Shewmr4_0001	SSF48295	TrpR-like
Shewmr4_0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0002	SSF55979	DNA clamp
Shewmr4_0003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0004	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0004	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0004	SSF56719	Type II DNA topoisomerase
Shewmr4_0005	SSF47616	GST C-terminal domain-like
Shewmr4_0005	SSF52833	Thioredoxin-like
Shewmr4_0006	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0006	SSF53850	Periplasmic binding protein-like II
Shewmr4_0007	SSF109604	HD-domain/PDEase-like
Shewmr4_0008	SSF109604	HD-domain/PDEase-like
Shewmr4_0009	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_0010	SSF48150	DNA-glycosylase
Shewmr4_0011	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_0011	SSF51556	Metallo-dependent hydrolases
Shewmr4_0011	SSF82171	DPP6 N-terminal domain-like
Shewmr4_0012	SSF50800	PK beta-barrel domain-like
Shewmr4_0013	SSF64307	SirA-like
Shewmr4_0014	SSF46458	Globin-like
Shewmr4_0014	SSF55073	Nucleotide cyclase
Shewmr4_0015	SSF53098	Ribonuclease H-like
Shewmr4_0016	SSF46689	Homeodomain-like
Shewmr4_0017	SSF53901	Thiolase-like
Shewmr4_0018	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_0018	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0018	SSF52096	ClpP/crotonase
Shewmr4_0019	SSF55920	Creatinase/aminopeptidase
Shewmr4_0020	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0020	SSF54980	EF-G C-terminal domain-like
Shewmr4_0022	SSF52218	Flavoproteins
Shewmr4_0023	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0024	SSF52218	Flavoproteins
Shewmr4_0026	SSF116726	TrkA C-terminal domain-like
Shewmr4_0026	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0027	SSF48013	NusB-like
Shewmr4_0027	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0028	SSF50486	FMT C-terminal domain-like
Shewmr4_0028	SSF53328	Formyltransferase
Shewmr4_0029	SSF56420	Peptide deformylase
Shewmr4_0030	SSF54106	LysM domain
Shewmr4_0031	SSF102405	MCP/YpsA-like
Shewmr4_0033	SSF57783	Zinc beta-ribbon
Shewmr4_0034	SSF55821	YrdC/RibB
Shewmr4_0035	SSF102886	Coproporphyrinogen III oxidase
Shewmr4_0036	SSF46458	Globin-like
Shewmr4_0037	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0037	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_0038	SSF160272	Shew3726-like
Shewmr4_0039	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_0041	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0042	SSF88713	Glycoside hydrolase/deacetylase
Shewmr4_0043	SSF50156	PDZ domain-like
Shewmr4_0043	SSF52096	ClpP/crotonase
Shewmr4_0045	SSF53649	Alkaline phosphatase-like
Shewmr4_0045	SSF64158	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Shewmr4_0046	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_0047	SSF54611	SecB-like
Shewmr4_0048	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_0048	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0049	SSF160996	HI0933 insert domain-like
Shewmr4_0049	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0052	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0053	SSF52172	CheY-like
Shewmr4_0054	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0054	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0055	SSF51182	RmlC-like cupins
Shewmr4_0056	SSF55781	GAF domain-like
Shewmr4_0056	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0057	SSF52172	CheY-like
Shewmr4_0058	SSF103473	MFS general substrate transporter
Shewmr4_0061	SSF54001	Cysteine proteinases
Shewmr4_0062	SSF103473	MFS general substrate transporter
Shewmr4_0063	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_0063	SSF53822	Periplasmic binding protein-like I
Shewmr4_0064	SSF51445	(Trans)glycosidases
Shewmr4_0065	SSF103473	MFS general substrate transporter
Shewmr4_0066	SSF56935	Porins
Shewmr4_0067	SSF53613	Ribokinase-like
Shewmr4_0068	SSF53218	Molybdenum cofactor biosynthesis proteins
Shewmr4_0070	SSF46689	Homeodomain-like
Shewmr4_0070	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_0073	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0074	SSF53474	alpha/beta-Hydrolases
Shewmr4_0075	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0076	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0078	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_0079	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Shewmr4_0080	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0083	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0084	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0085	SSF46955	Putative DNA-binding domain
Shewmr4_0086	SSF52218	Flavoproteins
Shewmr4_0087	SSF51316	Mss4-like
Shewmr4_0088	SSF46955	Putative DNA-binding domain
Shewmr4_0089	SSF69118	AhpD-like
Shewmr4_0090	SSF56784	HAD-like
Shewmr4_0095	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0096	SSF63380	Riboflavin synthase domain-like
Shewmr4_0097	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_0097	SSF51556	Metallo-dependent hydrolases
Shewmr4_0098	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0098	SSF64288	Chorismate lyase-like
Shewmr4_0099	SSF111326	Urocanase
Shewmr4_0100	SSF48557	L-aspartase-like
Shewmr4_0101	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_0102	SSF50692	ADC-like
Shewmr4_0102	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_0103	SSF54862	4Fe-4S ferredoxins
Shewmr4_0104	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_0105	SSF144020	FdhE-like
Shewmr4_0106	SSF53383	PLP-dependent transferases
Shewmr4_0107	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0107	SSF50447	Translation proteins
Shewmr4_0107	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Shewmr4_0107	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0108	SSF53927	Cytidine deaminase-like
Shewmr4_0110	SSF64307	SirA-like
Shewmr4_0111	SSF54523	Pili subunits
Shewmr4_0117	SSF50182	Sm-like ribonucleoproteins
Shewmr4_0118	SSF103473	MFS general substrate transporter
Shewmr4_0119	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_0120	SSF54427	NTF2-like
Shewmr4_0124	SSF56935	Porins
Shewmr4_0125	SSF49299	PKD domain
Shewmr4_0125	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_0126	SSF64288	Chorismate lyase-like
Shewmr4_0128	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0131	SSF69572	Activating enzymes of the ubiquitin-like proteins
Shewmr4_0132	SSF53218	Molybdenum cofactor biosynthesis proteins
Shewmr4_0132	SSF63867	MoeA C-terminal domain-like
Shewmr4_0132	SSF63882	MoeA N-terminal region -like
Shewmr4_0133	SSF47240	Ferritin-like
Shewmr4_0134	SSF141868	EAL domain-like
Shewmr4_0134	SSF55073	Nucleotide cyclase
Shewmr4_0134	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0135	SSF55821	YrdC/RibB
Shewmr4_0136	SSF50993	Peptidase/esterase 'gauge' domain
Shewmr4_0136	SSF53474	alpha/beta-Hydrolases
Shewmr4_0137	SSF82771	GIY-YIG endonuclease
Shewmr4_0139	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0139	SSF53850	Periplasmic binding protein-like II
Shewmr4_0140	SSF52218	Flavoproteins
Shewmr4_0141	SSF53927	Cytidine deaminase-like
Shewmr4_0144	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0145	SSF53187	Zn-dependent exopeptidases
Shewmr4_0147	SSF118215	Proton glutamate symport protein
Shewmr4_0150	SSF103088	OmpA-like
Shewmr4_0152	SSF53795	PEP carboxykinase-like
Shewmr4_0152	SSF68923	PEP carboxykinase N-terminal domain
Shewmr4_0153	SSF118352	HSP33 redox switch-like
Shewmr4_0153	SSF64397	Hsp33 domain
Shewmr4_0154	SSF55174	Alpha-L RNA-binding motif
Shewmr4_0155	SSF50156	PDZ domain-like
Shewmr4_0157	SSF160246	EspE N-terminal domain-like
Shewmr4_0157	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0159	SSF54523	Pili subunits
Shewmr4_0161	SSF54523	Pili subunits
Shewmr4_0162	SSF54523	Pili subunits
Shewmr4_0163	SSF158544	GspK insert domain-like
Shewmr4_0163	SSF54523	Pili subunits
Shewmr4_0164	SSF53067	Actin-like ATPase domain
Shewmr4_0165	SSF103054	General secretion pathway protein M, EpsM
Shewmr4_0167	SSF56784	HAD-like
Shewmr4_0168	SSF56925	OMPA-like
Shewmr4_0169	SSF55811	Nudix
Shewmr4_0170	SSF56655	Carbohydrate phosphatase
Shewmr4_0171	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0172	SSF46689	Homeodomain-like
Shewmr4_0172	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_0173	SSF103473	MFS general substrate transporter
Shewmr4_0173	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_0174	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_0175	SSF55326	PurM N-terminal domain-like
Shewmr4_0175	SSF56042	PurM C-terminal domain-like
Shewmr4_0177	SSF46689	Homeodomain-like
Shewmr4_0178	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0179	SSF53681	Aspartate/glutamate racemase
Shewmr4_0180	SSF54928	RNA-binding domain, RBD
Shewmr4_0181	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_0181	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Shewmr4_0182	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0182	SSF50037	C-terminal domain of transcriptional repressors
Shewmr4_0182	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_0183	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0185	SSF50447	Translation proteins
Shewmr4_0185	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Shewmr4_0185	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0187	SSF50104	Translation proteins SH3-like domain
Shewmr4_0187	SSF82679	N-utilization substance G protein NusG, N-terminal domain
Shewmr4_0188	SSF46906	Ribosomal protein L11, C-terminal domain
Shewmr4_0188	SSF54747	Ribosomal L11/L12e N-terminal domain
Shewmr4_0189	SSF56808	Ribosomal protein L1
Shewmr4_0190	SSF160369	Ribosomal protein L10-like
Shewmr4_0191	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Shewmr4_0191	SSF54736	ClpS-like
Shewmr4_0192	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Shewmr4_0193	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
Shewmr4_0194	SSF50249	Nucleic acid-binding proteins
Shewmr4_0195	SSF47973	Ribosomal protein S7
Shewmr4_0196	SSF50447	Translation proteins
Shewmr4_0196	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0196	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0196	SSF54980	EF-G C-terminal domain-like
Shewmr4_0197	SSF50447	Translation proteins
Shewmr4_0197	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Shewmr4_0197	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0198	SSF54999	Ribosomal protein S10
Shewmr4_0199	SSF50447	Translation proteins
Shewmr4_0200	SSF52166	Ribosomal protein L4
Shewmr4_0201	SSF54189	Ribosomal proteins S24e, L23 and L15e
Shewmr4_0202	SSF50104	Translation proteins SH3-like domain
Shewmr4_0202	SSF50249	Nucleic acid-binding proteins
Shewmr4_0203	SSF54570	Ribosomal protein S19
Shewmr4_0204	SSF54843	Ribosomal protein L22
Shewmr4_0205	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Shewmr4_0205	SSF54821	Ribosomal protein S3 C-terminal domain
Shewmr4_0206	SSF54686	Ribosomal protein L16p/L10e
Shewmr4_0207	SSF46561	Ribosomal protein L29 (L29p)
Shewmr4_0208	SSF50249	Nucleic acid-binding proteins
Shewmr4_0209	SSF50193	Ribosomal protein L14
Shewmr4_0210	SSF50104	Translation proteins SH3-like domain
Shewmr4_0211	SSF55282	RL5-like
Shewmr4_0212	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_0213	SSF56047	Ribosomal protein S8
Shewmr4_0214	SSF56053	Ribosomal protein L6
Shewmr4_0215	SSF53137	Translational machinery components
Shewmr4_0216	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0216	SSF54768	dsRNA-binding domain-like
Shewmr4_0217	SSF55129	Ribosomal protein L30p/L7e
Shewmr4_0218	SSF52080	Ribosomal proteins L15p and L18e
Shewmr4_0219	SSF103491	Preprotein translocase SecY subunit
Shewmr4_0220	SSF57840	Ribosomal protein L36
Shewmr4_0221	SSF46946	S13-like H2TH domain
Shewmr4_0222	SSF53137	Translational machinery components
Shewmr4_0223	SSF55174	Alpha-L RNA-binding motif
Shewmr4_0224	SSF47789	C-terminal domain of RNA polymerase alpha subunit
Shewmr4_0224	SSF55257	RBP11-like subunits of RNA polymerase
Shewmr4_0224	SSF56553	Insert subdomain of RNA polymerase alpha subunit
Shewmr4_0225	SSF64263	Prokaryotic ribosomal protein L17
Shewmr4_0227	SSF82093	Heme chaperone CcmE
Shewmr4_0231	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0232	SSF46626	Cytochrome c
Shewmr4_0233	SSF48452	TPR-like
Shewmr4_0235	SSF52833	Thioredoxin-like
Shewmr4_0237	SSF52833	Thioredoxin-like
Shewmr4_0238	SSF109854	DinB/YfiT-like putative metalloenzymes
Shewmr4_0239	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0239	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0240	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0240	SSF52172	CheY-like
Shewmr4_0243	SSF46626	Cytochrome c
Shewmr4_0244	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_0247	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0247	SSF53850	Periplasmic binding protein-like II
Shewmr4_0248	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0249	SSF53720	ALDH-like
Shewmr4_0250	SSF46689	Homeodomain-like
Shewmr4_0250	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0250	SSF55781	GAF domain-like
Shewmr4_0251	SSF158472	HAMP domain-like
Shewmr4_0251	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0251	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0252	SSF52172	CheY-like
Shewmr4_0254	SSF160240	Cation efflux protein cytoplasmic domain-like
Shewmr4_0254	SSF161111	Cation efflux protein transmembrane domain-like
Shewmr4_0256	SSF56925	OMPA-like
Shewmr4_0257	SSF46689	Homeodomain-like
Shewmr4_0257	SSF52172	CheY-like
Shewmr4_0257	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0258	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0258	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0258	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0260	SSF56796	Dehydroquinate synthase-like
Shewmr4_0261	SSF46689	Homeodomain-like
Shewmr4_0261	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_0262	SSF51182	RmlC-like cupins
Shewmr4_0264	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0264	SSF56436	C-type lectin-like
Shewmr4_0267	SSF53613	Ribokinase-like
Shewmr4_0268	SSF55073	Nucleotide cyclase
Shewmr4_0269	SSF50800	PK beta-barrel domain-like
Shewmr4_0271	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0272	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0272	SSF54373	FAD-linked reductases, C-terminal domain
Shewmr4_0272	SSF54862	4Fe-4S ferredoxins
Shewmr4_0273	SSF102114	Radical SAM enzymes
Shewmr4_0274	SSF55040	Molybdenum cofactor biosynthesis protein C, MoaC
Shewmr4_0275	SSF54285	MoaD/ThiS
Shewmr4_0276	SSF54690	Molybdopterin synthase subunit MoaE
Shewmr4_0277	SSF53850	Periplasmic binding protein-like II
Shewmr4_0278	SSF161098	MetI-like
Shewmr4_0279	SSF50331	MOP-like
Shewmr4_0279	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0281	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0281	SSF52172	CheY-like
Shewmr4_0282	SSF158472	HAMP domain-like
Shewmr4_0282	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0282	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0283	SSF55120	Pseudouridine synthase
Shewmr4_0284	SSF55073	Nucleotide cyclase
Shewmr4_0286	SSF56935	Porins
Shewmr4_0288	SSF51261	Duplicated hybrid motif
Shewmr4_0290	SSF54001	Cysteine proteinases
Shewmr4_0291	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_0292	SSF46689	Homeodomain-like
Shewmr4_0292	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_0294	SSF140959	Indolic compounds 2,3-dioxygenase-like
Shewmr4_0295	SSF53383	PLP-dependent transferases
Shewmr4_0297	SSF118215	Proton glutamate symport protein
Shewmr4_0298	SSF46689	Homeodomain-like
Shewmr4_0299	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0299	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_0300	SSF48695	Multiheme cytochromes
Shewmr4_0301	SSF56935	Porins
Shewmr4_0302	SSF56935	Porins
Shewmr4_0303	SSF51182	RmlC-like cupins
Shewmr4_0304	SSF56935	Porins
Shewmr4_0305	SSF54368	Glutamine synthetase, N-terminal domain
Shewmr4_0305	SSF55931	Glutamine synthetase/guanido kinase
Shewmr4_0306	SSF50447	Translation proteins
Shewmr4_0306	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0306	SSF54980	EF-G C-terminal domain-like
Shewmr4_0307	SSF46689	Homeodomain-like
Shewmr4_0308	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0309	SSF51182	RmlC-like cupins
Shewmr4_0310	SSF50129	GroES-like
Shewmr4_0310	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0311	SSF48113	Heme-dependent peroxidases
Shewmr4_0312	SSF54862	4Fe-4S ferredoxins
Shewmr4_0313	SSF55073	Nucleotide cyclase
Shewmr4_0314	SSF111474	Coronavirus S2 glycoprotein
Shewmr4_0317	SSF53474	alpha/beta-Hydrolases
Shewmr4_0319	SSF69500	DTD-like
Shewmr4_0320	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0321	SSF52218	Flavoproteins
Shewmr4_0323	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_0324	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_0324	SSF51182	RmlC-like cupins
Shewmr4_0326	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0327	SSF52833	Thioredoxin-like
Shewmr4_0328	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0333	SSF143120	YefM-like
Shewmr4_0335	SSF53901	Thiolase-like
Shewmr4_0336	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0337	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0338	SSF53901	Thiolase-like
Shewmr4_0340	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0341	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_0342	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Shewmr4_0343	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0344	SSF48557	L-aspartase-like
Shewmr4_0345	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_0346	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0347	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_0349	SSF47336	ACP-like
Shewmr4_0350	SSF47336	ACP-like
Shewmr4_0351	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_0354	SSF50249	Nucleic acid-binding proteins
Shewmr4_0354	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0355	SSF53822	Periplasmic binding protein-like I
Shewmr4_0356	SSF55073	Nucleotide cyclase
Shewmr4_0356	SSF55781	GAF domain-like
Shewmr4_0358	SSF53850	Periplasmic binding protein-like II
Shewmr4_0359	SSF54631	CBS-domain pair
Shewmr4_0359	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_0360	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0360	SSF53850	Periplasmic binding protein-like II
Shewmr4_0361	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_0361	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0362	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_0362	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_0363	SSF55021	ACT-like
Shewmr4_0364	SSF143975	IlvD/EDD N-terminal domain-like
Shewmr4_0364	SSF52016	LeuD/IlvD-like
Shewmr4_0365	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_0365	SSF55021	ACT-like
Shewmr4_0366	SSF53383	PLP-dependent transferases
Shewmr4_0369	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Shewmr4_0376	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0377	SSF141868	EAL domain-like
Shewmr4_0377	SSF55073	Nucleotide cyclase
Shewmr4_0377	SSF55781	GAF domain-like
Shewmr4_0378	SSF141868	EAL domain-like
Shewmr4_0378	SSF158472	HAMP domain-like
Shewmr4_0378	SSF55073	Nucleotide cyclase
Shewmr4_0380	SSF103088	OmpA-like
Shewmr4_0381	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_0382	SSF111369	HlyD-like secretion proteins
Shewmr4_0383	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0383	SSF90123	ABC transporter transmembrane region
Shewmr4_0384	SSF51120	beta-Roll
Shewmr4_0385	SSF48452	TPR-like
Shewmr4_0387	SSF69618	HemD-like
Shewmr4_0388	SSF53850	Periplasmic binding protein-like II
Shewmr4_0388	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Shewmr4_0390	SSF55387	Frataxin/Nqo15-like
Shewmr4_0391	SSF50621	Alanine racemase C-terminal domain-like
Shewmr4_0391	SSF51419	PLP-binding barrel
Shewmr4_0392	SSF54506	Diaminopimelate epimerase-like
Shewmr4_0394	SSF47823	lambda integrase-like, N-terminal domain
Shewmr4_0394	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_0395	SSF56784	HAD-like
Shewmr4_0399	SSF46689	Homeodomain-like
Shewmr4_0400	SSF51395	FMN-linked oxidoreductases
Shewmr4_0401	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0402	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Shewmr4_0403	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Shewmr4_0404	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Shewmr4_0404	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0404	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_0405	SSF46548	alpha-helical ferredoxin
Shewmr4_0405	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_0406	SSF54909	Dimeric alpha+beta barrel
Shewmr4_0407	SSF50129	GroES-like
Shewmr4_0407	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0408	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0408	SSF53850	Periplasmic binding protein-like II
Shewmr4_0409	SSF50249	Nucleic acid-binding proteins
Shewmr4_0409	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0409	SSF68912	Rho N-terminal domain-like
Shewmr4_0410	SSF52833	Thioredoxin-like
Shewmr4_0411	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0412	SSF53067	Actin-like ATPase domain
Shewmr4_0413	SSF52833	Thioredoxin-like
Shewmr4_0414	SSF55811	Nudix
Shewmr4_0415	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_0416	SSF160950	YacF-like
Shewmr4_0417	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0420	SSF160246	EspE N-terminal domain-like
Shewmr4_0420	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0422	SSF54523	Pili subunits
Shewmr4_0424	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
Shewmr4_0424	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
Shewmr4_0425	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
Shewmr4_0427	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0427	SSF48008	GntR ligand-binding domain-like
Shewmr4_0428	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_0428	SSF52922	TK C-terminal domain-like
Shewmr4_0429	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Shewmr4_0429	SSF51230	Single hybrid motif
Shewmr4_0429	SSF52777	CoA-dependent acyltransferases
Shewmr4_0430	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0430	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Shewmr4_0431	SSF101898	NHL repeat
Shewmr4_0431	SSF141868	EAL domain-like
Shewmr4_0431	SSF55073	Nucleotide cyclase
Shewmr4_0431	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0432	SSF52151	FabD/lysophospholipase-like
Shewmr4_0433	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_0434	SSF53098	Ribonuclease H-like
Shewmr4_0435	SSF46689	Homeodomain-like
Shewmr4_0436	SSF56784	HAD-like
Shewmr4_0437	SSF52016	LeuD/IlvD-like
Shewmr4_0437	SSF53732	Aconitase iron-sulfur domain
Shewmr4_0437	SSF74778	Aconitase B, N-terminal domain
Shewmr4_0439	SSF51726	UROD/MetE-like
Shewmr4_0440	SSF141868	EAL domain-like
Shewmr4_0440	SSF55073	Nucleotide cyclase
Shewmr4_0440	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0441	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0444	SSF51246	Rudiment single hybrid motif
Shewmr4_0444	SSF52440	PreATP-grasp domain
Shewmr4_0444	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_0445	SSF52335	Methylglyoxal synthase-like
Shewmr4_0445	SSF53927	Cytidine deaminase-like
Shewmr4_0446	SSF46955	Putative DNA-binding domain
Shewmr4_0448	SSF117892	Band 7/SPFH domain
Shewmr4_0452	SSF103473	MFS general substrate transporter
Shewmr4_0453	SSF55073	Nucleotide cyclase
Shewmr4_0453	SSF55781	GAF domain-like
Shewmr4_0456	SSF52833	Thioredoxin-like
Shewmr4_0457	SSF54534	FKBP-like
Shewmr4_0458	SSF55073	Nucleotide cyclase
Shewmr4_0458	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0461	SSF53850	Periplasmic binding protein-like II
Shewmr4_0463	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0467	SSF55811	Nudix
Shewmr4_0468	SSF103642	Sec-C motif
