Spea_0017	PWY-5136	fatty acid β-oxidation II (peroxisome)
Spea_0017	PWY-6435	4-hydroxybenzoate biosynthesis V
Spea_0017	PWY-6863	pyruvate fermentation to hexanol
Spea_0017	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Spea_0017	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Spea_0017	PWY-6948	sitosterol degradation to androstenedione
Spea_0017	PWY-7094	fatty acid salvage
Spea_0017	PWY-7288	fatty acid β-oxidation (peroxisome, yeast)
Spea_0017	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Spea_0017	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Spea_0017	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
Spea_0017	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Spea_0017	PWY-735	jasmonic acid biosynthesis
Spea_0018	PWY-1361	benzoyl-CoA degradation I (aerobic)
Spea_0018	PWY-5109	2-methylbutanoate biosynthesis
Spea_0018	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Spea_0018	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
Spea_0018	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Spea_0018	PWY-5177	glutaryl-CoA degradation
Spea_0018	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Spea_0018	PWY-6435	4-hydroxybenzoate biosynthesis V
Spea_0018	PWY-6583	pyruvate fermentation to butanol I
Spea_0018	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
Spea_0018	PWY-6863	pyruvate fermentation to hexanol
Spea_0018	PWY-6883	pyruvate fermentation to butanol II
Spea_0018	PWY-6944	androstenedione degradation
Spea_0018	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Spea_0018	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Spea_0018	PWY-7007	methyl ketone biosynthesis
Spea_0018	PWY-7046	4-coumarate degradation (anaerobic)
Spea_0018	PWY-7094	fatty acid salvage
Spea_0018	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Spea_0018	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
Spea_0018	PWY-735	jasmonic acid biosynthesis
Spea_0018	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Spea_0038	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Spea_0038	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Spea_0040	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Spea_0049	PWY-6749	CMP-legionaminate biosynthesis I
Spea_0049	PWY-7131	CMP-legionaminate biosynthesis II
Spea_0052	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_0052	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_0080	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_0106	PWY-7378	aminopropanol phosphate biosynthesis II
Spea_0125	PWY-5506	methanol oxidation to formaldehyde IV
Spea_0127	PWY-6823	molybdenum cofactor biosynthesis
Spea_0128	PWY-6823	molybdenum cofactor biosynthesis
Spea_0131	PWY-6167	flavin biosynthesis II (archaea)
Spea_0131	PWY-6168	flavin biosynthesis III (fungi)
Spea_0140	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_0140	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Spea_0161	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Spea_0162	PWY-5996	oleate biosynthesis II (animals and fungi)
Spea_0165	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_0165	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_0167	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_0167	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_0168	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Spea_0168	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Spea_0169	PWY-3961	phosphopantothenate biosynthesis II
Spea_0225	PWY-1622	formaldehyde assimilation I (serine pathway)
Spea_0225	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Spea_0225	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_0225	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_0225	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Spea_0225	PWY-6549	L-glutamine biosynthesis III
Spea_0225	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Spea_0225	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Spea_0225	PWY-7124	ethylene biosynthesis V (engineered)
Spea_0226	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_0227	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_0227	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_0228	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_0228	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_0229	PWY-4981	L-proline biosynthesis II (from arginine)
Spea_0229	PWY-4984	urea cycle
Spea_0229	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_0230	PWY-4983	L-citrulline-nitric oxide cycle
Spea_0230	PWY-4984	urea cycle
Spea_0230	PWY-5	canavanine biosynthesis
Spea_0230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_0230	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_0231	PWY-4983	L-citrulline-nitric oxide cycle
Spea_0231	PWY-4984	urea cycle
Spea_0231	PWY-5	canavanine biosynthesis
Spea_0231	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_0231	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_0238	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Spea_0239	PWY-6164	3-dehydroquinate biosynthesis I
Spea_0244	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Spea_0244	PWY-5723	Rubisco shunt
Spea_0245	PWY-181	photorespiration
Spea_0250	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
Spea_0267	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_0269	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_0269	PWY-3162	L-tryptophan degradation V (side chain pathway)
Spea_0269	PWY-5057	L-valine degradation II
Spea_0269	PWY-5076	L-leucine degradation III
Spea_0269	PWY-5078	L-isoleucine degradation II
Spea_0269	PWY-5079	L-phenylalanine degradation III
Spea_0269	PWY-5082	L-methionine degradation III
Spea_0269	PWY-5480	pyruvate fermentation to ethanol I
Spea_0269	PWY-5486	pyruvate fermentation to ethanol II
Spea_0269	PWY-5751	phenylethanol biosynthesis
Spea_0269	PWY-6028	acetoin degradation
Spea_0269	PWY-6313	serotonin degradation
Spea_0269	PWY-6333	acetaldehyde biosynthesis I
Spea_0269	PWY-6342	noradrenaline and adrenaline degradation
Spea_0269	PWY-6587	pyruvate fermentation to ethanol III
Spea_0269	PWY-6802	salidroside biosynthesis
Spea_0269	PWY-6871	3-methylbutanol biosynthesis
Spea_0269	PWY-7013	L-1,2-propanediol degradation
Spea_0269	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_0269	PWY-7118	chitin degradation to ethanol
Spea_0269	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Spea_0269	PWY-7557	dehydrodiconiferyl alcohol degradation
Spea_0270	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_0305	PWY-7310	D-glucosaminate degradation
Spea_0327	PWY-5057	L-valine degradation II
Spea_0327	PWY-5076	L-leucine degradation III
Spea_0327	PWY-5078	L-isoleucine degradation II
Spea_0327	PWY-5101	L-isoleucine biosynthesis II
Spea_0327	PWY-5103	L-isoleucine biosynthesis III
Spea_0327	PWY-5104	L-isoleucine biosynthesis IV
Spea_0327	PWY-5108	L-isoleucine biosynthesis V
Spea_0344	PWY-5101	L-isoleucine biosynthesis II
Spea_0344	PWY-5103	L-isoleucine biosynthesis III
Spea_0344	PWY-5104	L-isoleucine biosynthesis IV
Spea_0344	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_0345	PWY-5101	L-isoleucine biosynthesis II
Spea_0345	PWY-5103	L-isoleucine biosynthesis III
Spea_0345	PWY-5104	L-isoleucine biosynthesis IV
Spea_0345	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Spea_0345	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Spea_0345	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Spea_0345	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_0347	PWY-5057	L-valine degradation II
Spea_0347	PWY-5076	L-leucine degradation III
Spea_0347	PWY-5078	L-isoleucine degradation II
Spea_0347	PWY-5101	L-isoleucine biosynthesis II
Spea_0347	PWY-5103	L-isoleucine biosynthesis III
Spea_0347	PWY-5104	L-isoleucine biosynthesis IV
Spea_0347	PWY-5108	L-isoleucine biosynthesis V
Spea_0348	PWY-5101	L-isoleucine biosynthesis II
Spea_0348	PWY-5103	L-isoleucine biosynthesis III
Spea_0348	PWY-5104	L-isoleucine biosynthesis IV
Spea_0348	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_0350	PWY-6832	2-aminoethylphosphonate degradation II
Spea_0372	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_0372	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Spea_0373	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_0373	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Spea_0377	PWY-2941	L-lysine biosynthesis II
Spea_0377	PWY-2942	L-lysine biosynthesis III
Spea_0377	PWY-5097	L-lysine biosynthesis VI
Spea_0378	PWY-2941	L-lysine biosynthesis II
Spea_0378	PWY-5097	L-lysine biosynthesis VI
Spea_0388	PWY-5988	wound-induced proteolysis I
Spea_0388	PWY-6018	seed germination protein turnover
Spea_0394	PWY-3781	aerobic respiration I (cytochrome c)
Spea_0394	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Spea_0394	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_0394	PWY-5690	TCA cycle II (plants and fungi)
Spea_0394	PWY-6728	methylaspartate cycle
Spea_0394	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_0394	PWY-7254	TCA cycle VII (acetate-producers)
Spea_0394	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_0395	PWY-3781	aerobic respiration I (cytochrome c)
Spea_0395	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Spea_0395	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_0395	PWY-5690	TCA cycle II (plants and fungi)
Spea_0395	PWY-6728	methylaspartate cycle
Spea_0395	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_0395	PWY-7254	TCA cycle VII (acetate-producers)
Spea_0395	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_0397	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_0407	PWY-6502	oxidized GTP and dGTP detoxification
Spea_0415	PWY-5316	nicotine biosynthesis
Spea_0415	PWY-5381	pyridine nucleotide cycling (plants)
