Shal_0015	PWY-5136	fatty acid β-oxidation II (peroxisome)
Shal_0015	PWY-6435	4-hydroxybenzoate biosynthesis V
Shal_0015	PWY-6863	pyruvate fermentation to hexanol
Shal_0015	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Shal_0015	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Shal_0015	PWY-6948	sitosterol degradation to androstenedione
Shal_0015	PWY-7094	fatty acid salvage
Shal_0015	PWY-7288	fatty acid β-oxidation (peroxisome, yeast)
Shal_0015	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Shal_0015	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Shal_0015	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
Shal_0015	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Shal_0015	PWY-735	jasmonic acid biosynthesis
Shal_0016	PWY-1361	benzoyl-CoA degradation I (aerobic)
Shal_0016	PWY-5109	2-methylbutanoate biosynthesis
Shal_0016	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Shal_0016	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
Shal_0016	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Shal_0016	PWY-5177	glutaryl-CoA degradation
Shal_0016	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Shal_0016	PWY-6435	4-hydroxybenzoate biosynthesis V
Shal_0016	PWY-6583	pyruvate fermentation to butanol I
Shal_0016	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
Shal_0016	PWY-6863	pyruvate fermentation to hexanol
Shal_0016	PWY-6883	pyruvate fermentation to butanol II
Shal_0016	PWY-6944	androstenedione degradation
Shal_0016	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Shal_0016	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Shal_0016	PWY-7007	methyl ketone biosynthesis
Shal_0016	PWY-7046	4-coumarate degradation (anaerobic)
Shal_0016	PWY-7094	fatty acid salvage
Shal_0016	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Shal_0016	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
Shal_0016	PWY-735	jasmonic acid biosynthesis
Shal_0016	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Shal_0034	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Shal_0034	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Shal_0035	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Shal_0043	PWY-1042	glycolysis IV (plant cytosol)
Shal_0043	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Shal_0043	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_0043	PWY-5723	Rubisco shunt
Shal_0043	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_0043	PWY-6886	1-butanol autotrophic biosynthesis
Shal_0043	PWY-6901	superpathway of glucose and xylose degradation
Shal_0043	PWY-7003	glycerol degradation to butanol
Shal_0043	PWY-7124	ethylene biosynthesis V (engineered)
Shal_0043	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Shal_0046	PWY-5667	CDP-diacylglycerol biosynthesis I
Shal_0046	PWY-5981	CDP-diacylglycerol biosynthesis III
Shal_0071	PWY-5028	L-histidine degradation II
Shal_0071	PWY-5030	L-histidine degradation III
Shal_0073	PWY-5028	L-histidine degradation II
Shal_0073	PWY-5030	L-histidine degradation III
Shal_0074	PWY-5028	L-histidine degradation II
Shal_0074	PWY-5030	L-histidine degradation III
Shal_0095	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
Shal_0095	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Shal_0095	PWY-6148	tetrahydromethanopterin biosynthesis
Shal_0122	PWY-6823	molybdenum cofactor biosynthesis
Shal_0126	PWY-6823	molybdenum cofactor biosynthesis
Shal_0144	PWY-6823	molybdenum cofactor biosynthesis
Shal_0145	PWY-6823	molybdenum cofactor biosynthesis
Shal_0146	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Shal_0155	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Shal_0155	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Shal_0155	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Shal_0155	PWY-6406	salicylate biosynthesis I
Shal_0169	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_0169	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_0190	PWY-4081	glutathione redox reactions I
Shal_0244	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_0257	PWY-3781	aerobic respiration I (cytochrome c)
Shal_0257	PWY-4521	arsenite oxidation I (respiratory)
Shal_0257	PWY-6692	Fe(II) oxidation
Shal_0257	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_0261	PWY-4261	glycerol degradation I
Shal_0271	PWY-5667	CDP-diacylglycerol biosynthesis I
Shal_0271	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Shal_0294	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Shal_0294	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Shal_0296	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Shal_0296	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Shal_0297	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Shal_0297	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Shal_0353	PWY-381	nitrate reduction II (assimilatory)
Shal_0353	PWY-5675	nitrate reduction V (assimilatory)
Shal_0353	PWY-6549	L-glutamine biosynthesis III
Shal_0353	PWY-6963	ammonia assimilation cycle I
Shal_0353	PWY-6964	ammonia assimilation cycle II
Shal_0356	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Shal_0356	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Shal_0367	PWY-5367	petroselinate biosynthesis
Shal_0367	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_0367	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_0367	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_0367	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_0367	PWY-6113	superpathway of mycolate biosynthesis
Shal_0367	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_0367	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_0367	PWY-6951	Shal_0367
Shal_0367	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Shal_0367	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_0367	PWYG-321	mycolate biosynthesis
Shal_0377	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_0377	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_0377	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_0377	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_0377	PWY-6113	superpathway of mycolate biosynthesis
Shal_0377	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_0377	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_0377	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_0377	PWYG-321	mycolate biosynthesis
Shal_0392	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Shal_0423	PWY-5686	UMP biosynthesis
Shal_0424	PWY-5663	tetrahydrobiopterin biosynthesis I
Shal_0424	PWY-5664	tetrahydrobiopterin biosynthesis II
Shal_0424	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_0424	PWY-6703	preQ<sub>0</sub> biosynthesis
Shal_0424	PWY-6983	tetrahydrobiopterin biosynthesis III
Shal_0424	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Shal_0427	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_0427	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_0427	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_0427	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Shal_0432	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_0438	PWY-6871	3-methylbutanol biosynthesis
Shal_0439	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Shal_0444	PWY-4261	glycerol degradation I
Shal_0451	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_0451	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_0452	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_0452	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Shal_0452	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_0453	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_0453	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_0455	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_0455	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Shal_0455	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Shal_0455	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_0456	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_0456	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_0464	PWY-6502	oxidized GTP and dGTP detoxification
Shal_0472	PWY-5316	nicotine biosynthesis
Shal_0472	PWY-5381	pyridine nucleotide cycling (plants)
Shal_0472	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Shal_0472	PWY-7342	superpathway of nicotine biosynthesis
Shal_0476	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_0476	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_0476	PWY-7560	methylerythritol phosphate pathway II
Shal_0478	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Shal_0478	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Shal_0482	PWY-5747	2-methylcitrate cycle II
Shal_0484	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Shal_0484	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Shal_0487	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Shal_0487	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Shal_0487	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Shal_0488	PWY-6123	inosine-5'-phosphate biosynthesis I
Shal_0488	PWY-6124	inosine-5'-phosphate biosynthesis II
Shal_0488	PWY-7234	inosine-5'-phosphate biosynthesis III
Shal_0503	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_0535	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_0535	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_0535	PWY-6608	guanosine nucleotides degradation III
Shal_0535	PWY-6609	adenine and adenosine salvage III
Shal_0535	PWY-6611	adenine and adenosine salvage V
Shal_0535	PWY-6620	guanine and guanosine salvage
Shal_0535	PWY-6627	salinosporamide A biosynthesis
Shal_0535	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Shal_0535	PWY-7179	purine deoxyribonucleosides degradation I
Shal_0535	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_0551	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_0567	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_0596	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Shal_0596	PWY-6416	quinate degradation II
Shal_0596	PWY-6707	gallate biosynthesis