Shewmr4_0470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0471	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0473	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0476	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Shewmr4_0478	SSF52833	Thioredoxin-like
Shewmr4_0481	SSF109604	HD-domain/PDEase-like
Shewmr4_0481	SSF52172	CheY-like
Shewmr4_0482	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_0482	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0482	SSF52172	CheY-like
Shewmr4_0482	SSF53822	Periplasmic binding protein-like I
Shewmr4_0482	SSF53850	Periplasmic binding protein-like II
Shewmr4_0482	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0482	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0483	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0483	SSF52172	CheY-like
Shewmr4_0483	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0485	SSF52833	Thioredoxin-like
Shewmr4_0488	SSF48695	Multiheme cytochromes
Shewmr4_0489	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_0490	SSF54534	FKBP-like
Shewmr4_0491	SSF48452	TPR-like
Shewmr4_0492	SSF54862	4Fe-4S ferredoxins
Shewmr4_0494	SSF160387	NosL/MerB-like
Shewmr4_0495	SSF51126	Pectin lyase-like
Shewmr4_0496	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0498	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0499	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_0501	SSF52025	PA domain
Shewmr4_0501	SSF52743	Subtilisin-like
Shewmr4_0502	SSF50475	FMN-binding split barrel
Shewmr4_0503	SSF48403	Ankyrin repeat
Shewmr4_0505	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_0505	SSF63380	Riboflavin synthase domain-like
Shewmr4_0506	SSF143968	UbiD C-terminal domain-like
Shewmr4_0506	SSF50475	FMN-binding split barrel
Shewmr4_0508	SSF103473	MFS general substrate transporter
Shewmr4_0509	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0510	SSF51230	Single hybrid motif
Shewmr4_0511	SSF52304	Type II 3-dehydroquinate dehydratase
Shewmr4_0512	SSF75620	Release factor
Shewmr4_0513	SSF52091	SpoIIaa-like
Shewmr4_0516	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_0517	SSF111369	HlyD-like secretion proteins
Shewmr4_0518	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_0518	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_0518	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_0520	SSF54909	Dimeric alpha+beta barrel
Shewmr4_0521	SSF81330	Gated mechanosensitive channel
Shewmr4_0522	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0522	SSF53850	Periplasmic binding protein-like II
Shewmr4_0523	SSF111369	HlyD-like secretion proteins
Shewmr4_0524	SSF103473	MFS general substrate transporter
Shewmr4_0525	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0526	SSF54909	Dimeric alpha+beta barrel
Shewmr4_0527	SSF46689	Homeodomain-like
Shewmr4_0527	SSF52172	CheY-like
Shewmr4_0527	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0529	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_0530	SSF102114	Radical SAM enzymes
Shewmr4_0531	SSF56935	Porins
Shewmr4_0532	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0535	SSF52833	Thioredoxin-like
Shewmr4_0536	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0536	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_0537	SSF103473	MFS general substrate transporter
Shewmr4_0539	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_0541	SSF103190	Sensory domain-like
Shewmr4_0543	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0543	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0543	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0544	SSF52172	CheY-like
Shewmr4_0545	SSF141868	EAL domain-like
Shewmr4_0545	SSF52172	CheY-like
Shewmr4_0545	SSF55073	Nucleotide cyclase
Shewmr4_0546	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_0547	SSF56935	Porins
Shewmr4_0548	SSF47729	IHF-like DNA-binding proteins
Shewmr4_0549	SSF52172	CheY-like
Shewmr4_0555	SSF141868	EAL domain-like
Shewmr4_0555	SSF54631	CBS-domain pair
Shewmr4_0555	SSF55073	Nucleotide cyclase
Shewmr4_0558	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0559	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_0560	SSF51430	NAD(P)-linked oxidoreductase
Shewmr4_0561	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0562	SSF50182	Sm-like ribonucleoproteins
Shewmr4_0562	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Shewmr4_0562	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Shewmr4_0566	SSF56935	Porins
Shewmr4_0567	SSF53807	"Helical backbone" metal receptor
Shewmr4_0568	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Shewmr4_0569	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_0570	SSF89946	Hypothetical protein VC0424
Shewmr4_0571	SSF55073	Nucleotide cyclase
Shewmr4_0571	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0572	SSF103039	CheC-like
Shewmr4_0572	SSF52172	CheY-like
Shewmr4_0573	SSF52096	ClpP/crotonase
Shewmr4_0575	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0576	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0576	SSF88723	PIN domain-like
Shewmr4_0577	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0577	SSF52172	CheY-like
Shewmr4_0577	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0577	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0578	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_0579	SSF56112	Protein kinase-like (PK-like)
Shewmr4_0581	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0583	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0583	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0584	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0584	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_0586	SSF51695	PLC-like phosphodiesterases
Shewmr4_0587	SSF50182	Sm-like ribonucleoproteins
Shewmr4_0587	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Shewmr4_0587	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Shewmr4_0588	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_0590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0591	SSF53098	Ribonuclease H-like
Shewmr4_0593	SSF53613	Ribokinase-like
Shewmr4_0593	SSF64153	YjeF N-terminal domain-like
Shewmr4_0594	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0595	SSF53187	Zn-dependent exopeptidases
Shewmr4_0595	SSF54106	LysM domain
Shewmr4_0596	SSF118116	DNA mismatch repair protein MutL
Shewmr4_0596	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0596	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0598	SSF50182	Sm-like ribonucleoproteins
Shewmr4_0599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0599	SSF54980	EF-G C-terminal domain-like
Shewmr4_0600	SSF117892	Band 7/SPFH domain
Shewmr4_0601	SSF117892	Band 7/SPFH domain
Shewmr4_0602	SSF50022	ISP domain
Shewmr4_0603	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_0603	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Shewmr4_0604	SSF46626	Cytochrome c
Shewmr4_0605	SSF47616	GST C-terminal domain-like
Shewmr4_0605	SSF52833	Thioredoxin-like
Shewmr4_0606	SSF101738	SspB-like
Shewmr4_0607	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_0608	SSF53474	alpha/beta-Hydrolases
Shewmr4_0608	SSF82171	DPP6 N-terminal domain-like
Shewmr4_0609	SSF109604	HD-domain/PDEase-like
Shewmr4_0610	SSF53474	alpha/beta-Hydrolases
Shewmr4_0611	SSF53383	PLP-dependent transferases
Shewmr4_0612	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0613	SSF53720	ALDH-like
Shewmr4_0615	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0615	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0616	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0616	SSF52172	CheY-like
Shewmr4_0618	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0618	SSF51206	cAMP-binding domain-like
Shewmr4_0619	SSF81901	HCP-like
Shewmr4_0620	SSF55144	LigT-like
Shewmr4_0621	SSF141868	EAL domain-like
Shewmr4_0621	SSF55073	Nucleotide cyclase
Shewmr4_0621	SSF55781	GAF domain-like
Shewmr4_0622	SSF56935	Porins
Shewmr4_0623	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0624	SSF53955	Lysozyme-like
Shewmr4_0624	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0625	SSF54534	FKBP-like
Shewmr4_0627	SSF82784	OsmC-like
Shewmr4_0630	SSF56935	Porins
Shewmr4_0632	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0632	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0633	SSF50692	ADC-like
Shewmr4_0633	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_0635	SSF54862	4Fe-4S ferredoxins
Shewmr4_0636	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0636	SSF53850	Periplasmic binding protein-like II
Shewmr4_0636	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0637	SSF52172	CheY-like
Shewmr4_0641	SSF56726	DNA topoisomerase IV, alpha subunit
Shewmr4_0642	SSF118215	Proton glutamate symport protein
Shewmr4_0643	SSF53098	Ribonuclease H-like
Shewmr4_0644	SSF46689	Homeodomain-like
Shewmr4_0649	SSF56655	Carbohydrate phosphatase
Shewmr4_0650	SSF53474	alpha/beta-Hydrolases
Shewmr4_0650	SSF82171	DPP6 N-terminal domain-like
Shewmr4_0651	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0651	SSF52172	CheY-like
Shewmr4_0653	SSF53633	Carbamate kinase-like
Shewmr4_0653	SSF55021	ACT-like
Shewmr4_0654	SSF53187	Zn-dependent exopeptidases
Shewmr4_0655	SSF143865	CorA soluble domain-like
Shewmr4_0655	SSF144083	Magnesium transport protein CorA, transmembrane region
Shewmr4_0657	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0657	SSF52172	CheY-like
Shewmr4_0658	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0659	SSF48695	Multiheme cytochromes
Shewmr4_0660	SSF141868	EAL domain-like
Shewmr4_0660	SSF55073	Nucleotide cyclase
Shewmr4_0660	SSF55781	GAF domain-like
Shewmr4_0661	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Shewmr4_0664	SSF56112	Protein kinase-like (PK-like)
Shewmr4_0665	SSF46689	Homeodomain-like
Shewmr4_0666	SSF103088	OmpA-like
Shewmr4_0667	SSF53850	Periplasmic binding protein-like II
Shewmr4_0668	SSF158791	MgtE N-terminal domain-like
Shewmr4_0668	SSF161093	MgtE membrane domain-like
Shewmr4_0668	SSF54631	CBS-domain pair
Shewmr4_0669	SSF55594	HPr-like
Shewmr4_0670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0671	SSF55804	Phoshotransferase/anion transport protein
Shewmr4_0672	SSF69754	Ribosome binding protein Y (YfiA homologue)
Shewmr4_0674	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0677	SSF56784	HAD-like
Shewmr4_0678	SSF53697	SIS domain
Shewmr4_0679	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0683	SSF52091	SpoIIaa-like
Shewmr4_0684	SSF82657	BolA-like
Shewmr4_0685	SSF55205	EPT/RTPC-like
Shewmr4_0687	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0688	SSF53649	Alkaline phosphatase-like
Shewmr4_0689	SSF52440	PreATP-grasp domain
Shewmr4_0689	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_0690	SSF75217	alpha/beta knot
Shewmr4_0690	SSF88697	PUA domain-like
Shewmr4_0691	SSF54060	His-Me finger endonucleases
Shewmr4_0693	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Shewmr4_0694	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0695	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0695	SSF53850	Periplasmic binding protein-like II
Shewmr4_0696	SSF51230	Single hybrid motif
Shewmr4_0696	SSF51246	Rudiment single hybrid motif
Shewmr4_0696	SSF52096	ClpP/crotonase
Shewmr4_0696	SSF52440	PreATP-grasp domain
Shewmr4_0696	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_0697	SSF53850	Periplasmic binding protein-like II
Shewmr4_0697	SSF55073	Nucleotide cyclase
Shewmr4_0698	SSF50447	Translation proteins
Shewmr4_0698	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0698	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_0698	SSF54980	EF-G C-terminal domain-like
Shewmr4_0699	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0699	SSF53850	Periplasmic binding protein-like II
Shewmr4_0701	SSF48695	Multiheme cytochromes
Shewmr4_0702	SSF54862	4Fe-4S ferredoxins
Shewmr4_0703	SSF54862	4Fe-4S ferredoxins
Shewmr4_0704	SSF50692	ADC-like
Shewmr4_0704	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_0709	SSF54523	Pili subunits
Shewmr4_0710	SSF54523	Pili subunits
Shewmr4_0711	SSF159245	AttH-like
Shewmr4_0713	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0715	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_0715	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0715	SSF52172	CheY-like
Shewmr4_0715	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0715	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0716	SSF109604	HD-domain/PDEase-like
Shewmr4_0716	SSF52172	CheY-like
Shewmr4_0717	SSF101790	Aminomethyltransferase beta-barrel domain
Shewmr4_0717	SSF103025	Folate-binding domain
Shewmr4_0718	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0718	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_0718	SSF55021	ACT-like
Shewmr4_0720	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0723	SSF49299	PKD domain
Shewmr4_0723	SSF49785	Galactose-binding domain-like
Shewmr4_0723	SSF52743	Subtilisin-like
Shewmr4_0725	SSF52374	Nucleotidylyl transferase
Shewmr4_0726	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_0727	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Shewmr4_0728	SSF81301	Nucleotidyltransferase
Shewmr4_0728	SSF81891	Poly A polymerase C-terminal region-like
Shewmr4_0729	SSF52374	Nucleotidylyl transferase
Shewmr4_0730	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
Shewmr4_0730	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_0732	SSF53187	Zn-dependent exopeptidases
Shewmr4_0733	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0734	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0735	SSF118001	YehU-like
Shewmr4_0736	SSF53474	alpha/beta-Hydrolases
Shewmr4_0738	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0739	SSF51316	Mss4-like
Shewmr4_0741	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0742	SSF57783	Zinc beta-ribbon
Shewmr4_0744	SSF51182	RmlC-like cupins
Shewmr4_0745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0746	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_0747	SSF51430	NAD(P)-linked oxidoreductase
Shewmr4_0753	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_0753	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_0753	SSF63380	Riboflavin synthase domain-like
Shewmr4_0756	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0757	SSF48403	Ankyrin repeat
Shewmr4_0758	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0758	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0759	SSF52972	ITPase-like
Shewmr4_0760	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_0762	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0764	SSF118215	Proton glutamate symport protein
Shewmr4_0767	SSF55073	Nucleotide cyclase
Shewmr4_0768	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0769	SSF141868	EAL domain-like
Shewmr4_0772	SSF55973	S-adenosylmethionine synthetase
Shewmr4_0773	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_0773	SSF52922	TK C-terminal domain-like
Shewmr4_0774	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0774	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_0775	SSF53748	Phosphoglycerate kinase
Shewmr4_0776	SSF51569	Aldolase
Shewmr4_0779	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0782	SSF48695	Multiheme cytochromes
Shewmr4_0783	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_0786	SSF103190	Sensory domain-like
Shewmr4_0786	SSF55073	Nucleotide cyclase
Shewmr4_0786	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0787	SSF102114	Radical SAM enzymes
Shewmr4_0788	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_0788	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_0788	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_0789	SSF111369	HlyD-like secretion proteins
Shewmr4_0790	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0791	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_0791	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0791	SSF52172	CheY-like
Shewmr4_0791	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0791	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0792	SSF109604	HD-domain/PDEase-like
Shewmr4_0792	SSF52172	CheY-like
Shewmr4_0793	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0795	SSF47823	lambda integrase-like, N-terminal domain
Shewmr4_0795	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_0796	SSF52833	Thioredoxin-like
Shewmr4_0796	SSF54423	DsbC/DsbG N-terminal domain-like
Shewmr4_0797	SSF64182	DHH phosphoesterases
Shewmr4_0799	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0800	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0800	SSF52833	Thioredoxin-like
Shewmr4_0801	SSF52833	Thioredoxin-like
Shewmr4_0802	SSF52949	Macro domain-like
Shewmr4_0802	SSF53187	Zn-dependent exopeptidases
Shewmr4_0803	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0804	SSF50182	Sm-like ribonucleoproteins
Shewmr4_0806	SSF53474	alpha/beta-Hydrolases
Shewmr4_0807	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0807	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_0808	SSF48695	Multiheme cytochromes
Shewmr4_0808	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0808	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_0810	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0813	SSF52833	Thioredoxin-like
Shewmr4_0814	SSF82784	OsmC-like
Shewmr4_0815	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_0816	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0817	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0818	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0818	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0819	SSF52172	CheY-like
Shewmr4_0822	SSF52743	Subtilisin-like
Shewmr4_0824	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0825	SSF46548	alpha-helical ferredoxin
Shewmr4_0825	SSF50692	ADC-like
Shewmr4_0825	SSF51971	Nucleotide-binding domain
Shewmr4_0825	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_0825	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_0825	SSF54862	4Fe-4S ferredoxins
Shewmr4_0826	SSF75620	Release factor
Shewmr4_0827	SSF50249	Nucleic acid-binding proteins
Shewmr4_0827	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_0828	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0829	SSF144091	Rhomboid-like
Shewmr4_0830	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Shewmr4_0831	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Shewmr4_0833	SSF53474	alpha/beta-Hydrolases
Shewmr4_0837	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0838	SSF47644	Methionine synthase domain
Shewmr4_0838	SSF51717	Dihydropteroate synthetase-like
Shewmr4_0838	SSF52242	Cobalamin (vitamin B12)-binding domain
Shewmr4_0838	SSF56507	Methionine synthase activation domain-like
Shewmr4_0838	SSF82282	Homocysteine S-methyltransferase
Shewmr4_0839	SSF53254	Phosphoglycerate mutase-like
Shewmr4_0840	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0841	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
Shewmr4_0842	SSF52733	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Shewmr4_0844	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0845	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_0845	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0846	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0848	SSF53807	"Helical backbone" metal receptor
Shewmr4_0849	SSF161084	MAPEG domain-like
Shewmr4_0852	SSF54523	Pili subunits
Shewmr4_0853	SSF54523	Pili subunits
Shewmr4_0858	SSF54427	NTF2-like
Shewmr4_0860	SSF51556	Metallo-dependent hydrolases
Shewmr4_0863	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0866	SSF46689	Homeodomain-like
Shewmr4_0866	SSF52172	CheY-like
Shewmr4_0866	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0867	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_0867	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_0871	SSF46689	Homeodomain-like
Shewmr4_0872	SSF53720	ALDH-like
Shewmr4_0873	SSF52091	SpoIIaa-like
Shewmr4_0874	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_0875	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_0876	SSF53850	Periplasmic binding protein-like II
Shewmr4_0877	SSF48452	TPR-like
Shewmr4_0879	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_0882	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0882	SSF90123	ABC transporter transmembrane region
Shewmr4_0883	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_0884	SSF55920	Creatinase/aminopeptidase
Shewmr4_0886	SSF54862	4Fe-4S ferredoxins
Shewmr4_0887	SSF46689	Homeodomain-like
Shewmr4_0887	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0887	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_0888	SSF52833	Thioredoxin-like
Shewmr4_0889	SSF53474	alpha/beta-Hydrolases
Shewmr4_0893	SSF52141	Uracil-DNA glycosylase-like
Shewmr4_0894	SSF48576	Terpenoid synthases
Shewmr4_0895	SSF141091	L21p-like
Shewmr4_0896	SSF110324	Ribosomal L27 protein-like
Shewmr4_0897	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0897	SSF82051	Obg GTP-binding protein N-terminal domain
Shewmr4_0900	SSF53597	Dihydrofolate reductase-like
Shewmr4_0902	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0903	SSF56300	Metallo-dependent phosphatases
Shewmr4_0904	SSF110069	ApaG-like
Shewmr4_0905	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0906	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_0907	SSF109998	Triger factor/SurA peptide-binding domain-like
Shewmr4_0907	SSF54534	FKBP-like
Shewmr4_0909	SSF56112	Protein kinase-like (PK-like)
Shewmr4_0910	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_0911	SSF158682	TerB-like
Shewmr4_0911	SSF46565	Chaperone J-domain
Shewmr4_0912	SSF56925	OMPA-like
Shewmr4_0913	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0913	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_0915	SSF160631	SMI1/KNR4-like
Shewmr4_0916	SSF103088	OmpA-like
Shewmr4_0917	SSF55120	Pseudouridine synthase
Shewmr4_0917	SSF55174	Alpha-L RNA-binding motif
Shewmr4_0922	SSF143631	ApbE-like
Shewmr4_0924	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0925	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_0926	SSF46689	Homeodomain-like
Shewmr4_0926	SSF51182	RmlC-like cupins
Shewmr4_0927	SSF54534	FKBP-like
Shewmr4_0928	SSF53383	PLP-dependent transferases
Shewmr4_0930	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0931	SSF51197	Clavaminate synthase-like
Shewmr4_0932	SSF82657	BolA-like
Shewmr4_0933	SSF53850	Periplasmic binding protein-like II
Shewmr4_0934	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_0935	SSF56935	Porins
Shewmr4_0941	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_0941	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_0941	SSF63380	Riboflavin synthase domain-like
Shewmr4_0942	SSF143631	ApbE-like
Shewmr4_0944	SSF47240	Ferritin-like
Shewmr4_0945	SSF47240	Ferritin-like
Shewmr4_0946	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0947	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
Shewmr4_0947	SSF56672	DNA/RNA polymerases
Shewmr4_0948	SSF53187	Zn-dependent exopeptidases
Shewmr4_0949	SSF53187	Zn-dependent exopeptidases
Shewmr4_0950	SSF56935	Porins
Shewmr4_0952	SSF53633	Carbamate kinase-like
Shewmr4_0952	SSF88697	PUA domain-like
Shewmr4_0953	SSF53720	ALDH-like
Shewmr4_0955	SSF55826	YbaK/ProRS associated domain
Shewmr4_0956	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_0957	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Shewmr4_0957	SSF53067	Actin-like ATPase domain
Shewmr4_0958	SSF46565	Chaperone J-domain
Shewmr4_0958	SSF49493	HSP40/DnaJ peptide-binding domain
Shewmr4_0958	SSF57938	DnaJ/Hsp40 cysteine-rich domain
Shewmr4_0960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0961	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0963	SSF54534	FKBP-like
Shewmr4_0964	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_0964	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_0965	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