Spea_0415	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Spea_0415	PWY-7342	superpathway of nicotine biosynthesis
Spea_0419	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_0419	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_0419	PWY-7560	methylerythritol phosphate pathway II
Spea_0421	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Spea_0421	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Spea_0425	PWY-5747	2-methylcitrate cycle II
Spea_0427	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Spea_0427	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Spea_0431	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Spea_0431	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Spea_0431	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Spea_0432	PWY-6123	inosine-5'-phosphate biosynthesis I
Spea_0432	PWY-6124	inosine-5'-phosphate biosynthesis II
Spea_0432	PWY-7234	inosine-5'-phosphate biosynthesis III
Spea_0450	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_0460	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_0460	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_0460	PWY-6608	guanosine nucleotides degradation III
Spea_0460	PWY-6609	adenine and adenosine salvage III
Spea_0460	PWY-6611	adenine and adenosine salvage V
Spea_0460	PWY-6620	guanine and guanosine salvage
Spea_0460	PWY-6627	salinosporamide A biosynthesis
Spea_0460	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Spea_0460	PWY-7179	purine deoxyribonucleosides degradation I
Spea_0460	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_0479	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_0503	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_0534	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Spea_0534	PWY-6416	quinate degradation II
Spea_0534	PWY-6707	gallate biosynthesis
Spea_0561	PWY-2941	L-lysine biosynthesis II
Spea_0561	PWY-2942	L-lysine biosynthesis III
Spea_0561	PWY-5097	L-lysine biosynthesis VI
Spea_0561	PWY-6559	spermidine biosynthesis II
Spea_0561	PWY-6562	norspermidine biosynthesis
Spea_0561	PWY-7153	grixazone biosynthesis
Spea_0562	PWY-2201	folate transformations I
Spea_0562	PWY-3841	folate transformations II
Spea_0576	PWY-2723	trehalose degradation V
Spea_0576	PWY-6317	galactose degradation I (Leloir pathway)
Spea_0576	PWY-6737	starch degradation V
Spea_0577	PWY-3821	galactose degradation III
Spea_0577	PWY-6317	galactose degradation I (Leloir pathway)
Spea_0577	PWY-6527	stachyose degradation
Spea_0579	PWY-6807	xyloglucan degradation II (exoglucanase)
Spea_0580	PWY-6807	xyloglucan degradation II (exoglucanase)
Spea_0598	PWY-5491	diethylphosphate degradation
Spea_0605	PWY-4381	fatty acid biosynthesis initiation I
Spea_0605	PWY-5743	3-hydroxypropanoate cycle
Spea_0605	PWY-5744	glyoxylate assimilation
Spea_0605	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Spea_0605	PWY-6679	jadomycin biosynthesis
Spea_0605	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_0608	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Spea_0608	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Spea_0635	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_0635	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_0635	PWY-6608	guanosine nucleotides degradation III
Spea_0635	PWY-6609	adenine and adenosine salvage III
Spea_0635	PWY-6611	adenine and adenosine salvage V
Spea_0635	PWY-6620	guanine and guanosine salvage
Spea_0635	PWY-6627	salinosporamide A biosynthesis
Spea_0635	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Spea_0635	PWY-7179	purine deoxyribonucleosides degradation I
Spea_0635	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_0638	PWY-5506	methanol oxidation to formaldehyde IV
Spea_0653	PWY-6683	sulfate reduction III (assimilatory)
Spea_0654	PWY-6683	sulfate reduction III (assimilatory)
Spea_0661	PWY-6803	phosphatidylcholine acyl editing
Spea_0661	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Spea_0661	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Spea_0661	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Spea_0662	PWY-5194	siroheme biosynthesis
Spea_0662	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Spea_0663	PWY-5278	sulfite oxidation III
Spea_0663	PWY-5340	sulfate activation for sulfonation
Spea_0663	PWY-6683	sulfate reduction III (assimilatory)
Spea_0663	PWY-6932	selenate reduction
Spea_0664	PWY-5278	sulfite oxidation III
Spea_0664	PWY-5340	sulfate activation for sulfonation
Spea_0664	PWY-6683	sulfate reduction III (assimilatory)
Spea_0664	PWY-6932	selenate reduction
Spea_0666	PWY-5340	sulfate activation for sulfonation
Spea_0684	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Spea_0684	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Spea_0688	PWY-6599	guanine and guanosine salvage II
Spea_0688	PWY-6609	adenine and adenosine salvage III
Spea_0688	PWY-6610	adenine and adenosine salvage IV
Spea_0688	PWY-6620	guanine and guanosine salvage
Spea_0694	PWY-6654	phosphopantothenate biosynthesis III
Spea_0695	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_0695	PWY-6148	tetrahydromethanopterin biosynthesis
Spea_0695	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Spea_0695	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_0700	PWY-5988	wound-induced proteolysis I
Spea_0700	PWY-6018	seed germination protein turnover
Spea_0705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Spea_0705	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Spea_0705	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Spea_0705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Spea_0731	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_0735	PWY-2941	L-lysine biosynthesis II
Spea_0735	PWY-2942	L-lysine biosynthesis III
Spea_0735	PWY-5097	L-lysine biosynthesis VI
Spea_0735	PWY-6559	spermidine biosynthesis II
Spea_0735	PWY-6562	norspermidine biosynthesis
Spea_0735	PWY-7153	grixazone biosynthesis
Spea_0752	PWY-4261	glycerol degradation I
Spea_0752	PWY-6118	glycerol-3-phosphate shuttle
Spea_0752	PWY-6952	glycerophosphodiester degradation
Spea_0754	PWY-1881	formate oxidation to CO<sub>2</sub>
Spea_0754	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_0754	PWY-6696	oxalate degradation III
Spea_0760	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Spea_0760	PWY-6855	chitin degradation I (archaea)
Spea_0760	PWY-6906	chitin derivatives degradation
Spea_0767	PWY-6823	molybdenum cofactor biosynthesis
Spea_0767	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_0767	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_0767	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Spea_0787	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Spea_0787	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Spea_0788	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Spea_0788	PWY-5723	Rubisco shunt
Spea_0788	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_0788	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_0788	PWY-6901	superpathway of glucose and xylose degradation
Spea_0788	PWY-7560	methylerythritol phosphate pathway II
Spea_0789	PWY-1042	glycolysis IV (plant cytosol)
Spea_0789	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_0789	PWY-6901	superpathway of glucose and xylose degradation
Spea_0789	PWY-7003	glycerol degradation to butanol
Spea_0790	PWY-1042	glycolysis IV (plant cytosol)
Spea_0790	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_0790	PWY-6886	1-butanol autotrophic biosynthesis
Spea_0790	PWY-6901	superpathway of glucose and xylose degradation
Spea_0790	PWY-7003	glycerol degradation to butanol
Spea_0791	PWY-1042	glycolysis IV (plant cytosol)
Spea_0791	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Spea_0791	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_0791	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_0791	PWY-7385	1,3-propanediol biosynthesis (engineered)
Spea_0816	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Spea_0816	PWY-5723	Rubisco shunt
Spea_0823	PWY-4061	glutathione-mediated detoxification I
Spea_0823	PWY-6842	glutathione-mediated detoxification II
Spea_0823	PWY-7112	4-hydroxy-2-nonenal detoxification
Spea_0831	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_0837	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_0837	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_0837	PWY-6164	3-dehydroquinate biosynthesis I
Spea_0850	PWY-1622	formaldehyde assimilation I (serine pathway)
Spea_0850	PWY-5392	reductive TCA cycle II
Spea_0850	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_0850	PWY-5690	TCA cycle II (plants and fungi)
Spea_0850	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_0850	PWY-6728	methylaspartate cycle
Spea_0850	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_0850	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Spea_0850	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_0857	PWY-3841	folate transformations II
Spea_0857	PWY-6614	tetrahydrofolate biosynthesis
Spea_0910	PWY-5988	wound-induced proteolysis I
Spea_0910	PWY-6018	seed germination protein turnover
Spea_0934	PWY-5692	allantoin degradation to glyoxylate II
Spea_0934	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Spea_0935	PWY-5642	2,4-dinitrotoluene degradation
Spea_0935	PWY-6373	acrylate degradation
Spea_0941	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_0941	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_0945	PWY-381	nitrate reduction II (assimilatory)
Spea_0945	PWY-5675	nitrate reduction V (assimilatory)
Spea_0945	PWY-6549	L-glutamine biosynthesis III
Spea_0945	PWY-6963	ammonia assimilation cycle I
Spea_0945	PWY-6964	ammonia assimilation cycle II
Spea_0955	PWY-3781	aerobic respiration I (cytochrome c)
Spea_0955	PWY-4521	arsenite oxidation I (respiratory)
Spea_0955	PWY-6692	Fe(II) oxidation