Shal_0614	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_0623	PWY-2941	L-lysine biosynthesis II
Shal_0623	PWY-2942	L-lysine biosynthesis III
Shal_0623	PWY-5097	L-lysine biosynthesis VI
Shal_0623	PWY-6559	spermidine biosynthesis II
Shal_0623	PWY-6562	norspermidine biosynthesis
Shal_0623	PWY-7153	grixazone biosynthesis
Shal_0624	PWY-2201	folate transformations I
Shal_0624	PWY-3841	folate transformations II
Shal_0625	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_0635	PWY-5686	UMP biosynthesis
Shal_0654	PWY-5686	UMP biosynthesis
Shal_0659	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_0659	PWY-6606	guanosine nucleotides degradation II
Shal_0659	PWY-6608	guanosine nucleotides degradation III
Shal_0659	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Shal_0662	PWY-1881	formate oxidation to CO<sub>2</sub>
Shal_0662	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_0662	PWY-6696	oxalate degradation III
Shal_0664	PWY-2723	trehalose degradation V
Shal_0664	PWY-6317	galactose degradation I (Leloir pathway)
Shal_0664	PWY-6737	starch degradation V
Shal_0665	PWY-3821	galactose degradation III
Shal_0665	PWY-6317	galactose degradation I (Leloir pathway)
Shal_0665	PWY-6527	stachyose degradation
Shal_0667	PWY-6807	xyloglucan degradation II (exoglucanase)
Shal_0683	PWY-5686	UMP biosynthesis
Shal_0687	PWY-4981	L-proline biosynthesis II (from arginine)
Shal_0687	PWY-4984	urea cycle
Shal_0687	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_0689	PWY-4981	L-proline biosynthesis II (from arginine)
Shal_0690	PWY-4981	L-proline biosynthesis II (from arginine)
Shal_0699	PWY-5491	diethylphosphate degradation
Shal_0706	PWY-4381	fatty acid biosynthesis initiation I
Shal_0706	PWY-5743	3-hydroxypropanoate cycle
Shal_0706	PWY-5744	glyoxylate assimilation
Shal_0706	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Shal_0706	PWY-6679	jadomycin biosynthesis
Shal_0706	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_0726	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_0726	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_0726	PWY-6608	guanosine nucleotides degradation III
Shal_0726	PWY-6609	adenine and adenosine salvage III
Shal_0726	PWY-6611	adenine and adenosine salvage V
Shal_0726	PWY-6620	guanine and guanosine salvage
Shal_0726	PWY-6627	salinosporamide A biosynthesis
Shal_0726	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Shal_0726	PWY-7179	purine deoxyribonucleosides degradation I
Shal_0726	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_0729	PWY-5506	methanol oxidation to formaldehyde IV
Shal_0737	PWY-5344	L-homocysteine biosynthesis
Shal_0737	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Shal_0741	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Shal_0741	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Shal_0745	PWY-6599	guanine and guanosine salvage II
Shal_0745	PWY-6609	adenine and adenosine salvage III
Shal_0745	PWY-6610	adenine and adenosine salvage IV
Shal_0745	PWY-6620	guanine and guanosine salvage
Shal_0750	PWY-6654	phosphopantothenate biosynthesis III
Shal_0751	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_0751	PWY-6148	tetrahydromethanopterin biosynthesis
Shal_0751	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Shal_0751	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_0756	PWY-5988	wound-induced proteolysis I
Shal_0756	PWY-6018	seed germination protein turnover
Shal_0761	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_0761	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Shal_0761	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Shal_0761	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_0784	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_0788	PWY-2941	L-lysine biosynthesis II
Shal_0788	PWY-2942	L-lysine biosynthesis III
Shal_0788	PWY-5097	L-lysine biosynthesis VI
Shal_0788	PWY-6559	spermidine biosynthesis II
Shal_0788	PWY-6562	norspermidine biosynthesis
Shal_0788	PWY-7153	grixazone biosynthesis
Shal_0805	PWY-4261	glycerol degradation I
Shal_0805	PWY-6118	glycerol-3-phosphate shuttle
Shal_0805	PWY-6952	glycerophosphodiester degradation
Shal_0807	PWY-1881	formate oxidation to CO<sub>2</sub>
Shal_0807	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_0807	PWY-6696	oxalate degradation III
Shal_0813	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Shal_0813	PWY-6855	chitin degradation I (archaea)
Shal_0813	PWY-6906	chitin derivatives degradation
Shal_0819	PWY-6823	molybdenum cofactor biosynthesis
Shal_0819	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_0819	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_0819	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Shal_0843	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Shal_0843	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Shal_0844	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Shal_0844	PWY-5723	Rubisco shunt
Shal_0844	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_0844	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_0844	PWY-6901	superpathway of glucose and xylose degradation
Shal_0844	PWY-7560	methylerythritol phosphate pathway II
Shal_0845	PWY-1042	glycolysis IV (plant cytosol)
Shal_0845	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_0845	PWY-6901	superpathway of glucose and xylose degradation
Shal_0845	PWY-7003	glycerol degradation to butanol
Shal_0846	PWY-1042	glycolysis IV (plant cytosol)
Shal_0846	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_0846	PWY-6886	1-butanol autotrophic biosynthesis
Shal_0846	PWY-6901	superpathway of glucose and xylose degradation
Shal_0846	PWY-7003	glycerol degradation to butanol
Shal_0847	PWY-1042	glycolysis IV (plant cytosol)
Shal_0847	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Shal_0847	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_0847	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_0847	PWY-7385	1,3-propanediol biosynthesis (engineered)
Shal_0870	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Shal_0870	PWY-5723	Rubisco shunt
Shal_0877	PWY-4061	glutathione-mediated detoxification I
Shal_0877	PWY-6842	glutathione-mediated detoxification II
Shal_0877	PWY-7112	4-hydroxy-2-nonenal detoxification
Shal_0886	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_0892	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_0892	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_0892	PWY-6164	3-dehydroquinate biosynthesis I
Shal_0903	PWY-1622	formaldehyde assimilation I (serine pathway)
Shal_0903	PWY-5392	reductive TCA cycle II
Shal_0903	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_0903	PWY-5690	TCA cycle II (plants and fungi)
Shal_0903	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_0903	PWY-6728	methylaspartate cycle
Shal_0903	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_0903	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Shal_0903	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_0910	PWY-3841	folate transformations II
Shal_0910	PWY-6614	tetrahydrofolate biosynthesis
Shal_0962	PWY-5988	wound-induced proteolysis I
Shal_0962	PWY-6018	seed germination protein turnover
Shal_0984	PWY-5692	allantoin degradation to glyoxylate II
Shal_0984	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Shal_0985	PWY-5642	2,4-dinitrotoluene degradation
Shal_0985	PWY-6373	acrylate degradation
Shal_0991	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_0991	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_0995	PWY-381	nitrate reduction II (assimilatory)
Shal_0995	PWY-5675	nitrate reduction V (assimilatory)
Shal_0995	PWY-6549	L-glutamine biosynthesis III
Shal_0995	PWY-6963	ammonia assimilation cycle I
Shal_0995	PWY-6964	ammonia assimilation cycle II
Shal_1011	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_1011	PWY-6148	tetrahydromethanopterin biosynthesis
Shal_1011	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Shal_1011	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_1012	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_1012	PWY-6148	tetrahydromethanopterin biosynthesis
Shal_1012	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Shal_1012	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_1021	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_1039	PWY-5491	diethylphosphate degradation
Shal_1051	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Shal_1051	PWY-6153	autoinducer AI-2 biosynthesis I
Shal_1051	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Shal_1057	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Shal_1057	PWY-7494	choline degradation IV
Shal_1070	PWY-3841	folate transformations II
Shal_1070	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_1070	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_1070	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_1070	PWY-7199	pyrimidine deoxyribonucleosides salvage
Shal_1070	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_1076	PWY-5316	nicotine biosynthesis
Shal_1076	PWY-7342	superpathway of nicotine biosynthesis
Shal_1087	PWY-6012	acyl carrier protein metabolism I
Shal_1087	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Shal_1088	PWY-0	putrescine degradation III
Shal_1088	PWY-6117	spermine and spermidine degradation I
Shal_1099	PWY-6829	tRNA methylation (yeast)
Shal_1099	PWY-7285	methylwyosine biosynthesis
Shal_1099	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Shal_1101	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_1101	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_1101	PWY-6164	3-dehydroquinate biosynthesis I
Shal_1102	PWY-3461	L-tyrosine biosynthesis II
Shal_1102	PWY-3462	L-phenylalanine biosynthesis II
Shal_1102	PWY-6120	L-tyrosine biosynthesis III
Shal_1102	PWY-6627	salinosporamide A biosynthesis
Shal_1102	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Shal_1107	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_1107	PWY-3461	L-tyrosine biosynthesis II
Shal_1107	PWY-3462	L-phenylalanine biosynthesis II