Shewmr4_0965	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_0966	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
Shewmr4_0966	SSF52335	Methylglyoxal synthase-like
Shewmr4_0966	SSF52440	PreATP-grasp domain
Shewmr4_0966	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_0967	SSF53850	Periplasmic binding protein-like II
Shewmr4_0968	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_0969	SSF56219	DNase I-like
Shewmr4_0971	SSF51658	Xylose isomerase-like
Shewmr4_0973	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_0973	SSF88697	PUA domain-like
Shewmr4_0974	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_0974	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
Shewmr4_0976	SSF53098	Ribonuclease H-like
Shewmr4_0979	SSF56935	Porins
Shewmr4_0981	SSF47240	Ferritin-like
Shewmr4_0982	SSF102220	DNA polymerase III psi subunit
Shewmr4_0983	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_0984	SSF102114	Radical SAM enzymes
Shewmr4_0985	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_0986	SSF117991	YbeD/HP0495-like
Shewmr4_0987	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0987	SSF69189	Penicillin-binding protein associated domain
Shewmr4_0988	SSF110997	Sporulation related repeat
Shewmr4_0988	SSF50685	Barwin-like endoglucanases
Shewmr4_0989	SSF53955	Lysozyme-like
Shewmr4_0991	SSF56519	Penicillin binding protein dimerisation domain
Shewmr4_0991	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_0992	SSF75217	alpha/beta knot
Shewmr4_0993	SSF81301	Nucleotidyltransferase
Shewmr4_0994	SSF52374	Nucleotidylyl transferase
Shewmr4_0995	SSF48019	post-AAA+ oligomerization domain-like
Shewmr4_0995	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_0997	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_0997	SSF50677	ValRS/IleRS/LeuRS editing domain
Shewmr4_0997	SSF52374	Nucleotidylyl transferase
Shewmr4_0999	SSF54523	Pili subunits
Shewmr4_1000	SSF56317	Carbon-nitrogen hydrolase
Shewmr4_1001	SSF54631	CBS-domain pair
Shewmr4_1001	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_1002	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1003	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1004	SSF102114	Radical SAM enzymes
Shewmr4_1006	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1007	SSF53178	Peptidyl-tRNA hydrolase-like
Shewmr4_1008	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1008	SSF81271	TGS-like
Shewmr4_1013	SSF46557	GreA transcript cleavage protein, N-terminal domain
Shewmr4_1013	SSF54534	FKBP-like
Shewmr4_1015	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1016	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1017	SSF75471	YhbY-like
Shewmr4_1018	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1019	SSF140990	FtsH protease domain-like
Shewmr4_1019	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1020	SSF51717	Dihydropteroate synthetase-like
Shewmr4_1021	SSF53738	Phosphoglucomutase, first 3 domains
Shewmr4_1021	SSF55957	Phosphoglucomutase, C-terminal domain
Shewmr4_1022	SSF51351	Triosephosphate isomerase (TIM)
Shewmr4_1024	SSF74942	YhbC-like, C-terminal domain
Shewmr4_1024	SSF75420	YhbC-like, N-terminal domain
Shewmr4_1025	SSF47794	Rad51 N-terminal domain-like
Shewmr4_1025	SSF50249	Nucleic acid-binding proteins
Shewmr4_1025	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Shewmr4_1025	SSF69705	Transcription factor NusA, N-terminal domain
Shewmr4_1026	SSF46955	Putative DNA-binding domain
Shewmr4_1026	SSF50447	Translation proteins
Shewmr4_1026	SSF52156	Initiation factor IF2/eIF5b, domain 3
Shewmr4_1026	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1027	SSF89919	Ribosome-binding factor A, RbfA
Shewmr4_1028	SSF55120	Pseudouridine synthase
Shewmr4_1028	SSF88697	PUA domain-like
Shewmr4_1029	SSF47060	S15/NS1 RNA-binding domain
Shewmr4_1030	SSF141868	EAL domain-like
Shewmr4_1030	SSF55073	Nucleotide cyclase
Shewmr4_1031	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Shewmr4_1031	SSF50249	Nucleic acid-binding proteins
Shewmr4_1031	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1031	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
Shewmr4_1031	SSF55666	Ribonuclease PH domain 2-like
Shewmr4_1032	SSF48452	TPR-like
Shewmr4_1033	SSF50447	Translation proteins
Shewmr4_1033	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1033	SSF54980	EF-G C-terminal domain-like
Shewmr4_1034	SSF51556	Metallo-dependent hydrolases
Shewmr4_1036	SSF111364	Tsx-like channel
Shewmr4_1037	SSF51569	Aldolase
Shewmr4_1038	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Shewmr4_1038	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Shewmr4_1038	SSF54680	Pyrimidine nucleoside phosphorylase C-terminal domain
Shewmr4_1039	SSF143856	DeoB insert domain-like
Shewmr4_1039	SSF53649	Alkaline phosphatase-like
Shewmr4_1040	SSF53167	Purine and uridine phosphorylases
Shewmr4_1042	SSF56784	HAD-like
Shewmr4_1043	SSF53474	alpha/beta-Hydrolases
Shewmr4_1044	SSF141371	PilZ domain-like
Shewmr4_1045	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1045	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1046	SSF141371	PilZ domain-like
Shewmr4_1047	SSF52172	CheY-like
Shewmr4_1048	SSF53822	Periplasmic binding protein-like I
Shewmr4_1049	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_1049	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1049	SSF52172	CheY-like
Shewmr4_1049	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1050	SSF89155	TorD-like
Shewmr4_1051	SSF50692	ADC-like
Shewmr4_1051	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_1052	SSF48695	Multiheme cytochromes
Shewmr4_1055	SSF54631	CBS-domain pair
Shewmr4_1056	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1056	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_1057	SSF56300	Metallo-dependent phosphatases
Shewmr4_1062	SSF55718	SCP-like
Shewmr4_1063	SSF54862	4Fe-4S ferredoxins
Shewmr4_1065	SSF109604	HD-domain/PDEase-like
Shewmr4_1066	SSF141868	EAL domain-like
Shewmr4_1066	SSF55073	Nucleotide cyclase
Shewmr4_1067	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_1068	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1069	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1069	SSF53850	Periplasmic binding protein-like II
Shewmr4_1070	SSF53850	Periplasmic binding protein-like II
Shewmr4_1071	SSF82784	OsmC-like
Shewmr4_1072	SSF46689	Homeodomain-like
Shewmr4_1072	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_1073	SSF111369	HlyD-like secretion proteins
Shewmr4_1074	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1074	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1074	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1075	SSF109604	HD-domain/PDEase-like
Shewmr4_1076	SSF49503	Cupredoxins
Shewmr4_1077	SSF141868	EAL domain-like
Shewmr4_1077	SSF55073	Nucleotide cyclase
Shewmr4_1079	SSF46458	Globin-like
Shewmr4_1081	SSF46689	Homeodomain-like
Shewmr4_1081	SSF51182	RmlC-like cupins
Shewmr4_1082	SSF103473	MFS general substrate transporter
Shewmr4_1083	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1083	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1083	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1084	SSF111369	HlyD-like secretion proteins
Shewmr4_1085	SSF53850	Periplasmic binding protein-like II
Shewmr4_1086	SSF56300	Metallo-dependent phosphatases
Shewmr4_1087	SSF50998	Quinoprotein alcohol dehydrogenase-like
Shewmr4_1087	SSF53300	vWA-like
Shewmr4_1089	SSF52833	Thioredoxin-like
Shewmr4_1090	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_1091	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1091	SSF53850	Periplasmic binding protein-like II
Shewmr4_1093	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1094	SSF53383	PLP-dependent transferases
Shewmr4_1096	SSF53597	Dihydrofolate reductase-like
Shewmr4_1096	SSF53927	Cytidine deaminase-like
Shewmr4_1097	SSF63380	Riboflavin synthase domain-like
Shewmr4_1098	SSF142695	RibA-like
Shewmr4_1098	SSF55821	YrdC/RibB
Shewmr4_1099	SSF52121	Lumazine synthase
Shewmr4_1100	SSF48013	NusB-like
Shewmr4_1101	SSF55326	PurM N-terminal domain-like
Shewmr4_1101	SSF56042	PurM C-terminal domain-like
Shewmr4_1102	SSF101307	YutG-like
Shewmr4_1103	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_1104	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1106	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1106	SSF53850	Periplasmic binding protein-like II
Shewmr4_1109	SSF158472	HAMP domain-like
Shewmr4_1109	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_1109	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1109	SSF52172	CheY-like
Shewmr4_1109	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1110	SSF50249	Nucleic acid-binding proteins
Shewmr4_1110	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1111	SSF109604	HD-domain/PDEase-like
Shewmr4_1111	SSF55021	ACT-like
Shewmr4_1111	SSF81271	TGS-like
Shewmr4_1111	SSF81301	Nucleotidyltransferase
Shewmr4_1113	SSF101386	all-alpha NTP pyrophosphatases
Shewmr4_1114	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_1114	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1115	SSF51604	Enolase C-terminal domain-like
Shewmr4_1115	SSF54826	Enolase N-terminal domain-like
Shewmr4_1117	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1118	SSF69765	IpsF-like
Shewmr4_1119	SSF55120	Pseudouridine synthase
Shewmr4_1120	SSF64167	SurE-like
Shewmr4_1121	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1122	SSF51261	Duplicated hybrid motif
Shewmr4_1123	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_1123	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_1124	SSF48334	DNA repair protein MutS, domain III
Shewmr4_1124	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1124	SSF53150	DNA repair protein MutS, domain II
Shewmr4_1124	SSF55271	DNA repair protein MutS, domain I
Shewmr4_1125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1125	SSF54752	RecA protein, C-terminal domain
Shewmr4_1127	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Shewmr4_1127	SSF50447	Translation proteins
Shewmr4_1127	SSF55186	ThrRS/AlaRS common domain
Shewmr4_1127	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1128	SSF53633	Carbamate kinase-like
Shewmr4_1128	SSF55021	ACT-like
Shewmr4_1129	SSF117130	CsrA-like
Shewmr4_1130	SSF46589	tRNA-binding arm
Shewmr4_1130	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_1130	SSF50677	ValRS/IleRS/LeuRS editing domain
Shewmr4_1130	SSF52374	Nucleotidylyl transferase
Shewmr4_1131	SSF102400	DNA polymerase III chi subunit
Shewmr4_1132	SSF69754	Ribosome binding protein Y (YfiA homologue)
Shewmr4_1133	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_1134	SSF47175	Cytochromes
Shewmr4_1135	SSF48295	TrpR-like
Shewmr4_1137	SSF54534	FKBP-like
Shewmr4_1138	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1138	SSF53633	Carbamate kinase-like
Shewmr4_1138	SSF55021	ACT-like
Shewmr4_1138	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_1139	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1139	SSF55060	GHMP Kinase, C-terminal domain
Shewmr4_1140	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_1142	SSF53850	Periplasmic binding protein-like II
Shewmr4_1143	SSF50156	PDZ domain-like
Shewmr4_1143	SSF52096	ClpP/crotonase
Shewmr4_1143	SSF69304	Tricorn protease N-terminal domain
Shewmr4_1143	SSF69322	Tricorn protease domain 2
Shewmr4_1145	SSF82784	OsmC-like
Shewmr4_1149	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_1149	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1150	SSF69754	Ribosome binding protein Y (YfiA homologue)
Shewmr4_1151	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_1151	SSF52172	CheY-like
Shewmr4_1152	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1153	SSF52499	Isochorismatase-like hydrolases
Shewmr4_1154	SSF75625	YebC-like
Shewmr4_1155	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1157	SSF46689	Homeodomain-like
Shewmr4_1157	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_1158	SSF51395	FMN-linked oxidoreductases
Shewmr4_1159	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1159	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1160	SSF141868	EAL domain-like
Shewmr4_1160	SSF55073	Nucleotide cyclase
Shewmr4_1160	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_1161	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1164	SSF46955	Putative DNA-binding domain
Shewmr4_1165	SSF48173	Cryptochrome/photolyase FAD-binding domain
Shewmr4_1165	SSF52425	Cryptochrome/photolyase, N-terminal domain
Shewmr4_1166	SSF54427	NTF2-like
Shewmr4_1167	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1168	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1170	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1177	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_1178	SSF101874	YceI-like
Shewmr4_1179	SSF111148	YggX-like
Shewmr4_1180	SSF48150	DNA-glycosylase
Shewmr4_1180	SSF55811	Nudix
Shewmr4_1181	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1183	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_1185	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1185	SSF53850	Periplasmic binding protein-like II
Shewmr4_1187	SSF102114	Radical SAM enzymes
Shewmr4_1188	SSF52972	ITPase-like
Shewmr4_1190	SSF69786	YggU-like
Shewmr4_1192	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_1192	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1193	SSF51419	PLP-binding barrel
Shewmr4_1194	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1195	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1196	SSF52833	Thioredoxin-like
Shewmr4_1197	SSF53800	Chelatase
Shewmr4_1198	SSF53098	Ribonuclease H-like
Shewmr4_1199	SSF143456	VC0467-like
Shewmr4_1200	SSF55159	eIF1-like
Shewmr4_1204	SSF52833	Thioredoxin-like
Shewmr4_1205	SSF50182	Sm-like ribonucleoproteins
Shewmr4_1205	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Shewmr4_1205	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Shewmr4_1206	SSF103088	OmpA-like
Shewmr4_1206	SSF103647	TSP type-3 repeat
Shewmr4_1207	SSF53383	PLP-dependent transferases
Shewmr4_1208	SSF109604	HD-domain/PDEase-like
Shewmr4_1208	SSF55781	GAF domain-like
Shewmr4_1209	SSF54427	NTF2-like
Shewmr4_1210	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1211	SSF55073	Nucleotide cyclase
Shewmr4_1212	SSF53850	Periplasmic binding protein-like II
Shewmr4_1214	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1215	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1218	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1219	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1220	SSF51182	RmlC-like cupins
Shewmr4_1222	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1222	SSF53850	Periplasmic binding protein-like II
Shewmr4_1223	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Shewmr4_1223	SSF56300	Metallo-dependent phosphatases
Shewmr4_1224	SSF54631	CBS-domain pair
Shewmr4_1225	SSF102114	Radical SAM enzymes
Shewmr4_1226	SSF48452	TPR-like
Shewmr4_1228	SSF51717	Dihydropteroate synthetase-like
Shewmr4_1228	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Shewmr4_1229	SSF52954	Class II aaRS ABD-related
Shewmr4_1229	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1230	SSF48452	TPR-like
Shewmr4_1231	SSF50998	Quinoprotein alcohol dehydrogenase-like
Shewmr4_1232	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1234	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
Shewmr4_1234	SSF54631	CBS-domain pair
Shewmr4_1235	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_1235	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_1235	SSF54810	GMP synthetase C-terminal dimerisation domain
Shewmr4_1236	SSF53927	Cytidine deaminase-like
Shewmr4_1237	SSF53850	Periplasmic binding protein-like II
Shewmr4_1237	SSF53955	Lysozyme-like
Shewmr4_1238	SSF109736	FGAM synthase PurL, linker domain
Shewmr4_1238	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_1238	SSF55326	PurM N-terminal domain-like
Shewmr4_1238	SSF56042	PurM C-terminal domain-like
Shewmr4_1238	SSF82697	PurS-like
Shewmr4_1243	SSF103190	Sensory domain-like
Shewmr4_1243	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1245	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1245	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1245	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1246	SSF111369	HlyD-like secretion proteins
Shewmr4_1247	SSF46689	Homeodomain-like
Shewmr4_1248	SSF103515	Autotransporter
Shewmr4_1249	SSF54626	Chalcone isomerase
Shewmr4_1254	SSF140566	FlgN-like
Shewmr4_1255	SSF101498	Anti-sigma factor FlgM
Shewmr4_1257	SSF50341	CheW-like
Shewmr4_1257	SSF52172	CheY-like
Shewmr4_1258	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Shewmr4_1258	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1262	SSF117143	Flagellar hook protein flgE
Shewmr4_1263	SSF117143	Flagellar hook protein flgE
Shewmr4_1264	SSF117143	Flagellar hook protein flgE
Shewmr4_1268	SSF64518	Phase 1 flagellin
Shewmr4_1269	SSF64518	Phase 1 flagellin
Shewmr4_1270	SSF64518	Phase 1 flagellin
Shewmr4_1272	SSF48295	TrpR-like
Shewmr4_1273	SSF64518	Phase 1 flagellin
Shewmr4_1274	SSF160214	FlaG-like
Shewmr4_1277	SSF101116	Flagellar export chaperone FliS
Shewmr4_1278	SSF46689	Homeodomain-like
Shewmr4_1278	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1279	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1279	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_1279	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1280	SSF46689	Homeodomain-like
Shewmr4_1280	SSF52172	CheY-like
Shewmr4_1280	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1283	SSF48029	FliG
Shewmr4_1284	SSF160527	V-type ATPase subunit E-like
Shewmr4_1285	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1289	SSF101801	Surface presentation of antigens (SPOA)
Shewmr4_1289	SSF103039	CheC-like
Shewmr4_1290	SSF101801	Surface presentation of antigens (SPOA)
Shewmr4_1295	SSF160544	EscU C-terminal domain-like
Shewmr4_1297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1298	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1299	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_1299	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_1300	SSF52172	CheY-like
Shewmr4_1301	SSF75708	Chemotaxis phosphatase CheZ
Shewmr4_1302	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_1302	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1302	SSF50341	CheW-like
Shewmr4_1302	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1303	SSF52172	CheY-like
Shewmr4_1303	SSF52738	Methylesterase CheB, C-terminal domain
Shewmr4_1305	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1306	SSF50341	CheW-like
Shewmr4_1307	SSF50341	CheW-like
Shewmr4_1309	SSF160544	EscU C-terminal domain-like
Shewmr4_1312	SSF52172	CheY-like
Shewmr4_1313	SSF103473	MFS general substrate transporter
Shewmr4_1314	SSF50104	Translation proteins SH3-like domain
Shewmr4_1314	SSF82679	N-utilization substance G protein NusG, N-terminal domain
Shewmr4_1316	SSF158446	IVS-encoded protein-like
Shewmr4_1318	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1319	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1321	SSF53383	PLP-dependent transferases
Shewmr4_1322	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_1325	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1326	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_1327	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_1328	SSF51182	RmlC-like cupins
Shewmr4_1328	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1329	SSF53738	Phosphoglucomutase, first 3 domains
Shewmr4_1329	SSF55957	Phosphoglucomutase, C-terminal domain
Shewmr4_1330	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_1330	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1330	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Shewmr4_1333	SSF53738	Phosphoglucomutase, first 3 domains
Shewmr4_1333	SSF55957	Phosphoglucomutase, C-terminal domain
Shewmr4_1335	SSF51182	RmlC-like cupins
Shewmr4_1337	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1337	SSF55781	GAF domain-like
Shewmr4_1337	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1338	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1339	SSF51182	RmlC-like cupins
Shewmr4_1342	SSF159270	YmcC-like
Shewmr4_1344	SSF52151	FabD/lysophospholipase-like
Shewmr4_1345	SSF52954	Class II aaRS ABD-related
Shewmr4_1345	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1345	SSF55826	YbaK/ProRS associated domain
Shewmr4_1346	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_1347	SSF118196	YaeB-like
Shewmr4_1349	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_1349	SSF51556	Metallo-dependent hydrolases
Shewmr4_1350	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_1350	SSF51556	Metallo-dependent hydrolases
Shewmr4_1351	SSF81273	H-NS histone-like proteins
Shewmr4_1352	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_1353	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_1353	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_1355	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1356	SSF48695	Multiheme cytochromes
Shewmr4_1357	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1357	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_1358	SSF53955	Lysozyme-like
Shewmr4_1358	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_1359	SSF46689	Homeodomain-like
Shewmr4_1359	SSF52172	CheY-like
Shewmr4_1359	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1360	SSF103190	Sensory domain-like
Shewmr4_1360	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1360	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1365	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Shewmr4_1365	SSF52374	Nucleotidylyl transferase
Shewmr4_1366	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1366	SSF90123	ABC transporter transmembrane region
Shewmr4_1367	SSF46689	Homeodomain-like
Shewmr4_1367	SSF48150	DNA-glycosylase
Shewmr4_1367	SSF55945	TATA-box binding protein-like
Shewmr4_1367	SSF57884	Ada DNA repair protein, N-terminal domain (N-Ada 10)
Shewmr4_1368	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Shewmr4_1368	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
Shewmr4_1369	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1370	SSF52799	(Phosphotyrosine protein) phosphatases II
Shewmr4_1371	SSF56024	Phospholipase D/nuclease
Shewmr4_1372	SSF50341	CheW-like
Shewmr4_1372	SSF52172	CheY-like
Shewmr4_1373	SSF118215	Proton glutamate symport protein
Shewmr4_1374	SSF49785	Galactose-binding domain-like
Shewmr4_1375	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1377	SSF55120	Pseudouridine synthase
Shewmr4_1378	SSF52833	Thioredoxin-like
Shewmr4_1381	SSF111337	QueA-like
Shewmr4_1382	SSF51713	tRNA-guanine transglycosylase
Shewmr4_1384	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1385	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1387	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_1388	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1388	SSF75615	Siroheme synthase middle domains-like
Shewmr4_1389	SSF52980	Restriction endonuclease-like
Shewmr4_1390	SSF49785	Galactose-binding domain-like
Shewmr4_1390	SSF52743	Subtilisin-like
Shewmr4_1390	SSF54897	Protease propeptides/inhibitors
Shewmr4_1391	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_1393	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1393	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1393	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1394	SSF111369	HlyD-like secretion proteins
Shewmr4_1396	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_1397	SSF56935	Porins
Shewmr4_1400	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_1400	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_1402	SSF48452	TPR-like
Shewmr4_1402	SSF53300	vWA-like
Shewmr4_1403	SSF53300	vWA-like
Shewmr4_1406	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1407	SSF53901	Thiolase-like
Shewmr4_1408	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_1408	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1408	SSF52096	ClpP/crotonase
Shewmr4_1411	SSF101898	NHL repeat
Shewmr4_1411	SSF141868	EAL domain-like
Shewmr4_1411	SSF50978	WD40 repeat-like
Shewmr4_1411	SSF55073	Nucleotide cyclase
Shewmr4_1411	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_1412	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_1413	SSF53254	Phosphoglycerate mutase-like
Shewmr4_1414	SSF160443	SMR domain-like
Shewmr4_1415	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1416	SSF103263	Chorismate synthase, AroC
Shewmr4_1417	SSF103473	MFS general substrate transporter
Shewmr4_1418	SSF111331	NAD kinase/diacylglycerol kinase-like
Shewmr4_1420	SSF75217	alpha/beta knot
Shewmr4_1421	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1422	SSF53901	Thiolase-like
Shewmr4_1423	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1423	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_1424	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1424	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_1426	SSF55120	Pseudouridine synthase
Shewmr4_1427	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_1427	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_1428	SSF110997	Sporulation related repeat
Shewmr4_1430	SSF53271	PRTase-like
Shewmr4_1430	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_1433	SSF56712	Prokaryotic type I DNA topoisomerase
Shewmr4_1434	SSF53474	alpha/beta-Hydrolases
Shewmr4_1435	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_1436	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1438	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1439	SSF47741	CO dehydrogenase ISP C-domain like
Shewmr4_1439	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_1440	SSF56003	Molybdenum cofactor-binding domain
Shewmr4_1442	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1446	SSF52980	Restriction endonuclease-like
Shewmr4_1447	SSF56219	DNase I-like
Shewmr4_1448	SSF54909	Dimeric alpha+beta barrel
Shewmr4_1451	SSF56935	Porins
Shewmr4_1453	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1454	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1457	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_1458	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_1459	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_1460	SSF47648	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Shewmr4_1460	SSF52418	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Shewmr4_1461	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_1462	SSF56322	ADC synthase
Shewmr4_1463	SSF89550	PHP domain-like
Shewmr4_1464	SSF55821	YrdC/RibB
Shewmr4_1466	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1467	SSF55120	Pseudouridine synthase
Shewmr4_1467	SSF55174	Alpha-L RNA-binding motif
Shewmr4_1468	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1469	SSF53474	alpha/beta-Hydrolases
Shewmr4_1470	SSF52096	ClpP/crotonase
Shewmr4_1471	SSF46689	Homeodomain-like
Shewmr4_1472	SSF52096	ClpP/crotonase
Shewmr4_1474	SSF51126	Pectin lyase-like
Shewmr4_1475	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1476	SSF53474	alpha/beta-Hydrolases
Shewmr4_1478	SSF52266	SGNH hydrolase
Shewmr4_1479	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1481	SSF51306	LexA/Signal peptidase
Shewmr4_1483	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1484	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Shewmr4_1486	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1490	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_1490	SSF75138	HprK N-terminal domain-like
Shewmr4_1491	SSF53067	Actin-like ATPase domain
Shewmr4_1493	SSF102114	Radical SAM enzymes
Shewmr4_1494	SSF51998	PFL-like glycyl radical enzymes
Shewmr4_1497	SSF56935	Porins
Shewmr4_1499	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1500	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_1502	SSF53901	Thiolase-like
Shewmr4_1504	SSF49344	CBD9-like
Shewmr4_1506	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1507	SSF64383	Cell-division protein ZipA, C-terminal domain
Shewmr4_1508	SSF47781	RuvA domain 2-like
Shewmr4_1508	SSF50249	Nucleic acid-binding proteins
Shewmr4_1508	SSF52113	BRCT domain
Shewmr4_1508	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Shewmr4_1510	SSF109604	HD-domain/PDEase-like
Shewmr4_1511	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1512	SSF52833	Thioredoxin-like
Shewmr4_1515	SSF51206	cAMP-binding domain-like
Shewmr4_1515	SSF54631	CBS-domain pair
Shewmr4_1516	SSF53098	Ribonuclease H-like
Shewmr4_1517	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1518	SSF50129	GroES-like
Shewmr4_1518	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1520	SSF53901	Thiolase-like
Shewmr4_1521	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1521	SSF48008	GntR ligand-binding domain-like
Shewmr4_1522	SSF56784	HAD-like
Shewmr4_1524	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Shewmr4_1524	SSF56300	Metallo-dependent phosphatases
Shewmr4_1525	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1527	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1528	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1534	SSF49299	PKD domain
Shewmr4_1534	SSF56219	DNase I-like
Shewmr4_1534	SSF74853	Lamin A/C globular tail domain
Shewmr4_1539	SSF46565	Chaperone J-domain
Shewmr4_1540	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1541	SSF52833	Thioredoxin-like
Shewmr4_1542	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1545	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_1546	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1547	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_1547	SSF52172	CheY-like
Shewmr4_1548	SSF46600	C-terminal UvrC-binding domain of UvrB
Shewmr4_1548	SSF47781	RuvA domain 2-like
Shewmr4_1548	SSF82771	GIY-YIG endonuclease
Shewmr4_1550	SSF47729	IHF-like DNA-binding proteins
Shewmr4_1552	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1554	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1557	SSF51419	PLP-binding barrel
Shewmr4_1558	SSF56276	S-adenosylmethionine decarboxylase
Shewmr4_1559	SSF50475	FMN-binding split barrel
Shewmr4_1561	SSF101874	YceI-like
Shewmr4_1563	SSF52091	SpoIIaa-like
Shewmr4_1564	SSF50630	Acid proteases
Shewmr4_1565	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_1565	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1566	SSF158442	DsbB-like
Shewmr4_1568	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1568	SSF48008	GntR ligand-binding domain-like
Shewmr4_1572	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
Shewmr4_1572	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
Shewmr4_1573	SSF52833	Thioredoxin-like
Shewmr4_1576	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1577	SSF109604	HD-domain/PDEase-like
Shewmr4_1579	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1580	SSF52172	CheY-like
Shewmr4_1582	SSF118215	Proton glutamate symport protein
Shewmr4_1583	SSF49373	Invasin/intimin cell-adhesion fragments
Shewmr4_1584	SSF55909	Pentein
Shewmr4_1585	SSF56712	Prokaryotic type I DNA topoisomerase
Shewmr4_1585	SSF57783	Zinc beta-ribbon
Shewmr4_1587	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1587	SSF53850	Periplasmic binding protein-like II
Shewmr4_1588	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_1588	SSF52172	CheY-like
Shewmr4_1589	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_1590	SSF51569	Aldolase
Shewmr4_1592	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_1592	SSF52009	Phosphohistidine domain
Shewmr4_1592	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_1593	SSF46548	alpha-helical ferredoxin
Shewmr4_1593	SSF55103	FAD-linked oxidases, C-terminal domain
Shewmr4_1593	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_1595	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1596	SSF52025	PA domain
Shewmr4_1596	SSF52743	Subtilisin-like
Shewmr4_1598	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1598	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_1600	SSF51197	Clavaminate synthase-like
Shewmr4_1601	SSF48557	L-aspartase-like
Shewmr4_1602	SSF101322	YcfC-like
Shewmr4_1603	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_1604	SSF55811	Nudix
Shewmr4_1605	SSF55120	Pseudouridine synthase
Shewmr4_1606	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_1608	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_1609	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_1609	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1610	SSF49785	Galactose-binding domain-like
Shewmr4_1610	SSF52743	Subtilisin-like
Shewmr4_1614	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1614	SSF53850	Periplasmic binding protein-like II
Shewmr4_1616	SSF53213	LigB-like
Shewmr4_1618	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1619	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_1621	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1621	SSF53850	Periplasmic binding protein-like II
Shewmr4_1622	SSF103473	MFS general substrate transporter
Shewmr4_1625	SSF88697	PUA domain-like
Shewmr4_1627	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1627	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1627	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1628	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1628	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1628	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1629	SSF111369	HlyD-like secretion proteins
Shewmr4_1630	SSF48256	Citrate synthase
Shewmr4_1631	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Shewmr4_1632	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
Shewmr4_1633	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Shewmr4_1633	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1633	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_1634	SSF46548	alpha-helical ferredoxin
Shewmr4_1634	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_1635	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_1636	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Shewmr4_1636	SSF51230	Single hybrid motif
Shewmr4_1636	SSF52777	CoA-dependent acyltransferases
Shewmr4_1637	SSF52210	Succinyl-CoA synthetase domains
Shewmr4_1637	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_1638	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1638	SSF52210	Succinyl-CoA synthetase domains
Shewmr4_1639	SSF54534	FKBP-like
Shewmr4_1640	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1641	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1642	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_1643	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1645	SSF143865	CorA soluble domain-like
Shewmr4_1645	SSF144083	Magnesium transport protein CorA, transmembrane region
Shewmr4_1646	SSF50249	Nucleic acid-binding proteins
Shewmr4_1647	SSF54736	ClpS-like
Shewmr4_1648	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1648	SSF81923	Double Clp-N motif
Shewmr4_1649	SSF50249	Nucleic acid-binding proteins
Shewmr4_1650	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1651	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1653	SSF102705	NIF3 (NGG1p interacting factor 3)-like
Shewmr4_1655	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_1655	SSF50249	Nucleic acid-binding proteins
Shewmr4_1655	SSF52374	Nucleotidylyl transferase
Shewmr4_1655	SSF57770	Methionyl-tRNA synthetase (MetRS), Zn-domain
Shewmr4_1656	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Shewmr4_1656	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1657	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1658	SSF51283	dUTPase-like
Shewmr4_1659	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Shewmr4_1661	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1662	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1664	SSF51556	Metallo-dependent hydrolases
Shewmr4_1665	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1671	SSF55781	GAF domain-like
Shewmr4_1672	SSF48657	FinO-like
Shewmr4_1673	SSF50156	PDZ domain-like
Shewmr4_1673	SSF52096	ClpP/crotonase
Shewmr4_1674	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1674	SSF63737	Leukotriene A4 hydrolase N-terminal domain
Shewmr4_1678	SSF50939	Sialidases
Shewmr4_1679	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1680	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1680	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_1681	SSF51395	FMN-linked oxidoreductases
Shewmr4_1683	SSF53720	ALDH-like
Shewmr4_1683	SSF56796	Dehydroquinate synthase-like
Shewmr4_1685	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1686	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_1692	SSF47598	Ribbon-helix-helix
Shewmr4_1694	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_1697	SSF143737	YeeU-like
Shewmr4_1700	SSF46955	Putative DNA-binding domain
Shewmr4_1701	SSF46689	Homeodomain-like
Shewmr4_1701	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1703	SSF53300	vWA-like
Shewmr4_1708	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1709	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1712	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1714	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1715	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1716	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1720	SSF53067	Actin-like ATPase domain
Shewmr4_1722	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1725	SSF143548	Serine metabolism enzymes domain
Shewmr4_1726	SSF51445	(Trans)glycosidases
Shewmr4_1728	SSF54975	Acylphosphatase/BLUF domain-like
Shewmr4_1730	SSF141259	CarD-like
Shewmr4_1730	SSF143517	TRCF domain-like
Shewmr4_1730	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1733	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1735	SSF56655	Carbohydrate phosphatase
Shewmr4_1736	SSF75217	alpha/beta knot
Shewmr4_1737	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_1738	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1739	SSF53383	PLP-dependent transferases
Shewmr4_1740	SSF82649	SufE/NifU
Shewmr4_1741	SSF89360	HesB-like domain
Shewmr4_1742	SSF46565	Chaperone J-domain
Shewmr4_1742	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
Shewmr4_1743	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
Shewmr4_1743	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
Shewmr4_1743	SSF53067	Actin-like ATPase domain
Shewmr4_1744	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_1745	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_1746	SSF140319	IscX-like
Shewmr4_1747	SSF54919	Nucleoside diphosphate kinase, NDK
Shewmr4_1748	SSF49764	HSP20-like chaperones
Shewmr4_1749	SSF55021	ACT-like
Shewmr4_1750	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_1750	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_1751	SSF103473	MFS general substrate transporter
Shewmr4_1752	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
Shewmr4_1753	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1753	SSF53383	PLP-dependent transferases
Shewmr4_1755	SSF52091	SpoIIaa-like
Shewmr4_1756	SSF53098	Ribonuclease H-like
Shewmr4_1757	SSF46689	Homeodomain-like
Shewmr4_1759	SSF47616	GST C-terminal domain-like
Shewmr4_1759	SSF52833	Thioredoxin-like
Shewmr4_1760	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_1763	SSF51261	Duplicated hybrid motif
Shewmr4_1764	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Shewmr4_1764	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_1764	SSF52009	Phosphohistidine domain
Shewmr4_1765	SSF55594	HPr-like
Shewmr4_1766	SSF55021	ACT-like
Shewmr4_1767	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1768	SSF103039	CheC-like
Shewmr4_1769	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_1769	SSF53822	Periplasmic binding protein-like I
Shewmr4_1770	SSF53098	Ribonuclease H-like
Shewmr4_1771	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1773	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1774	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1774	SSF52980	Restriction endonuclease-like
Shewmr4_1775	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1775	SSF52980	Restriction endonuclease-like
Shewmr4_1776	SSF54001	Cysteine proteinases
Shewmr4_1778	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1781	SSF56672	DNA/RNA polymerases
Shewmr4_1782	SSF51306	LexA/Signal peptidase
Shewmr4_1783	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1784	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1785	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1785	SSF53850	Periplasmic binding protein-like II
Shewmr4_1786	SSF50129	GroES-like
Shewmr4_1786	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1787	SSF53474	alpha/beta-Hydrolases
Shewmr4_1788	SSF50494	Trypsin-like serine proteases
Shewmr4_1793	SSF101386	all-alpha NTP pyrophosphatases
Shewmr4_1793	SSF141734	HisI-like
Shewmr4_1794	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_1795	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_1796	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_1797	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_1797	SSF56784	HAD-like
Shewmr4_1798	SSF53383	PLP-dependent transferases
Shewmr4_1799	SSF53720	ALDH-like
Shewmr4_1800	SSF53850	Periplasmic binding protein-like II
Shewmr4_1800	SSF54913	GlnB-like
Shewmr4_1805	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1806	SSF56935	Porins
Shewmr4_1807	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_1808	SSF46589	tRNA-binding arm
Shewmr4_1808	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1809	SSF46955	Putative DNA-binding domain
Shewmr4_1809	SSF50249	Nucleic acid-binding proteins
Shewmr4_1809	SSF54991	Anticodon-binding domain of PheRS
Shewmr4_1809	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1809	SSF56037	PheT/TilS domain
Shewmr4_1810	SSF47729	IHF-like DNA-binding proteins
Shewmr4_1811	SSF50494	Trypsin-like serine proteases
Shewmr4_1812	SSF48695	Multiheme cytochromes
Shewmr4_1813	SSF55326	PurM N-terminal domain-like
Shewmr4_1813	SSF56042	PurM C-terminal domain-like
Shewmr4_1815	SSF159127	HupF/HypC-like
Shewmr4_1816	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1817	SSF54975	Acylphosphatase/BLUF domain-like
Shewmr4_1817	SSF55821	YrdC/RibB
Shewmr4_1819	SSF53163	HybD-like
Shewmr4_1820	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_1821	SSF56762	HydB/Nqo4-like
Shewmr4_1822	SSF56770	HydA/Nqo6-like
Shewmr4_1823	SSF52833	Thioredoxin-like
Shewmr4_1826	SSF143631	ApbE-like
Shewmr4_1827	SSF52172	CheY-like
Shewmr4_1828	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_1828	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_1829	SSF74650	Galactose mutarotase-like
Shewmr4_1829	SSF81296	E set domains
Shewmr4_1830	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1831	SSF141523	L,D-transpeptidase catalytic domain-like
Shewmr4_1831	SSF47090	PGBD-like
Shewmr4_1832	SSF55166	Hedgehog/DD-peptidase
Shewmr4_1834	SSF50715	Ribosomal protein L25-like
Shewmr4_1837	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_1838	SSF54631	CBS-domain pair
Shewmr4_1839	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1842	SSF50692	ADC-like
Shewmr4_1842	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_1843	SSF48695	Multiheme cytochromes
Shewmr4_1844	SSF48695	Multiheme cytochromes
Shewmr4_1846	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1847	SSF52499	Isochorismatase-like hydrolases
Shewmr4_1849	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_1851	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_1852	SSF56796	Dehydroquinate synthase-like
Shewmr4_1853	SSF53383	PLP-dependent transferases
Shewmr4_1854	SSF53056	beta-carbonic anhydrase, cab
Shewmr4_1855	SSF53474	alpha/beta-Hydrolases
Shewmr4_1856	SSF55166	Hedgehog/DD-peptidase
Shewmr4_1857	SSF53187	Zn-dependent exopeptidases
Shewmr4_1857	SSF55031	Bacterial exopeptidase dimerisation domain
Shewmr4_1858	SSF52833	Thioredoxin-like
Shewmr4_1859	SSF56935	Porins
Shewmr4_1860	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1860	SSF53850	Periplasmic binding protein-like II
Shewmr4_1861	SSF111369	HlyD-like secretion proteins
Shewmr4_1862	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1862	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1862	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1863	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_1866	SSF159594	XCC0632-like
Shewmr4_1868	SSF46689	Homeodomain-like
Shewmr4_1868	SSF51182	RmlC-like cupins
Shewmr4_1869	SSF48208	Six-hairpin glycosidases
Shewmr4_1869	SSF74650	Galactose mutarotase-like
Shewmr4_1870	SSF103473	MFS general substrate transporter
Shewmr4_1871	SSF54909	Dimeric alpha+beta barrel
Shewmr4_1872	SSF53474	alpha/beta-Hydrolases
Shewmr4_1873	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1874	SSF69118	AhpD-like
Shewmr4_1875	SSF46689	Homeodomain-like
Shewmr4_1876	SSF51445	(Trans)glycosidases
Shewmr4_1878	SSF55811	Nudix
Shewmr4_1882	SSF51391	Thiamin phosphate synthase
Shewmr4_1882	SSF53613	Ribokinase-like
Shewmr4_1883	SSF69572	Activating enzymes of the ubiquitin-like proteins
Shewmr4_1884	SSF54285	MoaD/ThiS
Shewmr4_1885	SSF110399	ThiG-like
Shewmr4_1886	SSF102114	Radical SAM enzymes
Shewmr4_1889	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1889	SSF53850	Periplasmic binding protein-like II
Shewmr4_1891	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_1892	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_1893	SSF54001	Cysteine proteinases
Shewmr4_1894	SSF50630	Acid proteases
Shewmr4_1895	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1896	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1897	SSF53850	Periplasmic binding protein-like II
Shewmr4_1897	SSF55073	Nucleotide cyclase
Shewmr4_1898	SSF50249	Nucleic acid-binding proteins
Shewmr4_1898	SSF55261	GAD domain-like
Shewmr4_1898	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1899	SSF75625	YebC-like
Shewmr4_1900	SSF53098	Ribonuclease H-like
Shewmr4_1901	SSF46929	DNA helicase RuvA subunit, C-terminal domain
Shewmr4_1901	SSF47781	RuvA domain 2-like
Shewmr4_1901	SSF50249	Nucleic acid-binding proteins
Shewmr4_1902	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1902	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1903	SSF56935	Porins
Shewmr4_1904	SSF52172	CheY-like
Shewmr4_1905	SSF53187	Zn-dependent exopeptidases
Shewmr4_1908	SSF53774	Glutaminase/Asparaginase
Shewmr4_1909	SSF52096	ClpP/crotonase
Shewmr4_1910	SSF51395	FMN-linked oxidoreductases
Shewmr4_1910	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1910	SSF51971	Nucleotide-binding domain
Shewmr4_1911	SSF53098	Ribonuclease H-like
Shewmr4_1912	SSF46689	Homeodomain-like
Shewmr4_1913	SSF54427	NTF2-like
Shewmr4_1914	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_1915	SSF47240	Ferritin-like
Shewmr4_1916	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
Shewmr4_1916	SSF51998	PFL-like glycyl radical enzymes
Shewmr4_1917	SSF56784	HAD-like
Shewmr4_1918	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_1919	SSF101904	GyrA/ParC C-terminal domain-like
Shewmr4_1919	SSF56719	Type II DNA topoisomerase
Shewmr4_1920	SSF53383	PLP-dependent transferases
Shewmr4_1921	SSF53383	PLP-dependent transferases
Shewmr4_1922	SSF55205	EPT/RTPC-like
Shewmr4_1923	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1924	SSF50249	Nucleic acid-binding proteins
Shewmr4_1925	SSF47729	IHF-like DNA-binding proteins
Shewmr4_1927	SSF48452	TPR-like
Shewmr4_1928	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_1929	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1931	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_1931	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_1932	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_1934	SSF55331	Tautomerase/MIF
Shewmr4_1935	SSF56024	Phospholipase D/nuclease
Shewmr4_1936	SSF103473	MFS general substrate transporter
Shewmr4_1937	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_1939	SSF111369	HlyD-like secretion proteins
Shewmr4_1940	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_1940	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_1940	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_1941	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_1942	SSF63829	Calcium-dependent phosphotriesterase
Shewmr4_1943	SSF47823	lambda integrase-like, N-terminal domain
Shewmr4_1943	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_1946	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1947	SSF49772	Ecotin, trypsin inhibitor
Shewmr4_1952	SSF63380	Riboflavin synthase domain-like
Shewmr4_1953	SSF57783	Zinc beta-ribbon
Shewmr4_1955	SSF52954	Class II aaRS ABD-related
Shewmr4_1955	SSF55186	ThrRS/AlaRS common domain
Shewmr4_1955	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1955	SSF81271	TGS-like
Shewmr4_1956	SSF54364	Translation initiation factor IF3, N-terminal domain
Shewmr4_1956	SSF55200	Translation initiation factor IF3, C-terminal domain
Shewmr4_1957	SSF143034	L35p-like
Shewmr4_1958	SSF74731	Ribosomal protein L20
Shewmr4_1959	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_1961	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1961	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_1962	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1962	SSF54909	Dimeric alpha+beta barrel
Shewmr4_1963	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1963	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1964	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Shewmr4_1965	SSF48019	post-AAA+ oligomerization domain-like
Shewmr4_1965	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1967	SSF46589	tRNA-binding arm
Shewmr4_1967	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_1969	SSF69721	DsrC, the gamma subunit of dissimilatory sulfite reductase
Shewmr4_1970	SSF75169	DsrEFH-like
Shewmr4_1971	SSF75169	DsrEFH-like
Shewmr4_1972	SSF75169	DsrEFH-like
Shewmr4_1974	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1974	SSF53850	Periplasmic binding protein-like II
Shewmr4_1975	SSF103473	MFS general substrate transporter
Shewmr4_1977	SSF53067	Actin-like ATPase domain
Shewmr4_1978	SSF53639	AraD/HMP-PK domain-like
Shewmr4_1979	SSF50443	FucI/AraA C-terminal domain-like
Shewmr4_1979	SSF53743	FucI/AraA N-terminal and middle domains
Shewmr4_1980	SSF56784	HAD-like
Shewmr4_1981	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_1981	SSF48008	GntR ligand-binding domain-like
Shewmr4_1982	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_1983	SSF143975	IlvD/EDD N-terminal domain-like
Shewmr4_1983	SSF52016	LeuD/IlvD-like
Shewmr4_1984	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_1985	SSF74650	Galactose mutarotase-like
Shewmr4_1986	SSF53822	Periplasmic binding protein-like I
Shewmr4_1987	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_1990	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_1991	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_1993	SSF48208	Six-hairpin glycosidases
Shewmr4_1994	SSF103473	MFS general substrate transporter
Shewmr4_1995	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_1996	SSF50370	Ricin B-like lectins
Shewmr4_1996	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_1998	SSF56935	Porins
Shewmr4_1999	SSF49899	Concanavalin A-like lectins/glucanases
Shewmr4_1999	SSF75005	Arabinanase/levansucrase/invertase
Shewmr4_2000	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_2001	SSF63829	Calcium-dependent phosphotriesterase
Shewmr4_2002	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_2004	SSF109604	HD-domain/PDEase-like
Shewmr4_2004	SSF52172	CheY-like
Shewmr4_2006	SSF81442	Cytochrome c oxidase subunit I-like
Shewmr4_2007	SSF46626	Cytochrome c
Shewmr4_2009	SSF46626	Cytochrome c
Shewmr4_2011	SSF55008	HMA, heavy metal-associated domain
Shewmr4_2011	SSF56784	HAD-like
Shewmr4_2011	SSF81653	Calcium ATPase, transduction domain A
Shewmr4_2011	SSF81665	Calcium ATPase, transmembrane domain M
Shewmr4_2014	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2014	SSF51206	cAMP-binding domain-like
Shewmr4_2015	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2016	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2019	SSF142338	CofD-like
Shewmr4_2020	SSF53383	PLP-dependent transferases
Shewmr4_2021	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2021	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_2023	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2023	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_2024	SSF49329	Cu,Zn superoxide dismutase-like
Shewmr4_2025	SSF142754	NadA-like
Shewmr4_2026	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Shewmr4_2026	SSF51230	Single hybrid motif
Shewmr4_2026	SSF52777	CoA-dependent acyltransferases
Shewmr4_2027	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_2027	SSF52922	TK C-terminal domain-like
Shewmr4_2028	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_2029	SSF53187	Zn-dependent exopeptidases
Shewmr4_2030	SSF55068	Peptide methionine sulfoxide reductase
Shewmr4_2031	SSF53738	Phosphoglucomutase, first 3 domains
Shewmr4_2031	SSF55957	Phosphoglucomutase, C-terminal domain
Shewmr4_2032	SSF47598	Ribbon-helix-helix
Shewmr4_2032	SSF82808	Replication modulator SeqA, C-terminal DNA-binding domain
Shewmr4_2033	SSF53474	alpha/beta-Hydrolases
Shewmr4_2036	SSF52218	Flavoproteins
Shewmr4_2038	SSF50104	Translation proteins SH3-like domain
Shewmr4_2038	SSF50249	Nucleic acid-binding proteins
Shewmr4_2040	SSF53383	PLP-dependent transferases
Shewmr4_2041	SSF109604	HD-domain/PDEase-like
Shewmr4_2042	SSF109604	HD-domain/PDEase-like
Shewmr4_2043	SSF51569	Aldolase
Shewmr4_2044	SSF143975	IlvD/EDD N-terminal domain-like
Shewmr4_2044	SSF52016	LeuD/IlvD-like
Shewmr4_2045	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2046	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2046	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_2047	SSF46689	Homeodomain-like
Shewmr4_2047	SSF53697	SIS domain
Shewmr4_2048	SSF50800	PK beta-barrel domain-like
Shewmr4_2048	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_2048	SSF52935	PK C-terminal domain-like
Shewmr4_2049	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_2049	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_2050	SSF46689	Homeodomain-like
Shewmr4_2050	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_2051	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2052	SSF160443	SMR domain-like
Shewmr4_2053	SSF54427	NTF2-like
Shewmr4_2054	SSF103642	Sec-C motif
Shewmr4_2054	SSF54427	NTF2-like
Shewmr4_2055	SSF141868	EAL domain-like
Shewmr4_2055	SSF55073	Nucleotide cyclase
Shewmr4_2055	SSF55781	GAF domain-like
Shewmr4_2055	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2058	SSF102114	Radical SAM enzymes
Shewmr4_2059	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2060	SSF144091	Rhomboid-like
Shewmr4_2061	SSF46600	C-terminal UvrC-binding domain of UvrB
Shewmr4_2061	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2063	SSF141868	EAL domain-like
Shewmr4_2063	SSF55073	Nucleotide cyclase
Shewmr4_2065	SSF54862	4Fe-4S ferredoxins
Shewmr4_2066	SSF142019	Nqo1 FMN-binding domain-like
Shewmr4_2066	SSF46548	alpha-helical ferredoxin
Shewmr4_2070	SSF48150	DNA-glycosylase
Shewmr4_2072	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2072	SSF53850	Periplasmic binding protein-like II
Shewmr4_2073	SSF102114	Radical SAM enzymes
Shewmr4_2074	SSF53649	Alkaline phosphatase-like
Shewmr4_2077	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_2080	SSF46689	Homeodomain-like
Shewmr4_2081	SSF55073	Nucleotide cyclase
Shewmr4_2082	SSF49464	Carboxypeptidase regulatory domain-like
Shewmr4_2082	SSF56935	Porins
Shewmr4_2083	SSF50956	Thermostable phytase (3-phytase)
Shewmr4_2084	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2085	SSF55961	Bet v1-like
Shewmr4_2087	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_2087	SSF52172	CheY-like
Shewmr4_2087	SSF55073	Nucleotide cyclase
Shewmr4_2088	SSF52172	CheY-like
Shewmr4_2088	SSF52738	Methylesterase CheB, C-terminal domain
Shewmr4_2089	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Shewmr4_2090	SSF47757	Chemotaxis receptor methyltransferase CheR, N-terminal domain
Shewmr4_2090	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2091	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2091	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2092	SSF50341	CheW-like
Shewmr4_2093	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_2093	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_2093	SSF50341	CheW-like
Shewmr4_2093	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2094	SSF52172	CheY-like
Shewmr4_2095	SSF52172	CheY-like
Shewmr4_2095	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2096	SSF52091	SpoIIaa-like
Shewmr4_2097	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2098	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2098	SSF52210	Succinyl-CoA synthetase domains
Shewmr4_2098	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2098	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_2099	SSF103473	MFS general substrate transporter
Shewmr4_2100	SSF111369	HlyD-like secretion proteins
Shewmr4_2101	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2102	SSF55073	Nucleotide cyclase
Shewmr4_2103	SSF53649	Alkaline phosphatase-like
Shewmr4_2104	SSF50993	Peptidase/esterase 'gauge' domain
Shewmr4_2104	SSF53474	alpha/beta-Hydrolases
Shewmr4_2105	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2106	SSF161111	Cation efflux protein transmembrane domain-like
Shewmr4_2107	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2109	SSF56524	Oxidoreductase molybdopterin-binding domain
Shewmr4_2111	SSF48435	Bacterial muramidases
Shewmr4_2111	SSF53955	Lysozyme-like
Shewmr4_2112	SSF141868	EAL domain-like
Shewmr4_2116	SSF46689	Homeodomain-like
Shewmr4_2117	SSF53098	Ribonuclease H-like
Shewmr4_2118	SSF56672	DNA/RNA polymerases
Shewmr4_2120	SSF56672	DNA/RNA polymerases
Shewmr4_2121	SSF53187	Zn-dependent exopeptidases
Shewmr4_2122	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2123	SSF53474	alpha/beta-Hydrolases
Shewmr4_2123	SSF82171	DPP6 N-terminal domain-like
Shewmr4_2124	SSF117457	FumA C-terminal domain-like
Shewmr4_2125	SSF56322	ADC synthase
Shewmr4_2126	SSF55811	Nudix
Shewmr4_2128	SSF50249	Nucleic acid-binding proteins
Shewmr4_2128	SSF55681	Class II aaRS and biotin synthetases
Shewmr4_2129	SSF52440	PreATP-grasp domain
Shewmr4_2129	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_2130	SSF141868	EAL domain-like
Shewmr4_2130	SSF55073	Nucleotide cyclase
Shewmr4_2130	SSF55781	GAF domain-like
Shewmr4_2130	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2131	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2132	SSF103473	MFS general substrate transporter
Shewmr4_2133	SSF51011	Glycosyl hydrolase domain
Shewmr4_2133	SSF51445	(Trans)glycosidases
Shewmr4_2134	SSF56935	Porins
Shewmr4_2135	SSF51011	Glycosyl hydrolase domain
Shewmr4_2135	SSF51445	(Trans)glycosidases
Shewmr4_2135	SSF81296	E set domains
Shewmr4_2136	SSF51445	(Trans)glycosidases
Shewmr4_2137	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2139	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2142	SSF56420	Peptide deformylase
Shewmr4_2143	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Shewmr4_2145	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_2146	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_2146	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_2147	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2148	SSF46689	Homeodomain-like
Shewmr4_2149	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2149	SSF53850	Periplasmic binding protein-like II
Shewmr4_2150	SSF56935	Porins
Shewmr4_2152	SSF48695	Multiheme cytochromes
Shewmr4_2153	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2153	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_2154	SSF50129	GroES-like
Shewmr4_2154	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2155	SSF141868	EAL domain-like
Shewmr4_2155	SSF55073	Nucleotide cyclase
Shewmr4_2155	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2157	SSF53098	Ribonuclease H-like
Shewmr4_2158	SSF53098	Ribonuclease H-like
Shewmr4_2159	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2159	SSF53850	Periplasmic binding protein-like II
Shewmr4_2160	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2161	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_2162	SSF53955	Lysozyme-like
Shewmr4_2162	SSF54106	LysM domain
Shewmr4_2165	SSF89562	RraA-like
Shewmr4_2168	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2169	SSF50891	Cyclophilin-like
Shewmr4_2171	SSF53955	Lysozyme-like
Shewmr4_2172	SSF160191	YcgL-like
Shewmr4_2173	SSF63848	Cell-division inhibitor MinC, C-terminal domain
Shewmr4_2174	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2175	SSF55229	Cell division protein MinE topological specificity domain
Shewmr4_2176	SSF47819	HRDC-like
Shewmr4_2176	SSF53098	Ribonuclease H-like
Shewmr4_2177	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_2178	SSF53474	alpha/beta-Hydrolases
Shewmr4_2179	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2182	SSF53067	Actin-like ATPase domain
Shewmr4_2183	SSF51569	Aldolase
Shewmr4_2184	SSF51316	Mss4-like
Shewmr4_2184	SSF55068	Peptide methionine sulfoxide reductase
Shewmr4_2185	SSF51197	Clavaminate synthase-like
Shewmr4_2186	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2189	SSF52788	Phosphotyrosine protein phosphatases I
Shewmr4_2191	SSF50249	Nucleic acid-binding proteins
Shewmr4_2191	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
Shewmr4_2193	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2193	SSF53850	Periplasmic binding protein-like II
Shewmr4_2195	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_2197	SSF52025	PA domain
Shewmr4_2197	SSF53187	Zn-dependent exopeptidases
Shewmr4_2198	SSF55073	Nucleotide cyclase
Shewmr4_2199	SSF63817	Sortase
Shewmr4_2200	SSF53300	vWA-like
Shewmr4_2201	SSF103088	OmpA-like
Shewmr4_2202	SSF52172	CheY-like
Shewmr4_2203	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_2203	SSF49344	CBD9-like
Shewmr4_2203	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2204	SSF53383	PLP-dependent transferases
Shewmr4_2206	SSF53067	Actin-like ATPase domain
Shewmr4_2207	SSF140356	PPK N-terminal domain-like
Shewmr4_2207	SSF143724	PHP14-like
Shewmr4_2207	SSF56024	Phospholipase D/nuclease
Shewmr4_2208	SSF109604	HD-domain/PDEase-like
Shewmr4_2208	SSF53067	Actin-like ATPase domain
Shewmr4_2209	SSF81324	Voltage-gated potassium channels
Shewmr4_2210	SSF141523	L,D-transpeptidase catalytic domain-like
Shewmr4_2211	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2214	SSF51261	Duplicated hybrid motif
Shewmr4_2215	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Shewmr4_2216	SSF46626	Cytochrome c
Shewmr4_2218	SSF158651	YejL-like
Shewmr4_2219	SSF53649	Alkaline phosphatase-like
Shewmr4_2220	SSF51395	FMN-linked oxidoreductases
Shewmr4_2221	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2221	SSF53850	Periplasmic binding protein-like II
Shewmr4_2222	SSF55073	Nucleotide cyclase
Shewmr4_2222	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2223	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_2223	SSF52172	CheY-like
Shewmr4_2224	SSF158472	HAMP domain-like
Shewmr4_2224	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2225	SSF103473	MFS general substrate transporter
Shewmr4_2226	SSF50692	ADC-like
Shewmr4_2226	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_2227	SSF54862	4Fe-4S ferredoxins
Shewmr4_2228	SSF89155	TorD-like
Shewmr4_2229	SSF103501	Respiratory nitrate reductase 1 gamma chain
Shewmr4_2230	SSF55073	Nucleotide cyclase
Shewmr4_2232	SSF46689	Homeodomain-like
Shewmr4_2234	SSF49401	Bacterial adhesins
Shewmr4_2235	SSF141729	FimD N-terminal domain-like
Shewmr4_2236	SSF49354	PapD-like
Shewmr4_2236	SSF49584	Periplasmic chaperone C-domain
Shewmr4_2237	SSF49401	Bacterial adhesins
Shewmr4_2238	SSF49401	Bacterial adhesins
Shewmr4_2240	SSF53098	Ribonuclease H-like
Shewmr4_2241	SSF49401	Bacterial adhesins
Shewmr4_2242	SSF141868	EAL domain-like
Shewmr4_2243	SSF55073	Nucleotide cyclase
Shewmr4_2244	SSF53474	alpha/beta-Hydrolases
Shewmr4_2246	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2247	SSF53613	Ribokinase-like
Shewmr4_2248	SSF53800	Chelatase
Shewmr4_2249	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2250	SSF48452	TPR-like
Shewmr4_2250	SSF52833	Thioredoxin-like
Shewmr4_2251	SSF110942	HSP90 C-terminal domain
Shewmr4_2251	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_2251	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2252	SSF111304	Recombination protein RecR
Shewmr4_2253	SSF82607	YbaB-like
Shewmr4_2254	SSF48019	post-AAA+ oligomerization domain-like
Shewmr4_2254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2255	SSF53271	PRTase-like
Shewmr4_2259	SSF51658	Xylose isomerase-like
Shewmr4_2261	SSF51395	FMN-linked oxidoreductases
Shewmr4_2262	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_2263	SSF56935	Porins
Shewmr4_2264	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Shewmr4_2264	SSF56300	Metallo-dependent phosphatases
Shewmr4_2265	SSF53474	alpha/beta-Hydrolases
Shewmr4_2267	SSF48371	ARM repeat
Shewmr4_2267	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2267	SSF63737	Leukotriene A4 hydrolase N-terminal domain
Shewmr4_2268	SSF54534	FKBP-like
Shewmr4_2269	SSF47090	PGBD-like
Shewmr4_2269	SSF53955	Lysozyme-like
Shewmr4_2272	SSF50341	CheW-like
Shewmr4_2272	SSF52172	CheY-like
Shewmr4_2273	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2274	SSF88697	PUA domain-like
Shewmr4_2275	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_2275	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_2276	SSF51182	RmlC-like cupins
Shewmr4_2279	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_2281	SSF53474	alpha/beta-Hydrolases
Shewmr4_2282	SSF53187	Zn-dependent exopeptidases
Shewmr4_2283	SSF53850	Periplasmic binding protein-like II
Shewmr4_2285	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_2287	SSF88697	PUA domain-like
Shewmr4_2289	SSF51219	TRAP-like
Shewmr4_2290	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2290	SSF53850	Periplasmic binding protein-like II
Shewmr4_2291	SSF51182	RmlC-like cupins
Shewmr4_2292	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2293	SSF55073	Nucleotide cyclase
Shewmr4_2294	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2296	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2297	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_2298	SSF51316	Mss4-like
Shewmr4_2299	SSF143422	Transposase IS200-like
Shewmr4_2301	SSF53187	Zn-dependent exopeptidases
Shewmr4_2301	SSF55031	Bacterial exopeptidase dimerisation domain
Shewmr4_2302	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2303	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2304	SSF55469	FMN-dependent nitroreductase-like
Shewmr4_2307	SSF56112	Protein kinase-like (PK-like)
Shewmr4_2309	SSF89957	MTH1187/YkoF-like
Shewmr4_2310	SSF56935	Porins
Shewmr4_2312	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2313	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2314	SSF54197	HIT-like
Shewmr4_2315	SSF50156	PDZ domain-like
Shewmr4_2315	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2316	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_2317	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_2318	SSF48695	Multiheme cytochromes
Shewmr4_2319	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_2320	SSF141523	L,D-transpeptidase catalytic domain-like
Shewmr4_2320	SSF47090	PGBD-like
Shewmr4_2321	SSF46955	Putative DNA-binding domain
Shewmr4_2322	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_2322	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_2323	SSF52096	ClpP/crotonase
Shewmr4_2324	SSF52096	ClpP/crotonase
Shewmr4_2325	SSF51230	Single hybrid motif
Shewmr4_2325	SSF51246	Rudiment single hybrid motif
Shewmr4_2325	SSF52440	PreATP-grasp domain
Shewmr4_2325	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_2326	SSF51569	Aldolase
Shewmr4_2327	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2328	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2330	SSF81296	E set domains
Shewmr4_2331	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_2334	SSF50475	FMN-binding split barrel
Shewmr4_2335	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2336	SSF143422	Transposase IS200-like
Shewmr4_2337	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_2337	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_2337	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_2338	SSF111369	HlyD-like secretion proteins
Shewmr4_2340	SSF51569	Aldolase
Shewmr4_2341	SSF55021	ACT-like
Shewmr4_2342	SSF52833	Thioredoxin-like
Shewmr4_2344	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2344	SSF53850	Periplasmic binding protein-like II
Shewmr4_2346	SSF64307	SirA-like
Shewmr4_2347	SSF48452	TPR-like
Shewmr4_2348	SSF52833	Thioredoxin-like
Shewmr4_2352	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_2353	SSF74650	Galactose mutarotase-like
Shewmr4_2353	SSF81296	E set domains
Shewmr4_2356	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2357	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2358	SSF53383	PLP-dependent transferases
Shewmr4_2359	SSF102114	Radical SAM enzymes
Shewmr4_2360	SSF53383	PLP-dependent transferases
Shewmr4_2361	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_2361	SSF52172	CheY-like
Shewmr4_2361	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2361	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2362	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_2363	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2363	SSF57829	Zn-binding ribosomal proteins
Shewmr4_2364	SSF52833	Thioredoxin-like
Shewmr4_2365	SSF56935	Porins
Shewmr4_2366	SSF48452	TPR-like
Shewmr4_2367	SSF103088	OmpA-like
Shewmr4_2368	SSF52964	TolB, N-terminal domain
Shewmr4_2368	SSF69304	Tricorn protease N-terminal domain
Shewmr4_2369	SSF74653	TolA/TonB C-terminal domain
Shewmr4_2372	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2373	SSF50993	Peptidase/esterase 'gauge' domain
Shewmr4_2373	SSF53474	alpha/beta-Hydrolases
Shewmr4_2374	SSF103088	OmpA-like
Shewmr4_2375	SSF53098	Ribonuclease H-like
Shewmr4_2376	SSF52833	Thioredoxin-like
Shewmr4_2379	SSF53271	PRTase-like
Shewmr4_2380	SSF55326	PurM N-terminal domain-like
Shewmr4_2380	SSF56042	PurM C-terminal domain-like
Shewmr4_2381	SSF53328	Formyltransferase
Shewmr4_2382	SSF56784	HAD-like
Shewmr4_2383	SSF52025	PA domain
Shewmr4_2383	SSF53187	Zn-dependent exopeptidases
Shewmr4_2384	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2384	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_2385	SSF52151	FabD/lysophospholipase-like
Shewmr4_2386	SSF56935	Porins
Shewmr4_2387	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_2387	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_2388	SSF74650	Galactose mutarotase-like
Shewmr4_2389	SSF53098	Ribonuclease H-like
Shewmr4_2390	SSF46689	Homeodomain-like
Shewmr4_2391	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_2391	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2392	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2394	SSF53901	Thiolase-like
Shewmr4_2395	SSF47336	ACP-like
Shewmr4_2396	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2397	SSF52151	FabD/lysophospholipase-like
Shewmr4_2397	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Shewmr4_2398	SSF53901	Thiolase-like
Shewmr4_2399	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_2400	SSF57829	Zn-binding ribosomal proteins
Shewmr4_2402	SSF52972	ITPase-like
Shewmr4_2403	SSF56784	HAD-like
Shewmr4_2404	SSF55120	Pseudouridine synthase
Shewmr4_2404	SSF55174	Alpha-L RNA-binding motif
Shewmr4_2405	SSF50249	Nucleic acid-binding proteins
Shewmr4_2406	SSF52091	SpoIIaa-like
Shewmr4_2407	SSF50249	Nucleic acid-binding proteins
Shewmr4_2408	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2410	SSF53098	Ribonuclease H-like
Shewmr4_2411	SSF53927	Cytidine deaminase-like
Shewmr4_2413	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2415	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2417	SSF52833	Thioredoxin-like
Shewmr4_2420	SSF158997	Trm112p-like
Shewmr4_2421	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2422	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2422	SSF90123	ABC transporter transmembrane region
Shewmr4_2423	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_2427	SSF141371	PilZ domain-like
Shewmr4_2428	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2431	SSF55781	GAF domain-like
Shewmr4_2431	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2432	SSF52172	CheY-like
Shewmr4_2435	SSF50952	Soluble quinoprotein glucose dehydrogenase
Shewmr4_2436	SSF58113	Apolipoprotein A-I
Shewmr4_2438	SSF142695	RibA-like
Shewmr4_2440	SSF102114	Radical SAM enzymes
Shewmr4_2441	SSF51998	PFL-like glycyl radical enzymes
Shewmr4_2443	SSF52151	FabD/lysophospholipase-like
Shewmr4_2444	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2448	SSF51261	Duplicated hybrid motif
Shewmr4_2449	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2450	SSF56300	Metallo-dependent phosphatases
Shewmr4_2452	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2452	SSF53850	Periplasmic binding protein-like II
Shewmr4_2453	SSF89946	Hypothetical protein VC0424
Shewmr4_2454	SSF55174	Alpha-L RNA-binding motif
Shewmr4_2455	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2456	SSF54534	FKBP-like
Shewmr4_2458	SSF55073	Nucleotide cyclase
Shewmr4_2459	SSF48452	TPR-like
Shewmr4_2460	SSF74653	TolA/TonB C-terminal domain
Shewmr4_2465	SSF53098	Ribonuclease H-like
Shewmr4_2466	SSF143422	Transposase IS200-like
Shewmr4_2467	SSF56935	Porins
Shewmr4_2468	SSF56935	Porins
Shewmr4_2469	SSF53098	Ribonuclease H-like
Shewmr4_2469	SSF56672	DNA/RNA polymerases
Shewmr4_2470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2474	SSF52768	Arginase/deacetylase
Shewmr4_2476	SSF47781	RuvA domain 2-like
Shewmr4_2477	SSF53383	PLP-dependent transferases
Shewmr4_2483	SSF46689	Homeodomain-like
Shewmr4_2483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2484	SSF53850	Periplasmic binding protein-like II
Shewmr4_2485	SSF161098	MetI-like
Shewmr4_2486	SSF161098	MetI-like
Shewmr4_2487	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2488	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2490	SSF50331	MOP-like
Shewmr4_2491	SSF109998	Triger factor/SurA peptide-binding domain-like
Shewmr4_2491	SSF54534	FKBP-like
Shewmr4_2492	SSF47729	IHF-like DNA-binding proteins
Shewmr4_2493	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2493	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_2493	SSF88697	PUA domain-like
Shewmr4_2494	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2494	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_2495	SSF52096	ClpP/crotonase
Shewmr4_2496	SSF102735	Trigger factor ribosome-binding domain
Shewmr4_2496	SSF109998	Triger factor/SurA peptide-binding domain-like
Shewmr4_2496	SSF54534	FKBP-like
Shewmr4_2497	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2497	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_2498	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_2498	SSF52374	Nucleotidylyl transferase
Shewmr4_2499	SSF50891	Cyclophilin-like
Shewmr4_2500	SSF56300	Metallo-dependent phosphatases
Shewmr4_2501	SSF47240	Ferritin-like
Shewmr4_2503	SSF50715	Ribosomal protein L25-like
Shewmr4_2503	SSF52374	Nucleotidylyl transferase
Shewmr4_2504	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2505	SSF50037	C-terminal domain of transcriptional repressors
Shewmr4_2506	SSF48695	Multiheme cytochromes
Shewmr4_2508	SSF48695	Multiheme cytochromes
Shewmr4_2509	SSF48695	Multiheme cytochromes
Shewmr4_2510	SSF48695	Multiheme cytochromes
Shewmr4_2511	SSF48695	Multiheme cytochromes
Shewmr4_2512	SSF56935	Porins
Shewmr4_2514	SSF52141	Uracil-DNA glycosylase-like
Shewmr4_2515	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2517	SSF56634	Heme-dependent catalase-like
Shewmr4_2519	SSF110738	Glycerate kinase I
Shewmr4_2520	SSF53383	PLP-dependent transferases
Shewmr4_2521	SSF52743	Subtilisin-like
Shewmr4_2522	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2524	SSF54427	NTF2-like
Shewmr4_2526	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2527	SSF46689	Homeodomain-like
Shewmr4_2527	SSF51215	Regulatory protein AraC
Shewmr4_2530	SSF103473	MFS general substrate transporter
Shewmr4_2531	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_2531	SSF51556	Metallo-dependent hydrolases
Shewmr4_2532	SSF53067	Actin-like ATPase domain
Shewmr4_2533	SSF53697	SIS domain
Shewmr4_2534	SSF51569	Aldolase
Shewmr4_2535	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2536	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2536	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2537	SSF56935	Porins
Shewmr4_2538	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2539	SSF55136	Probable bacterial effector-binding domain
Shewmr4_2540	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2541	SSF53738	Phosphoglucomutase, first 3 domains
Shewmr4_2541	SSF55957	Phosphoglucomutase, C-terminal domain
Shewmr4_2545	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2546	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_2547	SSF53474	alpha/beta-Hydrolases
Shewmr4_2548	SSF53901	Thiolase-like
Shewmr4_2549	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2554	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2555	SSF143422	Transposase IS200-like
Shewmr4_2557	SSF109755	PhoU-like
Shewmr4_2558	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2559	SSF161098	MetI-like
Shewmr4_2560	SSF161098	MetI-like
Shewmr4_2560	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
Shewmr4_2561	SSF55021	ACT-like
Shewmr4_2562	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_2563	SSF53474	alpha/beta-Hydrolases
Shewmr4_2565	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_2570	SSF52743	Subtilisin-like
Shewmr4_2572	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2574	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2575	SSF111369	HlyD-like secretion proteins
Shewmr4_2576	SSF46689	Homeodomain-like
Shewmr4_2578	SSF53474	alpha/beta-Hydrolases
Shewmr4_2580	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_2580	SSF48452	TPR-like
Shewmr4_2580	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2581	SSF49503	Cupredoxins
Shewmr4_2582	SSF55073	Nucleotide cyclase
Shewmr4_2582	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2583	SSF49899	Concanavalin A-like lectins/glucanases
Shewmr4_2583	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_2584	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_2585	SSF50814	Lipocalins
Shewmr4_2586	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2587	SSF55008	HMA, heavy metal-associated domain
Shewmr4_2587	SSF56784	HAD-like
Shewmr4_2587	SSF81653	Calcium ATPase, transduction domain A
Shewmr4_2587	SSF81665	Calcium ATPase, transmembrane domain M
Shewmr4_2588	SSF46955	Putative DNA-binding domain
Shewmr4_2589	SSF53474	alpha/beta-Hydrolases
Shewmr4_2589	SSF82171	DPP6 N-terminal domain-like
Shewmr4_2591	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2592	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_2592	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2593	SSF52096	ClpP/crotonase
Shewmr4_2594	SSF52096	ClpP/crotonase
Shewmr4_2595	SSF47203	Acyl-CoA dehydrogenase C-terminal domain-like
Shewmr4_2595	SSF56645	Acyl-CoA dehydrogenase NM domain-like
Shewmr4_2596	SSF53720	ALDH-like
Shewmr4_2597	SSF53901	Thiolase-like
Shewmr4_2598	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_2600	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2601	SSF56925	OMPA-like
Shewmr4_2603	SSF47616	GST C-terminal domain-like
Shewmr4_2603	SSF52833	Thioredoxin-like
Shewmr4_2604	SSF56529	FAH
Shewmr4_2605	SSF46689	Homeodomain-like
Shewmr4_2605	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2605	SSF55021	ACT-like
Shewmr4_2606	SSF55248	PCD-like
Shewmr4_2607	SSF56534	Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
Shewmr4_2608	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_2609	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2610	SSF54862	4Fe-4S ferredoxins
Shewmr4_2612	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2612	SSF53850	Periplasmic binding protein-like II
Shewmr4_2613	SSF48695	Multiheme cytochromes
Shewmr4_2616	SSF53067	Actin-like ATPase domain
Shewmr4_2617	SSF56655	Carbohydrate phosphatase
Shewmr4_2618	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2619	SSF89550	PHP domain-like
Shewmr4_2620	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2622	SSF50249	Nucleic acid-binding proteins
Shewmr4_2623	SSF116726	TrkA C-terminal domain-like
Shewmr4_2623	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2624	SSF55073	Nucleotide cyclase
Shewmr4_2625	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2625	SSF56037	PheT/TilS domain
Shewmr4_2625	SSF82829	MesJ substrate recognition domain-like
Shewmr4_2626	SSF160975	AF1531-like
Shewmr4_2626	SSF89550	PHP domain-like
Shewmr4_2627	SSF53098	Ribonuclease H-like
Shewmr4_2628	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_2629	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2630	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2631	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2632	SSF111384	OmpH-like
Shewmr4_2634	SSF50156	PDZ domain-like
Shewmr4_2635	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2635	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_2635	SSF69055	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
Shewmr4_2637	SSF64005	Undecaprenyl diphosphate synthase
Shewmr4_2638	SSF55194	Ribosome recycling factor, RRF
Shewmr4_2639	SSF53633	Carbamate kinase-like
Shewmr4_2640	SSF46934	UBA-like
Shewmr4_2640	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
Shewmr4_2641	SSF52313	Ribosomal protein S2
Shewmr4_2642	SSF55920	Creatinase/aminopeptidase
Shewmr4_2643	SSF109604	HD-domain/PDEase-like
Shewmr4_2643	SSF55021	ACT-like
Shewmr4_2643	SSF81301	Nucleotidyltransferase
Shewmr4_2643	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Shewmr4_2644	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2646	SSF109604	HD-domain/PDEase-like
Shewmr4_2646	SSF54631	CBS-domain pair
Shewmr4_2646	SSF55781	GAF domain-like
Shewmr4_2647	SSF53328	Formyltransferase
Shewmr4_2647	SSF55021	ACT-like
Shewmr4_2648	SSF55604	Glucose permease domain IIB
Shewmr4_2649	SSF52218	Flavoproteins
Shewmr4_2650	SSF55120	Pseudouridine synthase
Shewmr4_2651	SSF158452	YqcC-like
Shewmr4_2655	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2661	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Shewmr4_2664	SSF56214	4'-phosphopantetheinyl transferase
Shewmr4_2666	SSF47336	ACP-like
Shewmr4_2666	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2666	SSF52151	FabD/lysophospholipase-like
Shewmr4_2666	SSF53901	Thiolase-like
Shewmr4_2666	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
Shewmr4_2667	SSF52151	FabD/lysophospholipase-like
Shewmr4_2668	SSF53901	Thiolase-like
Shewmr4_2668	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2669	SSF51395	FMN-linked oxidoreductases
Shewmr4_2673	SSF111331	NAD kinase/diacylglycerol kinase-like
Shewmr4_2673	SSF52799	(Phosphotyrosine protein) phosphatases II
Shewmr4_2674	SSF46689	Homeodomain-like
Shewmr4_2674	SSF52172	CheY-like
Shewmr4_2674	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2677	SSF159238	SO1590-like
Shewmr4_2679	SSF53254	Phosphoglycerate mutase-like
Shewmr4_2680	SSF53254	Phosphoglycerate mutase-like
Shewmr4_2681	SSF56935	Porins
Shewmr4_2682	SSF103473	MFS general substrate transporter
Shewmr4_2683	SSF53850	Periplasmic binding protein-like II
Shewmr4_2684	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_2684	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2685	SSF46689	Homeodomain-like
Shewmr4_2685	SSF52172	CheY-like
Shewmr4_2685	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2688	SSF51206	cAMP-binding domain-like
Shewmr4_2689	SSF56529	FAH
Shewmr4_2690	SSF53187	Zn-dependent exopeptidases
Shewmr4_2691	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2692	SSF82057	Prokaryotic SH3-related domain
Shewmr4_2694	SSF46689	Homeodomain-like
Shewmr4_2694	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_2695	SSF47616	GST C-terminal domain-like
Shewmr4_2695	SSF52833	Thioredoxin-like
Shewmr4_2696	SSF47616	GST C-terminal domain-like
Shewmr4_2696	SSF52833	Thioredoxin-like
Shewmr4_2697	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2699	SSF160104	Acetoacetate decarboxylase-like
Shewmr4_2699	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2700	SSF55073	Nucleotide cyclase
Shewmr4_2701	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_2703	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2704	SSF158791	MgtE N-terminal domain-like
Shewmr4_2704	SSF161093	MgtE membrane domain-like
Shewmr4_2704	SSF54631	CBS-domain pair
Shewmr4_2705	SSF52833	Thioredoxin-like
Shewmr4_2706	SSF48371	ARM repeat
Shewmr4_2706	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2706	SSF63737	Leukotriene A4 hydrolase N-terminal domain
Shewmr4_2707	SSF53850	Periplasmic binding protein-like II
Shewmr4_2708	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_2708	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2708	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_2709	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_2709	SSF52172	CheY-like
Shewmr4_2710	SSF56935	Porins
Shewmr4_2712	SSF50156	PDZ domain-like
Shewmr4_2713	SSF48452	TPR-like
Shewmr4_2714	SSF55073	Nucleotide cyclase
Shewmr4_2715	SSF102405	MCP/YpsA-like
Shewmr4_2716	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Shewmr4_2716	SSF88723	PIN domain-like
Shewmr4_2718	SSF56112	Protein kinase-like (PK-like)
Shewmr4_2719	SSF53474	alpha/beta-Hydrolases
Shewmr4_2719	SSF82171	DPP6 N-terminal domain-like
Shewmr4_2720	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_2721	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2723	SSF53474	alpha/beta-Hydrolases
Shewmr4_2724	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2724	SSF53850	Periplasmic binding protein-like II
Shewmr4_2726	SSF143437	THUMP domain-like
Shewmr4_2726	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_2726	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_2727	SSF103088	OmpA-like
Shewmr4_2729	SSF116842	XseB-like
Shewmr4_2730	SSF48576	Terpenoid synthases
Shewmr4_2731	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_2731	SSF52922	TK C-terminal domain-like
Shewmr4_2732	SSF51064	Head domain of nucleotide exchange factor GrpE
Shewmr4_2732	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
Shewmr4_2733	SSF111331	NAD kinase/diacylglycerol kinase-like
Shewmr4_2735	SSF46548	alpha-helical ferredoxin
Shewmr4_2735	SSF55103	FAD-linked oxidases, C-terminal domain
Shewmr4_2735	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_2737	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2737	SSF46548	alpha-helical ferredoxin
Shewmr4_2738	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_2739	SSF54909	Dimeric alpha+beta barrel
Shewmr4_2742	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_2743	SSF111369	HlyD-like secretion proteins
Shewmr4_2745	SSF81324	Voltage-gated potassium channels
Shewmr4_2748	SSF103473	MFS general substrate transporter
Shewmr4_2750	SSF53850	Periplasmic binding protein-like II
Shewmr4_2751	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2752	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2753	SSF141868	EAL domain-like
Shewmr4_2753	SSF55073	Nucleotide cyclase
Shewmr4_2753	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2754	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_2755	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_2755	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_2756	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_2757	SSF51011	Glycosyl hydrolase domain
Shewmr4_2757	SSF51445	(Trans)glycosidases
Shewmr4_2757	SSF81296	E set domains
Shewmr4_2758	SSF51011	Glycosyl hydrolase domain
Shewmr4_2758	SSF51445	(Trans)glycosidases
Shewmr4_2758	SSF81296	E set domains
Shewmr4_2759	SSF51445	(Trans)glycosidases
Shewmr4_2760	SSF50891	Cyclophilin-like
Shewmr4_2761	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2762	SSF56796	Dehydroquinate synthase-like
Shewmr4_2765	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2766	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_2767	SSF51645	Malate synthase G
Shewmr4_2768	SSF56935	Porins
Shewmr4_2769	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2770	SSF48452	TPR-like
Shewmr4_2770	SSF55073	Nucleotide cyclase
Shewmr4_2771	SSF48076	LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Shewmr4_2772	SSF53790	Tetrapyrrole methylase
Shewmr4_2774	SSF54285	MoaD/ThiS
Shewmr4_2775	SSF55961	Bet v1-like
Shewmr4_2776	SSF74982	Small protein B (SmpB)
Shewmr4_2777	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_2778	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2779	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2780	SSF46955	Putative DNA-binding domain
Shewmr4_2781	SSF53041	Resolvase-like
Shewmr4_2782	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_2786	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Shewmr4_2788	SSF55008	HMA, heavy metal-associated domain
Shewmr4_2790	SSF54001	Cysteine proteinases
Shewmr4_2792	SSF55298	YjgF-like
Shewmr4_2795	SSF50985	RCC1/BLIP-II
Shewmr4_2797	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_2798	SSF53927	Cytidine deaminase-like
Shewmr4_2801	SSF46689	Homeodomain-like
Shewmr4_2801	SSF48498	Tetracyclin repressor-like, C-terminal domain
Shewmr4_2804	SSF54534	FKBP-like
Shewmr4_2805	SSF51055	Carbohydrate binding domain
Shewmr4_2805	SSF51445	(Trans)glycosidases
Shewmr4_2805	SSF54556	Chitinase insertion domain
Shewmr4_2805	SSF81296	E set domains
Shewmr4_2806	SSF53067	Actin-like ATPase domain
Shewmr4_2807	SSF53092	Creatinase/prolidase N-terminal domain
Shewmr4_2807	SSF55920	Creatinase/aminopeptidase
Shewmr4_2808	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_2808	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2809	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2811	SSF52833	Thioredoxin-like
Shewmr4_2813	SSF53850	Periplasmic binding protein-like II
Shewmr4_2815	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_2816	SSF117892	Band 7/SPFH domain
Shewmr4_2818	SSF75169	DsrEFH-like
Shewmr4_2819	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_2820	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_2827	SSF52949	Macro domain-like
Shewmr4_2827	SSF53187	Zn-dependent exopeptidases
Shewmr4_2828	SSF48600	Chorismate mutase II
Shewmr4_2828	SSF51569	Aldolase
Shewmr4_2828	SSF53850	Periplasmic binding protein-like II
Shewmr4_2828	SSF55021	ACT-like
Shewmr4_2831	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_2831	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_2831	SSF63380	Riboflavin synthase domain-like
Shewmr4_2832	SSF56821	Prismane protein-like
Shewmr4_2833	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_2833	SSF48600	Chorismate mutase II
Shewmr4_2833	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_2834	SSF51569	Aldolase
Shewmr4_2835	SSF50104	Translation proteins SH3-like domain
Shewmr4_2836	SSF75217	alpha/beta knot
Shewmr4_2837	SSF50346	PRC-barrel domain
Shewmr4_2837	SSF50447	Translation proteins
Shewmr4_2838	SSF54565	Ribosomal protein S16
Shewmr4_2839	SSF47446	Signal peptide-binding domain
Shewmr4_2839	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2841	SSF54631	CBS-domain pair
Shewmr4_2841	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_2843	SSF143422	Transposase IS200-like
Shewmr4_2844	SSF56214	4'-phosphopantetheinyl transferase
Shewmr4_2845	SSF63892	Pyridoxine 5'-phosphate synthase
Shewmr4_2846	SSF50249	Nucleic acid-binding proteins
Shewmr4_2847	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2847	SSF54814	Prokaryotic type KH domain (KH-domain type II)
Shewmr4_2848	SSF54768	dsRNA-binding domain-like
Shewmr4_2848	SSF69065	RNase III domain-like
Shewmr4_2849	SSF51306	LexA/Signal peptidase
Shewmr4_2850	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2850	SSF54980	EF-G C-terminal domain-like
Shewmr4_2853	SSF89069	N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Shewmr4_2854	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_2854	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_2855	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Shewmr4_2855	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2855	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Shewmr4_2857	SSF109910	YgfY-like
Shewmr4_2858	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2858	SSF53850	Periplasmic binding protein-like II
Shewmr4_2861	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
Shewmr4_2864	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
Shewmr4_2864	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_2864	SSF52009	Phosphohistidine domain
Shewmr4_2864	SSF55781	GAF domain-like
Shewmr4_2865	SSF55811	Nudix
Shewmr4_2866	SSF52980	Restriction endonuclease-like
Shewmr4_2867	SSF55073	Nucleotide cyclase
Shewmr4_2868	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2868	SSF53850	Periplasmic binding protein-like II
Shewmr4_2869	SSF47226	Histidine-containing phosphotransfer domain, HPT domain
Shewmr4_2870	SSF102114	Radical SAM enzymes
Shewmr4_2872	SSF51395	FMN-linked oxidoreductases
Shewmr4_2872	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_2872	SSF69336	Alpha subunit of glutamate synthase, C-terminal domain
Shewmr4_2873	SSF46548	alpha-helical ferredoxin
Shewmr4_2873	SSF51971	Nucleotide-binding domain
Shewmr4_2874	SSF53167	Purine and uridine phosphorylases
Shewmr4_2878	SSF54427	NTF2-like
Shewmr4_2880	SSF52374	Nucleotidylyl transferase
Shewmr4_2880	SSF55174	Alpha-L RNA-binding motif
Shewmr4_2881	SSF51261	Duplicated hybrid motif
Shewmr4_2882	SSF53067	Actin-like ATPase domain
Shewmr4_2883	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_2883	SSF82171	DPP6 N-terminal domain-like
Shewmr4_2884	SSF53474	alpha/beta-Hydrolases
Shewmr4_2884	SSF82171	DPP6 N-terminal domain-like
Shewmr4_2885	SSF56935	Porins
Shewmr4_2886	SSF81338	Aquaporin-like
Shewmr4_2889	SSF89360	HesB-like domain
Shewmr4_2891	SSF81340	Clc chloride channel
Shewmr4_2892	SSF53671	Aspartate/ornithine carbamoyltransferase
Shewmr4_2893	SSF53383	PLP-dependent transferases
Shewmr4_2896	SSF47090	PGBD-like
Shewmr4_2896	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2897	SSF81301	Nucleotidyltransferase
Shewmr4_2897	SSF81891	Poly A polymerase C-terminal region-like
Shewmr4_2898	SSF58042	Outer membrane lipoprotein
Shewmr4_2899	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_2901	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Shewmr4_2902	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Shewmr4_2904	SSF53067	Actin-like ATPase domain
Shewmr4_2906	SSF89095	GatB/YqeY motif
Shewmr4_2907	SSF117023	DNA primase DnaG, C-terminal domain
Shewmr4_2907	SSF56731	DNA primase core
Shewmr4_2907	SSF57783	Zinc beta-ribbon
Shewmr4_2908	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_2908	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_2909	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2910	SSF103473	MFS general substrate transporter
Shewmr4_2911	SSF51679	Bacterial luciferase-like
Shewmr4_2912	SSF53383	PLP-dependent transferases
Shewmr4_2913	SSF53720	ALDH-like
Shewmr4_2914	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2915	SSF161098	MetI-like
Shewmr4_2916	SSF161098	MetI-like
Shewmr4_2917	SSF50331	MOP-like
Shewmr4_2917	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2918	SSF53850	Periplasmic binding protein-like II
Shewmr4_2919	SSF54368	Glutamine synthetase, N-terminal domain
Shewmr4_2919	SSF55931	Glutamine synthetase/guanido kinase
Shewmr4_2920	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_2921	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_2921	SSF51182	RmlC-like cupins
Shewmr4_2922	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2924	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_2925	SSF50685	Barwin-like endoglucanases
Shewmr4_2926	SSF53720	ALDH-like
Shewmr4_2927	SSF53383	PLP-dependent transferases
Shewmr4_2928	SSF53720	ALDH-like
Shewmr4_2929	SSF51182	RmlC-like cupins
Shewmr4_2930	SSF56935	Porins
Shewmr4_2931	SSF103473	MFS general substrate transporter
Shewmr4_2933	SSF51338	Composite domain of metallo-dependent hydrolases
Shewmr4_2933	SSF51556	Metallo-dependent hydrolases
Shewmr4_2934	SSF53697	SIS domain
Shewmr4_2935	SSF53067	Actin-like ATPase domain
Shewmr4_2936	SSF49384	Carbohydrate-binding domain
Shewmr4_2936	SSF51445	(Trans)glycosidases
Shewmr4_2936	SSF55545	beta-N-acetylhexosaminidase-like domain
Shewmr4_2936	SSF81296	E set domains
Shewmr4_2937	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2938	SSF53850	Periplasmic binding protein-like II
Shewmr4_2941	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2942	SSF56935	Porins
Shewmr4_2943	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_2943	SSF53822	Periplasmic binding protein-like I
Shewmr4_2944	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_2945	SSF54913	GlnB-like
Shewmr4_2946	SSF54523	Pili subunits
Shewmr4_2947	SSF54523	Pili subunits
Shewmr4_2949	SSF54523	Pili subunits
Shewmr4_2950	SSF50998	Quinoprotein alcohol dehydrogenase-like
Shewmr4_2950	SSF53300	vWA-like
Shewmr4_2955	SSF54534	FKBP-like
Shewmr4_2957	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_2957	SSF50677	ValRS/IleRS/LeuRS editing domain
Shewmr4_2957	SSF52374	Nucleotidylyl transferase
Shewmr4_2958	SSF52374	Nucleotidylyl transferase
Shewmr4_2958	SSF82114	Riboflavin kinase-like
Shewmr4_2960	SSF46992	Ribosomal protein S20
Shewmr4_2961	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2962	SSF53187	Zn-dependent exopeptidases
Shewmr4_2965	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_2966	SSF103088	OmpA-like
Shewmr4_2966	SSF103647	TSP type-3 repeat
Shewmr4_2966	SSF56925	OMPA-like
Shewmr4_2967	SSF51569	Aldolase
Shewmr4_2968	SSF53697	SIS domain
Shewmr4_2972	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_2972	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_2973	SSF53300	vWA-like
Shewmr4_2974	SSF52091	SpoIIaa-like
Shewmr4_2975	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Shewmr4_2976	SSF51246	Rudiment single hybrid motif
Shewmr4_2976	SSF52440	PreATP-grasp domain
Shewmr4_2976	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_2977	SSF55073	Nucleotide cyclase
Shewmr4_2977	SSF55781	GAF domain-like
Shewmr4_2978	SSF53955	Lysozyme-like
Shewmr4_2980	SSF55931	Glutamine synthetase/guanido kinase
Shewmr4_2981	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_2983	SSF118215	Proton glutamate symport protein
Shewmr4_2986	SSF51230	Single hybrid motif
Shewmr4_2986	SSF51569	Aldolase
Shewmr4_2986	SSF89000	post-HMGL domain-like
Shewmr4_2991	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_2991	SSF81923	Double Clp-N motif
Shewmr4_2992	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
Shewmr4_2993	SSF55120	Pseudouridine synthase
Shewmr4_2993	SSF55174	Alpha-L RNA-binding motif
Shewmr4_2994	SSF48452	TPR-like
Shewmr4_2995	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_2996	SSF46458	Globin-like
Shewmr4_2996	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_2996	SSF63380	Riboflavin synthase domain-like
Shewmr4_2997	SSF55120	Pseudouridine synthase
Shewmr4_2997	SSF55174	Alpha-L RNA-binding motif
Shewmr4_2998	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_2999	SSF52218	Flavoproteins
Shewmr4_3000	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_3006	SSF52172	CheY-like
Shewmr4_3007	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3007	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3010	SSF143422	Transposase IS200-like
Shewmr4_3011	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
Shewmr4_3012	SSF53850	Periplasmic binding protein-like II
Shewmr4_3013	SSF161098	MetI-like
Shewmr4_3014	SSF161098	MetI-like
Shewmr4_3015	SSF50331	MOP-like
Shewmr4_3015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3016	SSF111369	HlyD-like secretion proteins
Shewmr4_3019	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3020	SSF51246	Rudiment single hybrid motif
Shewmr4_3020	SSF52440	PreATP-grasp domain
Shewmr4_3020	SSF56059	Glutathione synthetase ATP-binding domain-like
Shewmr4_3022	SSF48452	TPR-like
Shewmr4_3025	SSF50494	Trypsin-like serine proteases
Shewmr4_3027	SSF81296	E set domains
Shewmr4_3029	SSF56634	Heme-dependent catalase-like
Shewmr4_3031	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_3033	SSF56219	DNase I-like
Shewmr4_3033	SSF74853	Lamin A/C globular tail domain
Shewmr4_3034	SSF54534	FKBP-like
Shewmr4_3035	SSF50998	Quinoprotein alcohol dehydrogenase-like
Shewmr4_3037	SSF56420	Peptide deformylase
Shewmr4_3038	SSF48452	TPR-like
Shewmr4_3040	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_3040	SSF63737	Leukotriene A4 hydrolase N-terminal domain
Shewmr4_3041	SSF141868	EAL domain-like
Shewmr4_3042	SSF103190	Sensory domain-like
Shewmr4_3042	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3043	SSF55073	Nucleotide cyclase
Shewmr4_3043	SSF55781	GAF domain-like
Shewmr4_3043	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3044	SSF117396	TM1631-like
Shewmr4_3046	SSF74650	Galactose mutarotase-like
Shewmr4_3046	SSF81296	E set domains
Shewmr4_3048	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_3051	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3051	SSF53850	Periplasmic binding protein-like II
Shewmr4_3053	SSF53850	Periplasmic binding protein-like II
Shewmr4_3054	SSF161098	MetI-like
Shewmr4_3055	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3056	SSF51316	Mss4-like
Shewmr4_3060	SSF55718	SCP-like
Shewmr4_3060	SSF56281	Metallo-hydrolase/oxidoreductase
Shewmr4_3061	SSF55469	FMN-dependent nitroreductase-like
Shewmr4_3062	SSF46565	Chaperone J-domain
Shewmr4_3063	SSF52833	Thioredoxin-like
Shewmr4_3065	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_3066	SSF52218	Flavoproteins
Shewmr4_3067	SSF103473	MFS general substrate transporter
Shewmr4_3069	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3070	SSF116726	TrkA C-terminal domain-like
Shewmr4_3071	SSF50447	Translation proteins
Shewmr4_3071	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Shewmr4_3071	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3072	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_3073	SSF53790	Tetrapyrrole methylase
Shewmr4_3074	SSF56931	Outer membrane phospholipase A (OMPLA)
Shewmr4_3075	SSF52096	ClpP/crotonase
Shewmr4_3077	SSF53955	Lysozyme-like
Shewmr4_3078	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_3079	SSF55124	Nitrite/Sulfite reductase N-terminal domain-like
Shewmr4_3079	SSF56014	Nitrite and sulphite reductase 4Fe-4S domain-like
Shewmr4_3080	SSF52218	Flavoproteins
Shewmr4_3080	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_3080	SSF63380	Riboflavin synthase domain-like
Shewmr4_3081	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3081	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
Shewmr4_3082	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_3084	SSF46689	Homeodomain-like
Shewmr4_3086	SSF52374	Nucleotidylyl transferase
Shewmr4_3086	SSF53613	Ribokinase-like
Shewmr4_3088	SSF116726	TrkA C-terminal domain-like
Shewmr4_3088	SSF56176	FAD-binding/transporter-associated domain-like
Shewmr4_3089	SSF81442	Cytochrome c oxidase subunit I-like
Shewmr4_3090	SSF46689	Homeodomain-like
Shewmr4_3090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3090	SSF55781	GAF domain-like
Shewmr4_3091	SSF141523	L,D-transpeptidase catalytic domain-like
Shewmr4_3092	SSF53187	Zn-dependent exopeptidases
Shewmr4_3093	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_3094	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_3095	SSF52172	CheY-like
Shewmr4_3096	SSF103190	Sensory domain-like
Shewmr4_3096	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3096	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3096	SSF55890	Sporulation response regulatory protein Spo0B
Shewmr4_3099	SSF53850	Periplasmic binding protein-like II
Shewmr4_3100	SSF56935	Porins
Shewmr4_3102	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3103	SSF46955	Putative DNA-binding domain
Shewmr4_3104	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3106	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3106	SSF53850	Periplasmic binding protein-like II
Shewmr4_3108	SSF55073	Nucleotide cyclase
Shewmr4_3108	SSF55781	GAF domain-like
Shewmr4_3109	SSF81301	Nucleotidyltransferase
Shewmr4_3109	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
Shewmr4_3112	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3117	SSF81324	Voltage-gated potassium channels
Shewmr4_3118	SSF55154	CYTH-like phosphatases
Shewmr4_3119	SSF109755	PhoU-like
Shewmr4_3122	SSF51730	FAD-linked oxidoreductase
Shewmr4_3122	SSF53720	ALDH-like
Shewmr4_3122	SSF81935	N-terminal domain of bifunctional PutA protein
Shewmr4_3124	SSF46955	Putative DNA-binding domain
Shewmr4_3125	SSF55154	CYTH-like phosphatases
Shewmr4_3126	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3126	SSF90123	ABC transporter transmembrane region
Shewmr4_3127	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3127	SSF90123	ABC transporter transmembrane region
Shewmr4_3129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3130	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3131	SSF53383	PLP-dependent transferases
Shewmr4_3132	SSF82649	SufE/NifU
Shewmr4_3133	SSF51556	Metallo-dependent hydrolases
Shewmr4_3134	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3135	SSF51182	RmlC-like cupins
Shewmr4_3136	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Shewmr4_3137	SSF50729	PH domain-like
Shewmr4_3139	SSF55120	Pseudouridine synthase
Shewmr4_3140	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3140	SSF54909	Dimeric alpha+beta barrel
Shewmr4_3141	SSF52025	PA domain
Shewmr4_3141	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_3144	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3145	SSF53271	PRTase-like
Shewmr4_3146	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Shewmr4_3147	SSF51984	MurCD N-terminal domain
Shewmr4_3147	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_3147	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_3151	SSF56925	OMPA-like
Shewmr4_3153	SSF50891	Cyclophilin-like
Shewmr4_3155	SSF103473	MFS general substrate transporter
Shewmr4_3156	SSF89963	YajQ-like
Shewmr4_3158	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_3158	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3159	SSF54913	GlnB-like
Shewmr4_3160	SSF111352	Ammonium transporter
Shewmr4_3161	SSF141868	EAL domain-like
Shewmr4_3162	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_3163	SSF51569	Aldolase
Shewmr4_3165	SSF48452	TPR-like
Shewmr4_3167	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_3168	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3169	SSF75620	Release factor
Shewmr4_3170	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3170	SSF69075	Glutamyl tRNA-reductase dimerization domain
Shewmr4_3170	SSF69742	Glutamyl tRNA-reductase catalytic, N-terminal domain
Shewmr4_3171	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
Shewmr4_3172	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3172	SSF55060	GHMP Kinase, C-terminal domain
Shewmr4_3173	SSF53271	PRTase-like
Shewmr4_3174	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3175	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_3175	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_3178	SSF55120	Pseudouridine synthase
Shewmr4_3178	SSF55174	Alpha-L RNA-binding motif
Shewmr4_3179	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_3180	SSF81301	Nucleotidyltransferase
Shewmr4_3181	SSF160631	SMI1/KNR4-like
Shewmr4_3182	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_3183	SSF47616	GST C-terminal domain-like
Shewmr4_3183	SSF52833	Thioredoxin-like
Shewmr4_3184	SSF56935	Porins
Shewmr4_3188	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3188	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_3189	SSF158675	Sama2622-like
Shewmr4_3190	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Shewmr4_3191	SSF48452	TPR-like
Shewmr4_3191	SSF55073	Nucleotide cyclase
Shewmr4_3192	SSF53850	Periplasmic binding protein-like II
Shewmr4_3193	SSF46548	alpha-helical ferredoxin
Shewmr4_3194	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3194	SSF50331	MOP-like
Shewmr4_3195	SSF53850	Periplasmic binding protein-like II
Shewmr4_3196	SSF161098	MetI-like
Shewmr4_3197	SSF50331	MOP-like
Shewmr4_3197	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3198	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_3201	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_3202	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3204	SSF53098	Ribonuclease H-like
Shewmr4_3206	SSF158682	TerB-like
Shewmr4_3208	SSF103642	Sec-C motif
Shewmr4_3208	SSF81901	HCP-like
Shewmr4_3209	SSF52129	Caspase-like
Shewmr4_3209	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3210	SSF56672	DNA/RNA polymerases
Shewmr4_3218	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_3219	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3222	SSF160113	YegP-like
Shewmr4_3223	SSF47188	Hemerythrin-like
Shewmr4_3223	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3225	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3225	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3226	SSF69572	Activating enzymes of the ubiquitin-like proteins
Shewmr4_3227	SSF56935	Porins
Shewmr4_3228	SSF56935	Porins
Shewmr4_3229	SSF101904	GyrA/ParC C-terminal domain-like
Shewmr4_3229	SSF56719	Type II DNA topoisomerase
Shewmr4_3230	SSF50952	Soluble quinoprotein glucose dehydrogenase
Shewmr4_3231	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3231	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3231	SSF56719	Type II DNA topoisomerase
Shewmr4_3232	SSF53474	alpha/beta-Hydrolases
Shewmr4_3233	SSF56300	Metallo-dependent phosphatases
Shewmr4_3235	SSF55811	Nudix
Shewmr4_3236	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_3239	SSF110087	DR1885-like metal-binding protein
Shewmr4_3240	SSF52096	ClpP/crotonase
Shewmr4_3243	SSF51395	FMN-linked oxidoreductases
Shewmr4_3244	SSF51197	Clavaminate synthase-like
Shewmr4_3245	SSF56935	Porins
Shewmr4_3246	SSF103039	CheC-like
Shewmr4_3247	SSF50621	Alanine racemase C-terminal domain-like
Shewmr4_3247	SSF51419	PLP-binding barrel
Shewmr4_3248	SSF48024	N-terminal domain of DnaB helicase
Shewmr4_3248	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3249	SSF50494	Trypsin-like serine proteases
Shewmr4_3250	SSF53920	Fe-only hydrogenase
Shewmr4_3250	SSF54862	4Fe-4S ferredoxins
Shewmr4_3251	SSF48674	Fe-only hydrogenase smaller subunit
Shewmr4_3252	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_3253	SSF102114	Radical SAM enzymes
Shewmr4_3255	SSF102114	Radical SAM enzymes
Shewmr4_3256	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3257	SSF55653	Ribosomal protein L9 C-domain
Shewmr4_3257	SSF55658	L9 N-domain-like
Shewmr4_3258	SSF46911	Ribosomal protein S18
Shewmr4_3259	SSF50249	Nucleic acid-binding proteins
Shewmr4_3260	SSF54995	Ribosomal protein S6
Shewmr4_3262	SSF103473	MFS general substrate transporter
Shewmr4_3263	SSF55315	L30e-like
Shewmr4_3263	SSF75217	alpha/beta knot
Shewmr4_3264	SSF50249	Nucleic acid-binding proteins
Shewmr4_3265	SSF81901	HCP-like
Shewmr4_3266	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3268	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3269	SSF52161	Ribosomal protein L13
Shewmr4_3270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3271	SSF50156	PDZ domain-like
Shewmr4_3271	SSF50494	Trypsin-like serine proteases
Shewmr4_3272	SSF50156	PDZ domain-like
Shewmr4_3272	SSF50494	Trypsin-like serine proteases
Shewmr4_3273	SSF63848	Cell-division inhibitor MinC, C-terminal domain
Shewmr4_3277	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3277	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3278	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3278	SSF52172	CheY-like
Shewmr4_3281	SSF53474	alpha/beta-Hydrolases
Shewmr4_3282	SSF56935	Porins
Shewmr4_3283	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3283	SSF52172	CheY-like
Shewmr4_3284	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3284	SSF52172	CheY-like
Shewmr4_3284	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3284	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3285	SSF103473	MFS general substrate transporter
Shewmr4_3286	SSF53474	alpha/beta-Hydrolases
Shewmr4_3287	SSF75304	Amidase signature (AS) enzymes
Shewmr4_3288	SSF55909	Pentein
Shewmr4_3289	SSF103647	TSP type-3 repeat
Shewmr4_3289	SSF53474	alpha/beta-Hydrolases
Shewmr4_3290	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3291	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_3292	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_3296	SSF54523	Pili subunits
Shewmr4_3299	SSF51726	UROD/MetE-like
Shewmr4_3300	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3300	SSF53850	Periplasmic binding protein-like II
Shewmr4_3301	SSF109604	HD-domain/PDEase-like
Shewmr4_3302	SSF56935	Porins
Shewmr4_3304	SSF50985	RCC1/BLIP-II
Shewmr4_3306	SSF53590	Nucleoside hydrolase
Shewmr4_3307	SSF53613	Ribokinase-like
Shewmr4_3308	SSF49503	Cupredoxins
Shewmr4_3310	SSF51695	PLC-like phosphodiesterases
Shewmr4_3311	SSF53271	PRTase-like
Shewmr4_3312	SSF56300	Metallo-dependent phosphatases
Shewmr4_3313	SSF54631	CBS-domain pair
Shewmr4_3316	SSF53474	alpha/beta-Hydrolases
Shewmr4_3317	SSF51182	RmlC-like cupins
Shewmr4_3318	SSF56935	Porins
Shewmr4_3319	SSF52833	Thioredoxin-like
Shewmr4_3320	SSF55073	Nucleotide cyclase
Shewmr4_3321	SSF82784	OsmC-like
Shewmr4_3323	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3328	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3329	SSF53383	PLP-dependent transferases
Shewmr4_3330	SSF51230	Single hybrid motif
Shewmr4_3331	SSF101790	Aminomethyltransferase beta-barrel domain
Shewmr4_3331	SSF103025	Folate-binding domain
Shewmr4_3332	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_3333	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_3334	SSF101327	YgfB-like
Shewmr4_3335	SSF102829	Cell division protein ZapA-like
Shewmr4_3336	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_3337	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3339	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3339	SSF56327	LDH C-terminal domain-like
Shewmr4_3340	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3340	SSF55252	C-terminal domain of arginine repressor
Shewmr4_3341	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3342	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3342	SSF53850	Periplasmic binding protein-like II
Shewmr4_3343	SSF54909	Dimeric alpha+beta barrel
Shewmr4_3344	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_3345	SSF50331	MOP-like
Shewmr4_3345	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3346	SSF161098	MetI-like
Shewmr4_3347	SSF53850	Periplasmic binding protein-like II
Shewmr4_3349	SSF52833	Thioredoxin-like
Shewmr4_3350	SSF52343	Ferredoxin reductase-like, C-terminal NADP-linked domain
Shewmr4_3350	SSF63380	Riboflavin synthase domain-like
Shewmr4_3352	SSF53254	Phosphoglycerate mutase-like
Shewmr4_3353	SSF51395	FMN-linked oxidoreductases
Shewmr4_3356	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3356	SSF90123	ABC transporter transmembrane region
Shewmr4_3358	SSF51569	Aldolase
Shewmr4_3359	SSF48452	TPR-like
Shewmr4_3361	SSF111352	Ammonium transporter
Shewmr4_3362	SSF54913	GlnB-like
Shewmr4_3363	SSF52499	Isochorismatase-like hydrolases
Shewmr4_3367	SSF46689	Homeodomain-like
Shewmr4_3367	SSF51215	Regulatory protein AraC
Shewmr4_3369	SSF53649	Alkaline phosphatase-like
Shewmr4_3370	SSF53649	Alkaline phosphatase-like
Shewmr4_3371	SSF53850	Periplasmic binding protein-like II
Shewmr4_3372	SSF55073	Nucleotide cyclase
Shewmr4_3372	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3373	SSF50249	Nucleic acid-binding proteins
Shewmr4_3374	SSF52743	Subtilisin-like
Shewmr4_3375	SSF52833	Thioredoxin-like
Shewmr4_3377	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3379	SSF48113	Heme-dependent peroxidases
Shewmr4_3382	SSF69118	AhpD-like
Shewmr4_3383	SSF56784	HAD-like
Shewmr4_3385	SSF53300	vWA-like
Shewmr4_3386	SSF53300	vWA-like
Shewmr4_3388	SSF53300	vWA-like
Shewmr4_3389	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3390	SSF102114	Radical SAM enzymes
Shewmr4_3391	SSF53649	Alkaline phosphatase-like
Shewmr4_3392	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3392	SSF53850	Periplasmic binding protein-like II
Shewmr4_3393	SSF53300	vWA-like
Shewmr4_3396	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_3397	SSF48592	GroEL equatorial domain-like
Shewmr4_3397	SSF52029	GroEL apical domain-like
Shewmr4_3397	SSF54849	GroEL-intermediate domain like
Shewmr4_3398	SSF50129	GroES-like
Shewmr4_3400	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3400	SSF53850	Periplasmic binding protein-like II
Shewmr4_3401	SSF111369	HlyD-like secretion proteins
Shewmr4_3402	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_3402	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_3402	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_3405	SSF54913	GlnB-like
Shewmr4_3406	SSF52833	Thioredoxin-like
Shewmr4_3406	SSF74863	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
Shewmr4_3407	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3408	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3408	SSF55060	GHMP Kinase, C-terminal domain
Shewmr4_3409	SSF74650	Galactose mutarotase-like
Shewmr4_3411	SSF50129	GroES-like
Shewmr4_3411	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3412	SSF81901	HCP-like
Shewmr4_3413	SSF52058	L domain-like
Shewmr4_3413	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3414	SSF53955	Lysozyme-like
Shewmr4_3414	SSF54106	LysM domain
Shewmr4_3416	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3417	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_3419	SSF50249	Nucleic acid-binding proteins
Shewmr4_3420	SSF103473	MFS general substrate transporter
Shewmr4_3421	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3423	SSF53187	Zn-dependent exopeptidases
Shewmr4_3424	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3426	SSF56784	HAD-like
Shewmr4_3427	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_3428	SSF56529	FAH
Shewmr4_3429	SSF74653	TolA/TonB C-terminal domain
Shewmr4_3431	SSF46626	Cytochrome c
Shewmr4_3432	SSF46626	Cytochrome c
Shewmr4_3434	SSF111369	HlyD-like secretion proteins
Shewmr4_3435	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3437	SSF51730	FAD-linked oxidoreductase
Shewmr4_3438	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3438	SSF53633	Carbamate kinase-like
Shewmr4_3438	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_3439	SSF53383	PLP-dependent transferases
Shewmr4_3440	SSF47598	Ribbon-helix-helix
Shewmr4_3443	SSF54862	4Fe-4S ferredoxins
Shewmr4_3444	SSF50692	ADC-like
Shewmr4_3444	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_3445	SSF141571	Pentapeptide repeat-like
Shewmr4_3447	SSF56104	SAICAR synthase-like
Shewmr4_3448	SSF56219	DNase I-like
Shewmr4_3449	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3451	SSF102114	Radical SAM enzymes
Shewmr4_3453	SSF53850	Periplasmic binding protein-like II
Shewmr4_3454	SSF56935	Porins
Shewmr4_3455	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Shewmr4_3456	SSF158710	PSPTO4464-like
Shewmr4_3457	SSF49373	Invasin/intimin cell-adhesion fragments
Shewmr4_3459	SSF56925	OMPA-like
Shewmr4_3463	SSF111369	HlyD-like secretion proteins
Shewmr4_3464	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_3465	SSF111283	Putative modulator of DNA gyrase, PmbA/TldD
Shewmr4_3466	SSF56317	Carbon-nitrogen hydrolase
Shewmr4_3468	SSF50249	Nucleic acid-binding proteins
Shewmr4_3469	SSF52972	ITPase-like
Shewmr4_3472	SSF53067	Actin-like ATPase domain
Shewmr4_3473	SSF49899	Concanavalin A-like lectins/glucanases
Shewmr4_3475	SSF54523	Pili subunits
Shewmr4_3476	SSF54523	Pili subunits
Shewmr4_3477	SSF54523	Pili subunits
Shewmr4_3478	SSF54523	Pili subunits
Shewmr4_3479	SSF54523	Pili subunits
Shewmr4_3480	SSF54523	Pili subunits
Shewmr4_3483	SSF160246	EspE N-terminal domain-like
Shewmr4_3483	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3484	SSF48452	TPR-like
Shewmr4_3485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3490	SSF53067	Actin-like ATPase domain
Shewmr4_3491	SSF141868	EAL domain-like
Shewmr4_3491	SSF55073	Nucleotide cyclase
Shewmr4_3492	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3492	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
Shewmr4_3493	SSF143800	L28p-like
Shewmr4_3495	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3496	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Shewmr4_3496	SSF52374	Nucleotidylyl transferase
Shewmr4_3496	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Shewmr4_3497	SSF110997	Sporulation related repeat
Shewmr4_3499	SSF46689	Homeodomain-like
Shewmr4_3500	SSF69118	AhpD-like
Shewmr4_3501	SSF117892	Band 7/SPFH domain
Shewmr4_3502	SSF117892	Band 7/SPFH domain
Shewmr4_3504	SSF111364	Tsx-like channel
Shewmr4_3505	SSF53167	Purine and uridine phosphorylases
Shewmr4_3507	SSF50621	Alanine racemase C-terminal domain-like
Shewmr4_3507	SSF51419	PLP-binding barrel
Shewmr4_3509	SSF50182	Sm-like ribonucleoproteins
Shewmr4_3509	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
Shewmr4_3509	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
Shewmr4_3510	SSF81901	HCP-like
Shewmr4_3511	SSF46626	Cytochrome c
Shewmr4_3513	SSF48695	Multiheme cytochromes
Shewmr4_3515	SSF74653	TolA/TonB C-terminal domain
Shewmr4_3516	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3516	SSF53850	Periplasmic binding protein-like II
Shewmr4_3516	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3517	SSF52172	CheY-like
Shewmr4_3520	SSF54523	Pili subunits
Shewmr4_3521	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_3522	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3525	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3526	SSF48173	Cryptochrome/photolyase FAD-binding domain
Shewmr4_3527	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3529	SSF46689	Homeodomain-like
Shewmr4_3529	SSF52172	CheY-like
Shewmr4_3530	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3531	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3532	SSF56300	Metallo-dependent phosphatases
Shewmr4_3535	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3537	SSF55120	Pseudouridine synthase
Shewmr4_3538	SSF88697	PUA domain-like
Shewmr4_3539	SSF52151	FabD/lysophospholipase-like
Shewmr4_3540	SSF56935	Porins
Shewmr4_3541	SSF51197	Clavaminate synthase-like
Shewmr4_3542	SSF64182	DHH phosphoesterases
Shewmr4_3544	SSF74653	TolA/TonB C-terminal domain
Shewmr4_3545	SSF53474	alpha/beta-Hydrolases
Shewmr4_3546	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3547	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
Shewmr4_3549	SSF89562	RraA-like
Shewmr4_3550	SSF52768	Arginase/deacetylase
Shewmr4_3551	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3552	SSF55718	SCP-like
Shewmr4_3553	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3558	SSF51556	Metallo-dependent hydrolases
Shewmr4_3559	SSF55073	Nucleotide cyclase
Shewmr4_3560	SSF51569	Aldolase
Shewmr4_3562	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3562	SSF81767	Pre-protein crosslinking domain of SecA
Shewmr4_3562	SSF81886	Helical scaffold and wing domains of SecA
Shewmr4_3563	SSF51261	Duplicated hybrid motif
Shewmr4_3565	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3566	SSF52490	Tubulin nucleotide-binding domain-like
Shewmr4_3566	SSF55307	Tubulin C-terminal domain-like
Shewmr4_3567	SSF53067	Actin-like ATPase domain
Shewmr4_3569	SSF51984	MurCD N-terminal domain
Shewmr4_3569	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_3569	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_3570	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3572	SSF51984	MurCD N-terminal domain
Shewmr4_3572	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_3572	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_3574	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_3574	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_3574	SSF63418	MurE/MurF N-terminal domain
Shewmr4_3575	SSF53244	MurD-like peptide ligases, peptide-binding domain
Shewmr4_3575	SSF53623	MurD-like peptide ligases, catalytic domain
Shewmr4_3575	SSF63418	MurE/MurF N-terminal domain
Shewmr4_3576	SSF56519	Penicillin binding protein dimerisation domain
Shewmr4_3576	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_3578	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3578	SSF81799	Putative methyltransferase TM0872, insert domain
Shewmr4_3579	SSF89447	AbrB/MazE/MraZ-like
Shewmr4_3581	SSF54292	2Fe-2S ferredoxin-like
Shewmr4_3583	SSF53067	Actin-like ATPase domain
Shewmr4_3584	SSF56935	Porins
Shewmr4_3585	SSF52016	LeuD/IlvD-like
Shewmr4_3586	SSF53732	Aconitase iron-sulfur domain
Shewmr4_3587	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
Shewmr4_3588	SSF110921	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Shewmr4_3588	SSF51569	Aldolase
Shewmr4_3589	SSF48452	TPR-like
Shewmr4_3589	SSF55073	Nucleotide cyclase
Shewmr4_3590	SSF47819	HRDC-like
Shewmr4_3590	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3591	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_3592	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_3594	SSF53633	Carbamate kinase-like
Shewmr4_3594	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_3595	SSF57829	Zn-binding ribosomal proteins
Shewmr4_3596	SSF143800	L28p-like
Shewmr4_3597	SSF102712	JAB1/MPN domain
Shewmr4_3597	SSF47781	RuvA domain 2-like
Shewmr4_3598	SSF102645	CoaB-like
Shewmr4_3598	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Shewmr4_3599	SSF51283	dUTPase-like
Shewmr4_3600	SSF46689	Homeodomain-like
Shewmr4_3601	SSF53474	alpha/beta-Hydrolases
Shewmr4_3601	SSF82171	DPP6 N-terminal domain-like
Shewmr4_3602	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
Shewmr4_3603	SSF53271	PRTase-like
Shewmr4_3604	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3604	SSF55666	Ribonuclease PH domain 2-like
Shewmr4_3606	SSF56784	HAD-like
Shewmr4_3607	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3607	SSF53850	Periplasmic binding protein-like II
Shewmr4_3608	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3609	SSF103473	MFS general substrate transporter
Shewmr4_3610	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3611	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3613	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3614	SSF63562	RPB6/omega subunit-like
Shewmr4_3615	SSF109604	HD-domain/PDEase-like
Shewmr4_3615	SSF55021	ACT-like
Shewmr4_3615	SSF81271	TGS-like
Shewmr4_3615	SSF81301	Nucleotidyltransferase
Shewmr4_3616	SSF55298	YjgF-like
Shewmr4_3617	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_3619	SSF48452	TPR-like
Shewmr4_3620	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3621	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3621	SSF52172	CheY-like
Shewmr4_3622	SSF103032	Hypothetical protein YwqG
Shewmr4_3623	SSF103032	Hypothetical protein YwqG
Shewmr4_3624	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3624	SSF54211	Ribosomal protein S5 domain 2-like
Shewmr4_3625	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_3626	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_3628	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3628	SSF48008	GntR ligand-binding domain-like
Shewmr4_3629	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_3630	SSF48256	Citrate synthase
Shewmr4_3631	SSF52016	LeuD/IlvD-like
Shewmr4_3631	SSF53732	Aconitase iron-sulfur domain
Shewmr4_3632	SSF54506	Diaminopimelate epimerase-like
Shewmr4_3633	SSF141868	EAL domain-like
Shewmr4_3633	SSF50998	Quinoprotein alcohol dehydrogenase-like
Shewmr4_3633	SSF55073	Nucleotide cyclase
Shewmr4_3633	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3633	SSF63829	Calcium-dependent phosphotriesterase
Shewmr4_3634	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
Shewmr4_3635	SSF52833	Thioredoxin-like
Shewmr4_3636	SSF101744	Rof/RNase P subunit-like
Shewmr4_3638	SSF55298	YjgF-like
Shewmr4_3642	SSF52833	Thioredoxin-like
Shewmr4_3643	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3648	SSF75169	DsrEFH-like
Shewmr4_3657	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3657	SSF53850	Periplasmic binding protein-like II
Shewmr4_3658	SSF158442	DsbB-like
Shewmr4_3659	SSF50692	ADC-like
Shewmr4_3659	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_3660	SSF54862	4Fe-4S ferredoxins
Shewmr4_3661	SSF89155	TorD-like
Shewmr4_3662	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_3663	SSF56935	Porins
Shewmr4_3665	SSF49777	PEBP-like
Shewmr4_3667	SSF52172	CheY-like
Shewmr4_3667	SSF53383	PLP-dependent transferases
Shewmr4_3667	SSF55904	Ornithine decarboxylase C-terminal domain
Shewmr4_3669	SSF56935	Porins
Shewmr4_3670	SSF102114	Radical SAM enzymes
Shewmr4_3671	SSF161084	MAPEG domain-like
Shewmr4_3675	SSF48695	Multiheme cytochromes
Shewmr4_3676	SSF56935	Porins
Shewmr4_3677	SSF50692	ADC-like
Shewmr4_3677	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_3678	SSF54862	4Fe-4S ferredoxins
Shewmr4_3679	SSF89155	TorD-like
Shewmr4_3681	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3682	SSF56349	DNA breaking-rejoining enzymes
Shewmr4_3683	SSF53790	Tetrapyrrole methylase
Shewmr4_3684	SSF53822	Periplasmic binding protein-like I
Shewmr4_3685	SSF52980	Restriction endonuclease-like
Shewmr4_3686	SSF53697	SIS domain
Shewmr4_3688	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_3689	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3689	SSF53850	Periplasmic binding protein-like II
Shewmr4_3690	SSF52374	Nucleotidylyl transferase
Shewmr4_3691	SSF56784	HAD-like
Shewmr4_3692	SSF51366	Ribulose-phoshate binding barrel
Shewmr4_3695	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3696	SSF110997	Sporulation related repeat
Shewmr4_3696	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3697	SSF56796	Dehydroquinate synthase-like
Shewmr4_3698	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3703	SSF53067	Actin-like ATPase domain
Shewmr4_3704	SSF53955	Lysozyme-like
Shewmr4_3704	SSF56601	beta-lactamase/transpeptidase-like
Shewmr4_3705	SSF48557	L-aspartase-like
Shewmr4_3706	SSF52402	Adenine nucleotide alpha hydrolases-like
Shewmr4_3706	SSF69864	Argininosuccinate synthetase, C-terminal domain
Shewmr4_3707	SSF53671	Aspartate/ornithine carbamoyltransferase
Shewmr4_3708	SSF53633	Carbamate kinase-like
Shewmr4_3709	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3709	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Shewmr4_3710	SSF51621	Phosphoenolpyruvate/pyruvate domain
Shewmr4_3712	SSF142433	CinA-like
Shewmr4_3712	SSF53218	Molybdenum cofactor biosynthesis proteins
Shewmr4_3713	SSF53850	Periplasmic binding protein-like II
Shewmr4_3714	SSF53927	Cytidine deaminase-like
Shewmr4_3717	SSF54862	4Fe-4S ferredoxins
Shewmr4_3718	SSF89155	TorD-like
Shewmr4_3720	SSF50692	ADC-like
Shewmr4_3720	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_3721	SSF54862	4Fe-4S ferredoxins
Shewmr4_3722	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_3724	SSF50692	ADC-like
Shewmr4_3724	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
Shewmr4_3725	SSF54862	4Fe-4S ferredoxins
Shewmr4_3726	SSF81342	Transmembrane di-heme cytochromes
Shewmr4_3727	SSF56935	Porins
Shewmr4_3728	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3730	SSF102114	Radical SAM enzymes
Shewmr4_3733	SSF52151	FabD/lysophospholipase-like
Shewmr4_3734	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3734	SSF53850	Periplasmic binding protein-like II
Shewmr4_3735	SSF103481	Multidrug resistance efflux transporter EmrE
Shewmr4_3736	SSF75217	alpha/beta knot
Shewmr4_3740	SSF53474	alpha/beta-Hydrolases
Shewmr4_3740	SSF82171	DPP6 N-terminal domain-like
Shewmr4_3741	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_3742	SSF63411	LuxS/MPP-like metallohydrolase
Shewmr4_3743	SSF53187	Zn-dependent exopeptidases
Shewmr4_3743	SSF55031	Bacterial exopeptidase dimerisation domain
Shewmr4_3745	SSF52490	Tubulin nucleotide-binding domain-like
Shewmr4_3745	SSF55307	Tubulin C-terminal domain-like
Shewmr4_3746	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3748	SSF141868	EAL domain-like
Shewmr4_3748	SSF55073	Nucleotide cyclase
Shewmr4_3748	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3750	SSF103473	MFS general substrate transporter
Shewmr4_3751	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3751	SSF53850	Periplasmic binding protein-like II
Shewmr4_3752	SSF103190	Sensory domain-like
Shewmr4_3752	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3753	SSF90123	ABC transporter transmembrane region
Shewmr4_3754	SSF81901	HCP-like
Shewmr4_3757	SSF158682	TerB-like
Shewmr4_3758	SSF109604	HD-domain/PDEase-like
Shewmr4_3759	SSF74653	TolA/TonB C-terminal domain
Shewmr4_3761	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3761	SSF54909	Dimeric alpha+beta barrel
Shewmr4_3763	SSF54862	4Fe-4S ferredoxins
Shewmr4_3764	SSF48695	Multiheme cytochromes
Shewmr4_3766	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3766	SSF53850	Periplasmic binding protein-like II
Shewmr4_3767	SSF52467	DHS-like NAD/FAD-binding domain
Shewmr4_3767	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
Shewmr4_3768	SSF53474	alpha/beta-Hydrolases
Shewmr4_3769	SSF51604	Enolase C-terminal domain-like
Shewmr4_3769	SSF54826	Enolase N-terminal domain-like
Shewmr4_3770	SSF56801	Acetyl-CoA synthetase-like
Shewmr4_3771	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
Shewmr4_3771	SSF88946	Sigma2 domain of RNA polymerase sigma factors
Shewmr4_3773	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3774	SSF47364	Domain of the SRP/SRP receptor G-proteins
Shewmr4_3774	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3775	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3777	SSF48695	Multiheme cytochromes
Shewmr4_3782	SSF111369	HlyD-like secretion proteins
Shewmr4_3783	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_3783	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_3783	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_3784	SSF55895	Ribonuclease Rh-like
Shewmr4_3785	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3786	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Shewmr4_3788	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
Shewmr4_3789	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3789	SSF51306	LexA/Signal peptidase
Shewmr4_3790	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3791	SSF46626	Cytochrome c
Shewmr4_3791	SSF49503	Cupredoxins
Shewmr4_3791	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
Shewmr4_3792	SSF81442	Cytochrome c oxidase subunit I-like
Shewmr4_3793	SSF110111	Ctag/Cox11
Shewmr4_3794	SSF81452	Cytochrome c oxidase subunit III-like
Shewmr4_3800	SSF52833	Thioredoxin-like
Shewmr4_3801	SSF88713	Glycoside hydrolase/deacetylase
Shewmr4_3803	SSF53474	alpha/beta-Hydrolases
Shewmr4_3803	SSF82171	DPP6 N-terminal domain-like
Shewmr4_3804	SSF117916	Fe-S cluster assembly (FSCA) domain-like
Shewmr4_3804	SSF89360	HesB-like domain
Shewmr4_3805	SSF53271	PRTase-like
Shewmr4_3806	SSF53474	alpha/beta-Hydrolases
Shewmr4_3808	SSF53649	Alkaline phosphatase-like
Shewmr4_3809	SSF158832	Tex N-terminal region-like
Shewmr4_3809	SSF47781	RuvA domain 2-like
Shewmr4_3809	SSF50249	Nucleic acid-binding proteins
Shewmr4_3809	SSF53098	Ribonuclease H-like
Shewmr4_3810	SSF46557	GreA transcript cleavage protein, N-terminal domain
Shewmr4_3810	SSF54534	FKBP-like
Shewmr4_3811	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3811	SSF52172	CheY-like
Shewmr4_3812	SSF158472	HAMP domain-like
Shewmr4_3812	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3812	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3813	SSF58104	Methyl-accepting chemotaxis protein (MCP) signaling domain
Shewmr4_3814	SSF52833	Thioredoxin-like
Shewmr4_3817	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3817	SSF52172	CheY-like
Shewmr4_3818	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3818	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3821	SSF141868	EAL domain-like
Shewmr4_3821	SSF55073	Nucleotide cyclase
Shewmr4_3821	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3823	SSF49503	Cupredoxins
Shewmr4_3823	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
Shewmr4_3824	SSF81442	Cytochrome c oxidase subunit I-like
Shewmr4_3825	SSF81452	Cytochrome c oxidase subunit III-like
Shewmr4_3828	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3829	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3830	SSF53955	Lysozyme-like
Shewmr4_3832	SSF140478	LemA-like
Shewmr4_3836	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_3836	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_3836	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_3837	SSF111369	HlyD-like secretion proteins
Shewmr4_3839	SSF48150	DNA-glycosylase
Shewmr4_3840	SSF47616	GST C-terminal domain-like
Shewmr4_3840	SSF52833	Thioredoxin-like
Shewmr4_3841	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
Shewmr4_3842	SSF55486	Metalloproteases ("zincins"), catalytic domain
Shewmr4_3845	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_3845	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Shewmr4_3848	SSF53633	Carbamate kinase-like
Shewmr4_3848	SSF88697	PUA domain-like
Shewmr4_3849	SSF53720	ALDH-like
Shewmr4_3851	SSF47413	lambda repressor-like DNA-binding domains
Shewmr4_3852	SSF51645	Malate synthase G
Shewmr4_3855	SSF46894	C-terminal effector domain of the bipartite response regulators
Shewmr4_3856	SSF56954	Outer membrane efflux proteins (OEP)
Shewmr4_3857	SSF111369	HlyD-like secretion proteins
Shewmr4_3858	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Shewmr4_3858	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Shewmr4_3858	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
Shewmr4_3859	SSF54913	GlnB-like
Shewmr4_3861	SSF109604	HD-domain/PDEase-like
Shewmr4_3866	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3867	SSF56935	Porins
Shewmr4_3868	SSF56322	ADC synthase
Shewmr4_3869	SSF53850	Periplasmic binding protein-like II
Shewmr4_3871	SSF55729	Acyl-CoA N-acyltransferases (Nat)
Shewmr4_3872	SSF103190	Sensory domain-like
Shewmr4_3872	SSF47384	Homodimeric domain of signal transducing histidine kinase
Shewmr4_3872	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Shewmr4_3873	SSF46689	Homeodomain-like
Shewmr4_3873	SSF52172	CheY-like
Shewmr4_3873	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3874	SSF53850	Periplasmic binding protein-like II
Shewmr4_3875	SSF161098	MetI-like
Shewmr4_3876	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3877	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3878	SSF53218	Molybdenum cofactor biosynthesis proteins
Shewmr4_3878	SSF63867	MoeA C-terminal domain-like
Shewmr4_3878	SSF63882	MoeA N-terminal region -like
Shewmr4_3879	SSF102114	Radical SAM enzymes
Shewmr4_3881	SSF46946	S13-like H2TH domain
Shewmr4_3881	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
Shewmr4_3881	SSF81624	N-terminal domain of MutM-like DNA repair proteins
Shewmr4_3884	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3885	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
Shewmr4_3885	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3885	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Shewmr4_3886	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3888	SSF52374	Nucleotidylyl transferase
Shewmr4_3889	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3890	SSF56784	HAD-like
Shewmr4_3891	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3892	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3894	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3895	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3896	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3897	SSF56112	Protein kinase-like (PK-like)
Shewmr4_3898	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
Shewmr4_3899	SSF46689	Homeodomain-like
Shewmr4_3900	SSF53383	PLP-dependent transferases
Shewmr4_3901	SSF50129	GroES-like
Shewmr4_3901	SSF51735	NAD(P)-binding Rossmann-fold domains
Shewmr4_3902	SSF52821	Rhodanese/Cell cycle control phosphatase
Shewmr4_3903	SSF144091	Rhomboid-like
Shewmr4_3904	SSF52317	Class I glutamine amidotransferase-like
Shewmr4_3905	SSF47807	5' to 3' exonuclease, C-terminal subdomain
Shewmr4_3905	SSF53098	Ribonuclease H-like
Shewmr4_3905	SSF56672	DNA/RNA polymerases
Shewmr4_3905	SSF88723	PIN domain-like
Shewmr4_3906	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3907	SSF46626	Cytochrome c
Shewmr4_3908	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3911	SSF102114	Radical SAM enzymes
Shewmr4_3912	SSF51556	Metallo-dependent hydrolases
Shewmr4_3914	SSF53474	alpha/beta-Hydrolases
Shewmr4_3915	SSF141868	EAL domain-like
Shewmr4_3915	SSF55073	Nucleotide cyclase
Shewmr4_3915	SSF55785	PYP-like sensor domain (PAS domain)
Shewmr4_3916	SSF54862	4Fe-4S ferredoxins
Shewmr4_3918	SSF52096	ClpP/crotonase
Shewmr4_3920	SSF53697	SIS domain
Shewmr4_3920	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Shewmr4_3921	SSF100950	NagB/RpiA/CoA transferase-like
Shewmr4_3921	SSF46785	"Winged helix" DNA-binding domain
Shewmr4_3922	SSF56935	Porins
Shewmr4_3923	SSF51161	Trimeric LpxA-like enzymes
Shewmr4_3923	SSF53448	Nucleotide-diphospho-sugar transferases
Shewmr4_3924	SSF46604	Epsilon subunit of F1F0-ATP synthase C-terminal domain
Shewmr4_3924	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
Shewmr4_3925	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Shewmr4_3925	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Shewmr4_3925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3926	SSF52943	ATP synthase (F1-ATPase), gamma subunit
Shewmr4_3927	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
Shewmr4_3927	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
Shewmr4_3927	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3928	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
Shewmr4_3929	SSF81573	F1F0 ATP synthase subunit B, membrane domain
Shewmr4_3930	SSF81333	F1F0 ATP synthase subunit C
Shewmr4_3931	SSF81336	F1F0 ATP synthase subunit A
Shewmr4_3933	SSF110849	ParB/Sulfiredoxin
Shewmr4_3934	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3935	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
Shewmr4_3936	SSF51905	FAD/NAD(P)-binding domain
Shewmr4_3937	SSF52218	Flavoproteins
Shewmr4_3938	SSF103473	MFS general substrate transporter
Shewmr4_3939	SSF116878	TrmE connector domain
Shewmr4_3939	SSF52540	P-loop containing nucleoside triphosphate hydrolases
Shewmr4_3942	SSF54211	Ribosomal protein S5 domain 2-like