Spea_0955	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_0956	PWY-3781	aerobic respiration I (cytochrome c)
Spea_0956	PWY-4521	arsenite oxidation I (respiratory)
Spea_0956	PWY-6692	Fe(II) oxidation
Spea_0956	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_0965	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_0965	PWY-6148	tetrahydromethanopterin biosynthesis
Spea_0965	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Spea_0965	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_0966	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_0966	PWY-6148	tetrahydromethanopterin biosynthesis
Spea_0966	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Spea_0966	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_0974	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_0975	PWY-5686	UMP biosynthesis
Spea_0989	PWY-5491	diethylphosphate degradation
Spea_1001	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Spea_1001	PWY-6153	autoinducer AI-2 biosynthesis I
Spea_1001	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Spea_1007	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Spea_1007	PWY-7494	choline degradation IV
Spea_1024	PWY-3841	folate transformations II
Spea_1024	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_1024	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_1024	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_1024	PWY-7199	pyrimidine deoxyribonucleosides salvage
Spea_1024	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_1030	PWY-5316	nicotine biosynthesis
Spea_1030	PWY-7342	superpathway of nicotine biosynthesis
Spea_1041	PWY-6012	acyl carrier protein metabolism I
Spea_1041	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Spea_1042	PWY-0	putrescine degradation III
Spea_1042	PWY-6117	spermine and spermidine degradation I
Spea_1051	PWY-6829	tRNA methylation (yeast)
Spea_1051	PWY-7285	methylwyosine biosynthesis
Spea_1051	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Spea_1053	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_1053	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_1053	PWY-6164	3-dehydroquinate biosynthesis I
Spea_1054	PWY-3461	L-tyrosine biosynthesis II
Spea_1054	PWY-3462	L-phenylalanine biosynthesis II
Spea_1054	PWY-6120	L-tyrosine biosynthesis III
Spea_1054	PWY-6627	salinosporamide A biosynthesis
Spea_1054	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Spea_1059	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_1059	PWY-3461	L-tyrosine biosynthesis II
Spea_1059	PWY-3462	L-phenylalanine biosynthesis II
Spea_1059	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_1059	PWY-6120	L-tyrosine biosynthesis III
Spea_1059	PWY-6627	salinosporamide A biosynthesis
Spea_1059	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Spea_1066	PWY-2941	L-lysine biosynthesis II
Spea_1066	PWY-2942	L-lysine biosynthesis III
Spea_1066	PWY-5097	L-lysine biosynthesis VI
Spea_1066	PWY-6559	spermidine biosynthesis II
Spea_1066	PWY-6562	norspermidine biosynthesis
Spea_1066	PWY-7153	grixazone biosynthesis
Spea_1067	PWY-702	L-methionine biosynthesis II
Spea_1073	PWY-3801	sucrose degradation II (sucrose synthase)
Spea_1073	PWY-5054	sorbitol biosynthesis I
Spea_1073	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Spea_1073	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Spea_1073	PWY-5659	GDP-mannose biosynthesis
Spea_1073	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_1073	PWY-621	sucrose degradation III (sucrose invertase)
Spea_1073	PWY-622	starch biosynthesis
Spea_1073	PWY-6531	mannitol cycle
Spea_1073	PWY-6981	chitin biosynthesis
Spea_1073	PWY-7238	sucrose biosynthesis II
Spea_1073	PWY-7347	sucrose biosynthesis III
Spea_1073	PWY-7385	1,3-propanediol biosynthesis (engineered)
Spea_1074	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Spea_1074	PWY-5723	Rubisco shunt
Spea_1082	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Spea_1082	PWY-6167	flavin biosynthesis II (archaea)
Spea_1082	PWY-6168	flavin biosynthesis III (fungi)
Spea_1086	PWY-7560	methylerythritol phosphate pathway II
Spea_1100	PWY-6902	chitin degradation II
Spea_1102	PWY-6906	chitin derivatives degradation
Spea_1102	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Spea_1102	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Spea_1122	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Spea_1126	PWY-3341	L-proline biosynthesis III
Spea_1126	PWY-4981	L-proline biosynthesis II (from arginine)
Spea_1126	PWY-6344	L-ornithine degradation II (Stickland reaction)
Spea_1127	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_1144	PWY-5491	diethylphosphate degradation
Spea_1145	PWY-5491	diethylphosphate degradation
Spea_1160	PWY-1622	formaldehyde assimilation I (serine pathway)
Spea_1160	PWY-181	photorespiration
Spea_1160	PWY-2161	folate polyglutamylation
Spea_1160	PWY-2201	folate transformations I
Spea_1160	PWY-3661	glycine betaine degradation I
Spea_1160	PWY-3661-1	glycine betaine degradation II (mammalian)
Spea_1160	PWY-3841	folate transformations II
Spea_1160	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_1163	PWY-6167	flavin biosynthesis II (archaea)
Spea_1163	PWY-6168	flavin biosynthesis III (fungi)
Spea_1163	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1164	PWY-6167	flavin biosynthesis II (archaea)
Spea_1164	PWY-6168	flavin biosynthesis III (fungi)
Spea_1164	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_1165	PWY-6167	flavin biosynthesis II (archaea)
Spea_1165	PWY-6168	flavin biosynthesis III (fungi)
Spea_1167	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Spea_1167	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Spea_1167	PWY-6896	thiamin salvage I
Spea_1167	PWY-6897	thiamin salvage II
Spea_1168	PWY-5269	cardiolipin biosynthesis II
Spea_1168	PWY-5668	cardiolipin biosynthesis I
Spea_1173	PWY-4061	glutathione-mediated detoxification I
Spea_1173	PWY-6842	glutathione-mediated detoxification II
Spea_1173	PWY-7112	4-hydroxy-2-nonenal detoxification
Spea_1173	PWY-7533	gliotoxin biosynthesis
Spea_1184	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Spea_1184	PWY-7177	UTP and CTP dephosphorylation II
Spea_1184	PWY-7185	UTP and CTP dephosphorylation I
Spea_1185	PWY-1042	glycolysis IV (plant cytosol)
Spea_1185	PWY-1622	formaldehyde assimilation I (serine pathway)
Spea_1185	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Spea_1185	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_1185	PWY-5723	Rubisco shunt
Spea_1185	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_1185	PWY-6886	1-butanol autotrophic biosynthesis
Spea_1185	PWY-6901	superpathway of glucose and xylose degradation
Spea_1185	PWY-7003	glycerol degradation to butanol
Spea_1185	PWY-7124	ethylene biosynthesis V (engineered)
Spea_1185	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Spea_1187	PWY-7560	methylerythritol phosphate pathway II
Spea_1188	PWY-7560	methylerythritol phosphate pathway II
Spea_1190	PWY-5381	pyridine nucleotide cycling (plants)
Spea_1190	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_1190	PWY-6596	adenosine nucleotides degradation I
Spea_1190	PWY-6606	guanosine nucleotides degradation II
Spea_1190	PWY-6607	guanosine nucleotides degradation I
Spea_1190	PWY-6608	guanosine nucleotides degradation III
Spea_1190	PWY-7185	UTP and CTP dephosphorylation I
Spea_1198	PWY-6339	syringate degradation
Spea_1200	PWY-6339	syringate degradation
Spea_1202	PWY-43	putrescine biosynthesis II
Spea_1204	PWY-43	putrescine biosynthesis II
Spea_1208	PWY-6840	homoglutathione biosynthesis
Spea_1208	PWY-7255	ergothioneine biosynthesis I (bacteria)
Spea_1211	PWY-6123	inosine-5'-phosphate biosynthesis I
Spea_1211	PWY-7234	inosine-5'-phosphate biosynthesis III
Spea_1228	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_1290	PWY-6728	methylaspartate cycle
Spea_1290	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_1290	PWY-7118	chitin degradation to ethanol
Spea_1290	PWY-7294	xylose degradation IV
Spea_1290	PWY-7295	L-arabinose degradation IV
Spea_1305	PWY-7560	methylerythritol phosphate pathway II
Spea_1313	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_1313	PWY-6596	adenosine nucleotides degradation I
Spea_1313	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1314	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1317	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Spea_1317	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Spea_1317	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Spea_1320	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
Spea_1364	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1398	PWY-3221	dTDP-L-rhamnose biosynthesis II
Spea_1398	PWY-6808	dTDP-D-forosamine biosynthesis
Spea_1398	PWY-6942	dTDP-D-desosamine biosynthesis
Spea_1398	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Spea_1398	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Spea_1398	PWY-6974	dTDP-L-olivose biosynthesis
Spea_1398	PWY-6976	dTDP-L-mycarose biosynthesis
Spea_1398	PWY-7104	dTDP-L-megosamine biosynthesis
Spea_1398	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Spea_1398	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Spea_1398	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Spea_1398	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Spea_1398	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Spea_1398	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Spea_1398	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Spea_1398	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Spea_1399	PWY-3221	dTDP-L-rhamnose biosynthesis II
Spea_1399	PWY-6808	dTDP-D-forosamine biosynthesis
Spea_1399	PWY-6942	dTDP-D-desosamine biosynthesis
Spea_1399	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