Shal_1107	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_1107	PWY-6120	L-tyrosine biosynthesis III
Shal_1107	PWY-6627	salinosporamide A biosynthesis
Shal_1107	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Shal_1114	PWY-2941	L-lysine biosynthesis II
Shal_1114	PWY-2942	L-lysine biosynthesis III
Shal_1114	PWY-5097	L-lysine biosynthesis VI
Shal_1114	PWY-6559	spermidine biosynthesis II
Shal_1114	PWY-6562	norspermidine biosynthesis
Shal_1114	PWY-7153	grixazone biosynthesis
Shal_1115	PWY-702	L-methionine biosynthesis II
Shal_1121	PWY-3801	sucrose degradation II (sucrose synthase)
Shal_1121	PWY-5054	sorbitol biosynthesis I
Shal_1121	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Shal_1121	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Shal_1121	PWY-5659	GDP-mannose biosynthesis
Shal_1121	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_1121	PWY-621	sucrose degradation III (sucrose invertase)
Shal_1121	PWY-622	starch biosynthesis
Shal_1121	PWY-6531	mannitol cycle
Shal_1121	PWY-6981	chitin biosynthesis
Shal_1121	PWY-7238	sucrose biosynthesis II
Shal_1121	PWY-7347	sucrose biosynthesis III
Shal_1121	PWY-7385	1,3-propanediol biosynthesis (engineered)
Shal_1122	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Shal_1122	PWY-5723	Rubisco shunt
Shal_1130	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Shal_1130	PWY-6167	flavin biosynthesis II (archaea)
Shal_1130	PWY-6168	flavin biosynthesis III (fungi)
Shal_1134	PWY-7560	methylerythritol phosphate pathway II
Shal_1148	PWY-6902	chitin degradation II
Shal_1150	PWY-6906	chitin derivatives degradation
Shal_1150	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Shal_1150	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Shal_1167	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Shal_1171	PWY-3341	L-proline biosynthesis III
Shal_1171	PWY-4981	L-proline biosynthesis II (from arginine)
Shal_1171	PWY-6344	L-ornithine degradation II (Stickland reaction)
Shal_1172	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_1203	PWY-1622	formaldehyde assimilation I (serine pathway)
Shal_1203	PWY-181	photorespiration
Shal_1203	PWY-2161	folate polyglutamylation
Shal_1203	PWY-2201	folate transformations I
Shal_1203	PWY-3661	glycine betaine degradation I
Shal_1203	PWY-3661-1	glycine betaine degradation II (mammalian)
Shal_1203	PWY-3841	folate transformations II
Shal_1203	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_1206	PWY-6167	flavin biosynthesis II (archaea)
Shal_1206	PWY-6168	flavin biosynthesis III (fungi)
Shal_1206	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1207	PWY-6167	flavin biosynthesis II (archaea)
Shal_1207	PWY-6168	flavin biosynthesis III (fungi)
Shal_1207	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_1208	PWY-6167	flavin biosynthesis II (archaea)
Shal_1208	PWY-6168	flavin biosynthesis III (fungi)
Shal_1210	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Shal_1210	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Shal_1210	PWY-6896	thiamin salvage I
Shal_1210	PWY-6897	thiamin salvage II
Shal_1211	PWY-5269	cardiolipin biosynthesis II
Shal_1211	PWY-5668	cardiolipin biosynthesis I
Shal_1221	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Shal_1221	PWY-7177	UTP and CTP dephosphorylation II
Shal_1221	PWY-7185	UTP and CTP dephosphorylation I
Shal_1222	PWY-1042	glycolysis IV (plant cytosol)
Shal_1222	PWY-1622	formaldehyde assimilation I (serine pathway)
Shal_1222	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Shal_1222	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_1222	PWY-5723	Rubisco shunt
Shal_1222	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_1222	PWY-6886	1-butanol autotrophic biosynthesis
Shal_1222	PWY-6901	superpathway of glucose and xylose degradation
Shal_1222	PWY-7003	glycerol degradation to butanol
Shal_1222	PWY-7124	ethylene biosynthesis V (engineered)
Shal_1222	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Shal_1224	PWY-7560	methylerythritol phosphate pathway II
Shal_1225	PWY-7560	methylerythritol phosphate pathway II
Shal_1227	PWY-5381	pyridine nucleotide cycling (plants)
Shal_1227	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_1227	PWY-6596	adenosine nucleotides degradation I
Shal_1227	PWY-6606	guanosine nucleotides degradation II
Shal_1227	PWY-6607	guanosine nucleotides degradation I
Shal_1227	PWY-6608	guanosine nucleotides degradation III
Shal_1227	PWY-7185	UTP and CTP dephosphorylation I
Shal_1235	PWY-6339	syringate degradation
Shal_1237	PWY-6339	syringate degradation
Shal_1241	PWY-6840	homoglutathione biosynthesis
Shal_1241	PWY-7255	ergothioneine biosynthesis I (bacteria)
Shal_1245	PWY-6123	inosine-5'-phosphate biosynthesis I
Shal_1245	PWY-7234	inosine-5'-phosphate biosynthesis III
Shal_1262	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_1352	PWY-6728	methylaspartate cycle
Shal_1352	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_1352	PWY-7118	chitin degradation to ethanol
Shal_1352	PWY-7294	xylose degradation IV
Shal_1352	PWY-7295	L-arabinose degradation IV
Shal_1367	PWY-7560	methylerythritol phosphate pathway II
Shal_1376	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_1376	PWY-6596	adenosine nucleotides degradation I
Shal_1376	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1377	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1380	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Shal_1380	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Shal_1380	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Shal_1383	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Shal_1393	PWY-6143	CMP-pseudaminate biosynthesis
Shal_1393	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
Shal_1393	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
Shal_1393	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
Shal_1395	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_1395	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_1400	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_1400	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_1400	PWY-7560	methylerythritol phosphate pathway II
Shal_1409	PWY-6759	hydrogen production III
Shal_1409	PWY-6785	hydrogen production VIII
Shal_1411	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Shal_1413	PWY-5198	factor 420 biosynthesis
Shal_1451	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1486	PWY-3221	dTDP-L-rhamnose biosynthesis II
Shal_1486	PWY-6808	dTDP-D-forosamine biosynthesis
Shal_1486	PWY-6942	dTDP-D-desosamine biosynthesis
Shal_1486	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Shal_1486	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Shal_1486	PWY-6974	dTDP-L-olivose biosynthesis
Shal_1486	PWY-6976	dTDP-L-mycarose biosynthesis
Shal_1486	PWY-7104	dTDP-L-megosamine biosynthesis
Shal_1486	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Shal_1486	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Shal_1486	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Shal_1486	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Shal_1486	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Shal_1486	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Shal_1486	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Shal_1486	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Shal_1487	PWY-3221	dTDP-L-rhamnose biosynthesis II
Shal_1487	PWY-6808	dTDP-D-forosamine biosynthesis
Shal_1487	PWY-6942	dTDP-D-desosamine biosynthesis
Shal_1487	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Shal_1487	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Shal_1487	PWY-6974	dTDP-L-olivose biosynthesis
Shal_1487	PWY-6976	dTDP-L-mycarose biosynthesis
Shal_1487	PWY-7104	dTDP-L-megosamine biosynthesis
Shal_1487	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Shal_1487	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Shal_1487	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Shal_1487	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Shal_1487	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Shal_1487	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Shal_1487	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Shal_1487	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Shal_1498	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_1498	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Shal_1498	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_1498	PWY-7290	<i>Escherichia coli</i> serotype O86 <i>O</i>-antigen biosynthesis
Shal_1498	PWY-7530	&beta;-D-galactosaminyl-(1&rarr;3)-<i>N</i>-acetyl-&alpha;-D-galactosamine biosynthesis
Shal_1499	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_1499	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Shal_1499	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_1499	PWY-7290	<i>Escherichia coli</i> serotype O86 <i>O</i>-antigen biosynthesis
Shal_1499	PWY-7530	&beta;-D-galactosaminyl-(1&rarr;3)-<i>N</i>-acetyl-&alpha;-D-galactosamine biosynthesis
Shal_1501	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Shal_1529	PWY-3821	galactose degradation III
Shal_1529	PWY-6317	galactose degradation I (Leloir pathway)
Shal_1529	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Shal_1529	PWY-6527	stachyose degradation
Shal_1529	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Shal_1529	PWY-7344	UDP-D-galactose biosynthesis
Shal_1530	PWY-3801	sucrose degradation II (sucrose synthase)
Shal_1530	PWY-6527	stachyose degradation
Shal_1530	PWY-6981	chitin biosynthesis
Shal_1530	PWY-7238	sucrose biosynthesis II
Shal_1530	PWY-7343	UDP-glucose biosynthesis
Shal_1531	PWY-6134	L-tyrosine biosynthesis IV
Shal_1531	PWY-7158	L-phenylalanine degradation V
Shal_1532	PWY-7158	L-phenylalanine degradation V
Shal_1539	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_1551	PWY-6012	acyl carrier protein metabolism I
Shal_1553	PWY-6700	queuosine biosynthesis
Shal_1554	PWY-6700	queuosine biosynthesis
Shal_1560	PWY-5194	siroheme biosynthesis
Shal_1560	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Shal_1568	PWY-2301	<i>myo</i>-inositol biosynthesis
Shal_1568	PWY-4702	phytate degradation I
Shal_1568	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Shal_1570	PWY-6936	seleno-amino acid biosynthesis
Shal_1570	PWY-7274	D-cycloserine biosynthesis
Shal_1572	PWY-6823	molybdenum cofactor biosynthesis
Shal_1572	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_1572	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_1572	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Shal_1580	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_1580	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Shal_1580	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_1580	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_1580	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Shal_1580	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_1580	PWY-7205	CMP phosphorylation
Shal_1580	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_1580	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_1580	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1580	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_1580	PWY-7224	purine deoxyribonucleosides salvage
Shal_1580	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_1580	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Shal_1589	PWY-6605	adenine and adenosine salvage II
Shal_1589	PWY-6610	adenine and adenosine salvage IV
Shal_1598	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1609	PWY-6902	chitin degradation II
Shal_1632	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Shal_1632	PWY-6153	autoinducer AI-2 biosynthesis I
Shal_1632	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Shal_1639	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_1657	PWY-5958	acridone alkaloid biosynthesis
Shal_1657	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Shal_1657	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Shal_1658	PWY-5958	acridone alkaloid biosynthesis
Shal_1658	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Shal_1658	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Shal_1679	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Shal_1679	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Shal_1680	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Shal_1680	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Shal_1680	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Shal_1681	PWY-7183	pyrimidine nucleobases salvage I
Shal_1697	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Shal_1697	PWY-7118	chitin degradation to ethanol
Shal_1703	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_1703	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_1703	PWY-6164	3-dehydroquinate biosynthesis I
Shal_1705	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_1706	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_1706	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_1713	PWY-6123	inosine-5'-phosphate biosynthesis I
Shal_1713	PWY-6124	inosine-5'-phosphate biosynthesis II
Shal_1713	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_1713	PWY-7234	inosine-5'-phosphate biosynthesis III
Shal_1718	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_1718	PWY-6549	L-glutamine biosynthesis III
Shal_1718	PWY-6728	methylaspartate cycle
Shal_1718	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_1718	PWY-7124	ethylene biosynthesis V (engineered)
Shal_1718	PWY-7254	TCA cycle VII (acetate-producers)
Shal_1718	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Shal_1732	PWY-6936	seleno-amino acid biosynthesis
Shal_1733	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Shal_1740	PWY-7039	phosphatidate metabolism, as a signaling molecule
Shal_1775	PWY-4381	fatty acid biosynthesis initiation I
Shal_1776	PWY-4381	fatty acid biosynthesis initiation I
Shal_1776	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Shal_1776	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_1777	PWY-5367	petroselinate biosynthesis
Shal_1777	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_1777	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_1777	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_1777	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_1777	PWY-6113	superpathway of mycolate biosynthesis
Shal_1777	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_1777	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_1777	PWY-6951	Shal_1777
Shal_1777	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Shal_1777	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_1777	PWYG-321	mycolate biosynthesis
Shal_1783	PWY-6556	pyrimidine ribonucleosides salvage II
Shal_1783	PWY-7181	pyrimidine deoxyribonucleosides degradation
Shal_1783	PWY-7193	pyrimidine ribonucleosides salvage I
Shal_1783	PWY-7199	pyrimidine deoxyribonucleosides salvage
Shal_1803	PWY-40	putrescine biosynthesis I
Shal_1803	PWY-43	putrescine biosynthesis II
Shal_1803	PWY-6305	putrescine biosynthesis IV
Shal_1803	PWY-6834	spermidine biosynthesis III
Shal_1804	PWY-6834	spermidine biosynthesis III
Shal_1805	PWY-40	putrescine biosynthesis I
Shal_1805	PWY-6305	putrescine biosynthesis IV
Shal_1806	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Shal_1806	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Shal_1816	PWY-6123	inosine-5'-phosphate biosynthesis I
Shal_1816	PWY-6124	inosine-5'-phosphate biosynthesis II
Shal_1816	PWY-7234	inosine-5'-phosphate biosynthesis III
Shal_1854	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_1854	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_1871	PWY-5386	methylglyoxal degradation I
Shal_1900	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Shal_1901	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Shal_1901	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Shal_1901	PWY-6897	thiamin salvage II
Shal_1901	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Shal_1901	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Shal_1901	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Shal_1901	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Shal_1904	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_1904	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_1905	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_1905	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Shal_1924	PWY-5386	methylglyoxal degradation I
Shal_1935	PWY-6703	preQ<sub>0</sub> biosynthesis
Shal_1936	PWY-6703	preQ<sub>0</sub> biosynthesis
Shal_1947	PWY-1042	glycolysis IV (plant cytosol)
Shal_1947	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Shal_1947	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_1947	PWY-5723	Rubisco shunt
Shal_1947	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_1947	PWY-6886	1-butanol autotrophic biosynthesis
Shal_1947	PWY-6901	superpathway of glucose and xylose degradation
Shal_1947	PWY-7003	glycerol degradation to butanol
Shal_1947	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Shal_1947	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_1949	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Shal_1950	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Shal_1950	PWY-6855	chitin degradation I (archaea)
Shal_1950	PWY-6906	chitin derivatives degradation
Shal_1951	PWY-5101	L-isoleucine biosynthesis II
Shal_1951	PWY-5103	L-isoleucine biosynthesis III
Shal_1951	PWY-5104	L-isoleucine biosynthesis IV
Shal_1951	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_1952	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Shal_1952	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Shal_1952	PWY-7242	D-fructuronate degradation
Shal_1952	PWY-7310	D-glucosaminate degradation
Shal_1958	PWY-5392	reductive TCA cycle II
Shal_1958	PWY-5537	pyruvate fermentation to acetate V
Shal_1958	PWY-5538	pyruvate fermentation to acetate VI
Shal_1958	PWY-5690	TCA cycle II (plants and fungi)
Shal_1958	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_1958	PWY-6728	methylaspartate cycle
Shal_1958	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_1958	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Shal_1961	PWY-5747	2-methylcitrate cycle II
Shal_2004	PWY-6803	phosphatidylcholine acyl editing
Shal_2004	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Shal_2004	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Shal_2004	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Shal_2009	PWY-4261	glycerol degradation I
Shal_2017	PWY-6167	flavin biosynthesis II (archaea)
Shal_2017	PWY-6168	flavin biosynthesis III (fungi)
Shal_2017	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_2031	PWY-5669	phosphatidylethanolamine biosynthesis I
Shal_2035	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_2035	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_2035	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_2035	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_2035	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2035	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2035	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_2035	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Shal_2036	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_2036	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_2036	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_2036	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_2036	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2036	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2036	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_2036	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Shal_2038	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Shal_2038	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Shal_2038	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Shal_2038	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Shal_2038	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Shal_2038	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Shal_2038	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Shal_2038	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Shal_2038	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Shal_2038	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Shal_2042	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_2042	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Shal_2042	PWY-6638	sulfolactate degradation III
Shal_2042	PWY-6642	(<i>R</i>)-cysteate degradation
Shal_2042	PWY-6643	coenzyme M biosynthesis II
Shal_2042	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Shal_2042	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Shal_2042	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_2043	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Shal_2044	PWY-7205	CMP phosphorylation
Shal_2049	PWY-5686	UMP biosynthesis
Shal_2055	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_2055	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_2058	PWY-5269	cardiolipin biosynthesis II
Shal_2058	PWY-5668	cardiolipin biosynthesis I
Shal_2076	PWY-1042	glycolysis IV (plant cytosol)
Shal_2076	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_2076	PWY-6901	superpathway of glucose and xylose degradation
Shal_2076	PWY-7003	glycerol degradation to butanol
Shal_2078	PWY-1042	glycolysis IV (plant cytosol)
Shal_2078	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_2078	PWY-6901	superpathway of glucose and xylose degradation
Shal_2078	PWY-7003	glycerol degradation to butanol
Shal_2088	PWY-5162	2-oxopentenoate degradation
Shal_2089	PWY-5162	2-oxopentenoate degradation
Shal_2089	PWY-5436	L-threonine degradation IV
Shal_2089	PWY-5480	pyruvate fermentation to ethanol I
Shal_2089	PWY-6587	pyruvate fermentation to ethanol III
Shal_2089	PWY-7085	triethylamine degradation
Shal_2089	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Shal_2128	PWY-723	alkylnitronates degradation
Shal_2134	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Shal_2197	PWY-3781	aerobic respiration I (cytochrome c)
Shal_2197	PWY-4521	arsenite oxidation I (respiratory)
Shal_2197	PWY-6692	Fe(II) oxidation
Shal_2197	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_2198	PWY-3781	aerobic respiration I (cytochrome c)
Shal_2198	PWY-4521	arsenite oxidation I (respiratory)
Shal_2198	PWY-6692	Fe(II) oxidation
Shal_2198	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_2212	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_2212	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Shal_2212	PWY-6638	sulfolactate degradation III
Shal_2212	PWY-6642	(<i>R</i>)-cysteate degradation
Shal_2212	PWY-6643	coenzyme M biosynthesis II
Shal_2212	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Shal_2212	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Shal_2212	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_2213	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Shal_2231	PWY-5316	nicotine biosynthesis
Shal_2231	PWY-7342	superpathway of nicotine biosynthesis
Shal_2232	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Shal_2238	PWY-2723	trehalose degradation V
Shal_2238	PWY-3801	sucrose degradation II (sucrose synthase)
Shal_2238	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Shal_2238	PWY-5661	GDP-glucose biosynthesis
Shal_2238	PWY-5661-1	Shal_2238
Shal_2238	PWY-5940	streptomycin biosynthesis
Shal_2238	PWY-5941	glycogen degradation II (eukaryotic)
Shal_2238	PWY-622	starch biosynthesis
Shal_2238	PWY-6731	starch degradation III
Shal_2238	PWY-6737	starch degradation V
Shal_2238	PWY-6749	CMP-legionaminate biosynthesis I
Shal_2238	PWY-7238	sucrose biosynthesis II
Shal_2238	PWY-7343	UDP-glucose biosynthesis
Shal_2250	PWY-3162	L-tryptophan degradation V (side chain pathway)
Shal_2250	PWY-5057	L-valine degradation II
Shal_2250	PWY-5076	L-leucine degradation III
Shal_2250	PWY-5078	L-isoleucine degradation II
Shal_2250	PWY-5079	L-phenylalanine degradation III
Shal_2250	PWY-5082	L-methionine degradation III
Shal_2250	PWY-5162	2-oxopentenoate degradation
Shal_2250	PWY-5436	L-threonine degradation IV
Shal_2250	PWY-5480	pyruvate fermentation to ethanol I
Shal_2250	PWY-5486	pyruvate fermentation to ethanol II
Shal_2250	PWY-5751	phenylethanol biosynthesis
Shal_2250	PWY-6028	acetoin degradation
Shal_2250	PWY-6313	serotonin degradation
Shal_2250	PWY-6333	acetaldehyde biosynthesis I
Shal_2250	PWY-6342	noradrenaline and adrenaline degradation
Shal_2250	PWY-6587	pyruvate fermentation to ethanol III
Shal_2250	PWY-6802	salidroside biosynthesis
Shal_2250	PWY-6871	3-methylbutanol biosynthesis
Shal_2250	PWY-7013	L-1,2-propanediol degradation
Shal_2250	PWY-7085	triethylamine degradation
Shal_2250	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_2250	PWY-7118	chitin degradation to ethanol
Shal_2250	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Shal_2250	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Shal_2250	PWY-7557	dehydrodiconiferyl alcohol degradation
Shal_2251	PWY-6728	methylaspartate cycle
Shal_2251	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2251	PWY-7118	chitin degradation to ethanol
Shal_2251	PWY-7294	xylose degradation IV
Shal_2251	PWY-7295	L-arabinose degradation IV
Shal_2253	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2256	PWY-5392	reductive TCA cycle II
Shal_2256	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_2256	PWY-5690	TCA cycle II (plants and fungi)
Shal_2256	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_2256	PWY-6728	methylaspartate cycle
Shal_2256	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2256	PWY-7254	TCA cycle VII (acetate-producers)
Shal_2256	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Shal_2257	PWY-5958	acridone alkaloid biosynthesis
Shal_2257	PWY-6543	4-aminobenzoate biosynthesis
Shal_2257	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Shal_2257	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Shal_2257	PWY-6722	candicidin biosynthesis
Shal_2296	PWY-6728	methylaspartate cycle
Shal_2296	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2296	PWY-7118	chitin degradation to ethanol
Shal_2296	PWY-7294	xylose degradation IV
Shal_2296	PWY-7295	L-arabinose degradation IV
Shal_2313	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Shal_2313	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_2313	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Shal_2313	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Shal_2316	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_2316	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_2321	PWY-2941	L-lysine biosynthesis II
Shal_2321	PWY-2942	L-lysine biosynthesis III
Shal_2321	PWY-5097	L-lysine biosynthesis VI
Shal_2329	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_2329	PWY-4621	arsenate detoxification II (glutaredoxin)
Shal_2336	PWY-6854	ethylene biosynthesis III (microbes)
Shal_2344	PWY-5269	cardiolipin biosynthesis II
Shal_2344	PWY-5668	cardiolipin biosynthesis I
Shal_2348	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_2348	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_2348	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_2348	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_2348	PWY-6113	superpathway of mycolate biosynthesis
Shal_2348	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_2348	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_2348	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_2348	PWYG-321	mycolate biosynthesis
Shal_2356	PWY-5686	UMP biosynthesis
Shal_2357	PWY-5022	4-aminobutanoate degradation V
Shal_2357	PWY-6728	methylaspartate cycle
Shal_2357	PWY-7126	ethylene biosynthesis IV
Shal_2376	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_2376	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_2376	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2376	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Shal_2376	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_2376	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_2378	PWY-6543	4-aminobenzoate biosynthesis
Shal_2378	PWY-6722	candicidin biosynthesis
Shal_2379	PWY-7193	pyrimidine ribonucleosides salvage I
Shal_2382	PWY-5663	tetrahydrobiopterin biosynthesis I
Shal_2382	PWY-5664	tetrahydrobiopterin biosynthesis II
Shal_2382	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_2382	PWY-6703	preQ<sub>0</sub> biosynthesis
Shal_2382	PWY-6983	tetrahydrobiopterin biosynthesis III
Shal_2382	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Shal_2387	PWY-5101	L-isoleucine biosynthesis II
Shal_2387	PWY-5103	L-isoleucine biosynthesis III
Shal_2387	PWY-5104	L-isoleucine biosynthesis IV
Shal_2387	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Shal_2387	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Shal_2387	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Shal_2387	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_2388	PWY-5101	L-isoleucine biosynthesis II
Shal_2388	PWY-5103	L-isoleucine biosynthesis III
Shal_2388	PWY-5104	L-isoleucine biosynthesis IV
Shal_2388	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Shal_2388	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Shal_2388	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Shal_2388	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_2392	PWY-4061	glutathione-mediated detoxification I
Shal_2392	PWY-6842	glutathione-mediated detoxification II
Shal_2392	PWY-7112	4-hydroxy-2-nonenal detoxification
Shal_2392	PWY-7533	gliotoxin biosynthesis
Shal_2420	PWY-4041	&gamma;-glutamyl cycle
Shal_2420	PWY-5826	hypoglycin biosynthesis
Shal_2435	PWY-2723	trehalose degradation V
Shal_2435	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Shal_2435	PWY-5661	GDP-glucose biosynthesis
Shal_2435	PWY-5940	streptomycin biosynthesis
Shal_2435	PWY-621	sucrose degradation III (sucrose invertase)
Shal_2435	PWY-622	starch biosynthesis
Shal_2435	PWY-6731	starch degradation III
Shal_2435	PWY-6737	starch degradation V
Shal_2435	PWY-6981	chitin biosynthesis
Shal_2435	PWY-7238	sucrose biosynthesis II
Shal_2435	PWY-7343	UDP-glucose biosynthesis
Shal_2474	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Shal_2475	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_2476	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_2476	PWY-6578	8-amino-7-oxononanoate biosynthesis III
Shal_2476	PWY-7147	8-amino-7-oxononanoate biosynthesis II
Shal_2477	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Shal_2486	PWY-5392	reductive TCA cycle II
Shal_2486	PWY-5537	pyruvate fermentation to acetate V
Shal_2486	PWY-5538	pyruvate fermentation to acetate VI
Shal_2486	PWY-5690	TCA cycle II (plants and fungi)
Shal_2486	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_2486	PWY-6728	methylaspartate cycle
Shal_2486	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2486	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Shal_2487	PWY-5392	reductive TCA cycle II
Shal_2487	PWY-5537	pyruvate fermentation to acetate V
Shal_2487	PWY-5538	pyruvate fermentation to acetate VI
Shal_2487	PWY-5690	TCA cycle II (plants and fungi)
Shal_2487	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_2487	PWY-6728	methylaspartate cycle
Shal_2487	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2487	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Shal_2488	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Shal_2489	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Shal_2490	PWY-3781	aerobic respiration I (cytochrome c)
Shal_2490	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Shal_2490	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_2490	PWY-5690	TCA cycle II (plants and fungi)
Shal_2490	PWY-6728	methylaspartate cycle
Shal_2490	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2490	PWY-7254	TCA cycle VII (acetate-producers)
Shal_2490	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_2491	PWY-3781	aerobic respiration I (cytochrome c)
Shal_2491	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Shal_2491	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_2491	PWY-5690	TCA cycle II (plants and fungi)
Shal_2491	PWY-6728	methylaspartate cycle
Shal_2491	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_2491	PWY-7254	TCA cycle VII (acetate-producers)
Shal_2491	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_2522	PWY-7310	D-glucosaminate degradation
Shal_2543	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_2543	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_2543	PWY-6608	guanosine nucleotides degradation III
Shal_2543	PWY-6609	adenine and adenosine salvage III
Shal_2543	PWY-6611	adenine and adenosine salvage V
Shal_2543	PWY-6620	guanine and guanosine salvage
Shal_2543	PWY-6627	salinosporamide A biosynthesis
Shal_2543	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Shal_2543	PWY-7179	purine deoxyribonucleosides degradation I
Shal_2543	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_2559	PWY-4381	fatty acid biosynthesis initiation I
Shal_2581	PWY-6936	seleno-amino acid biosynthesis
Shal_2592	PWY-5480	pyruvate fermentation to ethanol I
Shal_2592	PWY-5485	pyruvate fermentation to acetate IV
Shal_2592	PWY-5493	reductive monocarboxylic acid cycle
Shal_2595	PWY-5482	pyruvate fermentation to acetate II
Shal_2595	PWY-5485	pyruvate fermentation to acetate IV
Shal_2595	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2596	PWY-1281	sulfoacetaldehyde degradation I
Shal_2596	PWY-5482	pyruvate fermentation to acetate II
Shal_2596	PWY-5485	pyruvate fermentation to acetate IV
Shal_2596	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2596	PWY-6637	sulfolactate degradation II
Shal_2601	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Shal_2601	PWY-6148	tetrahydromethanopterin biosynthesis
Shal_2601	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Shal_2601	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_2630	PWY-6317	galactose degradation I (Leloir pathway)
Shal_2630	PWY-6527	stachyose degradation
Shal_2637	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Shal_2637	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Shal_2637	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Shal_2637	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Shal_2640	PWY-2161	folate polyglutamylation
Shal_2643	PWY-2941	L-lysine biosynthesis II
Shal_2643	PWY-2942	L-lysine biosynthesis III
Shal_2643	PWY-5097	L-lysine biosynthesis VI
Shal_2643	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_2643	PWY-6559	spermidine biosynthesis II
Shal_2643	PWY-6562	norspermidine biosynthesis
Shal_2643	PWY-7153	grixazone biosynthesis
Shal_2643	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_2648	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_2658	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Shal_2658	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Shal_2658	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Shal_2660	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Shal_2670	PWY-1361	benzoyl-CoA degradation I (aerobic)
Shal_2670	PWY-5109	2-methylbutanoate biosynthesis
Shal_2670	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Shal_2670	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Shal_2670	PWY-5177	glutaryl-CoA degradation
Shal_2670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Shal_2670	PWY-6435	4-hydroxybenzoate biosynthesis V
Shal_2670	PWY-6583	pyruvate fermentation to butanol I
Shal_2670	PWY-6863	pyruvate fermentation to hexanol
Shal_2670	PWY-6883	pyruvate fermentation to butanol II
Shal_2670	PWY-6944	androstenedione degradation
Shal_2670	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Shal_2670	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Shal_2670	PWY-7007	methyl ketone biosynthesis
Shal_2670	PWY-7046	4-coumarate degradation (anaerobic)
Shal_2670	PWY-7094	fatty acid salvage
Shal_2670	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Shal_2670	PWY-735	jasmonic acid biosynthesis
Shal_2670	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Shal_2671	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Shal_2671	PWY-6435	4-hydroxybenzoate biosynthesis V
Shal_2671	PWY-6863	pyruvate fermentation to hexanol
Shal_2671	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Shal_2671	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Shal_2671	PWY-6948	sitosterol degradation to androstenedione
Shal_2671	PWY-7094	fatty acid salvage
Shal_2671	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
Shal_2671	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Shal_2671	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Shal_2671	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
Shal_2671	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Shal_2671	PWY-735	jasmonic acid biosynthesis
Shal_2689	PWY-6168	flavin biosynthesis III (fungi)
Shal_2689	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Shal_2692	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2692	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2692	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Shal_2737	PWY-1281	sulfoacetaldehyde degradation I
Shal_2737	PWY-5482	pyruvate fermentation to acetate II
Shal_2737	PWY-5485	pyruvate fermentation to acetate IV
Shal_2737	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2737	PWY-6637	sulfolactate degradation II
Shal_2738	PWY-5482	pyruvate fermentation to acetate II
Shal_2738	PWY-5485	pyruvate fermentation to acetate IV
Shal_2738	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2743	PWY-6857	retinol biosynthesis
Shal_2770	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Shal_2770	PWY-2201	folate transformations I
Shal_2770	PWY-3841	folate transformations II
Shal_2770	PWY-5030	L-histidine degradation III
Shal_2770	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2770	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Shal_2775	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_2778	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2782	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2783	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2785	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2810	PWY-6749	CMP-legionaminate biosynthesis I
Shal_2820	PWY-4381	fatty acid biosynthesis initiation I
Shal_2833	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_2836	PWY-6610	adenine and adenosine salvage IV
Shal_2845	PWY-5988	wound-induced proteolysis I
Shal_2845	PWY-6018	seed germination protein turnover
Shal_2877	PWY-5642	2,4-dinitrotoluene degradation
Shal_2877	PWY-6373	acrylate degradation
Shal_2898	PWY-5839	menaquinol-7 biosynthesis
Shal_2898	PWY-5851	demethylmenaquinol-9 biosynthesis
Shal_2898	PWY-5852	demethylmenaquinol-8 biosynthesis I
Shal_2898	PWY-5853	demethylmenaquinol-6 biosynthesis I
Shal_2898	PWY-5890	menaquinol-10 biosynthesis
Shal_2898	PWY-5891	menaquinol-11 biosynthesis
Shal_2898	PWY-5892	menaquinol-12 biosynthesis
Shal_2898	PWY-5895	menaquinol-13 biosynthesis
Shal_2903	PWY-4381	fatty acid biosynthesis initiation I
Shal_2903	PWY-5743	3-hydroxypropanoate cycle
Shal_2903	PWY-5744	glyoxylate assimilation
Shal_2903	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Shal_2903	PWY-6679	jadomycin biosynthesis
Shal_2903	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_2907	PWY-5074	mevalonate degradation
Shal_2918	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2920	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2928	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_2929	PWY-6825	phosphatidylcholine biosynthesis V
Shal_2941	PWY-7199	pyrimidine deoxyribonucleosides salvage
Shal_2958	PWY-1361	benzoyl-CoA degradation I (aerobic)
Shal_2958	PWY-2361	3-oxoadipate degradation
Shal_2958	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
Shal_2970	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_2970	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_2970	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_2970	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_2970	PWY-6113	superpathway of mycolate biosynthesis
Shal_2970	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_2970	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_2970	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_2970	PWYG-321	mycolate biosynthesis
Shal_2975	PWY-7560	methylerythritol phosphate pathway II
Shal_2986	PWY-2201	folate transformations I
Shal_2986	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_2999	PWY-6700	queuosine biosynthesis
Shal_3005	PWY-6012	acyl carrier protein metabolism I
Shal_3005	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Shal_3010	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Shal_3010	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Shal_3010	PWY-5989	stearate biosynthesis II (bacteria and plants)
Shal_3010	PWY-5994	palmitate biosynthesis I (animals and fungi)
Shal_3010	PWY-6113	superpathway of mycolate biosynthesis
Shal_3010	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Shal_3010	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Shal_3010	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_3010	PWYG-321	mycolate biosynthesis
Shal_3011	PWY-4381	fatty acid biosynthesis initiation I
Shal_3011	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Shal_3011	PWY-723	alkylnitronates degradation
Shal_3011	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Shal_3040	PWY-6019	pseudouridine degradation
Shal_3043	PWY-4321	L-glutamate degradation IV
Shal_3052	PWY-5686	UMP biosynthesis
Shal_3080	PWY-6891	thiazole biosynthesis II (Bacillus)
Shal_3080	PWY-6892	thiazole biosynthesis I (E. coli)
Shal_3080	PWY-7560	methylerythritol phosphate pathway II
Shal_3082	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Shal_3082	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Shal_3082	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Shal_3084	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_3084	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_3111	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_3111	PWY-3162	L-tryptophan degradation V (side chain pathway)
Shal_3111	PWY-5057	L-valine degradation II
Shal_3111	PWY-5076	L-leucine degradation III
Shal_3111	PWY-5078	L-isoleucine degradation II
Shal_3111	PWY-5079	L-phenylalanine degradation III
Shal_3111	PWY-5082	L-methionine degradation III
Shal_3111	PWY-5480	pyruvate fermentation to ethanol I
Shal_3111	PWY-5486	pyruvate fermentation to ethanol II
Shal_3111	PWY-5751	phenylethanol biosynthesis
Shal_3111	PWY-6028	acetoin degradation
Shal_3111	PWY-6313	serotonin degradation
Shal_3111	PWY-6333	acetaldehyde biosynthesis I
Shal_3111	PWY-6342	noradrenaline and adrenaline degradation
Shal_3111	PWY-6587	pyruvate fermentation to ethanol III
Shal_3111	PWY-6802	salidroside biosynthesis
Shal_3111	PWY-6871	3-methylbutanol biosynthesis
Shal_3111	PWY-7013	L-1,2-propanediol degradation
Shal_3111	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_3111	PWY-7118	chitin degradation to ethanol
Shal_3111	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Shal_3111	PWY-7557	dehydrodiconiferyl alcohol degradation
Shal_3133	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_3133	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_3133	PWY-6608	guanosine nucleotides degradation III
Shal_3133	PWY-6609	adenine and adenosine salvage III
Shal_3133	PWY-6611	adenine and adenosine salvage V
Shal_3133	PWY-6620	guanine and guanosine salvage
Shal_3133	PWY-6627	salinosporamide A biosynthesis
Shal_3133	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Shal_3133	PWY-7179	purine deoxyribonucleosides degradation I
Shal_3133	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_3134	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Shal_3135	PWY-7181	pyrimidine deoxyribonucleosides degradation
Shal_3136	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Shal_3151	PWY-1042	glycolysis IV (plant cytosol)
Shal_3151	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_3151	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_3151	PWY-7003	glycerol degradation to butanol
Shal_3152	PWY-6749	CMP-legionaminate biosynthesis I
Shal_3153	PWY-6614	tetrahydrofolate biosynthesis
Shal_3161	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_3161	PWY-5686	UMP biosynthesis
Shal_3161	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_3162	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_3162	PWY-5686	UMP biosynthesis
Shal_3162	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_3163	PWY-2941	L-lysine biosynthesis II
Shal_3163	PWY-2942	L-lysine biosynthesis III
Shal_3163	PWY-5097	L-lysine biosynthesis VI
Shal_3188	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Shal_3188	PWY-6153	autoinducer AI-2 biosynthesis I
Shal_3188	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Shal_3200	PWY-6654	phosphopantothenate biosynthesis III
Shal_3206	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_3206	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_3212	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_3214	PWY-7560	methylerythritol phosphate pathway II
Shal_3231	PWY-5381	pyridine nucleotide cycling (plants)
Shal_3231	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Shal_3238	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Shal_3238	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Shal_3240	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Shal_3240	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Shal_3241	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Shal_3241	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Shal_3241	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Shal_3291	PWY-5686	UMP biosynthesis
Shal_3314	PWY-5497	purine nucleobases degradation II (anaerobic)
Shal_3314	PWY-6606	guanosine nucleotides degradation II
Shal_3314	PWY-6608	guanosine nucleotides degradation III
Shal_3314	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Shal_3328	PWY-4261	glycerol degradation I
Shal_3329	PWY-4261	glycerol degradation I
Shal_3329	PWY-6118	glycerol-3-phosphate shuttle
Shal_3329	PWY-6952	glycerophosphodiester degradation
Shal_3330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_3330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_3335	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_3351	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_3397	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Shal_3397	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Shal_3453	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Shal_3453	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Shal_3453	PWY-6268	adenosylcobalamin salvage from cobalamin
Shal_3453	PWY-6269	adenosylcobalamin salvage from cobinamide II
Shal_3455	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Shal_3455	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Shal_3455	PWY-6269	adenosylcobalamin salvage from cobinamide II
Shal_3456	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Shal_3456	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Shal_3456	PWY-6269	adenosylcobalamin salvage from cobinamide II
Shal_3458	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Shal_3458	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Shal_3458	PWY-6269	adenosylcobalamin salvage from cobinamide II
Shal_3462	PWY-2201	folate transformations I
Shal_3462	PWY-3841	folate transformations II
Shal_3465	PWY-5704	urea degradation II
Shal_3466	PWY-5704	urea degradation II
Shal_3467	PWY-5704	urea degradation II
Shal_3472	PWY-2201	folate transformations I
Shal_3472	PWY-3841	folate transformations II
Shal_3474	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_3477	PWY-6609	adenine and adenosine salvage III
Shal_3477	PWY-6611	adenine and adenosine salvage V
Shal_3477	PWY-7179	purine deoxyribonucleosides degradation I
Shal_3477	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_3530	PWY-5340	sulfate activation for sulfonation
Shal_3532	PWY-5278	sulfite oxidation III
Shal_3532	PWY-5340	sulfate activation for sulfonation
Shal_3532	PWY-6683	sulfate reduction III (assimilatory)
Shal_3532	PWY-6932	selenate reduction
Shal_3533	PWY-5278	sulfite oxidation III
Shal_3533	PWY-5340	sulfate activation for sulfonation
Shal_3533	PWY-6683	sulfate reduction III (assimilatory)
Shal_3533	PWY-6932	selenate reduction
Shal_3534	PWY-5194	siroheme biosynthesis
Shal_3534	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Shal_3535	PWY-6803	phosphatidylcholine acyl editing
Shal_3535	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Shal_3535	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Shal_3535	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Shal_3542	PWY-6683	sulfate reduction III (assimilatory)
Shal_3543	PWY-6683	sulfate reduction III (assimilatory)
Shal_3554	PWY-3781	aerobic respiration I (cytochrome c)
Shal_3554	PWY-4521	arsenite oxidation I (respiratory)
Shal_3554	PWY-6692	Fe(II) oxidation
Shal_3554	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_3585	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Shal_3585	PWY-6853	ethylene biosynthesis II (microbes)
Shal_3585	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Shal_3601	PWY-5723	Rubisco shunt
Shal_3613	PWY-5958	acridone alkaloid biosynthesis
Shal_3613	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Shal_3613	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Shal_3622	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Shal_3622	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Shal_3622	PWY-7185	UTP and CTP dephosphorylation I
Shal_3622	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Shal_3622	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Shal_3630	PWY-3781	aerobic respiration I (cytochrome c)
Shal_3630	PWY-6692	Fe(II) oxidation
Shal_3630	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Shal_3630	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_3635	PWY-2781	<i>cis</i>-zeatin biosynthesis
Shal_3639	PWY-6938	NADH repair
Shal_3643	PWY-5669	phosphatidylethanolamine biosynthesis I
Shal_3669	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Shal_3680	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_3689	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_3692	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_3692	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_3701	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Shal_3701	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Shal_3741	PWY-5674	nitrate reduction IV (dissimilatory)
Shal_3745	PWY-6902	chitin degradation II
Shal_3798	PWY-5667	CDP-diacylglycerol biosynthesis I
Shal_3798	PWY-5981	CDP-diacylglycerol biosynthesis III
Shal_3798	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Shal_3798	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Shal_3806	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Shal_3806	PWY-2161	folate polyglutamylation
Shal_3806	PWY-2201	folate transformations I
Shal_3806	PWY-3841	folate transformations II
Shal_3821	PWY-1042	glycolysis IV (plant cytosol)
Shal_3821	PWY-5484	glycolysis II (from fructose 6-phosphate)
Shal_3821	PWY-6901	superpathway of glucose and xylose degradation
Shal_3821	PWY-7003	glycerol degradation to butanol
Shal_3869	PWY-4202	arsenate detoxification I (glutaredoxin)
Shal_3869	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Shal_3869	PWY-6608	guanosine nucleotides degradation III
Shal_3869	PWY-6609	adenine and adenosine salvage III
Shal_3869	PWY-6611	adenine and adenosine salvage V
Shal_3869	PWY-6620	guanine and guanosine salvage
Shal_3869	PWY-6627	salinosporamide A biosynthesis
Shal_3869	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Shal_3869	PWY-7179	purine deoxyribonucleosides degradation I
Shal_3869	PWY-7179-1	purine deoxyribonucleosides degradation
Shal_3875	PWY-381	nitrate reduction II (assimilatory)
Shal_3875	PWY-5675	nitrate reduction V (assimilatory)
Shal_3875	PWY-6549	L-glutamine biosynthesis III
Shal_3875	PWY-6963	ammonia assimilation cycle I
Shal_3875	PWY-6964	ammonia assimilation cycle II
Shal_3879	PWY-5839	menaquinol-7 biosynthesis
Shal_3879	PWY-5844	menaquinol-9 biosynthesis
Shal_3879	PWY-5849	menaquinol-6 biosynthesis
Shal_3879	PWY-5890	menaquinol-10 biosynthesis
Shal_3879	PWY-5891	menaquinol-11 biosynthesis
Shal_3879	PWY-5892	menaquinol-12 biosynthesis
Shal_3879	PWY-5895	menaquinol-13 biosynthesis
Shal_3888	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_3888	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Shal_3894	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_3896	PWY-3781	aerobic respiration I (cytochrome c)
Shal_3896	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Shal_3896	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_3896	PWY-5690	TCA cycle II (plants and fungi)
Shal_3896	PWY-6728	methylaspartate cycle
Shal_3896	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_3896	PWY-7254	TCA cycle VII (acetate-producers)
Shal_3896	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_3897	PWY-3781	aerobic respiration I (cytochrome c)
Shal_3897	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Shal_3897	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_3897	PWY-5690	TCA cycle II (plants and fungi)
Shal_3897	PWY-6728	methylaspartate cycle
Shal_3897	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Shal_3897	PWY-7254	TCA cycle VII (acetate-producers)
Shal_3897	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Shal_3903	PWY-5988	wound-induced proteolysis I
Shal_3903	PWY-6018	seed germination protein turnover
Shal_3912	PWY-2941	L-lysine biosynthesis II
Shal_3912	PWY-5097	L-lysine biosynthesis VI
Shal_3913	PWY-2941	L-lysine biosynthesis II
Shal_3913	PWY-2942	L-lysine biosynthesis III
Shal_3913	PWY-5097	L-lysine biosynthesis VI
Shal_3917	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_3917	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Shal_3918	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Shal_3918	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Shal_3939	PWY-6832	2-aminoethylphosphonate degradation II
Shal_3941	PWY-5101	L-isoleucine biosynthesis II
Shal_3941	PWY-5103	L-isoleucine biosynthesis III
Shal_3941	PWY-5104	L-isoleucine biosynthesis IV
Shal_3941	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_3942	PWY-5057	L-valine degradation II
Shal_3942	PWY-5076	L-leucine degradation III
Shal_3942	PWY-5078	L-isoleucine degradation II
Shal_3942	PWY-5101	L-isoleucine biosynthesis II
Shal_3942	PWY-5103	L-isoleucine biosynthesis III
Shal_3942	PWY-5104	L-isoleucine biosynthesis IV
Shal_3942	PWY-5108	L-isoleucine biosynthesis V
Shal_3944	PWY-5101	L-isoleucine biosynthesis II
Shal_3944	PWY-5103	L-isoleucine biosynthesis III
Shal_3944	PWY-5104	L-isoleucine biosynthesis IV
Shal_3944	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Shal_3944	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Shal_3944	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Shal_3944	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_3945	PWY-5101	L-isoleucine biosynthesis II
Shal_3945	PWY-5103	L-isoleucine biosynthesis III
Shal_3945	PWY-5104	L-isoleucine biosynthesis IV
Shal_3945	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_3964	PWY-5057	L-valine degradation II
Shal_3964	PWY-5076	L-leucine degradation III
Shal_3964	PWY-5078	L-isoleucine degradation II
Shal_3964	PWY-5101	L-isoleucine biosynthesis II
Shal_3964	PWY-5103	L-isoleucine biosynthesis III
Shal_3964	PWY-5104	L-isoleucine biosynthesis IV
Shal_3964	PWY-5108	L-isoleucine biosynthesis V
Shal_4032	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_4033	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_4033	PWY-3162	L-tryptophan degradation V (side chain pathway)
Shal_4033	PWY-5057	L-valine degradation II
Shal_4033	PWY-5076	L-leucine degradation III
Shal_4033	PWY-5078	L-isoleucine degradation II
Shal_4033	PWY-5079	L-phenylalanine degradation III
Shal_4033	PWY-5082	L-methionine degradation III
Shal_4033	PWY-5480	pyruvate fermentation to ethanol I
Shal_4033	PWY-5486	pyruvate fermentation to ethanol II
Shal_4033	PWY-5751	phenylethanol biosynthesis
Shal_4033	PWY-6028	acetoin degradation
Shal_4033	PWY-6313	serotonin degradation
Shal_4033	PWY-6333	acetaldehyde biosynthesis I
Shal_4033	PWY-6342	noradrenaline and adrenaline degradation
Shal_4033	PWY-6587	pyruvate fermentation to ethanol III
Shal_4033	PWY-6802	salidroside biosynthesis
Shal_4033	PWY-6871	3-methylbutanol biosynthesis
Shal_4033	PWY-7013	L-1,2-propanediol degradation
Shal_4033	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Shal_4033	PWY-7118	chitin degradation to ethanol
Shal_4033	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Shal_4033	PWY-7557	dehydrodiconiferyl alcohol degradation
Shal_4035	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Shal_4070	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Shal_4075	PWY-181	photorespiration
Shal_4076	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Shal_4076	PWY-5723	Rubisco shunt
Shal_4081	PWY-6164	3-dehydroquinate biosynthesis I
Shal_4082	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Shal_4089	PWY-4983	L-citrulline-nitric oxide cycle
Shal_4089	PWY-4984	urea cycle
Shal_4089	PWY-5	canavanine biosynthesis
Shal_4089	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_4089	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_4090	PWY-4983	L-citrulline-nitric oxide cycle
Shal_4090	PWY-4984	urea cycle
Shal_4090	PWY-5	canavanine biosynthesis
Shal_4090	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_4090	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_4091	PWY-4981	L-proline biosynthesis II (from arginine)
Shal_4091	PWY-4984	urea cycle
Shal_4091	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_4092	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_4092	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_4093	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_4093	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Shal_4094	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Shal_4095	PWY-1622	formaldehyde assimilation I (serine pathway)
Shal_4095	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Shal_4095	PWY-5913	TCA cycle VI (obligate autotrophs)
Shal_4095	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Shal_4095	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Shal_4095	PWY-6549	L-glutamine biosynthesis III
Shal_4095	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Shal_4095	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Shal_4095	PWY-7124	ethylene biosynthesis V (engineered)
Shal_4149	PWY-3961	phosphopantothenate biosynthesis II
Shal_4150	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Shal_4150	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Shal_4151	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_4151	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_4153	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Shal_4153	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Shal_4157	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Shal_4178	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Shal_4178	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Shal_4187	PWY-6167	flavin biosynthesis II (archaea)
Shal_4187	PWY-6168	flavin biosynthesis III (fungi)
Shal_4190	PWY-6823	molybdenum cofactor biosynthesis
Shal_4191	PWY-6823	molybdenum cofactor biosynthesis
Shal_4193	PWY-5506	methanol oxidation to formaldehyde IV
Shal_4216	PWY-7378	aminopropanol phosphate biosynthesis II
Shal_4242	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_4273	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Shal_4273	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Shal_4285	PWY-6749	CMP-legionaminate biosynthesis I
Shal_4288	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Shal_4294	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Shal_4296	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis