Runsl_0004	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_0020	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_0045	PWY-6857	retinol biosynthesis
Runsl_0072	PWY-7560	methylerythritol phosphate pathway II
Runsl_0074	PWY-6788	cellulose degradation II (fungi)
Runsl_0094	PWY-1042	glycolysis IV (plant cytosol)
Runsl_0094	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Runsl_0094	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_0094	PWY-7385	1,3-propanediol biosynthesis (engineered)
Runsl_0135	PWY-622	starch biosynthesis
Runsl_0137	PWY-6749	CMP-legionaminate biosynthesis I
Runsl_0139	PWY-7158	L-phenylalanine degradation V
Runsl_0153	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_0153	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Runsl_0153	PWY-6596	adenosine nucleotides degradation I
Runsl_0153	PWY-6606	guanosine nucleotides degradation II
Runsl_0153	PWY-6607	guanosine nucleotides degradation I
Runsl_0153	PWY-6608	guanosine nucleotides degradation III
Runsl_0153	PWY-7185	UTP and CTP dephosphorylation I
Runsl_0162	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Runsl_0162	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_0162	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Runsl_0162	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Runsl_0162	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_0162	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_0162	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_0162	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Runsl_0164	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Runsl_0174	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Runsl_0174	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Runsl_0175	PWY-5839	menaquinol-7 biosynthesis
Runsl_0175	PWY-5844	menaquinol-9 biosynthesis
Runsl_0175	PWY-5849	menaquinol-6 biosynthesis
Runsl_0175	PWY-5890	menaquinol-10 biosynthesis
Runsl_0175	PWY-5891	menaquinol-11 biosynthesis
Runsl_0175	PWY-5892	menaquinol-12 biosynthesis
Runsl_0175	PWY-5895	menaquinol-13 biosynthesis
Runsl_0182	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Runsl_0182	PWY-2201	folate transformations I
Runsl_0182	PWY-3841	folate transformations II
Runsl_0182	PWY-5030	L-histidine degradation III
Runsl_0182	PWY-5497	purine nucleobases degradation II (anaerobic)
Runsl_0182	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Runsl_0185	PWY-4983	L-citrulline-nitric oxide cycle
Runsl_0185	PWY-4984	urea cycle
Runsl_0185	PWY-5	canavanine biosynthesis
Runsl_0185	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_0185	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_0201	PWY-6703	preQ<sub>0</sub> biosynthesis
Runsl_0202	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Runsl_0202	PWY-5723	Rubisco shunt
Runsl_0224	PWY-6610	adenine and adenosine salvage IV
Runsl_0226	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_0283	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Runsl_0361	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Runsl_0373	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Runsl_0376	PWY-3821	galactose degradation III
Runsl_0376	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_0376	PWY-6527	stachyose degradation
Runsl_0385	PWY-7560	methylerythritol phosphate pathway II
Runsl_0386	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Runsl_0386	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Runsl_0386	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Runsl_0386	PWY-6406	salicylate biosynthesis I
Runsl_0389	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_0389	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Runsl_0408	PWY-2941	L-lysine biosynthesis II
Runsl_0408	PWY-2942	L-lysine biosynthesis III
Runsl_0408	PWY-5097	L-lysine biosynthesis VI
Runsl_0408	PWY-6559	spermidine biosynthesis II
Runsl_0408	PWY-6562	norspermidine biosynthesis
Runsl_0408	PWY-7153	grixazone biosynthesis
Runsl_0415	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_0473	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Runsl_0473	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Runsl_0507	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_0507	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Runsl_0507	PWY-6936	seleno-amino acid biosynthesis
Runsl_0507	PWY-702	L-methionine biosynthesis II
Runsl_0517	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_0521	PWY-1361	benzoyl-CoA degradation I (aerobic)
Runsl_0521	PWY-2361	3-oxoadipate degradation
Runsl_0521	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Runsl_0527	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Runsl_0528	PWY-6123	inosine-5'-phosphate biosynthesis I
Runsl_0528	PWY-6124	inosine-5'-phosphate biosynthesis II
Runsl_0528	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_0528	PWY-7234	inosine-5'-phosphate biosynthesis III
Runsl_0540	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_0542	PWY-6749	CMP-legionaminate biosynthesis I
Runsl_0587	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_0596	PWY-282	cuticular wax biosynthesis
Runsl_0597	PWY-6840	homoglutathione biosynthesis
Runsl_0597	PWY-7255	ergothioneine biosynthesis I (bacteria)
Runsl_0614	PWY-6871	3-methylbutanol biosynthesis
Runsl_0615	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Runsl_0615	PWY-7494	choline degradation IV
Runsl_0633	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_0656	PWY-4261	glycerol degradation I
Runsl_0659	PWY-3341	L-proline biosynthesis III
Runsl_0659	PWY-4981	L-proline biosynthesis II (from arginine)
Runsl_0659	PWY-6344	L-ornithine degradation II (Stickland reaction)
Runsl_0659	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Runsl_0710	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Runsl_0710	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Runsl_0710	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Runsl_0723	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_0723	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Runsl_0742	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Runsl_0744	PWY-6871	3-methylbutanol biosynthesis
Runsl_0754	PWY-5101	L-isoleucine biosynthesis II
Runsl_0754	PWY-5103	L-isoleucine biosynthesis III
Runsl_0754	PWY-5104	L-isoleucine biosynthesis IV
Runsl_0754	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Runsl_0756	PWY-5101	L-isoleucine biosynthesis II
Runsl_0756	PWY-5103	L-isoleucine biosynthesis III
Runsl_0756	PWY-5104	L-isoleucine biosynthesis IV
Runsl_0756	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Runsl_0756	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Runsl_0756	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Runsl_0756	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Runsl_0757	PWY-5101	L-isoleucine biosynthesis II
Runsl_0757	PWY-5103	L-isoleucine biosynthesis III
Runsl_0757	PWY-5104	L-isoleucine biosynthesis IV
Runsl_0757	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Runsl_0757	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Runsl_0757	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Runsl_0757	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Runsl_0758	PWY-5101	L-isoleucine biosynthesis II
Runsl_0758	PWY-5103	L-isoleucine biosynthesis III
Runsl_0758	PWY-5104	L-isoleucine biosynthesis IV
Runsl_0758	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Runsl_0760	PWY-1042	glycolysis IV (plant cytosol)
Runsl_0760	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Runsl_0760	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_0760	PWY-5723	Rubisco shunt
Runsl_0760	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_0760	PWY-6886	1-butanol autotrophic biosynthesis
Runsl_0760	PWY-6901	superpathway of glucose and xylose degradation
Runsl_0760	PWY-7003	glycerol degradation to butanol
Runsl_0760	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Runsl_0760	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Runsl_0765	PWY-5958	acridone alkaloid biosynthesis
Runsl_0765	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Runsl_0765	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Runsl_0774	PWY-6700	queuosine biosynthesis
Runsl_0777	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Runsl_0777	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Runsl_0795	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_0817	PWY-6654	phosphopantothenate biosynthesis III
Runsl_0824	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_0824	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_0824	PWY-7560	methylerythritol phosphate pathway II
Runsl_0839	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Runsl_0839	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Runsl_0839	PWY-5989	stearate biosynthesis II (bacteria and plants)
Runsl_0839	PWY-5994	palmitate biosynthesis I (animals and fungi)
Runsl_0839	PWY-6113	superpathway of mycolate biosynthesis
Runsl_0839	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Runsl_0839	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Runsl_0839	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_0839	PWYG-321	mycolate biosynthesis
Runsl_0843	PWY-6936	seleno-amino acid biosynthesis
Runsl_0903	PWY-7199	pyrimidine deoxyribonucleosides salvage
Runsl_0917	PWY-5155	&beta;-alanine biosynthesis III
Runsl_0922	PWY-3341	L-proline biosynthesis III
Runsl_0922	PWY-4981	L-proline biosynthesis II (from arginine)
Runsl_0922	PWY-6344	L-ornithine degradation II (Stickland reaction)
Runsl_0925	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Runsl_0925	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Runsl_0925	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Runsl_0925	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Runsl_0948	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_0962	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_0962	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_0966	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_0966	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_1018	PWY-5839	menaquinol-7 biosynthesis
Runsl_1018	PWY-5851	demethylmenaquinol-9 biosynthesis
Runsl_1018	PWY-5852	demethylmenaquinol-8 biosynthesis I
Runsl_1018	PWY-5853	demethylmenaquinol-6 biosynthesis I
Runsl_1018	PWY-5890	menaquinol-10 biosynthesis
Runsl_1018	PWY-5891	menaquinol-11 biosynthesis
Runsl_1018	PWY-5892	menaquinol-12 biosynthesis
Runsl_1018	PWY-5895	menaquinol-13 biosynthesis
Runsl_1019	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_1019	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_1023	PWY-6823	molybdenum cofactor biosynthesis
Runsl_1024	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Runsl_1024	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_1024	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Runsl_1024	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Runsl_1024	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_1024	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_1024	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_1024	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Runsl_1032	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_1054	PWY-2941	L-lysine biosynthesis II
Runsl_1054	PWY-2942	L-lysine biosynthesis III
Runsl_1054	PWY-5097	L-lysine biosynthesis VI
Runsl_1054	PWY-6559	spermidine biosynthesis II
Runsl_1054	PWY-6562	norspermidine biosynthesis
Runsl_1054	PWY-7153	grixazone biosynthesis
Runsl_1056	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Runsl_1082	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_1082	PWY-6549	L-glutamine biosynthesis III
Runsl_1082	PWY-6728	methylaspartate cycle
Runsl_1082	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_1082	PWY-7124	ethylene biosynthesis V (engineered)
Runsl_1082	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_1082	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Runsl_1089	PWY-4261	glycerol degradation I
Runsl_1092	PWY-5194	siroheme biosynthesis
Runsl_1092	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Runsl_1103	PWY-6749	CMP-legionaminate biosynthesis I
Runsl_1113	PWY-7039	phosphatidate metabolism, as a signaling molecule
Runsl_1122	PWY-6825	phosphatidylcholine biosynthesis V
Runsl_1146	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Runsl_1146	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Runsl_1164	PWY-5316	nicotine biosynthesis
Runsl_1164	PWY-7342	superpathway of nicotine biosynthesis
Runsl_1198	PWY-6497	D-galactarate degradation II
Runsl_1200	PWY-7242	D-fructuronate degradation
Runsl_1268	PWY-6562	norspermidine biosynthesis
Runsl_1274	PWY-4381	fatty acid biosynthesis initiation I
Runsl_1286	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Runsl_1286	PWY-5723	Rubisco shunt
Runsl_1313	PWY-5686	UMP biosynthesis
Runsl_1376	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Runsl_1376	PWY-622	starch biosynthesis
Runsl_1402	PWY-6174	mevalonate pathway II (archaea)
Runsl_1402	PWY-7391	isoprene biosynthesis II (engineered)
Runsl_1402	PWY-7524	mevalonate pathway III (archaea)
Runsl_1402	PWY-922	mevalonate pathway I
Runsl_1404	PWY-6788	cellulose degradation II (fungi)
Runsl_1431	PWY-4041	&gamma;-glutamyl cycle
Runsl_1431	PWY-5826	hypoglycin biosynthesis
Runsl_1435	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Runsl_1453	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Runsl_1453	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Runsl_1472	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_1472	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_1475	PWY-6123	inosine-5'-phosphate biosynthesis I
Runsl_1475	PWY-6124	inosine-5'-phosphate biosynthesis II
Runsl_1475	PWY-7234	inosine-5'-phosphate biosynthesis III
Runsl_1480	PWY-6853	ethylene biosynthesis II (microbes)
Runsl_1492	PWY-1622	formaldehyde assimilation I (serine pathway)
Runsl_1492	PWY-181	photorespiration
Runsl_1492	PWY-2161	folate polyglutamylation
Runsl_1492	PWY-2201	folate transformations I
Runsl_1492	PWY-3661	glycine betaine degradation I
Runsl_1492	PWY-3661-1	glycine betaine degradation II (mammalian)
Runsl_1492	PWY-3841	folate transformations II
Runsl_1492	PWY-5497	purine nucleobases degradation II (anaerobic)
Runsl_1501	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_1501	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Runsl_1512	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
Runsl_1512	PWY-5739	GDP-D-perosamine biosynthesis
Runsl_1512	PWY-5740	GDP-L-colitose biosynthesis
Runsl_1512	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Runsl_1526	PWY-5839	menaquinol-7 biosynthesis
Runsl_1526	PWY-5844	menaquinol-9 biosynthesis
Runsl_1526	PWY-5849	menaquinol-6 biosynthesis
Runsl_1526	PWY-5890	menaquinol-10 biosynthesis
Runsl_1526	PWY-5891	menaquinol-11 biosynthesis
Runsl_1526	PWY-5892	menaquinol-12 biosynthesis
Runsl_1526	PWY-5895	menaquinol-13 biosynthesis
Runsl_1554	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Runsl_1554	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_1554	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Runsl_1554	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Runsl_1585	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Runsl_1585	PWY-6855	chitin degradation I (archaea)
Runsl_1585	PWY-6906	chitin derivatives degradation
Runsl_1592	PWY-6700	queuosine biosynthesis
Runsl_1593	PWY-7560	methylerythritol phosphate pathway II
Runsl_1608	PWY-6823	molybdenum cofactor biosynthesis
Runsl_1608	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_1608	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_1608	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Runsl_1618	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_1620	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_1621	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_1624	PWY-1622	formaldehyde assimilation I (serine pathway)
Runsl_1624	PWY-5392	reductive TCA cycle II
Runsl_1624	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Runsl_1624	PWY-5690	TCA cycle II (plants and fungi)
Runsl_1624	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_1624	PWY-6728	methylaspartate cycle
Runsl_1624	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_1624	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Runsl_1624	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Runsl_1654	PWY-5686	UMP biosynthesis
Runsl_1672	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_1672	PWY-5686	UMP biosynthesis
Runsl_1672	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_1704	PWY-2201	folate transformations I
Runsl_1704	PWY-5497	purine nucleobases degradation II (anaerobic)
Runsl_1715	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Runsl_1715	PWY-6153	autoinducer AI-2 biosynthesis I
Runsl_1715	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Runsl_1716	PWY-6483	ceramide degradation
Runsl_1716	PWY-7119	sphingolipid recycling and degradation (yeast)
Runsl_1717	PWY-4381	fatty acid biosynthesis initiation I
Runsl_1717	PWY-5743	3-hydroxypropanoate cycle
Runsl_1717	PWY-5744	glyoxylate assimilation
Runsl_1717	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_1717	PWY-6679	jadomycin biosynthesis
Runsl_1717	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_1723	PWY-5839	menaquinol-7 biosynthesis
Runsl_1723	PWY-5844	menaquinol-9 biosynthesis
Runsl_1723	PWY-5849	menaquinol-6 biosynthesis
Runsl_1723	PWY-5890	menaquinol-10 biosynthesis
Runsl_1723	PWY-5891	menaquinol-11 biosynthesis
Runsl_1723	PWY-5892	menaquinol-12 biosynthesis
Runsl_1723	PWY-5895	menaquinol-13 biosynthesis
Runsl_1746	PWY-1361	benzoyl-CoA degradation I (aerobic)
Runsl_1746	PWY-5109	2-methylbutanoate biosynthesis
Runsl_1746	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Runsl_1746	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Runsl_1746	PWY-5177	glutaryl-CoA degradation
Runsl_1746	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_1746	PWY-6435	4-hydroxybenzoate biosynthesis V
Runsl_1746	PWY-6583	pyruvate fermentation to butanol I
Runsl_1746	PWY-6863	pyruvate fermentation to hexanol
Runsl_1746	PWY-6883	pyruvate fermentation to butanol II
Runsl_1746	PWY-6944	androstenedione degradation
Runsl_1746	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Runsl_1746	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Runsl_1746	PWY-7007	methyl ketone biosynthesis
Runsl_1746	PWY-7046	4-coumarate degradation (anaerobic)
Runsl_1746	PWY-7094	fatty acid salvage
Runsl_1746	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Runsl_1746	PWY-735	jasmonic acid biosynthesis
Runsl_1746	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Runsl_1754	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_1763	PWY-5686	UMP biosynthesis
Runsl_1765	PWY-1622	formaldehyde assimilation I (serine pathway)
Runsl_1765	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Runsl_1765	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_1765	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_1765	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Runsl_1765	PWY-6549	L-glutamine biosynthesis III
Runsl_1765	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Runsl_1765	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Runsl_1765	PWY-7124	ethylene biosynthesis V (engineered)
Runsl_1768	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Runsl_1768	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Runsl_1768	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Runsl_1775	PWY-4381	fatty acid biosynthesis initiation I
Runsl_1775	PWY-5743	3-hydroxypropanoate cycle
Runsl_1775	PWY-5744	glyoxylate assimilation
Runsl_1775	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_1775	PWY-6679	jadomycin biosynthesis
Runsl_1775	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_1780	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_1780	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_1781	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Runsl_1781	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Runsl_1781	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Runsl_1781	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Runsl_1783	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_1783	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_1787	PWY-5686	UMP biosynthesis
Runsl_1801	PWY-6599	guanine and guanosine salvage II
Runsl_1801	PWY-6609	adenine and adenosine salvage III
Runsl_1801	PWY-6610	adenine and adenosine salvage IV
Runsl_1801	PWY-6620	guanine and guanosine salvage
Runsl_1822	PWY-6902	chitin degradation II
Runsl_1862	PWY-7193	pyrimidine ribonucleosides salvage I
Runsl_1877	PWY-4983	L-citrulline-nitric oxide cycle
Runsl_1877	PWY-4984	urea cycle
Runsl_1877	PWY-5	canavanine biosynthesis
Runsl_1877	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_1877	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_1885	PWY-3221	dTDP-L-rhamnose biosynthesis II
Runsl_1885	PWY-6808	dTDP-D-forosamine biosynthesis
Runsl_1885	PWY-6942	dTDP-D-desosamine biosynthesis
Runsl_1885	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Runsl_1885	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Runsl_1885	PWY-6974	dTDP-L-olivose biosynthesis
Runsl_1885	PWY-6976	dTDP-L-mycarose biosynthesis
Runsl_1885	PWY-7104	dTDP-L-megosamine biosynthesis
Runsl_1885	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Runsl_1885	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Runsl_1885	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Runsl_1885	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Runsl_1885	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Runsl_1885	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Runsl_1885	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Runsl_1885	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Runsl_1886	PWY-6167	flavin biosynthesis II (archaea)
Runsl_1886	PWY-6168	flavin biosynthesis III (fungi)
Runsl_1886	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_1891	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Runsl_1891	PWY-6855	chitin degradation I (archaea)
Runsl_1891	PWY-6906	chitin derivatives degradation
Runsl_1892	PWY-6906	chitin derivatives degradation
Runsl_1892	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Runsl_1892	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Runsl_1897	PWY-6483	ceramide degradation
Runsl_1897	PWY-7119	sphingolipid recycling and degradation (yeast)
Runsl_1905	PWY-7533	gliotoxin biosynthesis
Runsl_1927	PWY-381	nitrate reduction II (assimilatory)
Runsl_1927	PWY-5675	nitrate reduction V (assimilatory)
Runsl_1927	PWY-6549	L-glutamine biosynthesis III
Runsl_1927	PWY-6963	ammonia assimilation cycle I
Runsl_1927	PWY-6964	ammonia assimilation cycle II
Runsl_1929	PWY-6854	ethylene biosynthesis III (microbes)
Runsl_1931	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Runsl_1931	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Runsl_1932	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_1932	PWY-3461	L-tyrosine biosynthesis II
Runsl_1932	PWY-3462	L-phenylalanine biosynthesis II
Runsl_1932	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_1932	PWY-6120	L-tyrosine biosynthesis III
Runsl_1932	PWY-6627	salinosporamide A biosynthesis
Runsl_1994	PWY-6854	ethylene biosynthesis III (microbes)
Runsl_1998	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Runsl_1998	PWY-622	starch biosynthesis
Runsl_2004	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Runsl_2004	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Runsl_2004	PWY-6896	thiamin salvage I
Runsl_2004	PWY-6897	thiamin salvage II
Runsl_2012	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Runsl_2012	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Runsl_2022	PWY-6167	flavin biosynthesis II (archaea)
Runsl_2022	PWY-6168	flavin biosynthesis III (fungi)
Runsl_2028	PWY-5686	UMP biosynthesis
Runsl_2040	PWY-6454	vancomycin resistance I
Runsl_2040	PWY-6455	vancomycin resistance II
Runsl_2043	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_2043	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_2050	PWY-5958	acridone alkaloid biosynthesis
Runsl_2050	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Runsl_2050	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Runsl_2053	PWY-6482	diphthamide biosynthesis (archaea)
Runsl_2053	PWY-7546	diphthamide biosynthesis (eukaryotes)
Runsl_2098	PWY-6167	flavin biosynthesis II (archaea)
Runsl_2098	PWY-6168	flavin biosynthesis III (fungi)
Runsl_2098	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Runsl_2104	PWY-3961	phosphopantothenate biosynthesis II
Runsl_2105	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_2125	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Runsl_2132	PWY-5278	sulfite oxidation III
Runsl_2132	PWY-5340	sulfate activation for sulfonation
Runsl_2132	PWY-6683	sulfate reduction III (assimilatory)
Runsl_2132	PWY-6932	selenate reduction
Runsl_2133	PWY-5278	sulfite oxidation III
Runsl_2133	PWY-5340	sulfate activation for sulfonation
Runsl_2133	PWY-6683	sulfate reduction III (assimilatory)
Runsl_2133	PWY-6932	selenate reduction
Runsl_2164	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Runsl_2166	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Runsl_2177	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Runsl_2183	PWY-6349	CDP-archaeol biosynthesis
Runsl_2187	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_2206	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
Runsl_2207	PWY-7560	methylerythritol phosphate pathway II
Runsl_2209	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Runsl_2212	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_2223	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Runsl_2223	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Runsl_2223	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Runsl_2235	PWY-5367	petroselinate biosynthesis
Runsl_2235	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Runsl_2235	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Runsl_2235	PWY-5989	stearate biosynthesis II (bacteria and plants)
Runsl_2235	PWY-5994	palmitate biosynthesis I (animals and fungi)
Runsl_2235	PWY-6113	superpathway of mycolate biosynthesis
Runsl_2235	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Runsl_2235	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Runsl_2235	PWY-6951	Runsl_2235
Runsl_2235	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Runsl_2235	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_2235	PWYG-321	mycolate biosynthesis
Runsl_2240	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_2240	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_2245	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Runsl_2246	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Runsl_2250	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_2262	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Runsl_2262	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
Runsl_2262	PWY-6920	6-gingerol analog biosynthesis
Runsl_2262	PWY-7007	methyl ketone biosynthesis
Runsl_2262	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
Runsl_2262	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
Runsl_2262	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Runsl_2262	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Runsl_2262	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Runsl_2262	PWY-735	jasmonic acid biosynthesis
Runsl_2277	PWY-6902	chitin degradation II
Runsl_2283	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Runsl_2283	PWY-7248	pectin degradation III
Runsl_2285	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Runsl_2285	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Runsl_2285	PWY-7242	D-fructuronate degradation
Runsl_2285	PWY-7310	D-glucosaminate degradation
Runsl_2288	PWY-1042	glycolysis IV (plant cytosol)
Runsl_2288	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_2288	PWY-6886	1-butanol autotrophic biosynthesis
Runsl_2288	PWY-6901	superpathway of glucose and xylose degradation
Runsl_2288	PWY-7003	glycerol degradation to butanol
Runsl_2294	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Runsl_2325	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_2325	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_2327	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_2327	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_2334	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Runsl_2334	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Runsl_2367	PWY-6012	acyl carrier protein metabolism I
Runsl_2367	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Runsl_2369	PWY-3821	galactose degradation III
Runsl_2369	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_2369	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Runsl_2369	PWY-6527	stachyose degradation
Runsl_2369	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Runsl_2369	PWY-7344	UDP-D-galactose biosynthesis
Runsl_2370	PWY-3221	dTDP-L-rhamnose biosynthesis II
Runsl_2370	PWY-6808	dTDP-D-forosamine biosynthesis
Runsl_2370	PWY-6942	dTDP-D-desosamine biosynthesis
Runsl_2370	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Runsl_2370	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Runsl_2370	PWY-6974	dTDP-L-olivose biosynthesis
Runsl_2370	PWY-6976	dTDP-L-mycarose biosynthesis
Runsl_2370	PWY-7104	dTDP-L-megosamine biosynthesis
Runsl_2370	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Runsl_2370	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Runsl_2370	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Runsl_2370	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Runsl_2370	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Runsl_2370	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Runsl_2370	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Runsl_2370	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Runsl_2377	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Runsl_2377	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Runsl_2377	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_2377	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_2377	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Runsl_2377	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Runsl_2377	PWY-7205	CMP phosphorylation
Runsl_2377	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Runsl_2377	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_2377	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_2377	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_2377	PWY-7224	purine deoxyribonucleosides salvage
Runsl_2377	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_2377	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Runsl_2381	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Runsl_2384	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Runsl_2384	PWY-6148	tetrahydromethanopterin biosynthesis
Runsl_2384	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Runsl_2384	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Runsl_2386	PWY-6454	vancomycin resistance I
Runsl_2386	PWY-6455	vancomycin resistance II
Runsl_2393	PWY-6164	3-dehydroquinate biosynthesis I
Runsl_2403	PWY-5686	UMP biosynthesis
Runsl_2437	PWY-6683	sulfate reduction III (assimilatory)
Runsl_2438	PWY-5194	siroheme biosynthesis
Runsl_2438	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Runsl_2492	PWY-5147	oleate biosynthesis I (plants)
Runsl_2497	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Runsl_2497	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_2497	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Runsl_2497	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Runsl_2498	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_2522	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_2522	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Runsl_2525	PWY-5958	acridone alkaloid biosynthesis
Runsl_2525	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Runsl_2525	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Runsl_2527	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_2527	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Runsl_2535	PWY-6683	sulfate reduction III (assimilatory)
Runsl_2536	PWY-5194	siroheme biosynthesis
Runsl_2536	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Runsl_2561	PWY-7242	D-fructuronate degradation
Runsl_2581	PWY-6683	sulfate reduction III (assimilatory)
Runsl_2592	PWY-1042	glycolysis IV (plant cytosol)
Runsl_2592	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Runsl_2592	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_2592	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_2592	PWY-7385	1,3-propanediol biosynthesis (engineered)
Runsl_2608	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Runsl_2608	PWY-6855	chitin degradation I (archaea)
Runsl_2608	PWY-6906	chitin derivatives degradation
Runsl_2641	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_2654	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Runsl_2654	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Runsl_2654	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Runsl_2658	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Runsl_2666	PWY-3841	folate transformations II
Runsl_2666	PWY-6614	tetrahydrofolate biosynthesis
Runsl_2676	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Runsl_2676	PWY-7118	chitin degradation to ethanol
Runsl_2687	PWY-4381	fatty acid biosynthesis initiation I
Runsl_2717	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Runsl_2770	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_2797	PWY-6902	chitin degradation II
Runsl_2821	PWY-2941	L-lysine biosynthesis II
Runsl_2821	PWY-2942	L-lysine biosynthesis III
Runsl_2821	PWY-5097	L-lysine biosynthesis VI
Runsl_2821	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_2821	PWY-6559	spermidine biosynthesis II
Runsl_2821	PWY-6562	norspermidine biosynthesis
Runsl_2821	PWY-7153	grixazone biosynthesis
Runsl_2821	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_2835	PWY-5491	diethylphosphate degradation
Runsl_2844	PWY-7242	D-fructuronate degradation
Runsl_2869	PWY-381	nitrate reduction II (assimilatory)
Runsl_2869	PWY-5675	nitrate reduction V (assimilatory)
Runsl_2869	PWY-6549	L-glutamine biosynthesis III
Runsl_2869	PWY-6963	ammonia assimilation cycle I
Runsl_2869	PWY-6964	ammonia assimilation cycle II
Runsl_2899	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Runsl_2899	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Runsl_2905	PWY-5392	reductive TCA cycle II
Runsl_2905	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Runsl_2905	PWY-5690	TCA cycle II (plants and fungi)
Runsl_2905	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_2905	PWY-6728	methylaspartate cycle
Runsl_2905	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_2905	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_2905	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_2969	PWY-3781	aerobic respiration I (cytochrome c)
Runsl_2969	PWY-4521	arsenite oxidation I (respiratory)
Runsl_2969	PWY-6692	Fe(II) oxidation
Runsl_2969	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Runsl_2985	PWY-7205	CMP phosphorylation
Runsl_3003	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Runsl_3004	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Runsl_3005	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Runsl_3005	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Runsl_3015	PWY-5659	GDP-mannose biosynthesis
Runsl_3015	PWY-6073	alginate biosynthesis I (algal)
Runsl_3015	PWY-6082	alginate biosynthesis II (bacterial)
Runsl_3015	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Runsl_3019	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Runsl_3036	PWY-3801	sucrose degradation II (sucrose synthase)
Runsl_3036	PWY-6527	stachyose degradation
Runsl_3036	PWY-6981	chitin biosynthesis
Runsl_3036	PWY-7238	sucrose biosynthesis II
Runsl_3036	PWY-7343	UDP-glucose biosynthesis
Runsl_3038	PWY-702	L-methionine biosynthesis II
Runsl_3042	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Runsl_3042	PWY-6148	tetrahydromethanopterin biosynthesis
Runsl_3042	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Runsl_3042	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Runsl_3047	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Runsl_3047	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Runsl_3047	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Runsl_3083	PWY-2941	L-lysine biosynthesis II
Runsl_3083	PWY-2942	L-lysine biosynthesis III
Runsl_3083	PWY-5097	L-lysine biosynthesis VI
Runsl_3085	PWY-5530	sorbitol biosynthesis II
Runsl_3119	PWY-6483	ceramide degradation
Runsl_3119	PWY-7119	sphingolipid recycling and degradation (yeast)
Runsl_3138	PWY-5057	L-valine degradation II
Runsl_3138	PWY-5076	L-leucine degradation III
Runsl_3138	PWY-5078	L-isoleucine degradation II
Runsl_3138	PWY-5101	L-isoleucine biosynthesis II
Runsl_3138	PWY-5103	L-isoleucine biosynthesis III
Runsl_3138	PWY-5104	L-isoleucine biosynthesis IV
Runsl_3138	PWY-5108	L-isoleucine biosynthesis V
Runsl_3140	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Runsl_3140	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Runsl_3140	PWY-6268	adenosylcobalamin salvage from cobalamin
Runsl_3140	PWY-6269	adenosylcobalamin salvage from cobinamide II
Runsl_3143	PWY-5101	L-isoleucine biosynthesis II
Runsl_3143	PWY-5103	L-isoleucine biosynthesis III
Runsl_3143	PWY-5104	L-isoleucine biosynthesis IV
Runsl_3143	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Runsl_3149	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Runsl_3149	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Runsl_3155	PWY-4981	L-proline biosynthesis II (from arginine)
Runsl_3157	PWY-4981	L-proline biosynthesis II (from arginine)
Runsl_3158	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_3158	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_3161	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Runsl_3161	PWY-7177	UTP and CTP dephosphorylation II
Runsl_3161	PWY-7185	UTP and CTP dephosphorylation I
Runsl_3164	PWY-4381	fatty acid biosynthesis initiation I
Runsl_3164	PWY-5743	3-hydroxypropanoate cycle
Runsl_3164	PWY-5744	glyoxylate assimilation
Runsl_3164	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_3164	PWY-6679	jadomycin biosynthesis
Runsl_3164	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_3189	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Runsl_3233	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_3234	PWY-7456	mannan degradation
Runsl_3241	PWY-5941	glycogen degradation II (eukaryotic)
Runsl_3241	PWY-622	starch biosynthesis
Runsl_3241	PWY-6731	starch degradation III
Runsl_3241	PWY-6737	starch degradation V
Runsl_3241	PWY-7238	sucrose biosynthesis II
Runsl_3247	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Runsl_3247	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Runsl_3247	PWY-6897	thiamin salvage II
Runsl_3247	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Runsl_3247	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Runsl_3247	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Runsl_3247	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Runsl_3382	PWY-4261	glycerol degradation I
Runsl_3388	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_3388	PWY-6549	L-glutamine biosynthesis III
Runsl_3388	PWY-6728	methylaspartate cycle
Runsl_3388	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_3388	PWY-7124	ethylene biosynthesis V (engineered)
Runsl_3388	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_3388	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Runsl_3413	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_3438	PWY-101	photosynthesis light reactions
Runsl_3438	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Runsl_3458	PWY-6902	chitin degradation II
Runsl_3511	PWY-6898	thiamin salvage III
Runsl_3511	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Runsl_3511	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Runsl_3514	PWY-5392	reductive TCA cycle II
Runsl_3514	PWY-5537	pyruvate fermentation to acetate V
Runsl_3514	PWY-5538	pyruvate fermentation to acetate VI
Runsl_3514	PWY-5690	TCA cycle II (plants and fungi)
Runsl_3514	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_3514	PWY-6728	methylaspartate cycle
Runsl_3514	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_3514	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_3516	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_3516	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Runsl_3526	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_3586	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_3617	PWY-43	putrescine biosynthesis II
Runsl_3643	PWY-7456	mannan degradation
Runsl_3645	PWY-7456	mannan degradation
Runsl_3647	PWY-7456	mannan degradation
Runsl_3656	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_3656	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_3656	PWY-7560	methylerythritol phosphate pathway II
Runsl_3684	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_3684	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_3711	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_3722	PWY-5316	nicotine biosynthesis
Runsl_3722	PWY-7342	superpathway of nicotine biosynthesis
Runsl_3729	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Runsl_3729	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Runsl_3741	PWY-4261	glycerol degradation I
Runsl_3752	PWY-2721	trehalose degradation III
Runsl_3752	PWY-2722	trehalose degradation IV
Runsl_3752	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_3752	PWY-7459	kojibiose degradation
Runsl_3786	PWY-4381	fatty acid biosynthesis initiation I
Runsl_3787	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Runsl_3787	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Runsl_3787	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Runsl_3788	PWY-5669	phosphatidylethanolamine biosynthesis I
Runsl_3816	PWY-5667	CDP-diacylglycerol biosynthesis I
Runsl_3816	PWY-5981	CDP-diacylglycerol biosynthesis III
Runsl_3843	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_3843	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Runsl_3843	PWY-6596	adenosine nucleotides degradation I
Runsl_3843	PWY-6606	guanosine nucleotides degradation II
Runsl_3843	PWY-6607	guanosine nucleotides degradation I
Runsl_3843	PWY-6608	guanosine nucleotides degradation III
Runsl_3843	PWY-7185	UTP and CTP dephosphorylation I
Runsl_3869	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_3876	PWY-5743	3-hydroxypropanoate cycle
Runsl_3876	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_3876	PWY-6728	methylaspartate cycle
Runsl_3876	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_3878	PWY-3461	L-tyrosine biosynthesis II
Runsl_3878	PWY-3462	L-phenylalanine biosynthesis II
Runsl_3878	PWY-6120	L-tyrosine biosynthesis III
Runsl_3878	PWY-6627	salinosporamide A biosynthesis
Runsl_3878	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Runsl_3880	PWY-6902	chitin degradation II
Runsl_3923	PWY-4381	fatty acid biosynthesis initiation I
Runsl_3923	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Runsl_3923	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_3971	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_3971	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_3971	PWY-7560	methylerythritol phosphate pathway II
Runsl_3975	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_3980	PWY-5988	wound-induced proteolysis I
Runsl_3980	PWY-6018	seed germination protein turnover
Runsl_4007	PWY-4381	fatty acid biosynthesis initiation I
Runsl_4028	PWY-3801	sucrose degradation II (sucrose synthase)
Runsl_4028	PWY-5054	sorbitol biosynthesis I
Runsl_4028	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Runsl_4028	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Runsl_4028	PWY-5659	GDP-mannose biosynthesis
Runsl_4028	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_4028	PWY-621	sucrose degradation III (sucrose invertase)
Runsl_4028	PWY-622	starch biosynthesis
Runsl_4028	PWY-6531	mannitol cycle
Runsl_4028	PWY-6981	chitin biosynthesis
Runsl_4028	PWY-7238	sucrose biosynthesis II
Runsl_4028	PWY-7347	sucrose biosynthesis III
Runsl_4028	PWY-7385	1,3-propanediol biosynthesis (engineered)
Runsl_4033	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Runsl_4033	PWY-6855	chitin degradation I (archaea)
Runsl_4033	PWY-6906	chitin derivatives degradation
Runsl_4050	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Runsl_4050	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Runsl_4050	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Runsl_4094	PWY-6829	tRNA methylation (yeast)
Runsl_4094	PWY-7285	methylwyosine biosynthesis
Runsl_4094	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Runsl_4095	PWY-6938	NADH repair
Runsl_4107	PWY-5316	nicotine biosynthesis
Runsl_4107	PWY-5381	pyridine nucleotide cycling (plants)
Runsl_4107	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Runsl_4107	PWY-7342	superpathway of nicotine biosynthesis
Runsl_4116	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Runsl_4128	PWY-4202	arsenate detoxification I (glutaredoxin)
Runsl_4147	PWY-5392	reductive TCA cycle II
Runsl_4147	PWY-5537	pyruvate fermentation to acetate V
Runsl_4147	PWY-5538	pyruvate fermentation to acetate VI
Runsl_4147	PWY-5690	TCA cycle II (plants and fungi)
Runsl_4147	PWY-5913	TCA cycle VI (obligate autotrophs)
Runsl_4147	PWY-6728	methylaspartate cycle
Runsl_4147	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_4147	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_4158	PWY-381	nitrate reduction II (assimilatory)
Runsl_4158	PWY-5675	nitrate reduction V (assimilatory)
Runsl_4158	PWY-6549	L-glutamine biosynthesis III
Runsl_4158	PWY-6963	ammonia assimilation cycle I
Runsl_4158	PWY-6964	ammonia assimilation cycle II
Runsl_4163	PWY-6823	molybdenum cofactor biosynthesis
Runsl_4184	PWY-5367	petroselinate biosynthesis
Runsl_4184	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Runsl_4184	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Runsl_4184	PWY-5989	stearate biosynthesis II (bacteria and plants)
Runsl_4184	PWY-5994	palmitate biosynthesis I (animals and fungi)
Runsl_4184	PWY-6113	superpathway of mycolate biosynthesis
Runsl_4184	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Runsl_4184	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Runsl_4184	PWY-6951	Runsl_4184
Runsl_4184	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Runsl_4184	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_4184	PWYG-321	mycolate biosynthesis
Runsl_4187	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Runsl_4197	PWY-3961	phosphopantothenate biosynthesis II
Runsl_4212	PWY-6527	stachyose degradation
Runsl_4256	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_4259	PWY-7052	cyanophycin metabolism
Runsl_4260	PWY-7052	cyanophycin metabolism
Runsl_4293	PWY-5663	tetrahydrobiopterin biosynthesis I
Runsl_4293	PWY-5664	tetrahydrobiopterin biosynthesis II
Runsl_4293	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Runsl_4293	PWY-6703	preQ<sub>0</sub> biosynthesis
Runsl_4293	PWY-6983	tetrahydrobiopterin biosynthesis III
Runsl_4293	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Runsl_4300	PWY-3841	folate transformations II
Runsl_4300	PWY-6614	tetrahydrofolate biosynthesis
Runsl_4317	PWY-5669	phosphatidylethanolamine biosynthesis I
Runsl_4380	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_4383	PWY-6123	inosine-5'-phosphate biosynthesis I
Runsl_4383	PWY-6124	inosine-5'-phosphate biosynthesis II
Runsl_4383	PWY-7234	inosine-5'-phosphate biosynthesis III
Runsl_4390	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Runsl_4390	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Runsl_4390	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Runsl_4397	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Runsl_4397	PWY-5723	Rubisco shunt
Runsl_4419	PWY-3801	sucrose degradation II (sucrose synthase)
Runsl_4437	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_4437	PWY-5686	UMP biosynthesis
Runsl_4437	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_4443	PWY-6823	molybdenum cofactor biosynthesis
Runsl_4447	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_4447	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_4492	PWY-4261	glycerol degradation I
Runsl_4496	PWY-7560	methylerythritol phosphate pathway II
Runsl_4498	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_4498	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_4526	PWY-6164	3-dehydroquinate biosynthesis I
Runsl_4546	PWY-1042	glycolysis IV (plant cytosol)
Runsl_4546	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Runsl_4546	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_4546	PWY-5723	Rubisco shunt
Runsl_4546	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_4546	PWY-6886	1-butanol autotrophic biosynthesis
Runsl_4546	PWY-6901	superpathway of glucose and xylose degradation
Runsl_4546	PWY-7003	glycerol degradation to butanol
Runsl_4546	PWY-7124	ethylene biosynthesis V (engineered)
Runsl_4546	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Runsl_4547	PWY-6348	phosphate acquisition
Runsl_4547	PWY-6357	phosphate utilization in cell wall regeneration
Runsl_4547	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Runsl_4547	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Runsl_4549	PWY-1042	glycolysis IV (plant cytosol)
Runsl_4549	PWY-1622	formaldehyde assimilation I (serine pathway)
Runsl_4549	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Runsl_4549	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_4549	PWY-5723	Rubisco shunt
Runsl_4549	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_4549	PWY-6886	1-butanol autotrophic biosynthesis
Runsl_4549	PWY-6901	superpathway of glucose and xylose degradation
Runsl_4549	PWY-7003	glycerol degradation to butanol
Runsl_4549	PWY-7124	ethylene biosynthesis V (engineered)
Runsl_4549	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Runsl_4553	PWY-4381	fatty acid biosynthesis initiation I
Runsl_4553	PWY-5743	3-hydroxypropanoate cycle
Runsl_4553	PWY-5744	glyoxylate assimilation
Runsl_4553	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_4553	PWY-6679	jadomycin biosynthesis
Runsl_4553	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Runsl_4559	PWY-3821	galactose degradation III
Runsl_4559	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_4559	PWY-6527	stachyose degradation
Runsl_4560	PWY-4261	glycerol degradation I
Runsl_4560	PWY-6118	glycerol-3-phosphate shuttle
Runsl_4560	PWY-6952	glycerophosphodiester degradation
Runsl_4567	PWY-4202	arsenate detoxification I (glutaredoxin)
Runsl_4567	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Runsl_4567	PWY-6608	guanosine nucleotides degradation III
Runsl_4567	PWY-6609	adenine and adenosine salvage III
Runsl_4567	PWY-6611	adenine and adenosine salvage V
Runsl_4567	PWY-6620	guanine and guanosine salvage
Runsl_4567	PWY-6627	salinosporamide A biosynthesis
Runsl_4567	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Runsl_4567	PWY-7179	purine deoxyribonucleosides degradation I
Runsl_4567	PWY-7179-1	purine deoxyribonucleosides degradation
Runsl_4574	PWY-2161	folate polyglutamylation
Runsl_4576	PWY-1042	glycolysis IV (plant cytosol)
Runsl_4576	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_4576	PWY-6901	superpathway of glucose and xylose degradation
Runsl_4576	PWY-7003	glycerol degradation to butanol
Runsl_4584	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Runsl_4584	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Runsl_4586	PWY-7456	mannan degradation
Runsl_4598	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Runsl_4598	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Runsl_4604	PWY-6700	queuosine biosynthesis
Runsl_4617	PWY-3821	galactose degradation III
Runsl_4617	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_4617	PWY-6527	stachyose degradation
Runsl_4639	PWY-6936	seleno-amino acid biosynthesis
Runsl_4643	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Runsl_4643	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Runsl_4684	PWY-3221	dTDP-L-rhamnose biosynthesis II
Runsl_4684	PWY-6808	dTDP-D-forosamine biosynthesis
Runsl_4684	PWY-6942	dTDP-D-desosamine biosynthesis
Runsl_4684	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Runsl_4684	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Runsl_4684	PWY-6974	dTDP-L-olivose biosynthesis
Runsl_4684	PWY-6976	dTDP-L-mycarose biosynthesis
Runsl_4684	PWY-7104	dTDP-L-megosamine biosynthesis
Runsl_4684	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Runsl_4684	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Runsl_4684	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Runsl_4684	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Runsl_4684	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Runsl_4684	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Runsl_4684	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Runsl_4684	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Runsl_4685	PWY-3221	dTDP-L-rhamnose biosynthesis II
Runsl_4685	PWY-6808	dTDP-D-forosamine biosynthesis
Runsl_4685	PWY-6942	dTDP-D-desosamine biosynthesis
Runsl_4685	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Runsl_4685	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Runsl_4685	PWY-6974	dTDP-L-olivose biosynthesis
Runsl_4685	PWY-6976	dTDP-L-mycarose biosynthesis
Runsl_4685	PWY-7104	dTDP-L-megosamine biosynthesis
Runsl_4685	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Runsl_4685	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Runsl_4685	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Runsl_4685	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Runsl_4685	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Runsl_4685	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Runsl_4685	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Runsl_4685	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Runsl_4701	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Runsl_4701	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Runsl_4706	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_4707	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_4707	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Runsl_4724	PWY-3781	aerobic respiration I (cytochrome c)
Runsl_4724	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Runsl_4724	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Runsl_4724	PWY-5690	TCA cycle II (plants and fungi)
Runsl_4724	PWY-6728	methylaspartate cycle
Runsl_4724	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_4724	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_4724	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Runsl_4725	PWY-3781	aerobic respiration I (cytochrome c)
Runsl_4725	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Runsl_4725	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Runsl_4725	PWY-5690	TCA cycle II (plants and fungi)
Runsl_4725	PWY-6728	methylaspartate cycle
Runsl_4725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Runsl_4725	PWY-7254	TCA cycle VII (acetate-producers)
Runsl_4725	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Runsl_4749	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_4788	PWY-2781	<i>cis</i>-zeatin biosynthesis
Runsl_4794	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Runsl_4794	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Runsl_4794	PWY-6936	seleno-amino acid biosynthesis
Runsl_4794	PWY-702	L-methionine biosynthesis II
Runsl_4810	PWY-1281	sulfoacetaldehyde degradation I
Runsl_4810	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Runsl_4810	PWY-5482	pyruvate fermentation to acetate II
Runsl_4810	PWY-5485	pyruvate fermentation to acetate IV
Runsl_4810	PWY-5497	purine nucleobases degradation II (anaerobic)
Runsl_4810	PWY-6637	sulfolactate degradation II
Runsl_4810	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Runsl_4811	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Runsl_4811	PWY-6167	flavin biosynthesis II (archaea)
Runsl_4811	PWY-6168	flavin biosynthesis III (fungi)
Runsl_4817	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
Runsl_4863	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Runsl_4863	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Runsl_4868	PWY-5491	diethylphosphate degradation
Runsl_4923	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_4958	PWY-7533	gliotoxin biosynthesis
Runsl_4960	PWY-7039	phosphatidate metabolism, as a signaling molecule
Runsl_5000	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Runsl_5000	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Runsl_5014	PWY-7533	gliotoxin biosynthesis
Runsl_5021	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Runsl_5021	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Runsl_5021	PWY-7242	D-fructuronate degradation
Runsl_5021	PWY-7310	D-glucosaminate degradation
Runsl_5034	PWY-2723	trehalose degradation V
Runsl_5034	PWY-6317	galactose degradation I (Leloir pathway)
Runsl_5034	PWY-6737	starch degradation V
Runsl_5044	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Runsl_5094	PWY-1361	benzoyl-CoA degradation I (aerobic)
Runsl_5094	PWY-5109	2-methylbutanoate biosynthesis
Runsl_5094	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Runsl_5094	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Runsl_5094	PWY-5177	glutaryl-CoA degradation
Runsl_5094	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_5094	PWY-6435	4-hydroxybenzoate biosynthesis V
Runsl_5094	PWY-6583	pyruvate fermentation to butanol I
Runsl_5094	PWY-6863	pyruvate fermentation to hexanol
Runsl_5094	PWY-6883	pyruvate fermentation to butanol II
Runsl_5094	PWY-6944	androstenedione degradation
Runsl_5094	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Runsl_5094	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Runsl_5094	PWY-7007	methyl ketone biosynthesis
Runsl_5094	PWY-7046	4-coumarate degradation (anaerobic)
Runsl_5094	PWY-7094	fatty acid salvage
Runsl_5094	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Runsl_5094	PWY-735	jasmonic acid biosynthesis
Runsl_5094	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Runsl_5125	PWY-6134	L-tyrosine biosynthesis IV
Runsl_5125	PWY-7158	L-phenylalanine degradation V
Runsl_5163	PWY-5491	diethylphosphate degradation
Runsl_5172	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Runsl_5172	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Runsl_5172	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Runsl_5185	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Runsl_5185	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Runsl_5185	PWY-5989	stearate biosynthesis II (bacteria and plants)
Runsl_5185	PWY-6113	superpathway of mycolate biosynthesis
Runsl_5185	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Runsl_5185	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Runsl_5185	PWY-7096	triclosan resistance
Runsl_5185	PWYG-321	mycolate biosynthesis
Runsl_5233	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_5234	PWY-6807	xyloglucan degradation II (exoglucanase)
Runsl_5239	PWY-5686	UMP biosynthesis
Runsl_5247	PWY-3781	aerobic respiration I (cytochrome c)
Runsl_5247	PWY-4521	arsenite oxidation I (respiratory)
Runsl_5247	PWY-6692	Fe(II) oxidation
Runsl_5247	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Runsl_5257	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Runsl_5260	PWY-5663	tetrahydrobiopterin biosynthesis I
Runsl_5260	PWY-5664	tetrahydrobiopterin biosynthesis II
Runsl_5260	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Runsl_5260	PWY-6703	preQ<sub>0</sub> biosynthesis
Runsl_5260	PWY-6983	tetrahydrobiopterin biosynthesis III
Runsl_5260	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Runsl_5293	PWY-6823	molybdenum cofactor biosynthesis
Runsl_5293	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_5293	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_5293	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Runsl_5295	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Runsl_5295	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Runsl_5296	PWY-2201	folate transformations I
Runsl_5296	PWY-3841	folate transformations II
Runsl_5310	PWY-5344	L-homocysteine biosynthesis
Runsl_5314	PWY-6167	flavin biosynthesis II (archaea)
Runsl_5335	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Runsl_5340	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Runsl_5340	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Runsl_5348	PWY-5663	tetrahydrobiopterin biosynthesis I
Runsl_5348	PWY-5664	tetrahydrobiopterin biosynthesis II
Runsl_5348	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Runsl_5348	PWY-6703	preQ<sub>0</sub> biosynthesis
Runsl_5348	PWY-6983	tetrahydrobiopterin biosynthesis III
Runsl_5348	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Runsl_5350	PWY-6906	chitin derivatives degradation
Runsl_5350	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Runsl_5350	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Runsl_5361	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Runsl_5361	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Runsl_5381	PWY-6823	molybdenum cofactor biosynthesis
Runsl_5381	PWY-6891	thiazole biosynthesis II (Bacillus)
Runsl_5381	PWY-6892	thiazole biosynthesis I (E. coli)
Runsl_5381	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Runsl_5387	PWY-5344	L-homocysteine biosynthesis
Runsl_5387	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Runsl_5400	PWY-5530	sorbitol biosynthesis II
Runsl_5403	PWY-6012	acyl carrier protein metabolism I
Runsl_5412	PWY-2201	folate transformations I
Runsl_5412	PWY-3841	folate transformations II
Runsl_5414	PWY-2941	L-lysine biosynthesis II
Runsl_5414	PWY-5097	L-lysine biosynthesis VI
Runsl_5418	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Runsl_5423	PWY-6614	tetrahydrofolate biosynthesis
Runsl_5426	PWY-7560	methylerythritol phosphate pathway II
Runsl_5441	PWY-5743	3-hydroxypropanoate cycle
Runsl_5441	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_5441	PWY-6728	methylaspartate cycle
Runsl_5441	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_5442	PWY-4841	UDP-&alpha;-D-glucuronate biosynthesis (from <i>myo</i>-inositol)
Runsl_5445	PWY-6123	inosine-5'-phosphate biosynthesis I
Runsl_5445	PWY-7234	inosine-5'-phosphate biosynthesis III
Runsl_5470	PWY-4041	&gamma;-glutamyl cycle
Runsl_5470	PWY-5826	hypoglycin biosynthesis
Runsl_5494	PWY-6123	inosine-5'-phosphate biosynthesis I
Runsl_5494	PWY-6124	inosine-5'-phosphate biosynthesis II
Runsl_5494	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_5494	PWY-7234	inosine-5'-phosphate biosynthesis III
Runsl_5517	PWY-1361	benzoyl-CoA degradation I (aerobic)
Runsl_5517	PWY-5109	2-methylbutanoate biosynthesis
Runsl_5517	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Runsl_5517	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Runsl_5517	PWY-5177	glutaryl-CoA degradation
Runsl_5517	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_5517	PWY-6435	4-hydroxybenzoate biosynthesis V
Runsl_5517	PWY-6583	pyruvate fermentation to butanol I
Runsl_5517	PWY-6863	pyruvate fermentation to hexanol
Runsl_5517	PWY-6883	pyruvate fermentation to butanol II
Runsl_5517	PWY-6944	androstenedione degradation
Runsl_5517	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Runsl_5517	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Runsl_5517	PWY-7007	methyl ketone biosynthesis
Runsl_5517	PWY-7046	4-coumarate degradation (anaerobic)
Runsl_5517	PWY-7094	fatty acid salvage
Runsl_5517	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Runsl_5517	PWY-735	jasmonic acid biosynthesis
Runsl_5517	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Runsl_5523	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_5523	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_5536	PWY-2301	<i>myo</i>-inositol biosynthesis
Runsl_5536	PWY-4702	phytate degradation I
Runsl_5536	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Runsl_5539	PWY-6788	cellulose degradation II (fungi)
Runsl_5549	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_5553	PWY-1042	glycolysis IV (plant cytosol)
Runsl_5553	PWY-5484	glycolysis II (from fructose 6-phosphate)
Runsl_5553	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Runsl_5553	PWY-7003	glycerol degradation to butanol
Runsl_5558	PWY-2941	L-lysine biosynthesis II
Runsl_5558	PWY-2942	L-lysine biosynthesis III
Runsl_5558	PWY-5097	L-lysine biosynthesis VI
Runsl_5560	PWY-2781	<i>cis</i>-zeatin biosynthesis
Runsl_5586	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Runsl_5586	PWY-6596	adenosine nucleotides degradation I
Runsl_5586	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Runsl_5602	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Runsl_5602	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Runsl_5608	PWY-2941	L-lysine biosynthesis II
Runsl_5608	PWY-2942	L-lysine biosynthesis III
Runsl_5608	PWY-5097	L-lysine biosynthesis VI
Runsl_5625	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Runsl_5625	PWY-6416	quinate degradation II
Runsl_5625	PWY-6707	gallate biosynthesis
Runsl_5643	PWY-3841	folate transformations II
Runsl_5643	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Runsl_5643	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Runsl_5643	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Runsl_5643	PWY-7199	pyrimidine deoxyribonucleosides salvage
Runsl_5643	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Runsl_5646	PWY-5743	3-hydroxypropanoate cycle
Runsl_5646	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_5646	PWY-6728	methylaspartate cycle
Runsl_5646	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Runsl_5647	PWY-5743	3-hydroxypropanoate cycle
Runsl_5647	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Runsl_5647	PWY-6728	methylaspartate cycle
Runsl_5647	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)