Spea_1399	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
Spea_1399	PWY-6974	dTDP-L-olivose biosynthesis
Spea_1399	PWY-6976	dTDP-L-mycarose biosynthesis
Spea_1399	PWY-7104	dTDP-L-megosamine biosynthesis
Spea_1399	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
Spea_1399	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
Spea_1399	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
Spea_1399	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
Spea_1399	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
Spea_1399	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
Spea_1399	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
Spea_1399	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
Spea_1418	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Spea_1446	PWY-3821	galactose degradation III
Spea_1446	PWY-6317	galactose degradation I (Leloir pathway)
Spea_1446	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Spea_1446	PWY-6527	stachyose degradation
Spea_1446	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Spea_1446	PWY-7344	UDP-D-galactose biosynthesis
Spea_1447	PWY-3801	sucrose degradation II (sucrose synthase)
Spea_1447	PWY-6527	stachyose degradation
Spea_1447	PWY-6981	chitin biosynthesis
Spea_1447	PWY-7238	sucrose biosynthesis II
Spea_1447	PWY-7343	UDP-glucose biosynthesis
Spea_1448	PWY-6134	L-tyrosine biosynthesis IV
Spea_1448	PWY-7158	L-phenylalanine degradation V
Spea_1449	PWY-7158	L-phenylalanine degradation V
Spea_1456	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_1468	PWY-6012	acyl carrier protein metabolism I
Spea_1469	PWY-6700	queuosine biosynthesis
Spea_1470	PWY-6700	queuosine biosynthesis
Spea_1476	PWY-5194	siroheme biosynthesis
Spea_1476	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Spea_1484	PWY-2301	<i>myo</i>-inositol biosynthesis
Spea_1484	PWY-4702	phytate degradation I
Spea_1484	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Spea_1486	PWY-6936	seleno-amino acid biosynthesis
Spea_1486	PWY-7274	D-cycloserine biosynthesis
Spea_1488	PWY-6823	molybdenum cofactor biosynthesis
Spea_1488	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_1488	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_1488	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Spea_1498	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_1498	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Spea_1498	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_1498	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_1498	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Spea_1498	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_1498	PWY-7205	CMP phosphorylation
Spea_1498	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_1498	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_1498	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1498	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_1498	PWY-7224	purine deoxyribonucleosides salvage
Spea_1498	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_1498	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Spea_1507	PWY-6605	adenine and adenosine salvage II
Spea_1507	PWY-6610	adenine and adenosine salvage IV
Spea_1521	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Spea_1521	PWY-6855	chitin degradation I (archaea)
Spea_1521	PWY-6906	chitin derivatives degradation
Spea_1522	PWY-2941	L-lysine biosynthesis II
Spea_1522	PWY-2942	L-lysine biosynthesis III
Spea_1522	PWY-5097	L-lysine biosynthesis VI
Spea_1523	PWY-6906	chitin derivatives degradation
Spea_1523	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Spea_1523	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Spea_1528	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_1539	PWY-6902	chitin degradation II
Spea_1564	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Spea_1564	PWY-6153	autoinducer AI-2 biosynthesis I
Spea_1564	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Spea_1568	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_1582	PWY-5451	acetone degradation I (to methylglyoxal)
Spea_1582	PWY-6588	pyruvate fermentation to acetone
Spea_1582	PWY-6876	isopropanol biosynthesis
Spea_1582	PWY-7466	acetone degradation III (to propane-1,2-diol)
Spea_1589	PWY-5958	acridone alkaloid biosynthesis
Spea_1589	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Spea_1589	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Spea_1590	PWY-5958	acridone alkaloid biosynthesis
Spea_1590	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Spea_1590	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Spea_1609	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_1613	PWY-2941	L-lysine biosynthesis II
Spea_1613	PWY-2942	L-lysine biosynthesis III
Spea_1613	PWY-5097	L-lysine biosynthesis VI
Spea_1613	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_1613	PWY-6559	spermidine biosynthesis II
Spea_1613	PWY-6562	norspermidine biosynthesis
Spea_1613	PWY-7153	grixazone biosynthesis
Spea_1613	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_1618	PWY-2161	folate polyglutamylation
Spea_1621	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Spea_1621	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Spea_1621	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Spea_1621	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Spea_1631	PWY-6317	galactose degradation I (Leloir pathway)
Spea_1631	PWY-6527	stachyose degradation
Spea_1632	PWY-3821	galactose degradation III
Spea_1632	PWY-6317	galactose degradation I (Leloir pathway)
Spea_1632	PWY-6527	stachyose degradation
Spea_1643	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_1664	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_1664	PWY-6148	tetrahydromethanopterin biosynthesis
Spea_1664	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Spea_1664	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_1668	PWY-1281	sulfoacetaldehyde degradation I
Spea_1668	PWY-5482	pyruvate fermentation to acetate II
Spea_1668	PWY-5485	pyruvate fermentation to acetate IV
Spea_1668	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_1668	PWY-6637	sulfolactate degradation II
Spea_1669	PWY-5482	pyruvate fermentation to acetate II
Spea_1669	PWY-5485	pyruvate fermentation to acetate IV
Spea_1669	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_1672	PWY-5480	pyruvate fermentation to ethanol I
Spea_1672	PWY-5485	pyruvate fermentation to acetate IV
Spea_1672	PWY-5493	reductive monocarboxylic acid cycle
Spea_1682	PWY-6936	seleno-amino acid biosynthesis
Spea_1685	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Spea_1700	PWY-4381	fatty acid biosynthesis initiation I
Spea_1718	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_1718	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_1718	PWY-6608	guanosine nucleotides degradation III
Spea_1718	PWY-6609	adenine and adenosine salvage III
Spea_1718	PWY-6611	adenine and adenosine salvage V
Spea_1718	PWY-6620	guanine and guanosine salvage
Spea_1718	PWY-6627	salinosporamide A biosynthesis
Spea_1718	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Spea_1718	PWY-7179	purine deoxyribonucleosides degradation I
Spea_1718	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_1743	PWY-5491	diethylphosphate degradation
Spea_1786	PWY-3781	aerobic respiration I (cytochrome c)
Spea_1786	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Spea_1786	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_1786	PWY-5690	TCA cycle II (plants and fungi)
Spea_1786	PWY-6728	methylaspartate cycle
Spea_1786	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_1786	PWY-7254	TCA cycle VII (acetate-producers)
Spea_1786	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_1787	PWY-3781	aerobic respiration I (cytochrome c)
Spea_1787	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Spea_1787	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_1787	PWY-5690	TCA cycle II (plants and fungi)
Spea_1787	PWY-6728	methylaspartate cycle
Spea_1787	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_1787	PWY-7254	TCA cycle VII (acetate-producers)
Spea_1787	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_1788	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Spea_1789	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Spea_1790	PWY-5392	reductive TCA cycle II
Spea_1790	PWY-5537	pyruvate fermentation to acetate V
Spea_1790	PWY-5538	pyruvate fermentation to acetate VI
Spea_1790	PWY-5690	TCA cycle II (plants and fungi)
Spea_1790	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_1790	PWY-6728	methylaspartate cycle
Spea_1790	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_1790	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Spea_1791	PWY-5392	reductive TCA cycle II
Spea_1791	PWY-5537	pyruvate fermentation to acetate V
Spea_1791	PWY-5538	pyruvate fermentation to acetate VI
Spea_1791	PWY-5690	TCA cycle II (plants and fungi)
Spea_1791	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_1791	PWY-6728	methylaspartate cycle
Spea_1791	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_1791	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Spea_1801	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Spea_1803	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_1804	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Spea_1808	PWY-5194	siroheme biosynthesis
Spea_1808	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Spea_1811	PWY-6683	sulfate reduction III (assimilatory)
Spea_1851	PWY-2723	trehalose degradation V
Spea_1851	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Spea_1851	PWY-5661	GDP-glucose biosynthesis
Spea_1851	PWY-5940	streptomycin biosynthesis
Spea_1851	PWY-621	sucrose degradation III (sucrose invertase)
Spea_1851	PWY-622	starch biosynthesis
Spea_1851	PWY-6731	starch degradation III
Spea_1851	PWY-6737	starch degradation V
Spea_1851	PWY-6981	chitin biosynthesis
Spea_1851	PWY-7238	sucrose biosynthesis II
Spea_1851	PWY-7343	UDP-glucose biosynthesis
Spea_1864	PWY-4041	&gamma;-glutamyl cycle
Spea_1864	PWY-5826	hypoglycin biosynthesis
Spea_1910	PWY-5101	L-isoleucine biosynthesis II
Spea_1910	PWY-5103	L-isoleucine biosynthesis III
Spea_1910	PWY-5104	L-isoleucine biosynthesis IV
Spea_1910	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Spea_1910	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Spea_1910	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Spea_1910	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_1911	PWY-5101	L-isoleucine biosynthesis II
Spea_1911	PWY-5103	L-isoleucine biosynthesis III
Spea_1911	PWY-5104	L-isoleucine biosynthesis IV
Spea_1911	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Spea_1911	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Spea_1911	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Spea_1911	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_1914	PWY-5663	tetrahydrobiopterin biosynthesis I
Spea_1914	PWY-5664	tetrahydrobiopterin biosynthesis II
Spea_1914	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_1914	PWY-6703	preQ<sub>0</sub> biosynthesis
Spea_1914	PWY-6983	tetrahydrobiopterin biosynthesis III
Spea_1914	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Spea_1919	PWY-7193	pyrimidine ribonucleosides salvage I
Spea_1921	PWY-6543	4-aminobenzoate biosynthesis
Spea_1921	PWY-6722	candicidin biosynthesis
Spea_1923	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_1923	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_1923	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_1923	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Spea_1923	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_1923	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_1942	PWY-5022	4-aminobutanoate degradation V
Spea_1942	PWY-6728	methylaspartate cycle
Spea_1942	PWY-7126	ethylene biosynthesis IV
Spea_1943	PWY-5686	UMP biosynthesis
Spea_1951	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_1951	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_1951	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_1951	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_1951	PWY-6113	superpathway of mycolate biosynthesis
Spea_1951	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_1951	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_1951	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_1951	PWYG-321	mycolate biosynthesis
Spea_1955	PWY-5269	cardiolipin biosynthesis II
Spea_1955	PWY-5668	cardiolipin biosynthesis I
Spea_1963	PWY-6854	ethylene biosynthesis III (microbes)
Spea_1970	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_1970	PWY-4621	arsenate detoxification II (glutaredoxin)
Spea_1980	PWY-2941	L-lysine biosynthesis II
Spea_1980	PWY-2942	L-lysine biosynthesis III
Spea_1980	PWY-5097	L-lysine biosynthesis VI
Spea_1985	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_1985	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_1988	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Spea_1988	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_1988	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Spea_1988	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Spea_2005	PWY-6728	methylaspartate cycle
Spea_2005	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2005	PWY-7118	chitin degradation to ethanol
Spea_2005	PWY-7294	xylose degradation IV
Spea_2005	PWY-7295	L-arabinose degradation IV
Spea_2037	PWY-5958	acridone alkaloid biosynthesis
Spea_2037	PWY-6543	4-aminobenzoate biosynthesis
Spea_2037	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Spea_2037	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Spea_2037	PWY-6722	candicidin biosynthesis
Spea_2038	PWY-5392	reductive TCA cycle II
Spea_2038	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Spea_2038	PWY-5690	TCA cycle II (plants and fungi)
Spea_2038	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_2038	PWY-6728	methylaspartate cycle
Spea_2038	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2038	PWY-7254	TCA cycle VII (acetate-producers)
Spea_2038	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Spea_2041	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2043	PWY-6728	methylaspartate cycle
Spea_2043	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2043	PWY-7118	chitin degradation to ethanol
Spea_2043	PWY-7294	xylose degradation IV
Spea_2043	PWY-7295	L-arabinose degradation IV
Spea_2044	PWY-3162	L-tryptophan degradation V (side chain pathway)
Spea_2044	PWY-5057	L-valine degradation II
Spea_2044	PWY-5076	L-leucine degradation III
Spea_2044	PWY-5078	L-isoleucine degradation II
Spea_2044	PWY-5079	L-phenylalanine degradation III
Spea_2044	PWY-5082	L-methionine degradation III
Spea_2044	PWY-5162	2-oxopentenoate degradation
Spea_2044	PWY-5436	L-threonine degradation IV
Spea_2044	PWY-5480	pyruvate fermentation to ethanol I
Spea_2044	PWY-5486	pyruvate fermentation to ethanol II
Spea_2044	PWY-5751	phenylethanol biosynthesis
Spea_2044	PWY-6028	acetoin degradation
Spea_2044	PWY-6313	serotonin degradation
Spea_2044	PWY-6333	acetaldehyde biosynthesis I
Spea_2044	PWY-6342	noradrenaline and adrenaline degradation
Spea_2044	PWY-6587	pyruvate fermentation to ethanol III
Spea_2044	PWY-6802	salidroside biosynthesis
Spea_2044	PWY-6871	3-methylbutanol biosynthesis
Spea_2044	PWY-7013	L-1,2-propanediol degradation
Spea_2044	PWY-7085	triethylamine degradation
Spea_2044	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_2044	PWY-7118	chitin degradation to ethanol
Spea_2044	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Spea_2044	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Spea_2044	PWY-7557	dehydrodiconiferyl alcohol degradation
Spea_2056	PWY-2723	trehalose degradation V
Spea_2056	PWY-3801	sucrose degradation II (sucrose synthase)
Spea_2056	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Spea_2056	PWY-5661	GDP-glucose biosynthesis
Spea_2056	PWY-5661-1	Spea_2056
Spea_2056	PWY-5940	streptomycin biosynthesis
Spea_2056	PWY-5941	glycogen degradation II (eukaryotic)
Spea_2056	PWY-622	starch biosynthesis
Spea_2056	PWY-6731	starch degradation III
Spea_2056	PWY-6737	starch degradation V
Spea_2056	PWY-6749	CMP-legionaminate biosynthesis I
Spea_2056	PWY-7238	sucrose biosynthesis II
Spea_2056	PWY-7343	UDP-glucose biosynthesis
Spea_2063	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_2063	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_2063	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_2063	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_2063	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2063	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2063	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_2063	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Spea_2064	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_2064	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_2064	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_2064	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_2064	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2064	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2064	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_2064	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Spea_2066	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Spea_2066	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Spea_2066	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Spea_2066	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Spea_2066	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Spea_2066	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Spea_2066	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Spea_2066	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Spea_2066	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Spea_2066	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Spea_2070	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_2070	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Spea_2070	PWY-6638	sulfolactate degradation III
Spea_2070	PWY-6642	(<i>R</i>)-cysteate degradation
Spea_2070	PWY-6643	coenzyme M biosynthesis II
Spea_2070	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Spea_2070	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Spea_2070	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_2071	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Spea_2072	PWY-7205	CMP phosphorylation
Spea_2077	PWY-5686	UMP biosynthesis
Spea_2082	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Spea_2082	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Spea_2085	PWY-5269	cardiolipin biosynthesis II
Spea_2085	PWY-5668	cardiolipin biosynthesis I
Spea_2104	PWY-1042	glycolysis IV (plant cytosol)
Spea_2104	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_2104	PWY-6901	superpathway of glucose and xylose degradation
Spea_2104	PWY-7003	glycerol degradation to butanol
Spea_2106	PWY-1042	glycolysis IV (plant cytosol)
Spea_2106	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_2106	PWY-6901	superpathway of glucose and xylose degradation
Spea_2106	PWY-7003	glycerol degradation to butanol
Spea_2116	PWY-5162	2-oxopentenoate degradation
Spea_2117	PWY-5162	2-oxopentenoate degradation
Spea_2117	PWY-5436	L-threonine degradation IV
Spea_2117	PWY-5480	pyruvate fermentation to ethanol I
Spea_2117	PWY-6587	pyruvate fermentation to ethanol III
Spea_2117	PWY-7085	triethylamine degradation
Spea_2117	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Spea_2157	PWY-723	alkylnitronates degradation
Spea_2163	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Spea_2204	PWY-6100	L-carnitine biosynthesis
Spea_2214	PWY-3781	aerobic respiration I (cytochrome c)
Spea_2214	PWY-4521	arsenite oxidation I (respiratory)
Spea_2214	PWY-6692	Fe(II) oxidation
Spea_2214	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_2215	PWY-3781	aerobic respiration I (cytochrome c)
Spea_2215	PWY-4521	arsenite oxidation I (respiratory)
Spea_2215	PWY-6692	Fe(II) oxidation
Spea_2215	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_2228	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_2228	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Spea_2228	PWY-6638	sulfolactate degradation III
Spea_2228	PWY-6642	(<i>R</i>)-cysteate degradation
Spea_2228	PWY-6643	coenzyme M biosynthesis II
Spea_2228	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Spea_2228	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Spea_2228	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_2229	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Spea_2243	PWY-5316	nicotine biosynthesis
Spea_2243	PWY-7342	superpathway of nicotine biosynthesis
Spea_2244	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Spea_2267	PWY-6167	flavin biosynthesis II (archaea)
Spea_2267	PWY-6168	flavin biosynthesis III (fungi)
Spea_2267	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_2285	PWY-4261	glycerol degradation I
Spea_2290	PWY-6803	phosphatidylcholine acyl editing
Spea_2290	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
Spea_2290	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
Spea_2290	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Spea_2322	PWY-5747	2-methylcitrate cycle II
Spea_2324	PWY-5392	reductive TCA cycle II
Spea_2324	PWY-5537	pyruvate fermentation to acetate V
Spea_2324	PWY-5538	pyruvate fermentation to acetate VI
Spea_2324	PWY-5690	TCA cycle II (plants and fungi)
Spea_2324	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_2324	PWY-6728	methylaspartate cycle
Spea_2324	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2324	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Spea_2332	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Spea_2332	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Spea_2332	PWY-7242	D-fructuronate degradation
Spea_2332	PWY-7310	D-glucosaminate degradation
Spea_2333	PWY-5101	L-isoleucine biosynthesis II
Spea_2333	PWY-5103	L-isoleucine biosynthesis III
Spea_2333	PWY-5104	L-isoleucine biosynthesis IV
Spea_2333	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_2334	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Spea_2334	PWY-6855	chitin degradation I (archaea)
Spea_2334	PWY-6906	chitin derivatives degradation
Spea_2335	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Spea_2337	PWY-1042	glycolysis IV (plant cytosol)
Spea_2337	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Spea_2337	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_2337	PWY-5723	Rubisco shunt
Spea_2337	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_2337	PWY-6886	1-butanol autotrophic biosynthesis
Spea_2337	PWY-6901	superpathway of glucose and xylose degradation
Spea_2337	PWY-7003	glycerol degradation to butanol
Spea_2337	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Spea_2337	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_2348	PWY-6703	preQ<sub>0</sub> biosynthesis
Spea_2349	PWY-6703	preQ<sub>0</sub> biosynthesis
Spea_2360	PWY-5386	methylglyoxal degradation I
Spea_2378	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_2378	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Spea_2379	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_2379	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_2382	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Spea_2382	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Spea_2382	PWY-6897	thiamin salvage II
Spea_2382	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Spea_2382	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Spea_2382	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Spea_2382	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Spea_2383	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Spea_2406	PWY-5386	methylglyoxal degradation I
Spea_2422	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_2422	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_2464	PWY-6123	inosine-5'-phosphate biosynthesis I
Spea_2464	PWY-6124	inosine-5'-phosphate biosynthesis II
Spea_2464	PWY-7234	inosine-5'-phosphate biosynthesis III
Spea_2477	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Spea_2477	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Spea_2478	PWY-40	putrescine biosynthesis I
Spea_2478	PWY-6305	putrescine biosynthesis IV
Spea_2479	PWY-6834	spermidine biosynthesis III
Spea_2480	PWY-40	putrescine biosynthesis I
Spea_2480	PWY-43	putrescine biosynthesis II
Spea_2480	PWY-6305	putrescine biosynthesis IV
Spea_2480	PWY-6834	spermidine biosynthesis III
Spea_2488	PWY-6556	pyrimidine ribonucleosides salvage II
Spea_2488	PWY-7181	pyrimidine deoxyribonucleosides degradation
Spea_2488	PWY-7193	pyrimidine ribonucleosides salvage I
Spea_2488	PWY-7199	pyrimidine deoxyribonucleosides salvage
Spea_2494	PWY-5367	petroselinate biosynthesis
Spea_2494	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_2494	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_2494	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_2494	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_2494	PWY-6113	superpathway of mycolate biosynthesis
Spea_2494	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_2494	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_2494	PWY-6951	Spea_2494
Spea_2494	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Spea_2494	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2494	PWYG-321	mycolate biosynthesis
Spea_2495	PWY-4381	fatty acid biosynthesis initiation I
Spea_2495	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Spea_2495	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2496	PWY-4381	fatty acid biosynthesis initiation I
Spea_2512	PWY-7039	phosphatidate metabolism, as a signaling molecule
Spea_2519	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Spea_2520	PWY-6936	seleno-amino acid biosynthesis
Spea_2535	PWY-5913	TCA cycle VI (obligate autotrophs)
Spea_2535	PWY-6549	L-glutamine biosynthesis III
Spea_2535	PWY-6728	methylaspartate cycle
Spea_2535	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Spea_2535	PWY-7124	ethylene biosynthesis V (engineered)
Spea_2535	PWY-7254	TCA cycle VII (acetate-producers)
Spea_2535	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Spea_2540	PWY-6123	inosine-5'-phosphate biosynthesis I
Spea_2540	PWY-6124	inosine-5'-phosphate biosynthesis II
Spea_2540	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_2540	PWY-7234	inosine-5'-phosphate biosynthesis III
Spea_2548	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_2548	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_2549	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_2551	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_2551	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_2551	PWY-6164	3-dehydroquinate biosynthesis I
Spea_2558	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Spea_2558	PWY-7118	chitin degradation to ethanol
Spea_2576	PWY-7183	pyrimidine nucleobases salvage I
Spea_2577	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Spea_2577	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Spea_2577	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Spea_2578	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Spea_2578	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Spea_2586	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Spea_2586	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Spea_2586	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Spea_2588	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Spea_2598	PWY-1361	benzoyl-CoA degradation I (aerobic)
Spea_2598	PWY-5109	2-methylbutanoate biosynthesis
Spea_2598	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Spea_2598	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Spea_2598	PWY-5177	glutaryl-CoA degradation
Spea_2598	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Spea_2598	PWY-6435	4-hydroxybenzoate biosynthesis V
Spea_2598	PWY-6583	pyruvate fermentation to butanol I
Spea_2598	PWY-6863	pyruvate fermentation to hexanol
Spea_2598	PWY-6883	pyruvate fermentation to butanol II
Spea_2598	PWY-6944	androstenedione degradation
Spea_2598	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Spea_2598	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Spea_2598	PWY-7007	methyl ketone biosynthesis
Spea_2598	PWY-7046	4-coumarate degradation (anaerobic)
Spea_2598	PWY-7094	fatty acid salvage
Spea_2598	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Spea_2598	PWY-735	jasmonic acid biosynthesis
Spea_2598	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Spea_2599	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Spea_2599	PWY-6435	4-hydroxybenzoate biosynthesis V
Spea_2599	PWY-6863	pyruvate fermentation to hexanol
Spea_2599	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Spea_2599	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Spea_2599	PWY-6948	sitosterol degradation to androstenedione
Spea_2599	PWY-7094	fatty acid salvage
Spea_2599	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
Spea_2599	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
Spea_2599	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
Spea_2599	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
Spea_2599	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
Spea_2599	PWY-735	jasmonic acid biosynthesis
Spea_2616	PWY-6168	flavin biosynthesis III (fungi)
Spea_2616	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Spea_2619	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2619	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2619	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_2683	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Spea_2683	PWY-2201	folate transformations I
Spea_2683	PWY-3841	folate transformations II
Spea_2683	PWY-5030	L-histidine degradation III
Spea_2683	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_2683	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Spea_2689	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_2692	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2696	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2698	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2699	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2716	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2727	PWY-6749	CMP-legionaminate biosynthesis I
Spea_2736	PWY-4381	fatty acid biosynthesis initiation I
Spea_2759	PWY-5988	wound-induced proteolysis I
Spea_2759	PWY-6018	seed germination protein turnover
Spea_2770	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2782	PWY-5642	2,4-dinitrotoluene degradation
Spea_2782	PWY-6373	acrylate degradation
Spea_2793	PWY-5839	menaquinol-7 biosynthesis
Spea_2793	PWY-5851	demethylmenaquinol-9 biosynthesis
Spea_2793	PWY-5852	demethylmenaquinol-8 biosynthesis I
Spea_2793	PWY-5853	demethylmenaquinol-6 biosynthesis I
Spea_2793	PWY-5890	menaquinol-10 biosynthesis
Spea_2793	PWY-5891	menaquinol-11 biosynthesis
Spea_2793	PWY-5892	menaquinol-12 biosynthesis
Spea_2793	PWY-5895	menaquinol-13 biosynthesis
Spea_2798	PWY-4381	fatty acid biosynthesis initiation I
Spea_2798	PWY-5743	3-hydroxypropanoate cycle
Spea_2798	PWY-5744	glyoxylate assimilation
Spea_2798	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Spea_2798	PWY-6679	jadomycin biosynthesis
Spea_2798	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2802	PWY-5074	mevalonate degradation
Spea_2812	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2820	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_2821	PWY-6825	phosphatidylcholine biosynthesis V
Spea_2851	PWY-7199	pyrimidine deoxyribonucleosides salvage
Spea_2874	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_2874	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_2874	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_2874	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_2874	PWY-6113	superpathway of mycolate biosynthesis
Spea_2874	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_2874	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_2874	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2874	PWYG-321	mycolate biosynthesis
Spea_2879	PWY-7560	methylerythritol phosphate pathway II
Spea_2902	PWY-6700	queuosine biosynthesis
Spea_2905	PWY-6012	acyl carrier protein metabolism I
Spea_2905	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Spea_2909	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_2909	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_2909	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_2909	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_2909	PWY-6113	superpathway of mycolate biosynthesis
Spea_2909	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_2909	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_2909	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2909	PWYG-321	mycolate biosynthesis
Spea_2910	PWY-4381	fatty acid biosynthesis initiation I
Spea_2910	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Spea_2910	PWY-723	alkylnitronates degradation
Spea_2910	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_2950	PWY-6019	pseudouridine degradation
Spea_2953	PWY-4321	L-glutamate degradation IV
Spea_2991	PWY-6891	thiazole biosynthesis II (Bacillus)
Spea_2991	PWY-6892	thiazole biosynthesis I (E. coli)
Spea_2991	PWY-7560	methylerythritol phosphate pathway II
Spea_2993	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Spea_2993	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Spea_2993	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Spea_2995	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_2995	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_3021	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_3021	PWY-3162	L-tryptophan degradation V (side chain pathway)
Spea_3021	PWY-5057	L-valine degradation II
Spea_3021	PWY-5076	L-leucine degradation III
Spea_3021	PWY-5078	L-isoleucine degradation II
Spea_3021	PWY-5079	L-phenylalanine degradation III
Spea_3021	PWY-5082	L-methionine degradation III
Spea_3021	PWY-5480	pyruvate fermentation to ethanol I
Spea_3021	PWY-5486	pyruvate fermentation to ethanol II
Spea_3021	PWY-5751	phenylethanol biosynthesis
Spea_3021	PWY-6028	acetoin degradation
Spea_3021	PWY-6313	serotonin degradation
Spea_3021	PWY-6333	acetaldehyde biosynthesis I
Spea_3021	PWY-6342	noradrenaline and adrenaline degradation
Spea_3021	PWY-6587	pyruvate fermentation to ethanol III
Spea_3021	PWY-6802	salidroside biosynthesis
Spea_3021	PWY-6871	3-methylbutanol biosynthesis
Spea_3021	PWY-7013	L-1,2-propanediol degradation
Spea_3021	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Spea_3021	PWY-7118	chitin degradation to ethanol
Spea_3021	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Spea_3021	PWY-7557	dehydrodiconiferyl alcohol degradation
Spea_3045	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_3045	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_3045	PWY-6608	guanosine nucleotides degradation III
Spea_3045	PWY-6609	adenine and adenosine salvage III
Spea_3045	PWY-6611	adenine and adenosine salvage V
Spea_3045	PWY-6620	guanine and guanosine salvage
Spea_3045	PWY-6627	salinosporamide A biosynthesis
Spea_3045	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Spea_3045	PWY-7179	purine deoxyribonucleosides degradation I
Spea_3045	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_3046	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Spea_3047	PWY-7181	pyrimidine deoxyribonucleosides degradation
Spea_3048	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Spea_3064	PWY-1042	glycolysis IV (plant cytosol)
Spea_3064	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_3064	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_3064	PWY-7003	glycerol degradation to butanol
Spea_3065	PWY-6749	CMP-legionaminate biosynthesis I
Spea_3066	PWY-6614	tetrahydrofolate biosynthesis
Spea_3074	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_3074	PWY-5686	UMP biosynthesis
Spea_3074	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_3075	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_3075	PWY-5686	UMP biosynthesis
Spea_3075	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Spea_3076	PWY-2941	L-lysine biosynthesis II
Spea_3076	PWY-2942	L-lysine biosynthesis III
Spea_3076	PWY-5097	L-lysine biosynthesis VI
Spea_3090	PWY-5988	wound-induced proteolysis I
Spea_3090	PWY-6018	seed germination protein turnover
Spea_3104	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Spea_3104	PWY-6153	autoinducer AI-2 biosynthesis I
Spea_3104	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Spea_3116	PWY-6654	phosphopantothenate biosynthesis III
Spea_3121	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_3121	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_3127	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_3129	PWY-7560	methylerythritol phosphate pathway II
Spea_3146	PWY-5381	pyridine nucleotide cycling (plants)
Spea_3146	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Spea_3153	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Spea_3153	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Spea_3155	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Spea_3155	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Spea_3156	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Spea_3156	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Spea_3156	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Spea_3202	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Spea_3202	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Spea_3202	PWY-6936	seleno-amino acid biosynthesis
Spea_3202	PWY-702	L-methionine biosynthesis II
Spea_3215	PWY-5686	UMP biosynthesis
Spea_3243	PWY-5497	purine nucleobases degradation II (anaerobic)
Spea_3243	PWY-6606	guanosine nucleotides degradation II
Spea_3243	PWY-6608	guanosine nucleotides degradation III
Spea_3243	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Spea_3263	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_3277	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_3325	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Spea_3325	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Spea_3376	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Spea_3376	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Spea_3376	PWY-6268	adenosylcobalamin salvage from cobalamin
Spea_3376	PWY-6269	adenosylcobalamin salvage from cobinamide II
Spea_3378	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Spea_3378	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Spea_3378	PWY-6269	adenosylcobalamin salvage from cobinamide II
Spea_3379	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Spea_3379	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Spea_3379	PWY-6269	adenosylcobalamin salvage from cobinamide II
Spea_3380	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Spea_3380	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Spea_3380	PWY-6269	adenosylcobalamin salvage from cobinamide II
Spea_3384	PWY-2201	folate transformations I
Spea_3384	PWY-3841	folate transformations II
Spea_3387	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Spea_3392	PWY-6609	adenine and adenosine salvage III
Spea_3392	PWY-6611	adenine and adenosine salvage V
Spea_3392	PWY-7179	purine deoxyribonucleosides degradation I
Spea_3392	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_3401	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Spea_3490	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Spea_3490	PWY-6853	ethylene biosynthesis II (microbes)
Spea_3490	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Spea_3507	PWY-5723	Rubisco shunt
Spea_3519	PWY-5958	acridone alkaloid biosynthesis
Spea_3519	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Spea_3519	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Spea_3528	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_3528	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_3528	PWY-7185	UTP and CTP dephosphorylation I
Spea_3528	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Spea_3528	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Spea_3536	PWY-3781	aerobic respiration I (cytochrome c)
Spea_3536	PWY-6692	Fe(II) oxidation
Spea_3536	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Spea_3536	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_3541	PWY-2781	<i>cis</i>-zeatin biosynthesis
Spea_3545	PWY-6938	NADH repair
Spea_3549	PWY-5669	phosphatidylethanolamine biosynthesis I
Spea_3580	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Spea_3592	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_3600	PWY-5674	nitrate reduction IV (dissimilatory)
Spea_3603	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_3603	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_3612	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Spea_3612	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Spea_3655	PWY-6902	chitin degradation II
Spea_3713	PWY-5667	CDP-diacylglycerol biosynthesis I
Spea_3713	PWY-5981	CDP-diacylglycerol biosynthesis III
Spea_3713	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Spea_3713	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Spea_3720	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Spea_3720	PWY-2161	folate polyglutamylation
Spea_3720	PWY-2201	folate transformations I
Spea_3720	PWY-3841	folate transformations II
Spea_3736	PWY-1042	glycolysis IV (plant cytosol)
Spea_3736	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_3736	PWY-6901	superpathway of glucose and xylose degradation
Spea_3736	PWY-7003	glycerol degradation to butanol
Spea_3784	PWY-4202	arsenate detoxification I (glutaredoxin)
Spea_3784	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Spea_3784	PWY-6608	guanosine nucleotides degradation III
Spea_3784	PWY-6609	adenine and adenosine salvage III
Spea_3784	PWY-6611	adenine and adenosine salvage V
Spea_3784	PWY-6620	guanine and guanosine salvage
Spea_3784	PWY-6627	salinosporamide A biosynthesis
Spea_3784	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Spea_3784	PWY-7179	purine deoxyribonucleosides degradation I
Spea_3784	PWY-7179-1	purine deoxyribonucleosides degradation
Spea_3792	PWY-5839	menaquinol-7 biosynthesis
Spea_3792	PWY-5844	menaquinol-9 biosynthesis
Spea_3792	PWY-5849	menaquinol-6 biosynthesis
Spea_3792	PWY-5890	menaquinol-10 biosynthesis
Spea_3792	PWY-5891	menaquinol-11 biosynthesis
Spea_3792	PWY-5892	menaquinol-12 biosynthesis
Spea_3792	PWY-5895	menaquinol-13 biosynthesis
Spea_3801	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Spea_3801	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Spea_3810	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_3810	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_3811	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Spea_3811	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Spea_3811	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Spea_3811	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Spea_3813	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_3813	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_3814	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Spea_3814	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Spea_3814	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Spea_3815	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_3815	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_3822	PWY-4261	glycerol degradation I
Spea_3827	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Spea_3828	PWY-6871	3-methylbutanol biosynthesis
Spea_3834	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Spea_3839	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Spea_3839	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Spea_3839	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Spea_3839	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Spea_3842	PWY-5663	tetrahydrobiopterin biosynthesis I
Spea_3842	PWY-5664	tetrahydrobiopterin biosynthesis II
Spea_3842	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Spea_3842	PWY-6703	preQ<sub>0</sub> biosynthesis
Spea_3842	PWY-6983	tetrahydrobiopterin biosynthesis III
Spea_3842	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Spea_3843	PWY-5686	UMP biosynthesis
Spea_3877	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Spea_3892	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_3892	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_3892	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_3892	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_3892	PWY-6113	superpathway of mycolate biosynthesis
Spea_3892	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_3892	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_3892	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_3892	PWYG-321	mycolate biosynthesis
Spea_3902	PWY-5367	petroselinate biosynthesis
Spea_3902	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Spea_3902	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Spea_3902	PWY-5989	stearate biosynthesis II (bacteria and plants)
Spea_3902	PWY-5994	palmitate biosynthesis I (animals and fungi)
Spea_3902	PWY-6113	superpathway of mycolate biosynthesis
Spea_3902	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Spea_3902	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_3902	PWY-6951	Spea_3902
Spea_3902	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Spea_3902	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Spea_3902	PWYG-321	mycolate biosynthesis
Spea_3913	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Spea_3913	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Spea_3916	PWY-381	nitrate reduction II (assimilatory)
Spea_3916	PWY-5675	nitrate reduction V (assimilatory)
Spea_3916	PWY-6549	L-glutamine biosynthesis III
Spea_3916	PWY-6963	ammonia assimilation cycle I
Spea_3916	PWY-6964	ammonia assimilation cycle II
Spea_3971	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Spea_3971	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Spea_3972	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Spea_3972	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Spea_3974	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Spea_3974	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Spea_3996	PWY-5667	CDP-diacylglycerol biosynthesis I
Spea_3996	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Spea_4000	PWY-3781	aerobic respiration I (cytochrome c)
Spea_4000	PWY-4521	arsenite oxidation I (respiratory)
Spea_4000	PWY-6692	Fe(II) oxidation
Spea_4000	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Spea_4013	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Spea_4068	PWY-4081	glutathione redox reactions I
Spea_4076	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Spea_4076	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Spea_4089	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Spea_4089	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Spea_4089	PWY-5901	2,3-dihydroxybenzoate biosynthesis
Spea_4089	PWY-6406	salicylate biosynthesis I
Spea_4097	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Spea_4098	PWY-6823	molybdenum cofactor biosynthesis
Spea_4099	PWY-6823	molybdenum cofactor biosynthesis
Spea_4116	PWY-6823	molybdenum cofactor biosynthesis
Spea_4120	PWY-6823	molybdenum cofactor biosynthesis
Spea_4148	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
Spea_4148	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Spea_4148	PWY-6148	tetrahydromethanopterin biosynthesis
Spea_4168	PWY-5028	L-histidine degradation II
Spea_4168	PWY-5030	L-histidine degradation III
Spea_4169	PWY-5028	L-histidine degradation II
Spea_4169	PWY-5030	L-histidine degradation III
Spea_4171	PWY-5028	L-histidine degradation II
Spea_4171	PWY-5030	L-histidine degradation III
Spea_4214	PWY-5667	CDP-diacylglycerol biosynthesis I
Spea_4214	PWY-5981	CDP-diacylglycerol biosynthesis III
Spea_4217	PWY-1042	glycolysis IV (plant cytosol)
Spea_4217	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Spea_4217	PWY-5484	glycolysis II (from fructose 6-phosphate)
Spea_4217	PWY-5723	Rubisco shunt
Spea_4217	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Spea_4217	PWY-6886	1-butanol autotrophic biosynthesis
Spea_4217	PWY-6901	superpathway of glucose and xylose degradation
Spea_4217	PWY-7003	glycerol degradation to butanol
Spea_4217	PWY-7124	ethylene biosynthesis V (engineered)
Spea_4217	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Spea_4225	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
Spea_4225	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
Spea_4234	PWY-6749	CMP-legionaminate biosynthesis I
Spea_4237	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Spea_4240	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Spea_4242	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis