succinyl-CoA synthetase domains
RD1_1164	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1164	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_1165	SSF53383	PLP-dependent transferases
RD1_1166	SSF46565	Chaperone J-domain
RD1_1168	SSF158472	HAMP domain-like
RD1_1168	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_1169	SSF46785	"Winged helix" DNA-binding domain
RD1_1169	SSF53850	Periplasmic binding protein-like II
RD1_1171	SSF51120	beta-Roll
RD1_1174	SSF50022	ISP domain
RD1_1176	SSF50249	Nucleic acid-binding proteins
RD1_1176	SSF55261	GAD domain-like
RD1_1176	SSF55681	Class II aaRS and biotin synthetases
RD1_1177	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1178	SSF52172	CheY-like
RD1_1179	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_1182	SSF55469	FMN-dependent nitroreductase-like
RD1_1183	SSF52768	Arginase/deacetylase
RD1_1185	SSF52374	Nucleotidylyl transferase
RD1_1186	SSF144091	Rhomboid-like
RD1_1188	SSF55021	ACT-like
RD1_1188	SSF81301	Nucleotidyltransferase
RD1_1188	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RD1_1188	SSF81891	Poly A polymerase C-terminal region-like
RD1_1189	SSF53822	Periplasmic binding protein-like I
RD1_1190	SSF53790	Tetrapyrrole methylase
RD1_1191	SSF52980	Restriction endonuclease-like
RD1_1192	SSF52440	PreATP-grasp domain
RD1_1192	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_1193	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1193	SSF54211	Ribosomal protein S5 domain 2-like
RD1_1194	SSF47616	GST C-terminal domain-like
RD1_1194	SSF52833	Thioredoxin-like
RD1_1195	SSF53254	Phosphoglycerate mutase-like
RD1_1196	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1197	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_1197	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_1198	SSF159501	EreA/ChaN-like
RD1_1200	SSF102645	CoaB-like
RD1_1200	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
RD1_1201	SSF51283	dUTPase-like
RD1_1202	SSF69572	Activating enzymes of the ubiquitin-like proteins
RD1_1203	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_1204	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1206	SSF56519	Penicillin binding protein dimerisation domain
RD1_1206	SSF56601	beta-lactamase/transpeptidase-like
RD1_1209	SSF53067	Actin-like ATPase domain
RD1_1210	SSF53850	Periplasmic binding protein-like II
RD1_1211	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
RD1_1211	SSF51569	Aldolase
RD1_1212	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1213	SSF48173	Cryptochrome/photolyase FAD-binding domain
RD1_1214	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
RD1_1215	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1215	SSF56317	Carbon-nitrogen hydrolase
RD1_1216	SSF53474	alpha/beta-Hydrolases
RD1_1217	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1219	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RD1_1219	SSF52374	Nucleotidylyl transferase
RD1_1221	SSF110857	Gamma-glutamyl cyclotransferase-like
RD1_1222	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_1222	SSF103025	Folate-binding domain
RD1_1223	SSF51230	Single hybrid motif
RD1_1225	SSF53383	PLP-dependent transferases
RD1_1227	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1228	SSF52266	SGNH hydrolase
RD1_1229	SSF50249	Nucleic acid-binding proteins
RD1_1232	SSF50249	Nucleic acid-binding proteins
RD1_1234	SSF50814	Lipocalins
RD1_1237	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1242	SSF50800	PK beta-barrel domain-like
RD1_1243	SSF52374	Nucleotidylyl transferase
RD1_1244	SSF56601	beta-lactamase/transpeptidase-like
RD1_1245	SSF158682	TerB-like
RD1_1246	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RD1_1246	SSF52374	Nucleotidylyl transferase
RD1_1252	SSF50475	FMN-binding split barrel
RD1_1253	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1254	SSF46600	C-terminal UvrC-binding domain of UvrB
RD1_1254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1258	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
RD1_1258	SSF56300	Metallo-dependent phosphatases
RD1_1259	SSF55811	Nudix
RD1_1260	SSF55961	Bet v1-like
RD1_1261	SSF53850	Periplasmic binding protein-like II
RD1_1261	SSF55021	ACT-like
RD1_1262	SSF46626	Cytochrome c
RD1_1263	SSF53850	Periplasmic binding protein-like II
RD1_1264	SSF161098	MetI-like
RD1_1265	SSF161098	MetI-like
RD1_1266	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1267	SSF102114	Radical SAM enzymes
RD1_1268	SSF46785	"Winged helix" DNA-binding domain
RD1_1268	SSF51206	cAMP-binding domain-like
RD1_1269	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1270	SSF81442	Cytochrome c oxidase subunit I-like
RD1_1271	SSF46626	Cytochrome c
RD1_1273	SSF46626	Cytochrome c
RD1_1274	SSF54862	4Fe-4S ferredoxins
RD1_1276	SSF55008	HMA, heavy metal-associated domain
RD1_1276	SSF56784	HAD-like
RD1_1276	SSF81653	Calcium ATPase, transduction domain A
RD1_1276	SSF81665	Calcium ATPase, transmembrane domain M
RD1_1278	SSF56601	beta-lactamase/transpeptidase-like
RD1_1279	SSF54736	ClpS-like
RD1_1280	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1281	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1282	SSF102886	Coproporphyrinogen III oxidase
RD1_1283	SSF53850	Periplasmic binding protein-like II
RD1_1283	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
RD1_1284	SSF51726	UROD/MetE-like
RD1_1289	SSF140663	TTHA0068-like
RD1_1291	SSF53850	Periplasmic binding protein-like II
RD1_1292	SSF56176	FAD-binding/transporter-associated domain-like
RD1_1293	SSF51556	Metallo-dependent hydrolases
RD1_1294	SSF55298	YjgF-like
RD1_1298	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1299	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1303	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_1304	SSF143800	L28p-like
RD1_1305	SSF50104	Translation proteins SH3-like domain
RD1_1307	SSF75217	alpha/beta knot
RD1_1308	SSF50346	PRC-barrel domain
RD1_1308	SSF50447	Translation proteins
RD1_1311	SSF54565	Ribosomal protein S16
RD1_1312	SSF48600	Chorismate mutase II
RD1_1313	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1314	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1315	SSF47446	Signal peptide-binding domain
RD1_1315	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1317	SSF46785	"Winged helix" DNA-binding domain
RD1_1317	SSF53850	Periplasmic binding protein-like II
RD1_1318	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1319	SSF46785	"Winged helix" DNA-binding domain
RD1_1322	SSF81336	F1F0 ATP synthase subunit A
RD1_1323	SSF81333	F1F0 ATP synthase subunit C
RD1_1326	SSF46785	"Winged helix" DNA-binding domain
RD1_1326	SSF48008	GntR ligand-binding domain-like
RD1_1327	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1329	SSF47090	PGBD-like
RD1_1329	SSF53955	Lysozyme-like
RD1_1331	SSF53383	PLP-dependent transferases
RD1_1333	SSF52172	CheY-like
RD1_1334	SSF47616	GST C-terminal domain-like
RD1_1334	SSF52833	Thioredoxin-like
RD1_1336	SSF53383	PLP-dependent transferases
RD1_1337	SSF56420	Peptide deformylase
RD1_1338	SSF56420	Peptide deformylase
RD1_1339	SSF50486	FMT C-terminal domain-like
RD1_1339	SSF53328	Formyltransferase
RD1_1341	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RD1_1341	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RD1_1341	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_1342	SSF111369	HlyD-like secretion proteins
RD1_1343	SSF46689	Homeodomain-like
RD1_1345	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_1345	SSF103025	Folate-binding domain
RD1_1345	SSF51905	FAD/NAD(P)-binding domain
RD1_1345	SSF54373	FAD-linked reductases, C-terminal domain
RD1_1347	SSF52266	SGNH hydrolase
RD1_1348	SSF56529	FAH
RD1_1349	SSF141488	YdhA-like
RD1_1351	SSF53098	Ribonuclease H-like
RD1_1352	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1354	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1357	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
RD1_1358	SSF63562	RPB6/omega subunit-like
RD1_1359	SSF109604	HD-domain/PDEase-like
RD1_1359	SSF55021	ACT-like
RD1_1359	SSF81271	TGS-like
RD1_1359	SSF81301	Nucleotidyltransferase
RD1_1362	SSF63892	Pyridoxine 5'-phosphate synthase
RD1_1364	SSF56214	4'-phosphopantetheinyl transferase
RD1_1365	SSF51306	LexA/Signal peptidase
RD1_1366	SSF54768	dsRNA-binding domain-like
RD1_1366	SSF69065	RNase III domain-like
RD1_1367	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1367	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RD1_1369	SSF50249	Nucleic acid-binding proteins
RD1_1369	SSF57863	ArfGap/RecO-like zinc finger
RD1_1371	SSF46689	Homeodomain-like
RD1_1372	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_1372	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_1373	SSF47413	lambda repressor-like DNA-binding domains
RD1_1374	SSF46785	"Winged helix" DNA-binding domain
RD1_1376	SSF53795	PEP carboxykinase-like
RD1_1376	SSF68923	PEP carboxykinase N-terminal domain
RD1_1377	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_1377	SSF52172	CheY-like
RD1_1378	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_1378	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_1379	SSF53795	PEP carboxykinase-like
RD1_1380	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1382	SSF53062	PTS system fructose IIA component-like
RD1_1383	SSF55594	HPr-like
RD1_1384	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RD1_1385	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_1385	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1387	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1387	SSF52467	DHS-like NAD/FAD-binding domain
RD1_1388	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1389	SSF89028	Cobalamin adenosyltransferase-like
RD1_1391	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1393	SSF101904	GyrA/ParC C-terminal domain-like
RD1_1393	SSF56719	Type II DNA topoisomerase
RD1_1394	SSF48264	Cytochrome P450
RD1_1396	SSF50447	Translation proteins
RD1_1396	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RD1_1396	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1397	SSF52317	Class I glutamine amidotransferase-like
RD1_1398	SSF54999	Ribosomal protein S10
RD1_1399	SSF50447	Translation proteins
RD1_1400	SSF52166	Ribosomal protein L4
RD1_1401	SSF54189	Ribosomal proteins S24e, L23 and L15e
RD1_1402	SSF50249	Nucleic acid-binding proteins
RD1_1403	SSF56935	Porins
RD1_1405	SSF50104	Translation proteins SH3-like domain
RD1_1405	SSF50249	Nucleic acid-binding proteins
RD1_1406	SSF54570	Ribosomal protein S19
RD1_1407	SSF54843	Ribosomal protein L22
RD1_1408	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RD1_1408	SSF54821	Ribosomal protein S3 C-terminal domain
RD1_1409	SSF54686	Ribosomal protein L16p/L10e
RD1_1412	SSF51197	Clavaminate synthase-like
RD1_1415	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1416	SSF52768	Arginase/deacetylase
RD1_1418	SSF46561	Ribosomal protein L29 (L29p)
RD1_1419	SSF50249	Nucleic acid-binding proteins
RD1_1420	SSF50193	Ribosomal protein L14
RD1_1421	SSF50104	Translation proteins SH3-like domain
RD1_1422	SSF55282	RL5-like
RD1_1423	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_1424	SSF56047	Ribosomal protein S8
RD1_1425	SSF56053	Ribosomal protein L6
RD1_1426	SSF53137	Translational machinery components
RD1_1428	SSF54211	Ribosomal protein S5 domain 2-like
RD1_1428	SSF54768	dsRNA-binding domain-like
RD1_1429	SSF55129	Ribosomal protein L30p/L7e
RD1_1431	SSF52080	Ribosomal proteins L15p and L18e
RD1_1432	SSF103491	Preprotein translocase SecY subunit
RD1_1433	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1435	SSF46946	S13-like H2TH domain
RD1_1436	SSF53137	Translational machinery components
RD1_1437	SSF47789	C-terminal domain of RNA polymerase alpha subunit
RD1_1437	SSF55257	RBP11-like subunits of RNA polymerase
RD1_1437	SSF56553	Insert subdomain of RNA polymerase alpha subunit
RD1_1438	SSF64263	Prokaryotic ribosomal protein L17
RD1_1439	SSF48019	post-AAA+ oligomerization domain-like
RD1_1439	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1441	SSF55120	Pseudouridine synthase
RD1_1441	SSF55174	Alpha-L RNA-binding motif
RD1_1442	SSF56784	HAD-like
RD1_1443	SSF160909	ATP12-like
RD1_1444	SSF53850	Periplasmic binding protein-like II
RD1_1445	SSF161098	MetI-like
RD1_1446	SSF161098	MetI-like
RD1_1448	SSF53254	Phosphoglycerate mutase-like
RD1_1452	SSF53633	Carbamate kinase-like
RD1_1453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1454	SSF50800	PK beta-barrel domain-like
RD1_1456	SSF141868	EAL domain-like
RD1_1456	SSF55073	Nucleotide cyclase
RD1_1457	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1459	SSF54211	Ribosomal protein S5 domain 2-like
RD1_1464	SSF51905	FAD/NAD(P)-binding domain
RD1_1464	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_1465	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_1465	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_1471	SSF55797	PR-1-like
RD1_1472	SSF55909	Pentein
RD1_1474	SSF56801	Acetyl-CoA synthetase-like
RD1_1479	SSF46785	"Winged helix" DNA-binding domain
RD1_1479	SSF48008	GntR ligand-binding domain-like
RD1_1481	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_1481	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1483	SSF50331	MOP-like
RD1_1483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1484	SSF161098	MetI-like
RD1_1485	SSF161098	MetI-like
RD1_1486	SSF53850	Periplasmic binding protein-like II
RD1_1487	SSF47413	lambda repressor-like DNA-binding domains
RD1_1487	SSF53822	Periplasmic binding protein-like I
RD1_1488	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_1488	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_1489	SSF53850	Periplasmic binding protein-like II
RD1_1490	SSF158472	HAMP domain-like
RD1_1490	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_1490	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_1491	SSF52172	CheY-like
RD1_1493	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_1493	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1493	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
RD1_1494	SSF141130	Acetamidase/Formamidase-like
RD1_1495	SSF51905	FAD/NAD(P)-binding domain
RD1_1495	SSF54373	FAD-linked reductases, C-terminal domain
RD1_1496	SSF56317	Carbon-nitrogen hydrolase
RD1_1497	SSF55931	Glutamine synthetase/guanido kinase
RD1_1498	SSF46689	Homeodomain-like
RD1_1498	SSF53697	SIS domain
RD1_1499	SSF53187	Zn-dependent exopeptidases
RD1_1500	SSF52499	Isochorismatase-like hydrolases
RD1_1501	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1502	SSF53822	Periplasmic binding protein-like I
RD1_1503	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1507	SSF46785	"Winged helix" DNA-binding domain
RD1_1508	SSF52833	Thioredoxin-like
RD1_1510	SSF52833	Thioredoxin-like
RD1_1511	SSF46626	Cytochrome c
RD1_1513	SSF81296	E set domains
RD1_1514	SSF46626	Cytochrome c
RD1_1515	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
RD1_1515	SSF56300	Metallo-dependent phosphatases
RD1_1516	SSF56524	Oxidoreductase molybdopterin-binding domain
RD1_1516	SSF81296	E set domains
RD1_1517	SSF46626	Cytochrome c
RD1_1518	SSF46626	Cytochrome c
RD1_1519	SSF51905	FAD/NAD(P)-binding domain
RD1_1519	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_1520	SSF103247	TT1751-like
RD1_1522	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1523	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1525	SSF53850	Periplasmic binding protein-like II
RD1_1527	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
RD1_1527	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
RD1_1528	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
RD1_1528	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
RD1_1528	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1528	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
RD1_1529	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_1529	SSF51556	Metallo-dependent hydrolases
RD1_1531	SSF46785	"Winged helix" DNA-binding domain
RD1_1532	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
RD1_1532	SSF56176	FAD-binding/transporter-associated domain-like
RD1_1533	SSF47741	CO dehydrogenase ISP C-domain like
RD1_1533	SSF54292	2Fe-2S ferredoxin-like
RD1_1533	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
RD1_1533	SSF56003	Molybdenum cofactor-binding domain
RD1_1535	SSF143631	ApbE-like
RD1_1536	SSF160519	BB2672-like
RD1_1537	SSF160519	BB2672-like
RD1_1544	SSF51120	beta-Roll
RD1_1546	SSF54862	4Fe-4S ferredoxins
RD1_1547	SSF49503	Cupredoxins
RD1_1547	SSF50974	Nitrous oxide reductase, N-terminal domain
RD1_1548	SSF51126	Pectin lyase-like
RD1_1549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1551	SSF160387	NosL/MerB-like
RD1_1552	SSF143631	ApbE-like
RD1_1553	SSF46785	"Winged helix" DNA-binding domain
RD1_1553	SSF51206	cAMP-binding domain-like
RD1_1554	SSF46785	"Winged helix" DNA-binding domain
RD1_1554	SSF51206	cAMP-binding domain-like
RD1_1558	SSF81452	Cytochrome c oxidase subunit III-like
RD1_1559	SSF53300	vWA-like
RD1_1560	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1561	SSF81442	Cytochrome c oxidase subunit I-like
RD1_1562	SSF46626	Cytochrome c
RD1_1563	SSF46626	Cytochrome c
RD1_1564	SSF54862	4Fe-4S ferredoxins
RD1_1565	SSF46626	Cytochrome c
RD1_1565	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
RD1_1566	SSF53790	Tetrapyrrole methylase
RD1_1567	SSF46626	Cytochrome c
RD1_1568	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
RD1_1569	SSF46785	"Winged helix" DNA-binding domain
RD1_1570	SSF46785	"Winged helix" DNA-binding domain
RD1_1571	SSF46785	"Winged helix" DNA-binding domain
RD1_1572	SSF102114	Radical SAM enzymes
RD1_1573	SSF46626	Cytochrome c
RD1_1573	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
RD1_1574	SSF53800	Chelatase
RD1_1576	SSF53383	PLP-dependent transferases
RD1_1577	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1580	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1582	SSF51905	FAD/NAD(P)-binding domain
RD1_1582	SSF54373	FAD-linked reductases, C-terminal domain
RD1_1583	SSF53850	Periplasmic binding protein-like II
RD1_1585	SSF49299	PKD domain
RD1_1586	SSF51430	NAD(P)-linked oxidoreductase
RD1_1587	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RD1_1587	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RD1_1587	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_1588	SSF111369	HlyD-like secretion proteins
RD1_1589	SSF56219	DNase I-like
RD1_1590	SSF52833	Thioredoxin-like
RD1_1591	SSF48557	L-aspartase-like
RD1_1595	SSF50621	Alanine racemase C-terminal domain-like
RD1_1595	SSF51419	PLP-binding barrel
RD1_1599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1601	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RD1_1602	SSF50475	FMN-binding split barrel
RD1_1603	SSF51905	FAD/NAD(P)-binding domain
RD1_1603	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_1605	SSF161084	MAPEG domain-like
RD1_1607	SSF161084	MAPEG domain-like
RD1_1608	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RD1_1608	SSF51230	Single hybrid motif
RD1_1608	SSF52777	CoA-dependent acyltransferases
RD1_1609	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_1611	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1611	SSF52210	Succinyl-CoA synthetase domains
RD1_1615	SSF52210	Succinyl-CoA synthetase domains
RD1_1615	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_1617	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1617	SSF56327	LDH C-terminal domain-like
RD1_1620	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_1623	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_1625	SSF53300	vWA-like
RD1_1626	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RD1_1627	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RD1_1628	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
RD1_1628	SSF51905	FAD/NAD(P)-binding domain
RD1_1628	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
RD1_1630	SSF46548	alpha-helical ferredoxin
RD1_1630	SSF54292	2Fe-2S ferredoxin-like
RD1_1634	SSF53167	Purine and uridine phosphorylases
RD1_1635	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
RD1_1635	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_1636	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RD1_1637	SSF50129	GroES-like
RD1_1637	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1638	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_1638	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
RD1_1639	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1645	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1647	SSF53822	Periplasmic binding protein-like I
RD1_1648	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1649	SSF53067	Actin-like ATPase domain
RD1_1650	SSF110836	Hypothetical protein SAV1430
RD1_1650	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RD1_1652	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_1653	SSF54975	Acylphosphatase/BLUF domain-like
RD1_1654	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RD1_1659	SSF102114	Radical SAM enzymes
RD1_1661	SSF51569	Aldolase
RD1_1663	SSF52141	Uracil-DNA glycosylase-like
RD1_1666	SSF52821	Rhodanese/Cell cycle control phosphatase
RD1_1668	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1669	SSF74650	Galactose mutarotase-like
RD1_1669	SSF81296	E set domains
RD1_1671	SSF48452	TPR-like
RD1_1673	SSF89796	CoA-transferase family III (CaiB/BaiF)
RD1_1674	SSF52467	DHS-like NAD/FAD-binding domain
RD1_1674	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_1676	SSF53383	PLP-dependent transferases
RD1_1677	SSF53671	Aspartate/ornithine carbamoyltransferase
RD1_1678	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1679	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1680	SSF143800	L28p-like
RD1_1682	SSF110087	DR1885-like metal-binding protein
RD1_1683	SSF52467	DHS-like NAD/FAD-binding domain
RD1_1684	SSF56317	Carbon-nitrogen hydrolase
RD1_1685	SSF50249	Nucleic acid-binding proteins
RD1_1686	SSF52972	ITPase-like
RD1_1688	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_1689	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1691	SSF46785	"Winged helix" DNA-binding domain
RD1_1696	SSF102114	Radical SAM enzymes
RD1_1697	SSF102114	Radical SAM enzymes
RD1_1698	SSF51695	PLC-like phosphodiesterases
RD1_1700	SSF46689	Homeodomain-like
RD1_1700	SSF52317	Class I glutamine amidotransferase-like
RD1_1701	SSF51905	FAD/NAD(P)-binding domain
RD1_1701	SSF54373	FAD-linked reductases, C-terminal domain
RD1_1704	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_1704	SSF103025	Folate-binding domain
RD1_1704	SSF51905	FAD/NAD(P)-binding domain
RD1_1705	SSF103025	Folate-binding domain
RD1_1707	SSF103473	MFS general substrate transporter
RD1_1709	SSF141868	EAL domain-like
RD1_1709	SSF55073	Nucleotide cyclase
RD1_1709	SSF55785	PYP-like sensor domain (PAS domain)
RD1_1713	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_1713	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_1717	SSF53850	Periplasmic binding protein-like II
RD1_1719	SSF46785	"Winged helix" DNA-binding domain
RD1_1719	SSF64288	Chorismate lyase-like
RD1_1720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1720	SSF90123	ABC transporter transmembrane region
RD1_1725	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_1725	SSF51556	Metallo-dependent hydrolases
RD1_1726	SSF53697	SIS domain
RD1_1727	SSF46785	"Winged helix" DNA-binding domain
RD1_1727	SSF64288	Chorismate lyase-like
RD1_1728	SSF53067	Actin-like ATPase domain
RD1_1729	SSF53850	Periplasmic binding protein-like II
RD1_1730	SSF161098	MetI-like
RD1_1731	SSF161098	MetI-like
RD1_1732	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1732	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_1733	SSF50331	MOP-like
RD1_1733	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1738	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1741	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1742	SSF56954	Outer membrane efflux proteins (OEP)
RD1_1746	SSF50104	Translation proteins SH3-like domain
RD1_1746	SSF50249	Nucleic acid-binding proteins
RD1_1747	SSF103025	Folate-binding domain
RD1_1748	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1749	SSF90123	ABC transporter transmembrane region
RD1_1750	SSF53383	PLP-dependent transferases
RD1_1752	SSF53383	PLP-dependent transferases
RD1_1753	SSF52096	ClpP/crotonase
RD1_1754	SSF46589	tRNA-binding arm
RD1_1754	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_1754	SSF50677	ValRS/IleRS/LeuRS editing domain
RD1_1754	SSF52374	Nucleotidylyl transferase
RD1_1756	SSF109604	HD-domain/PDEase-like
RD1_1757	SSF51197	Clavaminate synthase-like
RD1_1758	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
RD1_1758	SSF56003	Molybdenum cofactor-binding domain
RD1_1759	SSF53474	alpha/beta-Hydrolases
RD1_1761	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_1762	SSF51730	FAD-linked oxidoreductase
RD1_1763	SSF46785	"Winged helix" DNA-binding domain
RD1_1763	SSF53850	Periplasmic binding protein-like II
RD1_1764	SSF51069	Carbonic anhydrase
RD1_1766	SSF53098	Ribonuclease H-like
RD1_1767	SSF48452	TPR-like
RD1_1772	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
RD1_1772	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
RD1_1773	SSF102405	MCP/YpsA-like
RD1_1775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1775	SSF90123	ABC transporter transmembrane region
RD1_1776	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1777	SSF103247	TT1751-like
RD1_1778	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RD1_1778	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RD1_1778	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_1779	SSF111369	HlyD-like secretion proteins
RD1_1781	SSF50998	Quinoprotein alcohol dehydrogenase-like
RD1_1783	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1785	SSF53474	alpha/beta-Hydrolases
RD1_1787	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1787	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_1788	SSF51905	FAD/NAD(P)-binding domain
RD1_1788	SSF54373	FAD-linked reductases, C-terminal domain
RD1_1790	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_1790	SSF103025	Folate-binding domain
RD1_1790	SSF51905	FAD/NAD(P)-binding domain
RD1_1791	SSF103025	Folate-binding domain
RD1_1793	SSF56731	DNA primase core
RD1_1793	SSF57783	Zinc beta-ribbon
RD1_1794	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_1794	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_1797	SSF111038	YjbQ-like
RD1_1799	SSF53597	Dihydrofolate reductase-like
RD1_1799	SSF53927	Cytidine deaminase-like
RD1_1800	SSF63380	Riboflavin synthase domain-like
RD1_1801	SSF142695	RibA-like
RD1_1801	SSF55821	YrdC/RibB
RD1_1803	SSF52121	Lumazine synthase
RD1_1804	SSF48013	NusB-like
RD1_1807	SSF52980	Restriction endonuclease-like
RD1_1809	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_1811	SSF46689	Homeodomain-like
RD1_1812	SSF50978	WD40 repeat-like
RD1_1813	SSF55120	Pseudouridine synthase
RD1_1813	SSF55174	Alpha-L RNA-binding motif
RD1_1814	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_1814	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_1815	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_1817	SSF117018	ATP-dependent DNA ligase DNA-binding domain
RD1_1817	SSF50249	Nucleic acid-binding proteins
RD1_1817	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
RD1_1818	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1819	SSF53474	alpha/beta-Hydrolases
RD1_1820	SSF55718	SCP-like
RD1_1821	SSF48452	TPR-like
RD1_1822	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1823	SSF55174	Alpha-L RNA-binding motif
RD1_1824	SSF54862	4Fe-4S ferredoxins
RD1_1825	SSF141259	CarD-like
RD1_1827	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
RD1_1828	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1829	SSF46785	"Winged helix" DNA-binding domain
RD1_1829	SSF54909	Dimeric alpha+beta barrel
RD1_1830	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_1832	SSF53067	Actin-like ATPase domain
RD1_1834	SSF53383	PLP-dependent transferases
RD1_1835	SSF53383	PLP-dependent transferases
RD1_1837	SSF46785	"Winged helix" DNA-binding domain
RD1_1837	SSF53850	Periplasmic binding protein-like II
RD1_1838	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_1839	SSF53850	Periplasmic binding protein-like II
RD1_1841	SSF161098	MetI-like
RD1_1842	SSF53474	alpha/beta-Hydrolases
RD1_1848	SSF53041	Resolvase-like
RD1_1851	SSF46689	Homeodomain-like
RD1_1852	SSF53098	Ribonuclease H-like
RD1_1855	SSF46785	"Winged helix" DNA-binding domain
RD1_1856	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1859	SSF53850	Periplasmic binding protein-like II
RD1_1861	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1862	SSF161098	MetI-like
RD1_1863	SSF161098	MetI-like
RD1_1864	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1867	SSF53850	Periplasmic binding protein-like II
RD1_1868	SSF56801	Acetyl-CoA synthetase-like
RD1_1869	SSF46785	"Winged helix" DNA-binding domain
RD1_1870	SSF53300	vWA-like
RD1_1871	SSF53300	vWA-like
RD1_1872	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_1874	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
RD1_1875	SSF53597	Dihydrofolate reductase-like
RD1_1876	SSF50249	Nucleic acid-binding proteins
RD1_1877	SSF52833	Thioredoxin-like
RD1_1880	SSF51658	Xylose isomerase-like
RD1_1883	SSF52954	Class II aaRS ABD-related
RD1_1883	SSF55186	ThrRS/AlaRS common domain
RD1_1883	SSF55681	Class II aaRS and biotin synthetases
RD1_1883	SSF81271	TGS-like
RD1_1885	SSF53474	alpha/beta-Hydrolases
RD1_1886	SSF53474	alpha/beta-Hydrolases
RD1_1887	SSF53474	alpha/beta-Hydrolases
RD1_1888	SSF53474	alpha/beta-Hydrolases
RD1_1891	SSF51905	FAD/NAD(P)-binding domain
RD1_1892	SSF54368	Glutamine synthetase, N-terminal domain
RD1_1892	SSF55931	Glutamine synthetase/guanido kinase
RD1_1893	SSF52317	Class I glutamine amidotransferase-like
RD1_1894	SSF54368	Glutamine synthetase, N-terminal domain
RD1_1894	SSF55931	Glutamine synthetase/guanido kinase
RD1_1896	SSF161098	MetI-like
RD1_1897	SSF161098	MetI-like
RD1_1898	SSF53850	Periplasmic binding protein-like II
RD1_1899	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1900	SSF53850	Periplasmic binding protein-like II
RD1_1901	SSF158682	TerB-like
RD1_1902	SSF158682	TerB-like
RD1_1904	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_1906	SSF52317	Class I glutamine amidotransferase-like
RD1_1906	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1908	SSF56209	Nitrile hydratase alpha chain
RD1_1909	SSF50090	Electron transport accessory proteins
RD1_1910	SSF50090	Electron transport accessory proteins
RD1_1912	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1915	SSF63862	Thiamin pyrophosphokinase, substrate-binding domain
RD1_1915	SSF63999	Thiamin pyrophosphokinase, catalytic domain
RD1_1916	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1917	SSF143548	Serine metabolism enzymes domain
RD1_1918	SSF100950	NagB/RpiA/CoA transferase-like
RD1_1918	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
RD1_1919	SSF51905	FAD/NAD(P)-binding domain
RD1_1919	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_1920	SSF117892	Band 7/SPFH domain
RD1_1921	SSF117892	Band 7/SPFH domain
RD1_1923	SSF50156	PDZ domain-like
RD1_1923	SSF50494	Trypsin-like serine proteases
RD1_1924	SSF50249	Nucleic acid-binding proteins
RD1_1925	SSF54292	2Fe-2S ferredoxin-like
RD1_1926	SSF69318	Integrin alpha N-terminal domain
RD1_1927	SSF51246	Rudiment single hybrid motif
RD1_1927	SSF52440	PreATP-grasp domain
RD1_1927	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_1932	SSF47364	Domain of the SRP/SRP receptor G-proteins
RD1_1932	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1933	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1935	SSF51206	cAMP-binding domain-like
RD1_1937	SSF47616	GST C-terminal domain-like
RD1_1937	SSF52833	Thioredoxin-like
RD1_1938	SSF53474	alpha/beta-Hydrolases
RD1_1939	SSF53383	PLP-dependent transferases
RD1_1943	SSF52467	DHS-like NAD/FAD-binding domain
RD1_1943	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_1944	SSF47090	PGBD-like
RD1_1944	SSF50494	Trypsin-like serine proteases
RD1_1945	SSF55681	Class II aaRS and biotin synthetases
RD1_1947	SSF109604	HD-domain/PDEase-like
RD1_1948	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_1948	SSF52009	Phosphohistidine domain
RD1_1948	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_1950	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RD1_1951	SSF51717	Dihydropteroate synthetase-like
RD1_1952	SSF53738	Phosphoglucomutase, first 3 domains
RD1_1952	SSF55957	Phosphoglucomutase, C-terminal domain
RD1_1953	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_1954	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_1954	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_1955	SSF46785	"Winged helix" DNA-binding domain
RD1_1955	SSF54909	Dimeric alpha+beta barrel
RD1_1956	SSF46785	"Winged helix" DNA-binding domain
RD1_1956	SSF54909	Dimeric alpha+beta barrel
RD1_1957	SSF53383	PLP-dependent transferases
RD1_1958	SSF51905	FAD/NAD(P)-binding domain
RD1_1960	SSF56784	HAD-like
RD1_1961	SSF46785	"Winged helix" DNA-binding domain
RD1_1961	SSF48008	GntR ligand-binding domain-like
RD1_1962	SSF160246	EspE N-terminal domain-like
RD1_1962	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_1963	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
RD1_1963	SSF52317	Class I glutamine amidotransferase-like
RD1_1964	SSF89095	GatB/YqeY motif
RD1_1965	SSF46785	"Winged helix" DNA-binding domain
RD1_1967	SSF81442	Cytochrome c oxidase subunit I-like
RD1_1968	SSF55785	PYP-like sensor domain (PAS domain)
RD1_1969	SSF55785	PYP-like sensor domain (PAS domain)
RD1_1970	SSF55681	Class II aaRS and biotin synthetases
RD1_1973	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1973	SSF90123	ABC transporter transmembrane region
RD1_1974	SSF56801	Acetyl-CoA synthetase-like
RD1_1975	SSF53649	Alkaline phosphatase-like
RD1_1976	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_1977	SSF161098	MetI-like
RD1_1978	SSF161098	MetI-like
RD1_1979	SSF53850	Periplasmic binding protein-like II
RD1_1980	SSF49785	Galactose-binding domain-like
RD1_1980	SSF53474	alpha/beta-Hydrolases
RD1_1981	SSF82544	GckA/TtuD-like
RD1_1982	SSF69500	DTD-like
RD1_1986	SSF117892	Band 7/SPFH domain
RD1_1992	SSF55120	Pseudouridine synthase
RD1_1992	SSF55174	Alpha-L RNA-binding motif
RD1_1993	SSF53927	Cytidine deaminase-like
RD1_1994	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_1997	SSF57829	Zn-binding ribosomal proteins
RD1_1998	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RD1_2000	SSF75304	Amidase signature (AS) enzymes
RD1_2001	SSF141000	Glu-tRNAGln amidotransferase C subunit
RD1_2004	SSF46785	"Winged helix" DNA-binding domain
RD1_2004	SSF53850	Periplasmic binding protein-like II
RD1_2005	SSF47413	lambda repressor-like DNA-binding domains
RD1_2006	SSF56655	Carbohydrate phosphatase
RD1_2007	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_2007	SSF51556	Metallo-dependent hydrolases
RD1_2008	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_2008	SSF51556	Metallo-dependent hydrolases
RD1_2009	SSF158791	MgtE N-terminal domain-like
RD1_2009	SSF161093	MgtE membrane domain-like
RD1_2009	SSF54631	CBS-domain pair
RD1_2010	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2012	SSF56300	Metallo-dependent phosphatases
RD1_2013	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2014	SSF116726	TrkA C-terminal domain-like
RD1_2016	SSF116726	TrkA C-terminal domain-like
RD1_2018	SSF75625	YebC-like
RD1_2020	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2021	SSF46689	Homeodomain-like
RD1_2021	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_2022	SSF53649	Alkaline phosphatase-like
RD1_2023	SSF53720	ALDH-like
RD1_2024	SSF51905	FAD/NAD(P)-binding domain
RD1_2024	SSF54373	FAD-linked reductases, C-terminal domain
RD1_2025	SSF50199	Staphylococcal nuclease
RD1_2026	SSF47413	lambda repressor-like DNA-binding domains
RD1_2027	SSF103473	MFS general substrate transporter
RD1_2028	SSF52096	ClpP/crotonase
RD1_2032	SSF51230	Single hybrid motif
RD1_2032	SSF51246	Rudiment single hybrid motif
RD1_2032	SSF52440	PreATP-grasp domain
RD1_2032	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_2035	SSF51703	Cobalamin (vitamin B12)-dependent enzymes
RD1_2035	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_2037	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2039	SSF158682	TerB-like
RD1_2039	SSF46565	Chaperone J-domain
RD1_2041	SSF109604	HD-domain/PDEase-like
RD1_2041	SSF53067	Actin-like ATPase domain
RD1_2042	SSF140356	PPK N-terminal domain-like
RD1_2042	SSF143724	PHP14-like
RD1_2042	SSF56024	Phospholipase D/nuclease
RD1_2043	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2045	SSF52954	Class II aaRS ABD-related
RD1_2045	SSF55681	Class II aaRS and biotin synthetases
RD1_2048	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2049	SSF89733	L-sulfolactate dehydrogenase-like
RD1_2051	SSF46626	Cytochrome c
RD1_2054	SSF46626	Cytochrome c
RD1_2057	SSF54211	Ribosomal protein S5 domain 2-like
RD1_2057	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2057	SSF56719	Type II DNA topoisomerase
RD1_2059	SSF53474	alpha/beta-Hydrolases
RD1_2061	SSF53187	Zn-dependent exopeptidases
RD1_2062	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2063	SSF51905	FAD/NAD(P)-binding domain
RD1_2064	SSF56112	Protein kinase-like (PK-like)
RD1_2065	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_2065	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_2067	SSF51556	Metallo-dependent hydrolases
RD1_2070	SSF55120	Pseudouridine synthase
RD1_2072	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2074	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_2074	SSF50677	ValRS/IleRS/LeuRS editing domain
RD1_2074	SSF52374	Nucleotidylyl transferase
RD1_2075	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
RD1_2075	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
RD1_2078	SSF56349	DNA breaking-rejoining enzymes
RD1_2080	SSF51569	Aldolase
RD1_2081	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2082	SSF103473	MFS general substrate transporter
RD1_2084	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2088	SSF53098	Ribonuclease H-like
RD1_2089	SSF46929	DNA helicase RuvA subunit, C-terminal domain
RD1_2089	SSF47781	RuvA domain 2-like
RD1_2089	SSF50249	Nucleic acid-binding proteins
RD1_2090	SSF46785	"Winged helix" DNA-binding domain
RD1_2090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2092	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2096	SSF74653	TolA/TonB C-terminal domain
RD1_2097	SSF52964	TolB, N-terminal domain
RD1_2097	SSF69304	Tricorn protease N-terminal domain
RD1_2098	SSF103088	OmpA-like
RD1_2099	SSF48452	TPR-like
RD1_2100	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2101	SSF140990	FtsH protease domain-like
RD1_2101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2103	SSF50800	PK beta-barrel domain-like
RD1_2105	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2105	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_2106	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2107	SSF56300	Metallo-dependent phosphatases
RD1_2108	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2111	SSF48452	TPR-like
RD1_2112	SSF48452	TPR-like
RD1_2116	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2117	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2127	SSF53955	Lysozyme-like
RD1_2128	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2129	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2129	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2130	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2131	SSF56712	Prokaryotic type I DNA topoisomerase
RD1_2131	SSF57783	Zinc beta-ribbon
RD1_2132	SSF102405	MCP/YpsA-like
RD1_2133	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
RD1_2135	SSF49503	Cupredoxins
RD1_2135	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
RD1_2138	SSF110111	Ctag/Cox11
RD1_2139	SSF81452	Cytochrome c oxidase subunit III-like
RD1_2141	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_2142	SSF63411	LuxS/MPP-like metallohydrolase
RD1_2143	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2144	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_2145	SSF55103	FAD-linked oxidases, C-terminal domain
RD1_2145	SSF56176	FAD-binding/transporter-associated domain-like
RD1_2148	SSF53271	PRTase-like
RD1_2150	SSF53167	Purine and uridine phosphorylases
RD1_2151	SSF52091	SpoIIaa-like
RD1_2152	SSF50475	FMN-binding split barrel
RD1_2153	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2155	SSF55811	Nudix
RD1_2157	SSF53633	Carbamate kinase-like
RD1_2157	SSF55021	ACT-like
RD1_2158	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
RD1_2158	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_2158	SSF52009	Phosphohistidine domain
RD1_2158	SSF55781	GAF domain-like
RD1_2160	SSF55021	ACT-like
RD1_2161	SSF158472	HAMP domain-like
RD1_2161	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_2162	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2163	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2166	SSF53822	Periplasmic binding protein-like I
RD1_2171	SSF56796	Dehydroquinate synthase-like
RD1_2172	SSF53720	ALDH-like
RD1_2173	SSF54368	Glutamine synthetase, N-terminal domain
RD1_2173	SSF55931	Glutamine synthetase/guanido kinase
RD1_2174	SSF53850	Periplasmic binding protein-like II
RD1_2177	SSF53187	Zn-dependent exopeptidases
RD1_2178	SSF46689	Homeodomain-like
RD1_2178	SSF53697	SIS domain
RD1_2179	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_2180	SSF52317	Class I glutamine amidotransferase-like
RD1_2180	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2181	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2182	SSF53850	Periplasmic binding protein-like II
RD1_2183	SSF161098	MetI-like
RD1_2184	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2188	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_2189	SSF51395	FMN-linked oxidoreductases
RD1_2189	SSF51905	FAD/NAD(P)-binding domain
RD1_2190	SSF51905	FAD/NAD(P)-binding domain
RD1_2190	SSF54373	FAD-linked reductases, C-terminal domain
RD1_2192	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_2194	SSF46785	"Winged helix" DNA-binding domain
RD1_2194	SSF53850	Periplasmic binding protein-like II
RD1_2195	SSF48113	Heme-dependent peroxidases
RD1_2196	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2198	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2198	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2199	SSF56801	Acetyl-CoA synthetase-like
RD1_2202	SSF53850	Periplasmic binding protein-like II
RD1_2203	SSF47413	lambda repressor-like DNA-binding domains
RD1_2204	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_2207	SSF111369	HlyD-like secretion proteins
RD1_2208	SSF46689	Homeodomain-like
RD1_2208	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_2209	SSF56655	Carbohydrate phosphatase
RD1_2210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2211	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2213	SSF53822	Periplasmic binding protein-like I
RD1_2214	SSF46785	"Winged helix" DNA-binding domain
RD1_2214	SSF53067	Actin-like ATPase domain
RD1_2218	SSF141868	EAL domain-like
RD1_2218	SSF55073	Nucleotide cyclase
RD1_2218	SSF55781	GAF domain-like
RD1_2218	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2221	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2222	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2223	SSF161098	MetI-like
RD1_2224	SSF161098	MetI-like
RD1_2225	SSF53850	Periplasmic binding protein-like II
RD1_2226	SSF53850	Periplasmic binding protein-like II
RD1_2228	SSF56349	DNA breaking-rejoining enzymes
RD1_2232	SSF56349	DNA breaking-rejoining enzymes
RD1_2233	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2234	SSF116734	DNA methylase specificity domain
RD1_2235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2237	SSF56672	DNA/RNA polymerases
RD1_2239	SSF51905	FAD/NAD(P)-binding domain
RD1_2240	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2242	SSF159245	AttH-like
RD1_2243	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_2243	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_2244	SSF52172	CheY-like
RD1_2244	SSF52738	Methylesterase CheB, C-terminal domain
RD1_2245	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RD1_2246	SSF53098	Ribonuclease H-like
RD1_2249	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_2250	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2250	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2252	SSF55326	PurM N-terminal domain-like
RD1_2252	SSF56042	PurM C-terminal domain-like
RD1_2253	SSF53328	Formyltransferase
RD1_2254	SSF47819	HRDC-like
RD1_2254	SSF53098	Ribonuclease H-like
RD1_2256	SSF82649	SufE/NifU
RD1_2258	SSF47644	Methionine synthase domain
RD1_2258	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_2260	SSF82282	Homocysteine S-methyltransferase
RD1_2262	SSF56104	SAICAR synthase-like
RD1_2263	SSF82697	PurS-like
RD1_2264	SSF52317	Class I glutamine amidotransferase-like
RD1_2265	SSF103190	Sensory domain-like
RD1_2265	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2265	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2266	SSF46689	Homeodomain-like
RD1_2266	SSF52172	CheY-like
RD1_2266	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2267	SSF50249	Nucleic acid-binding proteins
RD1_2268	SSF64307	SirA-like
RD1_2270	SSF51569	Aldolase
RD1_2273	SSF48557	L-aspartase-like
RD1_2277	SSF101738	SspB-like
RD1_2279	SSF54427	NTF2-like
RD1_2283	SSF46785	"Winged helix" DNA-binding domain
RD1_2283	SSF48008	GntR ligand-binding domain-like
RD1_2287	SSF109854	DinB/YfiT-like putative metalloenzymes
RD1_2288	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_2288	SSF103025	Folate-binding domain
RD1_2290	SSF50129	GroES-like
RD1_2290	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2293	SSF53383	PLP-dependent transferases
RD1_2295	SSF48173	Cryptochrome/photolyase FAD-binding domain
RD1_2295	SSF52425	Cryptochrome/photolyase, N-terminal domain
RD1_2296	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2298	SSF55811	Nudix
RD1_2299	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_2300	SSF50182	Sm-like ribonucleoproteins
RD1_2300	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_2300	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_2302	SSF46626	Cytochrome c
RD1_2303	SSF55008	HMA, heavy metal-associated domain
RD1_2303	SSF56784	HAD-like
RD1_2303	SSF81653	Calcium ATPase, transduction domain A
RD1_2303	SSF81665	Calcium ATPase, transmembrane domain M
RD1_2304	SSF46955	Putative DNA-binding domain
RD1_2306	SSF49503	Cupredoxins
RD1_2308	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2308	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2309	SSF46785	"Winged helix" DNA-binding domain
RD1_2309	SSF64288	Chorismate lyase-like
RD1_2310	SSF51679	Bacterial luciferase-like
RD1_2311	SSF51430	NAD(P)-linked oxidoreductase
RD1_2312	SSF50475	FMN-binding split barrel
RD1_2316	SSF81901	HCP-like
RD1_2317	SSF46626	Cytochrome c
RD1_2318	SSF51445	(Trans)glycosidases
RD1_2320	SSF47413	lambda repressor-like DNA-binding domains
RD1_2320	SSF53822	Periplasmic binding protein-like I
RD1_2322	SSF53850	Periplasmic binding protein-like II
RD1_2323	SSF161098	MetI-like
RD1_2326	SSF51011	Glycosyl hydrolase domain
RD1_2326	SSF51445	(Trans)glycosidases
RD1_2327	SSF50331	MOP-like
RD1_2327	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2331	SSF50475	FMN-binding split barrel
RD1_2332	SSF56801	Acetyl-CoA synthetase-like
RD1_2336	SSF51905	FAD/NAD(P)-binding domain
RD1_2336	SSF54373	FAD-linked reductases, C-terminal domain
RD1_2337	SSF53383	PLP-dependent transferases
RD1_2338	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2340	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2341	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_2342	SSF161098	MetI-like
RD1_2343	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2344	SSF53850	Periplasmic binding protein-like II
RD1_2346	SSF53649	Alkaline phosphatase-like
RD1_2350	SSF101874	YceI-like
RD1_2352	SSF51126	Pectin lyase-like
RD1_2353	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2354	SSF52833	Thioredoxin-like
RD1_2356	SSF46689	Homeodomain-like
RD1_2356	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_2358	SSF50182	Sm-like ribonucleoproteins
RD1_2358	SSF51206	cAMP-binding domain-like
RD1_2358	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_2359	SSF46785	"Winged helix" DNA-binding domain
RD1_2360	SSF50022	ISP domain
RD1_2360	SSF55961	Bet v1-like
RD1_2362	SSF53927	Cytidine deaminase-like
RD1_2363	SSF88713	Glycoside hydrolase/deacetylase
RD1_2364	SSF50331	MOP-like
RD1_2364	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2367	SSF161098	MetI-like
RD1_2368	SSF161098	MetI-like
RD1_2369	SSF53850	Periplasmic binding protein-like II
RD1_2370	SSF46785	"Winged helix" DNA-binding domain
RD1_2370	SSF53850	Periplasmic binding protein-like II
RD1_2373	SSF53271	PRTase-like
RD1_2377	SSF54292	2Fe-2S ferredoxin-like
RD1_2378	SSF75011	3-carboxy-cis,cis-mucoante lactonizing enzyme
RD1_2379	SSF46785	"Winged helix" DNA-binding domain
RD1_2379	SSF55781	GAF domain-like
RD1_2380	SSF53822	Periplasmic binding protein-like I
RD1_2382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2383	SSF56112	Protein kinase-like (PK-like)
RD1_2384	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2385	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2387	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_2387	SSF51556	Metallo-dependent hydrolases
RD1_2388	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2389	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2390	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2393	SSF159709	PhnH-like
RD1_2395	SSF46785	"Winged helix" DNA-binding domain
RD1_2395	SSF64288	Chorismate lyase-like
RD1_2397	SSF46785	"Winged helix" DNA-binding domain
RD1_2397	SSF52788	Phosphotyrosine protein phosphatases I
RD1_2398	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2398	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2399	SSF103473	MFS general substrate transporter
RD1_2400	SSF51161	Trimeric LpxA-like enzymes
RD1_2401	SSF161098	MetI-like
RD1_2402	SSF53850	Periplasmic binding protein-like II
RD1_2403	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2404	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_2404	SSF51556	Metallo-dependent hydrolases
RD1_2406	SSF75304	Amidase signature (AS) enzymes
RD1_2407	SSF161098	MetI-like
RD1_2408	SSF161098	MetI-like
RD1_2409	SSF50331	MOP-like
RD1_2409	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2410	SSF53850	Periplasmic binding protein-like II
RD1_2411	SSF46785	"Winged helix" DNA-binding domain
RD1_2411	SSF48008	GntR ligand-binding domain-like
RD1_2412	SSF161098	MetI-like
RD1_2413	SSF161098	MetI-like
RD1_2414	SSF50331	MOP-like
RD1_2414	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2416	SSF53850	Periplasmic binding protein-like II
RD1_2417	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2417	SSF46785	"Winged helix" DNA-binding domain
RD1_2418	SSF53697	SIS domain
RD1_2419	SSF53613	Ribokinase-like
RD1_2420	SSF51391	Thiamin phosphate synthase
RD1_2421	SSF88713	Glycoside hydrolase/deacetylase
RD1_2422	SSF88713	Glycoside hydrolase/deacetylase
RD1_2424	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_2424	SSF51556	Metallo-dependent hydrolases
RD1_2427	SSF50331	MOP-like
RD1_2427	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2428	SSF53850	Periplasmic binding protein-like II
RD1_2429	SSF161098	MetI-like
RD1_2430	SSF161098	MetI-like
RD1_2431	SSF88713	Glycoside hydrolase/deacetylase
RD1_2432	SSF101898	NHL repeat
RD1_2433	SSF47413	lambda repressor-like DNA-binding domains
RD1_2437	SSF69118	AhpD-like
RD1_2438	SSF46785	"Winged helix" DNA-binding domain
RD1_2438	SSF51206	cAMP-binding domain-like
RD1_2439	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2440	SSF103473	MFS general substrate transporter
RD1_2441	SSF103473	MFS general substrate transporter
RD1_2442	SSF50692	ADC-like
RD1_2442	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_2443	SSF54862	4Fe-4S ferredoxins
RD1_2444	SSF89155	TorD-like
RD1_2445	SSF103501	Respiratory nitrate reductase 1 gamma chain
RD1_2446	SSF109998	Triger factor/SurA peptide-binding domain-like
RD1_2446	SSF54534	FKBP-like
RD1_2448	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_2448	SSF63867	MoeA C-terminal domain-like
RD1_2448	SSF63882	MoeA N-terminal region -like
RD1_2449	SSF52467	DHS-like NAD/FAD-binding domain
RD1_2449	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_2450	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2450	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_2451	SSF46785	"Winged helix" DNA-binding domain
RD1_2451	SSF51206	cAMP-binding domain-like
RD1_2453	SSF50182	Sm-like ribonucleoproteins
RD1_2453	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_2453	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_2459	SSF50346	PRC-barrel domain
RD1_2460	SSF58113	Apolipoprotein A-I
RD1_2461	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2462	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_2462	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_2463	SSF52172	CheY-like
RD1_2463	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_2464	SSF116726	TrkA C-terminal domain-like
RD1_2464	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2477	SSF56024	Phospholipase D/nuclease
RD1_2485	SSF56349	DNA breaking-rejoining enzymes
RD1_2487	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2487	SSF57783	Zinc beta-ribbon
RD1_2491	SSF56672	DNA/RNA polymerases
RD1_2492	SSF51120	beta-Roll
RD1_2492	SSF69318	Integrin alpha N-terminal domain
RD1_2496	SSF46689	Homeodomain-like
RD1_2496	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_2497	SSF75169	DsrEFH-like
RD1_2498	SSF50475	FMN-binding split barrel
RD1_2499	SSF51316	Mss4-like
RD1_2500	SSF46785	"Winged helix" DNA-binding domain
RD1_2500	SSF53850	Periplasmic binding protein-like II
RD1_2501	SSF51905	FAD/NAD(P)-binding domain
RD1_2502	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2504	SSF51395	FMN-linked oxidoreductases
RD1_2506	SSF51197	Clavaminate synthase-like
RD1_2507	SSF56655	Carbohydrate phosphatase
RD1_2508	SSF144091	Rhomboid-like
RD1_2509	SSF51730	FAD-linked oxidoreductase
RD1_2509	SSF53720	ALDH-like
RD1_2509	SSF81935	N-terminal domain of bifunctional PutA protein
RD1_2510	SSF46785	"Winged helix" DNA-binding domain
RD1_2510	SSF54909	Dimeric alpha+beta barrel
RD1_2511	SSF48452	TPR-like
RD1_2513	SSF158472	HAMP domain-like
RD1_2513	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2513	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_2516	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_2516	SSF52374	Nucleotidylyl transferase
RD1_2516	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
RD1_2517	SSF103473	MFS general substrate transporter
RD1_2518	SSF101874	YceI-like
RD1_2519	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2520	SSF51430	NAD(P)-linked oxidoreductase
RD1_2522	SSF50814	Lipocalins
RD1_2523	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2523	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2523	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2524	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2525	SSF55811	Nudix
RD1_2527	SSF52172	CheY-like
RD1_2527	SSF55073	Nucleotide cyclase
RD1_2529	SSF56784	HAD-like
RD1_2531	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport
RD1_2532	SSF55073	Nucleotide cyclase
RD1_2533	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RD1_2533	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RD1_2533	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_2534	SSF111369	HlyD-like secretion proteins
RD1_2536	SSF64182	DHH phosphoesterases
RD1_2537	SSF56655	Carbohydrate phosphatase
RD1_2538	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2538	SSF55021	ACT-like
RD1_2538	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2540	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2540	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2541	SSF46589	tRNA-binding arm
RD1_2541	SSF55681	Class II aaRS and biotin synthetases
RD1_2542	SSF50494	Trypsin-like serine proteases
RD1_2544	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_2545	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_2546	SSF64076	MTH938-like
RD1_2547	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2551	SSF52833	Thioredoxin-like
RD1_2552	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2553	SSF161098	MetI-like
RD1_2555	SSF52016	LeuD/IlvD-like
RD1_2555	SSF53732	Aconitase iron-sulfur domain
RD1_2556	SSF52833	Thioredoxin-like
RD1_2558	SSF48029	FliG
RD1_2559	SSF48557	L-aspartase-like
RD1_2563	SSF53474	alpha/beta-Hydrolases
RD1_2563	SSF82784	OsmC-like
RD1_2566	SSF55920	Creatinase/aminopeptidase
RD1_2569	SSF54368	Glutamine synthetase, N-terminal domain
RD1_2569	SSF55931	Glutamine synthetase/guanido kinase
RD1_2570	SSF54913	GlnB-like
RD1_2573	SSF51294	Hedgehog/intein (Hint) domain
RD1_2575	SSF50249	Nucleic acid-binding proteins
RD1_2576	SSF53955	Lysozyme-like
RD1_2578	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2580	SSF161098	MetI-like
RD1_2581	SSF161098	MetI-like
RD1_2582	SSF46689	Homeodomain-like
RD1_2582	SSF51215	Regulatory protein AraC
RD1_2584	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2585	SSF53633	Carbamate kinase-like
RD1_2586	SSF55194	Ribosome recycling factor, RRF
RD1_2587	SSF64005	Undecaprenyl diphosphate synthase
RD1_2590	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2590	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2590	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
RD1_2591	SSF50156	PDZ domain-like
RD1_2594	SSF111384	OmpH-like
RD1_2595	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2596	SSF51161	Trimeric LpxA-like enzymes
RD1_2598	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_2599	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2600	SSF48295	TrpR-like
RD1_2601	SSF52172	CheY-like
RD1_2602	SSF47781	RuvA domain 2-like
RD1_2602	SSF50249	Nucleic acid-binding proteins
RD1_2602	SSF52113	BRCT domain
RD1_2602	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
RD1_2604	SSF50249	Nucleic acid-binding proteins
RD1_2604	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2605	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_2606	SSF82649	SufE/NifU
RD1_2607	SSF141734	HisI-like
RD1_2608	SSF52374	Nucleotidylyl transferase
RD1_2609	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2610	SSF51905	FAD/NAD(P)-binding domain
RD1_2611	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2612	SSF54211	Ribosomal protein S5 domain 2-like
RD1_2613	SSF52161	Ribosomal protein L13
RD1_2614	SSF53300	vWA-like
RD1_2617	SSF55166	Hedgehog/DD-peptidase
RD1_2619	SSF141523	L,D-transpeptidase catalytic domain-like
RD1_2619	SSF47090	PGBD-like
RD1_2620	SSF51161	Trimeric LpxA-like enzymes
RD1_2621	SSF47336	ACP-like
RD1_2623	SSF53901	Thiolase-like
RD1_2625	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2628	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2630	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2631	SSF53822	Periplasmic binding protein-like I
RD1_2633	SSF50952	Soluble quinoprotein glucose dehydrogenase
RD1_2634	SSF46689	Homeodomain-like
RD1_2634	SSF52317	Class I glutamine amidotransferase-like
RD1_2635	SSF51569	Aldolase
RD1_2638	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2639	SSF51161	Trimeric LpxA-like enzymes
RD1_2640	SSF53383	PLP-dependent transferases
RD1_2641	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2641	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2642	SSF53850	Periplasmic binding protein-like II
RD1_2643	SSF161098	MetI-like
RD1_2644	SSF161098	MetI-like
RD1_2646	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2647	SSF109755	PhoU-like
RD1_2648	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_2648	SSF52172	CheY-like
RD1_2650	SSF53098	Ribonuclease H-like
RD1_2651	SSF52304	Type II 3-dehydroquinate dehydratase
RD1_2652	SSF46934	UBA-like
RD1_2652	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
RD1_2653	SSF52313	Ribosomal protein S2
RD1_2655	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RD1_2656	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2658	SSF53720	ALDH-like
RD1_2659	SSF53633	Carbamate kinase-like
RD1_2659	SSF88697	PUA domain-like
RD1_2660	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2660	SSF82051	Obg GTP-binding protein N-terminal domain
RD1_2661	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2663	SSF110324	Ribosomal L27 protein-like
RD1_2665	SSF141091	L21p-like
RD1_2672	SSF47240	Ferritin-like
RD1_2673	SSF53807	"Helical backbone" metal receptor
RD1_2674	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_2675	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2676	SSF49503	Cupredoxins
RD1_2678	SSF53474	alpha/beta-Hydrolases
RD1_2682	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2683	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_2684	SSF56601	beta-lactamase/transpeptidase-like
RD1_2685	SSF53383	PLP-dependent transferases
RD1_2687	SSF55073	Nucleotide cyclase
RD1_2689	SSF53383	PLP-dependent transferases
RD1_2692	SSF101960	Stabilizer of iron transporter SufD
RD1_2694	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2695	SSF117782	YbjQ-like
RD1_2696	SSF101960	Stabilizer of iron transporter SufD
RD1_2698	SSF53383	PLP-dependent transferases
RD1_2700	SSF46785	"Winged helix" DNA-binding domain
RD1_2701	SSF53474	alpha/beta-Hydrolases
RD1_2703	SSF109604	HD-domain/PDEase-like
RD1_2704	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_2706	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2707	SSF50447	Translation proteins
RD1_2707	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2707	SSF54980	EF-G C-terminal domain-like
RD1_2708	SSF54909	Dimeric alpha+beta barrel
RD1_2709	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
RD1_2709	SSF50447	Translation proteins
RD1_2709	SSF55186	ThrRS/AlaRS common domain
RD1_2709	SSF55681	Class II aaRS and biotin synthetases
RD1_2710	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2710	SSF54752	RecA protein, C-terminal domain
RD1_2711	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2711	SSF52172	CheY-like
RD1_2711	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2711	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2712	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2713	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
RD1_2713	SSF54631	CBS-domain pair
RD1_2715	SSF52768	Arginase/deacetylase
RD1_2716	SSF54292	2Fe-2S ferredoxin-like
RD1_2718	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_2720	SSF53697	SIS domain
RD1_2721	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2722	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2722	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2724	SSF102114	Radical SAM enzymes
RD1_2726	SSF101904	GyrA/ParC C-terminal domain-like
RD1_2726	SSF56719	Type II DNA topoisomerase
RD1_2727	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_2729	SSF75217	alpha/beta knot
RD1_2730	SSF51391	Thiamin phosphate synthase
RD1_2733	SSF53613	Ribokinase-like
RD1_2734	SSF110581	Indigoidine synthase A-like
RD1_2736	SSF52151	FabD/lysophospholipase-like
RD1_2738	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2741	SSF53850	Periplasmic binding protein-like II
RD1_2742	SSF47413	lambda repressor-like DNA-binding domains
RD1_2742	SSF51182	RmlC-like cupins
RD1_2743	SSF56801	Acetyl-CoA synthetase-like
RD1_2744	SSF52833	Thioredoxin-like
RD1_2745	SSF103473	MFS general substrate transporter
RD1_2746	SSF141259	CarD-like
RD1_2746	SSF143517	TRCF domain-like
RD1_2746	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2749	SSF51569	Aldolase
RD1_2751	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2751	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2752	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_2753	SSF55120	Pseudouridine synthase
RD1_2754	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2755	SSF50182	Sm-like ribonucleoproteins
RD1_2757	SSF116726	TrkA C-terminal domain-like
RD1_2757	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2759	SSF54427	NTF2-like
RD1_2761	SSF46689	Homeodomain-like
RD1_2761	SSF52172	CheY-like
RD1_2761	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2762	SSF158472	HAMP domain-like
RD1_2762	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2762	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2762	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2763	SSF46689	Homeodomain-like
RD1_2763	SSF52172	CheY-like
RD1_2763	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2764	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2764	SSF55785	PYP-like sensor domain (PAS domain)
RD1_2764	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2765	SSF51395	FMN-linked oxidoreductases
RD1_2766	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_2767	SSF69765	IpsF-like
RD1_2768	SSF101307	YutG-like
RD1_2769	SSF142433	CinA-like
RD1_2770	SSF55961	Bet v1-like
RD1_2771	SSF53271	PRTase-like
RD1_2773	SSF102114	Radical SAM enzymes
RD1_2778	SSF52317	Class I glutamine amidotransferase-like
RD1_2778	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2778	SSF54810	GMP synthetase C-terminal dimerisation domain
RD1_2779	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2780	SSF56935	Porins
RD1_2782	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_2783	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2784	SSF52317	Class I glutamine amidotransferase-like
RD1_2785	SSF53474	alpha/beta-Hydrolases
RD1_2786	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2787	SSF46689	Homeodomain-like
RD1_2787	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_2790	SSF158442	DsbB-like
RD1_2791	SSF51905	FAD/NAD(P)-binding domain
RD1_2791	SSF54373	FAD-linked reductases, C-terminal domain
RD1_2792	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
RD1_2792	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_2793	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2794	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2798	SSF88723	PIN domain-like
RD1_2799	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_2799	SSF88697	PUA domain-like
RD1_2802	SSF81301	Nucleotidyltransferase
RD1_2802	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RD1_2805	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2810	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2811	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_2811	SSF52172	CheY-like
RD1_2812	SSF52467	DHS-like NAD/FAD-binding domain
RD1_2812	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_2813	SSF55021	ACT-like
RD1_2815	SSF47413	lambda repressor-like DNA-binding domains
RD1_2816	SSF50022	ISP domain
RD1_2816	SSF55961	Bet v1-like
RD1_2819	SSF75620	Release factor
RD1_2820	SSF53955	Lysozyme-like
RD1_2820	SSF56601	beta-lactamase/transpeptidase-like
RD1_2821	SSF53187	Zn-dependent exopeptidases
RD1_2822	SSF53383	PLP-dependent transferases
RD1_2823	SSF48452	TPR-like
RD1_2824	SSF52833	Thioredoxin-like
RD1_2825	SSF51717	Dihydropteroate synthetase-like
RD1_2825	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
RD1_2827	SSF53383	PLP-dependent transferases
RD1_2828	SSF53187	Zn-dependent exopeptidases
RD1_2829	SSF53474	alpha/beta-Hydrolases
RD1_2831	SSF51182	RmlC-like cupins
RD1_2834	SSF53254	Phosphoglycerate mutase-like
RD1_2837	SSF52799	(Phosphotyrosine protein) phosphatases II
RD1_2838	SSF101801	Surface presentation of antigens (SPOA)
RD1_2839	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2839	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2841	SSF52172	CheY-like
RD1_2842	SSF47413	lambda repressor-like DNA-binding domains
RD1_2843	SSF53822	Periplasmic binding protein-like I
RD1_2846	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2847	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2848	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2849	SSF56801	Acetyl-CoA synthetase-like
RD1_2850	SSF51230	Single hybrid motif
RD1_2851	SSF51246	Rudiment single hybrid motif
RD1_2851	SSF52440	PreATP-grasp domain
RD1_2851	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_2852	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_2856	SSF55298	YjgF-like
RD1_2857	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2857	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_2858	SSF52096	ClpP/crotonase
RD1_2859	SSF48173	Cryptochrome/photolyase FAD-binding domain
RD1_2860	SSF50331	MOP-like
RD1_2860	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2861	SSF46785	"Winged helix" DNA-binding domain
RD1_2861	SSF55781	GAF domain-like
RD1_2862	SSF53850	Periplasmic binding protein-like II
RD1_2863	SSF161098	MetI-like
RD1_2864	SSF161098	MetI-like
RD1_2865	SSF51445	(Trans)glycosidases
RD1_2866	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2868	SSF51569	Aldolase
RD1_2869	SSF51445	(Trans)glycosidases
RD1_2869	SSF52317	Class I glutamine amidotransferase-like
RD1_2870	SSF53738	Phosphoglucomutase, first 3 domains
RD1_2870	SSF55957	Phosphoglucomutase, C-terminal domain
RD1_2871	SSF51445	(Trans)glycosidases
RD1_2872	SSF51011	Glycosyl hydrolase domain
RD1_2872	SSF51445	(Trans)glycosidases
RD1_2872	SSF81296	E set domains
RD1_2873	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_2874	SSF51161	Trimeric LpxA-like enzymes
RD1_2874	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_2875	SSF51011	Glycosyl hydrolase domain
RD1_2875	SSF51445	(Trans)glycosidases
RD1_2875	SSF81296	E set domains
RD1_2876	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_2877	SSF53613	Ribokinase-like
RD1_2878	SSF51569	Aldolase
RD1_2879	SSF143975	IlvD/EDD N-terminal domain-like
RD1_2879	SSF52016	LeuD/IlvD-like
RD1_2880	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2880	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2882	SSF56796	Dehydroquinate synthase-like
RD1_2883	SSF53067	Actin-like ATPase domain
RD1_2884	SSF51905	FAD/NAD(P)-binding domain
RD1_2884	SSF54373	FAD-linked reductases, C-terminal domain
RD1_2885	SSF100950	NagB/RpiA/CoA transferase-like
RD1_2885	SSF46785	"Winged helix" DNA-binding domain
RD1_2887	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2888	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2889	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2890	SSF51419	PLP-binding barrel
RD1_2891	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_2892	SSF53383	PLP-dependent transferases
RD1_2893	SSF46785	"Winged helix" DNA-binding domain
RD1_2893	SSF55781	GAF domain-like
RD1_2894	SSF46785	"Winged helix" DNA-binding domain
RD1_2894	SSF48008	GntR ligand-binding domain-like
RD1_2895	SSF81342	Transmembrane di-heme cytochromes
RD1_2896	SSF54862	4Fe-4S ferredoxins
RD1_2897	SSF50692	ADC-like
RD1_2897	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_2899	SSF89155	TorD-like
RD1_2902	SSF54862	4Fe-4S ferredoxins
RD1_2903	SSF46626	Cytochrome c
RD1_2906	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RD1_2906	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2907	SSF55681	Class II aaRS and biotin synthetases
RD1_2909	SSF53850	Periplasmic binding protein-like II
RD1_2910	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2911	SSF161098	MetI-like
RD1_2913	SSF53850	Periplasmic binding protein-like II
RD1_2914	SSF161098	MetI-like
RD1_2915	SSF50331	MOP-like
RD1_2915	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2917	SSF56801	Acetyl-CoA synthetase-like
RD1_2918	SSF53720	ALDH-like
RD1_2920	SSF53850	Periplasmic binding protein-like II
RD1_2923	SSF47413	lambda repressor-like DNA-binding domains
RD1_2923	SSF53822	Periplasmic binding protein-like I
RD1_2925	SSF52151	FabD/lysophospholipase-like
RD1_2926	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_2926	SSF52922	TK C-terminal domain-like
RD1_2927	SSF48452	TPR-like
RD1_2927	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2927	SSF55073	Nucleotide cyclase
RD1_2928	SSF52151	FabD/lysophospholipase-like
RD1_2930	SSF53850	Periplasmic binding protein-like II
RD1_2931	SSF161098	MetI-like
RD1_2932	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2933	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2933	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2934	SSF51556	Metallo-dependent hydrolases
RD1_2935	SSF161098	MetI-like
RD1_2936	SSF50331	MOP-like
RD1_2936	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2937	SSF161098	MetI-like
RD1_2938	SSF161098	MetI-like
RD1_2939	SSF53850	Periplasmic binding protein-like II
RD1_2940	SSF55144	LigT-like
RD1_2941	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_2943	SSF53850	Periplasmic binding protein-like II
RD1_2944	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_2944	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_2945	SSF52172	CheY-like
RD1_2946	SSF53850	Periplasmic binding protein-like II
RD1_2950	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2950	SSF54211	Ribosomal protein S5 domain 2-like
RD1_2950	SSF88697	PUA domain-like
RD1_2951	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_2952	SSF51713	tRNA-guanine transglycosylase
RD1_2953	SSF141571	Pentapeptide repeat-like
RD1_2954	SSF117892	Band 7/SPFH domain
RD1_2956	SSF50630	Acid proteases
RD1_2956	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_2957	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RD1_2959	SSF51161	Trimeric LpxA-like enzymes
RD1_2960	SSF89360	HesB-like domain
RD1_2961	SSF51351	Triosephosphate isomerase (TIM)
RD1_2962	SSF48264	Cytochrome P450
RD1_2963	SSF46785	"Winged helix" DNA-binding domain
RD1_2963	SSF54909	Dimeric alpha+beta barrel
RD1_2964	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2964	SSF53790	Tetrapyrrole methylase
RD1_2964	SSF75615	Siroheme synthase middle domains-like
RD1_2966	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
RD1_2966	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
RD1_2967	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_2969	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
RD1_2969	SSF63380	Riboflavin synthase domain-like
RD1_2970	SSF54364	Translation initiation factor IF3, N-terminal domain
RD1_2970	SSF55200	Translation initiation factor IF3, C-terminal domain
RD1_2972	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
RD1_2972	SSF56176	FAD-binding/transporter-associated domain-like
RD1_2973	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
RD1_2973	SSF56003	Molybdenum cofactor-binding domain
RD1_2974	SSF47741	CO dehydrogenase ISP C-domain like
RD1_2974	SSF54292	2Fe-2S ferredoxin-like
RD1_2975	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_2977	SSF82657	BolA-like
RD1_2979	SSF52833	Thioredoxin-like
RD1_2980	SSF102829	Cell division protein ZapA-like
RD1_2982	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_2982	SSF52922	TK C-terminal domain-like
RD1_2984	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2984	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_2985	SSF52374	Nucleotidylyl transferase
RD1_2986	SSF54631	CBS-domain pair
RD1_2988	SSF46785	"Winged helix" DNA-binding domain
RD1_2988	SSF53850	Periplasmic binding protein-like II
RD1_2990	SSF53720	ALDH-like
RD1_2991	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_2991	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_2991	SSF52096	ClpP/crotonase
RD1_2993	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_2995	SSF51905	FAD/NAD(P)-binding domain
RD1_2995	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_2996	SSF48452	TPR-like
RD1_2997	SSF103473	MFS general substrate transporter
RD1_2998	SSF111337	QueA-like
RD1_3000	SSF52833	Thioredoxin-like
RD1_3001	SSF47240	Ferritin-like
RD1_3002	SSF51261	Duplicated hybrid motif
RD1_3006	SSF50891	Cyclophilin-like
RD1_3007	SSF50891	Cyclophilin-like
RD1_3008	SSF53748	Phosphoglycerate kinase
RD1_3011	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_3013	SSF51230	Single hybrid motif
RD1_3013	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_3013	SSF52922	TK C-terminal domain-like
RD1_3014	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RD1_3014	SSF51230	Single hybrid motif
RD1_3014	SSF52777	CoA-dependent acyltransferases
RD1_3015	SSF51161	Trimeric LpxA-like enzymes
RD1_3016	SSF51445	(Trans)glycosidases
RD1_3017	SSF54001	Cysteine proteinases
RD1_3028	SSF56563	Major capsid protein gp5
RD1_3030	SSF50789	Herpes virus serine proteinase, assemblin
RD1_3036	SSF53901	Thiolase-like
RD1_3037	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_3038	SSF47336	ACP-like
RD1_3039	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3040	SSF52151	FabD/lysophospholipase-like
RD1_3040	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
RD1_3041	SSF101874	YceI-like
RD1_3041	SSF81342	Transmembrane di-heme cytochromes
RD1_3042	SSF101874	YceI-like
RD1_3043	SSF54995	Ribosomal protein S6
RD1_3044	SSF46911	Ribosomal protein S18
RD1_3045	SSF55653	Ribosomal protein L9 C-domain
RD1_3045	SSF55658	L9 N-domain-like
RD1_3048	SSF81338	Aquaporin-like
RD1_3049	SSF102735	Trigger factor ribosome-binding domain
RD1_3049	SSF109998	Triger factor/SurA peptide-binding domain-like
RD1_3049	SSF54534	FKBP-like
RD1_3050	SSF51206	cAMP-binding domain-like
RD1_3050	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3050	SSF90123	ABC transporter transmembrane region
RD1_3052	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3053	SSF53067	Actin-like ATPase domain
RD1_3056	SSF51730	FAD-linked oxidoreductase
RD1_3057	SSF51717	Dihydropteroate synthetase-like
RD1_3058	SSF52172	CheY-like
RD1_3059	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
RD1_3059	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3059	SSF50341	CheW-like
RD1_3059	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3060	SSF50341	CheW-like
RD1_3061	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
RD1_3061	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3062	SSF52172	CheY-like
RD1_3063	SSF53098	Ribonuclease H-like
RD1_3066	SSF51120	beta-Roll
RD1_3069	SSF56349	DNA breaking-rejoining enzymes
RD1_3070	SSF47413	lambda repressor-like DNA-binding domains
RD1_3075	SSF53067	Actin-like ATPase domain
RD1_3076	SSF54909	Dimeric alpha+beta barrel
RD1_3079	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3080	SSF53822	Periplasmic binding protein-like I
RD1_3082	SSF100950	NagB/RpiA/CoA transferase-like
RD1_3082	SSF46785	"Winged helix" DNA-binding domain
RD1_3083	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3083	SSF53639	AraD/HMP-PK domain-like
RD1_3084	SSF51658	Xylose isomerase-like
RD1_3085	SSF103190	Sensory domain-like
RD1_3085	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3085	SSF55785	PYP-like sensor domain (PAS domain)
RD1_3085	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3086	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_3086	SSF52172	CheY-like
RD1_3087	SSF56796	Dehydroquinate synthase-like
RD1_3088	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3091	SSF56349	DNA breaking-rejoining enzymes
RD1_3092	SSF54631	CBS-domain pair
RD1_3092	SSF56176	FAD-binding/transporter-associated domain-like
RD1_3093	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_3093	SSF103025	Folate-binding domain
RD1_3093	SSF51905	FAD/NAD(P)-binding domain
RD1_3093	SSF54373	FAD-linked reductases, C-terminal domain
RD1_3095	SSF53474	alpha/beta-Hydrolases
RD1_3096	SSF53850	Periplasmic binding protein-like II
RD1_3097	SSF161098	MetI-like
RD1_3098	SSF161098	MetI-like
RD1_3099	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3100	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3100	SSF51556	Metallo-dependent hydrolases
RD1_3101	SSF53187	Zn-dependent exopeptidases
RD1_3101	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_3102	SSF46689	Homeodomain-like
RD1_3102	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_3103	SSF51395	FMN-linked oxidoreductases
RD1_3103	SSF54862	4Fe-4S ferredoxins
RD1_3104	SSF46548	alpha-helical ferredoxin
RD1_3104	SSF51971	Nucleotide-binding domain
RD1_3107	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
RD1_3107	SSF52738	Methylesterase CheB, C-terminal domain
RD1_3107	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3107	SSF55785	PYP-like sensor domain (PAS domain)
RD1_3109	SSF74650	Galactose mutarotase-like
RD1_3111	SSF54919	Nucleoside diphosphate kinase, NDK
RD1_3112	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3113	SSF111126	Ligand-binding domain in the NO signalling and Golgi transport
RD1_3116	SSF50630	Acid proteases
RD1_3117	SSF102400	DNA polymerase III chi subunit
RD1_3118	SSF52949	Macro domain-like
RD1_3118	SSF53187	Zn-dependent exopeptidases
RD1_3122	SSF109998	Triger factor/SurA peptide-binding domain-like
RD1_3122	SSF54534	FKBP-like
RD1_3123	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_3124	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3126	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3127	SSF75620	Release factor
RD1_3130	SSF52768	Arginase/deacetylase
RD1_3131	SSF52768	Arginase/deacetylase
RD1_3132	SSF53187	Zn-dependent exopeptidases
RD1_3132	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_3133	SSF101386	all-alpha NTP pyrophosphatases
RD1_3134	SSF53590	Nucleoside hydrolase
RD1_3135	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_3137	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_3138	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3140	SSF46785	"Winged helix" DNA-binding domain
RD1_3141	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_3142	SSF51604	Enolase C-terminal domain-like
RD1_3142	SSF54826	Enolase N-terminal domain-like
RD1_3143	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_3144	SSF51905	FAD/NAD(P)-binding domain
RD1_3145	SSF53067	Actin-like ATPase domain
RD1_3146	SSF52374	Nucleotidylyl transferase
RD1_3146	SSF55174	Alpha-L RNA-binding motif
RD1_3147	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3149	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3150	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_3154	SSF57829	Zn-binding ribosomal proteins
RD1_3155	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_3156	SSF53901	Thiolase-like
RD1_3157	SSF47729	IHF-like DNA-binding proteins
RD1_3158	SSF46955	Putative DNA-binding domain
RD1_3160	SSF51283	dUTPase-like
RD1_3161	SSF46785	"Winged helix" DNA-binding domain
RD1_3163	SSF51445	(Trans)glycosidases
RD1_3165	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_3165	SSF52374	Nucleotidylyl transferase
RD1_3165	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
RD1_3167	SSF109604	HD-domain/PDEase-like
RD1_3168	SSF89360	HesB-like domain
RD1_3171	SSF56219	DNase I-like
RD1_3172	SSF158682	TerB-like
RD1_3174	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_3175	SSF53474	alpha/beta-Hydrolases
RD1_3176	SSF48150	DNA-glycosylase
RD1_3179	SSF103473	MFS general substrate transporter
RD1_3180	SSF48576	Terpenoid synthases
RD1_3182	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
RD1_3182	SSF51569	Aldolase
RD1_3183	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RD1_3183	SSF52374	Nucleotidylyl transferase
RD1_3185	SSF53383	PLP-dependent transferases
RD1_3190	SSF47473	EF-hand
RD1_3192	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_3193	SSF51998	PFL-like glycyl radical enzymes
RD1_3193	SSF75625	YebC-like
RD1_3197	SSF50249	Nucleic acid-binding proteins
RD1_3198	SSF50475	FMN-binding split barrel
RD1_3199	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3201	SSF53271	PRTase-like
RD1_3202	SSF53383	PLP-dependent transferases
RD1_3203	SSF109998	Triger factor/SurA peptide-binding domain-like
RD1_3205	SSF56322	ADC synthase
RD1_3206	SSF53187	Zn-dependent exopeptidases
RD1_3207	SSF141868	EAL domain-like
RD1_3207	SSF55073	Nucleotide cyclase
RD1_3208	SSF88713	Glycoside hydrolase/deacetylase
RD1_3209	SSF52317	Class I glutamine amidotransferase-like
RD1_3210	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
RD1_3210	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
RD1_3211	SSF52141	Uracil-DNA glycosylase-like
RD1_3213	SSF51366	Ribulose-phoshate binding barrel
RD1_3214	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
RD1_3215	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_3215	SSF63867	MoeA C-terminal domain-like
RD1_3215	SSF63882	MoeA N-terminal region -like
RD1_3216	SSF46785	"Winged helix" DNA-binding domain
RD1_3216	SSF51306	LexA/Signal peptidase
RD1_3218	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RD1_3218	SSF52374	Nucleotidylyl transferase
RD1_3219	SSF48256	Citrate synthase
RD1_3221	SSF52096	ClpP/crotonase
RD1_3225	SSF53955	Lysozyme-like
RD1_3226	SSF82093	Heme chaperone CcmE
RD1_3227	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3227	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_3228	SSF53681	Aspartate/glutamate racemase
RD1_3229	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RD1_3230	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_3230	SSF53323	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
RD1_3231	SSF46785	"Winged helix" DNA-binding domain
RD1_3231	SSF53850	Periplasmic binding protein-like II
RD1_3232	SSF55326	PurM N-terminal domain-like
RD1_3232	SSF56042	PurM C-terminal domain-like
RD1_3233	SSF53300	vWA-like
RD1_3234	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3235	SSF51556	Metallo-dependent hydrolases
RD1_3236	SSF53271	PRTase-like
RD1_3237	SSF48024	N-terminal domain of DnaB helicase
RD1_3237	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3240	SSF50621	Alanine racemase C-terminal domain-like
RD1_3240	SSF51419	PLP-binding barrel
RD1_3243	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3245	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3245	SSF54211	Ribosomal protein S5 domain 2-like
RD1_3247	SSF53271	PRTase-like
RD1_3247	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_3248	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3249	SSF64167	SurE-like
RD1_3250	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3251	SSF51261	Duplicated hybrid motif
RD1_3251	SSF54106	LysM domain
RD1_3252	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3256	SSF54909	Dimeric alpha+beta barrel
RD1_3257	SSF46785	"Winged helix" DNA-binding domain
RD1_3260	SSF50331	MOP-like
RD1_3260	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3261	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3262	SSF50447	Translation proteins
RD1_3262	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3262	SSF54980	EF-G C-terminal domain-like
RD1_3263	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3265	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_3266	SSF53067	Actin-like ATPase domain
RD1_3267	SSF55681	Class II aaRS and biotin synthetases
RD1_3274	SSF69118	AhpD-like
RD1_3275	SSF54862	4Fe-4S ferredoxins
RD1_3278	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_3278	SSF54292	2Fe-2S ferredoxin-like
RD1_3278	SSF54862	4Fe-4S ferredoxins
RD1_3281	SSF54909	Dimeric alpha+beta barrel
RD1_3282	SSF140490	Nqo1C-terminal domain-like
RD1_3282	SSF142019	Nqo1 FMN-binding domain-like
RD1_3282	SSF142984	Nqo1 middle domain-like
RD1_3285	SSF52833	Thioredoxin-like
RD1_3287	SSF56762	HydB/Nqo4-like
RD1_3289	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3290	SSF143243	Nqo5-like
RD1_3291	SSF56770	HydA/Nqo6-like
RD1_3293	SSF82153	FAS1 domain
RD1_3294	SSF52096	ClpP/crotonase
RD1_3295	SSF51569	Aldolase
RD1_3296	SSF47616	GST C-terminal domain-like
RD1_3296	SSF52833	Thioredoxin-like
RD1_3297	SSF51230	Single hybrid motif
RD1_3297	SSF51246	Rudiment single hybrid motif
RD1_3297	SSF52440	PreATP-grasp domain
RD1_3297	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_3298	SSF52096	ClpP/crotonase
RD1_3300	SSF56925	OMPA-like
RD1_3301	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3301	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3302	SSF53383	PLP-dependent transferases
RD1_3303	SSF56784	HAD-like
RD1_3304	SSF51161	Trimeric LpxA-like enzymes
RD1_3304	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_3305	SSF53697	SIS domain
RD1_3305	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_3306	SSF50475	FMN-binding split barrel
RD1_3307	SSF102114	Radical SAM enzymes
RD1_3308	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_3309	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_3310	SSF53187	Zn-dependent exopeptidases
RD1_3310	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_3311	SSF53187	Zn-dependent exopeptidases
RD1_3311	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_3314	SSF53850	Periplasmic binding protein-like II
RD1_3315	SSF161098	MetI-like
RD1_3316	SSF161098	MetI-like
RD1_3318	SSF52467	DHS-like NAD/FAD-binding domain
RD1_3319	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3319	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_3321	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3323	SSF52317	Class I glutamine amidotransferase-like
RD1_3325	SSF51645	Malate synthase G
RD1_3327	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_3327	SSF63737	Leukotriene A4 hydrolase N-terminal domain
RD1_3328	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3330	SSF53955	Lysozyme-like
RD1_3333	SSF55931	Glutamine synthetase/guanido kinase
RD1_3333	SSF89095	GatB/YqeY motif
RD1_3335	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_3337	SSF82657	BolA-like
RD1_3338	SSF46565	Chaperone J-domain
RD1_3339	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3340	SSF53300	vWA-like
RD1_3341	SSF53092	Creatinase/prolidase N-terminal domain
RD1_3341	SSF55920	Creatinase/aminopeptidase
RD1_3343	SSF81340	Clc chloride channel
RD1_3344	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3345	SSF48452	TPR-like
RD1_3346	SSF54211	Ribosomal protein S5 domain 2-like
RD1_3348	SSF52490	Tubulin nucleotide-binding domain-like
RD1_3348	SSF55307	Tubulin C-terminal domain-like
RD1_3349	SSF53067	Actin-like ATPase domain
RD1_3351	SSF52440	PreATP-grasp domain
RD1_3351	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_3352	SSF56176	FAD-binding/transporter-associated domain-like
RD1_3352	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
RD1_3355	SSF51984	MurCD N-terminal domain
RD1_3355	SSF53244	MurD-like peptide ligases, peptide-binding domain
RD1_3355	SSF53623	MurD-like peptide ligases, catalytic domain
RD1_3357	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_3359	SSF160996	HI0933 insert domain-like
RD1_3359	SSF51905	FAD/NAD(P)-binding domain
RD1_3361	SSF51984	MurCD N-terminal domain
RD1_3361	SSF53244	MurD-like peptide ligases, peptide-binding domain
RD1_3361	SSF53623	MurD-like peptide ligases, catalytic domain
RD1_3364	SSF53244	MurD-like peptide ligases, peptide-binding domain
RD1_3364	SSF53623	MurD-like peptide ligases, catalytic domain
RD1_3364	SSF63418	MurE/MurF N-terminal domain
RD1_3365	SSF53244	MurD-like peptide ligases, peptide-binding domain
RD1_3365	SSF53623	MurD-like peptide ligases, catalytic domain
RD1_3365	SSF63418	MurE/MurF N-terminal domain
RD1_3366	SSF56519	Penicillin binding protein dimerisation domain
RD1_3366	SSF56601	beta-lactamase/transpeptidase-like
RD1_3368	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3368	SSF81799	Putative methyltransferase TM0872, insert domain
RD1_3370	SSF89447	AbrB/MazE/MraZ-like
RD1_3371	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RD1_3371	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3373	SSF55144	LigT-like
RD1_3374	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3375	SSF51395	FMN-linked oxidoreductases
RD1_3376	SSF51230	Single hybrid motif
RD1_3376	SSF51246	Rudiment single hybrid motif
RD1_3376	SSF51569	Aldolase
RD1_3376	SSF52440	PreATP-grasp domain
RD1_3376	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_3376	SSF89000	post-HMGL domain-like
RD1_3377	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_3380	SSF53098	Ribonuclease H-like
RD1_3381	SSF53098	Ribonuclease H-like
RD1_3382	SSF103088	OmpA-like
RD1_3384	SSF110857	Gamma-glutamyl cyclotransferase-like
RD1_3387	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_3387	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3388	SSF53383	PLP-dependent transferases
RD1_3391	SSF55174	Alpha-L RNA-binding motif
RD1_3392	SSF48150	DNA-glycosylase
RD1_3393	SSF141868	EAL domain-like
RD1_3394	SSF53901	Thiolase-like
RD1_3395	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3397	SSF46785	"Winged helix" DNA-binding domain
RD1_3397	SSF53850	Periplasmic binding protein-like II
RD1_3399	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3400	SSF54913	GlnB-like
RD1_3401	SSF48576	Terpenoid synthases
RD1_3402	SSF54211	Ribosomal protein S5 domain 2-like
RD1_3402	SSF55060	GHMP Kinase, C-terminal domain
RD1_3403	SSF48452	TPR-like
RD1_3404	SSF51905	FAD/NAD(P)-binding domain
RD1_3404	SSF54373	FAD-linked reductases, C-terminal domain
RD1_3404	SSF54862	4Fe-4S ferredoxins
RD1_3405	SSF46557	GreA transcript cleavage protein, N-terminal domain
RD1_3405	SSF54534	FKBP-like
RD1_3407	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_3407	SSF63867	MoeA C-terminal domain-like
RD1_3407	SSF63882	MoeA N-terminal region -like
RD1_3408	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3409	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_3410	SSF53927	Cytidine deaminase-like
RD1_3414	SSF81469	Bacterial aa3 type cytochrome c oxidase subunit IV
RD1_3416	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_3417	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3417	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3418	SSF55821	YrdC/RibB
RD1_3419	SSF143456	VC0467-like
RD1_3421	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RD1_3421	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RD1_3421	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RD1_3422	SSF111369	HlyD-like secretion proteins
RD1_3423	SSF53218	Molybdenum cofactor biosynthesis proteins
RD1_3425	SSF52141	Uracil-DNA glycosylase-like
RD1_3427	SSF53671	Aspartate/ornithine carbamoyltransferase
RD1_3429	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3429	SSF51556	Metallo-dependent hydrolases
RD1_3431	SSF51182	RmlC-like cupins
RD1_3432	SSF51430	NAD(P)-linked oxidoreductase
RD1_3433	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3434	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_3434	SSF103025	Folate-binding domain
RD1_3434	SSF51905	FAD/NAD(P)-binding domain
RD1_3434	SSF54373	FAD-linked reductases, C-terminal domain
RD1_3435	SSF55103	FAD-linked oxidases, C-terminal domain
RD1_3435	SSF56176	FAD-binding/transporter-associated domain-like
RD1_3436	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_3437	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3437	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_3439	SSF50129	GroES-like
RD1_3439	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3446	SSF47413	lambda repressor-like DNA-binding domains
RD1_3447	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3448	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3449	SSF53098	Ribonuclease H-like
RD1_3450	SSF46689	Homeodomain-like
RD1_3452	SSF53098	Ribonuclease H-like
RD1_3456	SSF48295	TrpR-like
RD1_3457	SSF53098	Ribonuclease H-like
RD1_3460	SSF51120	beta-Roll
RD1_3461	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3461	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3462	SSF52172	CheY-like
RD1_3464	SSF110997	Sporulation related repeat
RD1_3465	SSF56601	beta-lactamase/transpeptidase-like
RD1_3465	SSF69189	Penicillin-binding protein associated domain
RD1_3466	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3467	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3468	SSF51556	Metallo-dependent hydrolases
RD1_3469	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_3472	SSF55920	Creatinase/aminopeptidase
RD1_3473	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_3474	SSF53092	Creatinase/prolidase N-terminal domain
RD1_3474	SSF55920	Creatinase/aminopeptidase
RD1_3475	SSF53187	Zn-dependent exopeptidases
RD1_3476	SSF56784	HAD-like
RD1_3479	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_3480	SSF53807	"Helical backbone" metal receptor
RD1_3481	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3484	SSF111369	HlyD-like secretion proteins
RD1_3487	SSF46785	"Winged helix" DNA-binding domain
RD1_3489	SSF53474	alpha/beta-Hydrolases
RD1_3490	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
RD1_3490	SSF52335	Methylglyoxal synthase-like
RD1_3490	SSF52440	PreATP-grasp domain
RD1_3490	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_3492	SSF53901	Thiolase-like
RD1_3494	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3494	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RD1_3495	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3495	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_3496	SSF50249	Nucleic acid-binding proteins
RD1_3497	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_3497	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3502	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3503	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RD1_3504	SSF46785	"Winged helix" DNA-binding domain
RD1_3504	SSF54909	Dimeric alpha+beta barrel
RD1_3505	SSF51905	FAD/NAD(P)-binding domain
RD1_3506	SSF48264	Cytochrome P450
RD1_3508	SSF49764	HSP20-like chaperones
RD1_3510	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
RD1_3511	SSF51246	Rudiment single hybrid motif
RD1_3511	SSF52440	PreATP-grasp domain
RD1_3511	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_3512	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3512	SSF51556	Metallo-dependent hydrolases
RD1_3513	SSF53474	alpha/beta-Hydrolases
RD1_3514	SSF55811	Nudix
RD1_3515	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_3516	SSF48592	GroEL equatorial domain-like
RD1_3516	SSF52029	GroEL apical domain-like
RD1_3516	SSF54849	GroEL-intermediate domain like
RD1_3517	SSF50129	GroES-like
RD1_3520	SSF64182	DHH phosphoesterases
RD1_3521	SSF56784	HAD-like
RD1_3522	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_3523	SSF52374	Nucleotidylyl transferase
RD1_3523	SSF82114	Riboflavin kinase-like
RD1_3525	SSF53383	PLP-dependent transferases
RD1_3526	SSF53474	alpha/beta-Hydrolases
RD1_3527	SSF52833	Thioredoxin-like
RD1_3528	SSF53271	PRTase-like
RD1_3530	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_3532	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
RD1_3533	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RD1_3533	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RD1_3533	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3534	SSF52943	ATP synthase (F1-ATPase), gamma subunit
RD1_3535	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RD1_3535	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RD1_3535	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3536	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
RD1_3538	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3539	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_3540	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3540	SSF81923	Double Clp-N motif
RD1_3542	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3543	SSF56918	Light-harvesting complex subunits
RD1_3544	SSF56918	Light-harvesting complex subunits
RD1_3545	SSF103473	MFS general substrate transporter
RD1_3555	SSF54909	Dimeric alpha+beta barrel
RD1_3556	SSF54211	Ribosomal protein S5 domain 2-like
RD1_3557	SSF52317	Class I glutamine amidotransferase-like
RD1_3560	SSF51366	Ribulose-phoshate binding barrel
RD1_3561	SSF51366	Ribulose-phoshate binding barrel
RD1_3562	SSF101386	all-alpha NTP pyrophosphatases
RD1_3563	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3565	SSF55315	L30e-like
RD1_3565	SSF75217	alpha/beta knot
RD1_3567	SSF109755	PhoU-like
RD1_3568	SSF56300	Metallo-dependent phosphatases
RD1_3569	SSF161098	MetI-like
RD1_3570	SSF161098	MetI-like
RD1_3571	SSF53850	Periplasmic binding protein-like II
RD1_3572	SSF50331	MOP-like
RD1_3572	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3573	SSF100950	NagB/RpiA/CoA transferase-like
RD1_3573	SSF46785	"Winged helix" DNA-binding domain
RD1_3577	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
RD1_3577	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3577	SSF52172	CheY-like
RD1_3577	SSF55785	PYP-like sensor domain (PAS domain)
RD1_3577	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3578	SSF56524	Oxidoreductase molybdopterin-binding domain
RD1_3579	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_3579	SSF52172	CheY-like
RD1_3582	SSF158472	HAMP domain-like
RD1_3582	SSF55785	PYP-like sensor domain (PAS domain)
RD1_3582	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
RD1_3583	SSF46689	Homeodomain-like
RD1_3584	SSF53067	Actin-like ATPase domain
RD1_3587	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3588	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3591	SSF53822	Periplasmic binding protein-like I
RD1_3593	SSF111369	HlyD-like secretion proteins
RD1_3594	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_3594	SSF52172	CheY-like
RD1_3595	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3595	SSF52172	CheY-like
RD1_3595	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3596	SSF53822	Periplasmic binding protein-like I
RD1_3600	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3601	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3602	SSF141130	Acetamidase/Formamidase-like
RD1_3610	SSF53613	Ribokinase-like
RD1_3611	SSF51391	Thiamin phosphate synthase
RD1_3612	SSF53613	Ribokinase-like
RD1_3613	SSF48613	Heme oxygenase-like
RD1_3614	SSF100950	NagB/RpiA/CoA transferase-like
RD1_3614	SSF46785	"Winged helix" DNA-binding domain
RD1_3615	SSF56796	Dehydroquinate synthase-like
RD1_3616	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3617	SSF53067	Actin-like ATPase domain
RD1_3618	SSF56784	HAD-like
RD1_3619	SSF161098	MetI-like
RD1_3620	SSF161098	MetI-like
RD1_3621	SSF53850	Periplasmic binding protein-like II
RD1_3622	SSF50331	MOP-like
RD1_3622	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3623	SSF50129	GroES-like
RD1_3623	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3624	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
RD1_3625	SSF51351	Triosephosphate isomerase (TIM)
RD1_3626	SSF51658	Xylose isomerase-like
RD1_3628	SSF56784	HAD-like
RD1_3629	SSF53067	Actin-like ATPase domain
RD1_3630	SSF53639	AraD/HMP-PK domain-like
RD1_3631	SSF51905	FAD/NAD(P)-binding domain
RD1_3632	SSF53639	AraD/HMP-PK domain-like
RD1_3633	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3633	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_3634	SSF53067	Actin-like ATPase domain
RD1_3635	SSF50331	MOP-like
RD1_3635	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3636	SSF50331	MOP-like
RD1_3636	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3638	SSF161098	MetI-like
RD1_3639	SSF161098	MetI-like
RD1_3640	SSF53850	Periplasmic binding protein-like II
RD1_3641	SSF100950	NagB/RpiA/CoA transferase-like
RD1_3642	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3642	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_3643	SSF53383	PLP-dependent transferases
RD1_3645	SSF53649	Alkaline phosphatase-like
RD1_3647	SSF53850	Periplasmic binding protein-like II
RD1_3649	SSF46785	"Winged helix" DNA-binding domain
RD1_3649	SSF55781	GAF domain-like
RD1_3650	SSF46785	"Winged helix" DNA-binding domain
RD1_3651	SSF51182	RmlC-like cupins
RD1_3652	SSF47616	GST C-terminal domain-like
RD1_3652	SSF52833	Thioredoxin-like
RD1_3653	SSF56529	FAH
RD1_3653	SSF63433	Fumarylacetoacetate hydrolase, FAH, N-terminal domain
RD1_3654	SSF81342	Transmembrane di-heme cytochromes
RD1_3657	SSF56322	ADC synthase
RD1_3658	SSF54909	Dimeric alpha+beta barrel
RD1_3659	SSF47644	Methionine synthase domain
RD1_3659	SSF51717	Dihydropteroate synthetase-like
RD1_3659	SSF52242	Cobalamin (vitamin B12)-binding domain
RD1_3659	SSF56507	Methionine synthase activation domain-like
RD1_3660	SSF82282	Homocysteine S-methyltransferase
RD1_3662	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_3663	SSF69118	AhpD-like
RD1_3664	SSF46626	Cytochrome c
RD1_3664	SSF50692	ADC-like
RD1_3664	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_3665	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_3665	SSF52172	CheY-like
RD1_3666	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
RD1_3666	SSF47384	Homodimeric domain of signal transducing histidine kinase
RD1_3666	SSF52172	CheY-like
RD1_3666	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3668	SSF53822	Periplasmic binding protein-like I
RD1_3670	SSF51905	FAD/NAD(P)-binding domain
RD1_3670	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RD1_3671	SSF52833	Thioredoxin-like
RD1_3673	SSF46689	Homeodomain-like
RD1_3673	SSF48498	Tetracyclin repressor-like, C-terminal domain
RD1_3674	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_3675	SSF51261	Duplicated hybrid motif
RD1_3675	SSF53383	PLP-dependent transferases
RD1_3675	SSF56112	Protein kinase-like (PK-like)
RD1_3676	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3676	SSF51556	Metallo-dependent hydrolases
RD1_3677	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3677	SSF51556	Metallo-dependent hydrolases
RD1_3678	SSF48557	L-aspartase-like
RD1_3679	SSF53187	Zn-dependent exopeptidases
RD1_3680	SSF89796	CoA-transferase family III (CaiB/BaiF)
RD1_3681	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3681	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3682	SSF111326	Urocanase
RD1_3683	SSF50022	ISP domain
RD1_3683	SSF55961	Bet v1-like
RD1_3684	SSF51197	Clavaminate synthase-like
RD1_3687	SSF46626	Cytochrome c
RD1_3688	SSF50952	Soluble quinoprotein glucose dehydrogenase
RD1_3690	SSF47781	RuvA domain 2-like
RD1_3693	SSF143975	IlvD/EDD N-terminal domain-like
RD1_3693	SSF52016	LeuD/IlvD-like
RD1_3695	SSF53187	Zn-dependent exopeptidases
RD1_3696	SSF110942	HSP90 C-terminal domain
RD1_3696	SSF54211	Ribosomal protein S5 domain 2-like
RD1_3696	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RD1_3698	SSF51206	cAMP-binding domain-like
RD1_3699	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3700	SSF141868	EAL domain-like
RD1_3700	SSF55073	Nucleotide cyclase
RD1_3700	SSF55785	PYP-like sensor domain (PAS domain)
RD1_3702	SSF101473	DhaL-like
RD1_3702	SSF82549	DAK1/DegV-like
RD1_3703	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3703	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_3704	SSF53067	Actin-like ATPase domain
RD1_3705	SSF51658	Xylose isomerase-like
RD1_3706	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3706	SSF51905	FAD/NAD(P)-binding domain
RD1_3706	SSF54427	NTF2-like
RD1_3708	SSF53850	Periplasmic binding protein-like II
RD1_3710	SSF54427	NTF2-like
RD1_3713	SSF56784	HAD-like
RD1_3714	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_3715	SSF51011	Glycosyl hydrolase domain
RD1_3715	SSF51445	(Trans)glycosidases
RD1_3716	SSF63829	Calcium-dependent phosphotriesterase
RD1_3718	SSF161098	MetI-like
RD1_3719	SSF161098	MetI-like
RD1_3720	SSF53850	Periplasmic binding protein-like II
RD1_3721	SSF50331	MOP-like
RD1_3721	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3722	SSF47413	lambda repressor-like DNA-binding domains
RD1_3722	SSF53822	Periplasmic binding protein-like I
RD1_3724	SSF56988	Anthrax protective antigen
RD1_3725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3725	SSF90123	ABC transporter transmembrane region
RD1_3726	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3726	SSF90123	ABC transporter transmembrane region
RD1_3728	SSF51230	Single hybrid motif
RD1_3730	SSF56112	Protein kinase-like (PK-like)
RD1_3731	SSF50956	Thermostable phytase (3-phytase)
RD1_3733	SSF50182	Sm-like ribonucleoproteins
RD1_3733	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
RD1_3733	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
RD1_3737	SSF53613	Ribokinase-like
RD1_3738	SSF102546	RbsD-like
RD1_3739	SSF50331	MOP-like
RD1_3739	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3740	SSF53850	Periplasmic binding protein-like II
RD1_3742	SSF160964	MalF N-terminal region-like
RD1_3742	SSF161098	MetI-like
RD1_3743	SSF161098	MetI-like
RD1_3744	SSF53649	Alkaline phosphatase-like
RD1_3749	SSF160935	VPA0735-like
RD1_3751	SSF46785	"Winged helix" DNA-binding domain
RD1_3751	SSF51206	cAMP-binding domain-like
RD1_3753	SSF82282	Homocysteine S-methyltransferase
RD1_3755	SSF51430	NAD(P)-linked oxidoreductase
RD1_3756	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3759	SSF46785	"Winged helix" DNA-binding domain
RD1_3759	SSF53850	Periplasmic binding protein-like II
RD1_3760	SSF53067	Actin-like ATPase domain
RD1_3762	SSF51430	NAD(P)-linked oxidoreductase
RD1_3763	SSF51556	Metallo-dependent hydrolases
RD1_3764	SSF53613	Ribokinase-like
RD1_3765	SSF51658	Xylose isomerase-like
RD1_3769	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_3773	SSF69118	AhpD-like
RD1_3774	SSF49482	Aromatic compound dioxygenase
RD1_3775	SSF49482	Aromatic compound dioxygenase
RD1_3776	SSF53067	Actin-like ATPase domain
RD1_3777	SSF47616	GST C-terminal domain-like
RD1_3777	SSF52833	Thioredoxin-like
RD1_3778	SSF53383	PLP-dependent transferases
RD1_3780	SSF52016	LeuD/IlvD-like
RD1_3782	SSF46689	Homeodomain-like
RD1_3782	SSF52317	Class I glutamine amidotransferase-like
RD1_3783	SSF51658	Xylose isomerase-like
RD1_3784	SSF53639	AraD/HMP-PK domain-like
RD1_3785	SSF142764	YgbK-like
RD1_3786	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_3786	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3787	SSF46785	"Winged helix" DNA-binding domain
RD1_3787	SSF48008	GntR ligand-binding domain-like
RD1_3788	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3788	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_3789	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RD1_3790	SSF54909	Dimeric alpha+beta barrel
RD1_3791	SSF56281	Metallo-hydrolase/oxidoreductase
RD1_3793	SSF54111	Urease, gamma-subunit
RD1_3795	SSF51278	Urease, beta-subunit
RD1_3797	SSF102198	Putative cyclase
RD1_3798	SSF69118	AhpD-like
RD1_3800	SSF51338	Composite domain of metallo-dependent hydrolases
RD1_3800	SSF51556	Metallo-dependent hydrolases
RD1_3803	SSF69287	Urease metallochaperone UreE, N-terminal domain
RD1_3803	SSF69737	Urease metallochaperone UreE, C-terminal domain
RD1_3805	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3806	SSF50129	GroES-like
RD1_3806	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3807	SSF47413	lambda repressor-like DNA-binding domains
RD1_3807	SSF53822	Periplasmic binding protein-like I
RD1_3808	SSF53720	ALDH-like
RD1_3809	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3810	SSF50129	GroES-like
RD1_3810	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3811	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_3812	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_3813	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RD1_3814	SSF51395	FMN-linked oxidoreductases
RD1_3815	SSF55469	FMN-dependent nitroreductase-like
RD1_3816	SSF53790	Tetrapyrrole methylase
RD1_3817	SSF53790	Tetrapyrrole methylase
RD1_3818	SSF52317	Class I glutamine amidotransferase-like
RD1_3818	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3819	SSF53790	Tetrapyrrole methylase
RD1_3820	SSF159664	CobE/GbiG C-terminal domain-like
RD1_3821	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3821	SSF53790	Tetrapyrrole methylase
RD1_3823	SSF53790	Tetrapyrrole methylase
RD1_3824	SSF53790	Tetrapyrrole methylase
RD1_3825	SSF63965	Precorrin-8X methylmutase CbiC/CobH
RD1_3826	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
RD1_3826	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
RD1_3828	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3828	SSF90002	Hypothetical protein YjiA, C-terminal domain
RD1_3829	SSF52833	Thioredoxin-like
RD1_3831	SSF53067	Actin-like ATPase domain
RD1_3832	SSF56024	Phospholipase D/nuclease
RD1_3833	SSF56219	DNase I-like
RD1_3835	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3837	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3840	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3842	SSF51126	Pectin lyase-like
RD1_3845	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_3848	SSF53795	PEP carboxykinase-like
RD1_3849	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_3849	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_3852	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3852	SSF90123	ABC transporter transmembrane region
RD1_3854	SSF47413	lambda repressor-like DNA-binding domains
RD1_3854	SSF51182	RmlC-like cupins
RD1_3858	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_3858	SSF103025	Folate-binding domain
RD1_3860	SSF51604	Enolase C-terminal domain-like
RD1_3860	SSF54826	Enolase N-terminal domain-like
RD1_3861	SSF51905	FAD/NAD(P)-binding domain
RD1_3861	SSF54373	FAD-linked reductases, C-terminal domain
RD1_3862	SSF161098	MetI-like
RD1_3863	SSF161098	MetI-like
RD1_3864	SSF50331	MOP-like
RD1_3864	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3865	SSF53850	Periplasmic binding protein-like II
RD1_3866	SSF51905	FAD/NAD(P)-binding domain
RD1_3867	SSF46785	"Winged helix" DNA-binding domain
RD1_3867	SSF53850	Periplasmic binding protein-like II
RD1_3868	SSF51182	RmlC-like cupins
RD1_3869	SSF46689	Homeodomain-like
RD1_3870	SSF53474	alpha/beta-Hydrolases
RD1_3871	SSF51679	Bacterial luciferase-like
RD1_3872	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3873	SSF51658	Xylose isomerase-like
RD1_3874	SSF51658	Xylose isomerase-like
RD1_3876	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3876	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RD1_3877	SSF49785	Galactose-binding domain-like
RD1_3878	SSF53613	Ribokinase-like
RD1_3880	SSF50331	MOP-like
RD1_3880	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3881	SSF161098	MetI-like
RD1_3882	SSF161098	MetI-like
RD1_3883	SSF53850	Periplasmic binding protein-like II
RD1_3884	SSF50331	MOP-like
RD1_3884	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3886	SSF51658	Xylose isomerase-like
RD1_3887	SSF47413	lambda repressor-like DNA-binding domains
RD1_3887	SSF53822	Periplasmic binding protein-like I
RD1_3888	SSF102546	RbsD-like
RD1_3889	SSF101473	DhaL-like
RD1_3889	SSF82549	DAK1/DegV-like
RD1_3890	SSF109910	YgfY-like
RD1_3891	SSF47413	lambda repressor-like DNA-binding domains
RD1_3892	SSF53383	PLP-dependent transferases
RD1_3893	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3893	SSF81271	TGS-like
RD1_3895	SSF51366	Ribulose-phoshate binding barrel
RD1_3896	SSF51395	FMN-linked oxidoreductases
RD1_3897	SSF103473	MFS general substrate transporter
RD1_3898	SSF50715	Ribosomal protein L25-like
RD1_3900	SSF53178	Peptidyl-tRNA hydrolase-like
RD1_3903	SSF56601	beta-lactamase/transpeptidase-like
RD1_3906	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_3907	SSF51366	Ribulose-phoshate binding barrel
RD1_3910	SSF47729	IHF-like DNA-binding proteins
RD1_3911	SSF50249	Nucleic acid-binding proteins
RD1_3912	SSF69635	Type III secretory system chaperone-like
RD1_3913	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3914	SSF55205	EPT/RTPC-like
RD1_3915	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_3916	SSF55973	S-adenosylmethionine synthetase
RD1_3917	SSF56317	Carbon-nitrogen hydrolase
RD1_3918	SSF54631	CBS-domain pair
RD1_3918	SSF56176	FAD-binding/transporter-associated domain-like
RD1_3919	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_3920	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3921	SSF102114	Radical SAM enzymes
RD1_3922	SSF46785	"Winged helix" DNA-binding domain
RD1_3923	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_3924	SSF53901	Thiolase-like
RD1_3925	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3928	SSF54534	FKBP-like
RD1_3929	SSF56784	HAD-like
RD1_3930	SSF53474	alpha/beta-Hydrolases
RD1_3931	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RD1_3932	SSF53474	alpha/beta-Hydrolases
RD1_3934	SSF53474	alpha/beta-Hydrolases
RD1_3935	SSF48557	L-aspartase-like
RD1_3936	SSF103473	MFS general substrate transporter
RD1_3937	SSF50129	GroES-like
RD1_3937	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3939	SSF51604	Enolase C-terminal domain-like
RD1_3939	SSF54826	Enolase N-terminal domain-like
RD1_3940	SSF89562	RraA-like
RD1_3941	SSF51726	UROD/MetE-like
RD1_3942	SSF51182	RmlC-like cupins
RD1_3943	SSF54427	NTF2-like
RD1_3944	SSF47413	lambda repressor-like DNA-binding domains
RD1_3944	SSF53822	Periplasmic binding protein-like I
RD1_3945	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3946	SSF54427	NTF2-like
RD1_3948	SSF53720	ALDH-like
RD1_3949	SSF54427	NTF2-like
RD1_3950	SSF161098	MetI-like
RD1_3951	SSF161098	MetI-like
RD1_3953	SSF53850	Periplasmic binding protein-like II
RD1_3954	SSF50331	MOP-like
RD1_3954	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_3956	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3956	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3957	SSF46785	"Winged helix" DNA-binding domain
RD1_3957	SSF53850	Periplasmic binding protein-like II
RD1_3958	SSF143081	BB1717-like
RD1_3959	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
RD1_3959	SSF56300	Metallo-dependent phosphatases
RD1_3960	SSF56399	ADP-ribosylation
RD1_3961	SSF51395	FMN-linked oxidoreductases
RD1_3963	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_3964	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RD1_3965	SSF46955	Putative DNA-binding domain
RD1_3967	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_3967	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
RD1_3968	SSF46955	Putative DNA-binding domain
RD1_3969	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3969	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3970	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
RD1_3970	SSF56645	Acyl-CoA dehydrogenase NM domain-like
RD1_3971	SSF47616	GST C-terminal domain-like
RD1_3971	SSF52833	Thioredoxin-like
RD1_3972	SSF53901	Thiolase-like
RD1_3973	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_3973	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3973	SSF52096	ClpP/crotonase
RD1_3974	SSF56801	Acetyl-CoA synthetase-like
RD1_3976	SSF53271	PRTase-like
RD1_3978	SSF143856	DeoB insert domain-like
RD1_3978	SSF53649	Alkaline phosphatase-like
RD1_3979	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
RD1_3979	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
RD1_3979	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
RD1_3980	SSF53927	Cytidine deaminase-like
RD1_3981	SSF51182	RmlC-like cupins
RD1_3986	SSF56801	Acetyl-CoA synthetase-like
RD1_3987	SSF69047	Hypothetical protein YjbJ
RD1_3989	SSF111331	NAD kinase/diacylglycerol kinase-like
RD1_3991	SSF53383	PLP-dependent transferases
RD1_3995	SSF51182	RmlC-like cupins
RD1_3996	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_3997	SSF46785	"Winged helix" DNA-binding domain
RD1_3997	SSF48008	GntR ligand-binding domain-like
RD1_3998	SSF51120	beta-Roll
RD1_3999	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_3999	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_4002	SSF52743	Subtilisin-like
RD1_4004	SSF53807	"Helical backbone" metal receptor
RD1_4005	SSF46785	"Winged helix" DNA-binding domain
RD1_4006	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4007	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_4008	SSF54001	Cysteine proteinases
RD1_4009	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_4011	SSF50199	Staphylococcal nuclease
RD1_4012	SSF50447	Translation proteins
RD1_4012	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RD1_4012	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4013	SSF50447	Translation proteins
RD1_4013	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4013	SSF54211	Ribosomal protein S5 domain 2-like
RD1_4013	SSF54980	EF-G C-terminal domain-like
RD1_4014	SSF47973	Ribosomal protein S7
RD1_4015	SSF50249	Nucleic acid-binding proteins
RD1_4016	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_4018	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RD1_4019	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RD1_4020	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
RD1_4020	SSF54736	ClpS-like
RD1_4021	SSF160369	Ribosomal protein L10-like
RD1_4022	SSF56808	Ribosomal protein L1
RD1_4023	SSF46906	Ribosomal protein L11, C-terminal domain
RD1_4023	SSF54747	Ribosomal L11/L12e N-terminal domain
RD1_4024	SSF50104	Translation proteins SH3-like domain
RD1_4024	SSF82679	N-utilization substance G protein NusG, N-terminal domain
RD1_4030	SSF161098	MetI-like
RD1_4031	SSF50331	MOP-like
RD1_4031	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4033	SSF53850	Periplasmic binding protein-like II
RD1_4034	SSF51120	beta-Roll
RD1_4036	SSF101874	YceI-like
RD1_4037	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RD1_4037	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RD1_4041	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4042	SSF53098	Ribonuclease H-like
RD1_4047	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4048	SSF53098	Ribonuclease H-like
RD1_4053	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_4054	SSF116734	DNA methylase specificity domain
RD1_4055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4059	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4061	SSF47413	lambda repressor-like DNA-binding domains
RD1_4061	SSF51998	PFL-like glycyl radical enzymes
RD1_4063	SSF53850	Periplasmic binding protein-like II
RD1_4064	SSF55681	Class II aaRS and biotin synthetases
RD1_4065	SSF52954	Class II aaRS ABD-related
RD1_4065	SSF55681	Class II aaRS and biotin synthetases
RD1_4067	SSF89550	PHP domain-like
RD1_4068	SSF47741	CO dehydrogenase ISP C-domain like
RD1_4068	SSF54292	2Fe-2S ferredoxin-like
RD1_4068	SSF55447	CO dehydrogenase flavoprotein C-terminal domain-like
RD1_4068	SSF56176	FAD-binding/transporter-associated domain-like
RD1_4069	SSF54665	CO dehydrogenase molybdoprotein N-domain-like
RD1_4069	SSF56003	Molybdenum cofactor-binding domain
RD1_4070	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4071	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4076	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_4077	SSF55931	Glutamine synthetase/guanido kinase
RD1_4081	SSF103088	OmpA-like
RD1_4082	SSF46579	Prefoldin
RD1_4083	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_4084	SSF54690	Molybdopterin synthase subunit MoaE
RD1_4085	SSF54285	MoaD/ThiS
RD1_4089	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4091	SSF52096	ClpP/crotonase
RD1_4093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4094	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_4095	SSF54211	Ribosomal protein S5 domain 2-like
RD1_4096	SSF50129	GroES-like
RD1_4096	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4098	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
RD1_4098	SSF54292	2Fe-2S ferredoxin-like
RD1_4098	SSF54862	4Fe-4S ferredoxins
RD1_4098	SSF63380	Riboflavin synthase domain-like
RD1_4099	SSF51905	FAD/NAD(P)-binding domain
RD1_4099	SSF54373	FAD-linked reductases, C-terminal domain
RD1_4103	SSF46785	"Winged helix" DNA-binding domain
RD1_4103	SSF55781	GAF domain-like
RD1_4104	SSF54001	Cysteine proteinases
RD1_4106	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_4107	SSF49785	Galactose-binding domain-like
RD1_4108	SSF81324	Voltage-gated potassium channels
RD1_4109	SSF52402	Adenine nucleotide alpha hydrolases-like
RD1_4111	SSF53850	Periplasmic binding protein-like II
RD1_4112	SSF101790	Aminomethyltransferase beta-barrel domain
RD1_4112	SSF103025	Folate-binding domain
RD1_4112	SSF51905	FAD/NAD(P)-binding domain
RD1_4112	SSF54373	FAD-linked reductases, C-terminal domain
RD1_4113	SSF53383	PLP-dependent transferases
RD1_4115	SSF46785	"Winged helix" DNA-binding domain
RD1_4117	SSF161098	MetI-like
RD1_4118	SSF161098	MetI-like
RD1_4119	SSF50331	MOP-like
RD1_4119	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4120	SSF50331	MOP-like
RD1_4120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4122	SSF53850	Periplasmic binding protein-like II
RD1_4125	SSF51120	beta-Roll
RD1_4125	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_4128	SSF53850	Periplasmic binding protein-like II
RD1_4131	SSF50331	MOP-like
RD1_4131	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4132	SSF161098	MetI-like
RD1_4133	SSF161098	MetI-like
RD1_4134	SSF53850	Periplasmic binding protein-like II
RD1_4135	SSF52768	Arginase/deacetylase
RD1_4136	SSF51905	FAD/NAD(P)-binding domain
RD1_4138	SSF55298	YjgF-like
RD1_4139	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RD1_4140	SSF46785	"Winged helix" DNA-binding domain
RD1_4140	SSF53850	Periplasmic binding protein-like II
RD1_4141	SSF51395	FMN-linked oxidoreductases
RD1_4141	SSF51971	Nucleotide-binding domain
RD1_4142	SSF51905	FAD/NAD(P)-binding domain
RD1_4143	SSF53187	Zn-dependent exopeptidases
RD1_4143	SSF55031	Bacterial exopeptidase dimerisation domain
RD1_4146	SSF46785	"Winged helix" DNA-binding domain
RD1_4146	SSF53850	Periplasmic binding protein-like II
RD1_4147	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RD1_4148	SSF46626	Cytochrome c
RD1_4149	SSF46785	"Winged helix" DNA-binding domain
RD1_4149	SSF53850	Periplasmic binding protein-like II
RD1_4150	SSF49472	Transthyretin (synonym: prealbumin)
RD1_4151	SSF158694	UraD-Like
RD1_4151	SSF88713	Glycoside hydrolase/deacetylase
RD1_4152	SSF51182	RmlC-like cupins
RD1_4154	SSF49695	gamma-Crystallin-like
RD1_4156	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
RD1_4157	SSF46689	Homeodomain-like
RD1_4159	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4160	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RD1_4160	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4161	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4162	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_4164	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4164	SSF53790	Tetrapyrrole methylase
RD1_4164	SSF75615	Siroheme synthase middle domains-like
RD1_4166	SSF50692	ADC-like
RD1_4166	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_4167	SSF50022	ISP domain
RD1_4168	SSF51905	FAD/NAD(P)-binding domain
RD1_4168	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
RD1_4168	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
RD1_4169	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4170	SSF161098	MetI-like
RD1_4172	SSF53850	Periplasmic binding protein-like II
RD1_4173	SSF53850	Periplasmic binding protein-like II
RD1_4174	SSF52172	CheY-like
RD1_4175	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RD1_4176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4178	SSF103473	MFS general substrate transporter
RD1_4180	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_4181	SSF46785	"Winged helix" DNA-binding domain
RD1_4181	SSF53850	Periplasmic binding protein-like II
RD1_4188	SSF144064	Heme iron utilization protein-like
RD1_4189	SSF53807	"Helical backbone" metal receptor
RD1_4190	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RD1_4191	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4192	SSF54909	Dimeric alpha+beta barrel
RD1_4193	SSF56935	Porins
RD1_4194	SSF55486	Metalloproteases ("zincins"), catalytic domain
RD1_4199	SSF74653	TolA/TonB C-terminal domain
RD1_4201	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4203	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4204	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_4205	SSF51269	AFP III-like domain
RD1_4205	SSF51569	Aldolase
RD1_4207	SSF53448	Nucleotide-diphospho-sugar transferases
RD1_4207	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RD1_4210	SSF141868	EAL domain-like
RD1_4210	SSF55073	Nucleotide cyclase
RD1_4210	SSF55785	PYP-like sensor domain (PAS domain)
RD1_4213	SSF53850	Periplasmic binding protein-like II
RD1_4214	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RD1_4222	SSF69255	gp5 N-terminal domain-like
RD1_4222	SSF69279	Phage tail proteins
RD1_4224	SSF160719	gpW/gp25-like
RD1_4231	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4233	SSF140490	Nqo1C-terminal domain-like
RD1_4233	SSF142019	Nqo1 FMN-binding domain-like
RD1_4233	SSF142984	Nqo1 middle domain-like
RD1_4233	SSF52833	Thioredoxin-like
RD1_4234	SSF50692	ADC-like
RD1_4234	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RD1_4234	SSF54292	2Fe-2S ferredoxin-like
RD1_4234	SSF54862	4Fe-4S ferredoxins
RD1_4235	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RD1_4236	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4236	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_4237	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4237	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RD1_4238	SSF103481	Multidrug resistance efflux transporter EmrE
RD1_4240	SSF46458	Globin-like
RD1_4241	SSF82544	GckA/TtuD-like
RD1_4242	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_4243	SSF46894	C-terminal effector domain of the bipartite response regulators
RD1_4243	SSF52172	CheY-like
RD1_4244	SSF53383	PLP-dependent transferases
RD1_4245	SSF52210	Succinyl-CoA synthetase domains
RD1_4245	SSF56059	Glutathione synthetase ATP-binding domain-like
RD1_4246	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4246	SSF52210	Succinyl-CoA synthetase domains
RD1_4247	SSF51735	NAD(P)-binding Rossmann-fold domains
RD1_4247	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RD1_4248	SSF51621	Phosphoenolpyruvate/pyruvate domain
RD1_4249	SSF53383	PLP-dependent transferases
RD1_4250	SSF54368	Glutamine synthetase, N-terminal domain
RD1_4250	SSF55931	Glutamine synthetase/guanido kinase
RD1_4251	SSF51395	FMN-linked oxidoreductases
RD1_4252	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
RD1_4253	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)