Smed_0008	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Smed_0029	PWY-1281	sulfoacetaldehyde degradation I
Smed_0029	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Smed_0029	PWY-5482	pyruvate fermentation to acetate II
Smed_0029	PWY-5485	pyruvate fermentation to acetate IV
Smed_0029	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_0029	PWY-6637	sulfolactate degradation II
Smed_0029	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_0046	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Smed_0046	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Smed_0075	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_0075	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_0092	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
Smed_0092	PWY-6853	ethylene biosynthesis II (microbes)
Smed_0092	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Smed_0106	PWY-5686	UMP biosynthesis
Smed_0107	PWY-5686	UMP biosynthesis
Smed_0109	PWY-3801	sucrose degradation II (sucrose synthase)
Smed_0109	PWY-5054	sorbitol biosynthesis I
Smed_0109	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Smed_0109	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Smed_0109	PWY-5659	GDP-mannose biosynthesis
Smed_0109	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_0109	PWY-621	sucrose degradation III (sucrose invertase)
Smed_0109	PWY-622	starch biosynthesis
Smed_0109	PWY-6531	mannitol cycle
Smed_0109	PWY-6981	chitin biosynthesis
Smed_0109	PWY-7238	sucrose biosynthesis II
Smed_0109	PWY-7347	sucrose biosynthesis III
Smed_0109	PWY-7385	1,3-propanediol biosynthesis (engineered)
Smed_0115	PWY-723	alkylnitronates degradation
Smed_0128	PWY-4981	L-proline biosynthesis II (from arginine)
Smed_0128	PWY-4984	urea cycle
Smed_0128	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_0134	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_0144	PWY-1361	benzoyl-CoA degradation I (aerobic)
Smed_0144	PWY-5109	2-methylbutanoate biosynthesis
Smed_0144	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Smed_0144	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Smed_0144	PWY-5177	glutaryl-CoA degradation
Smed_0144	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_0144	PWY-6435	4-hydroxybenzoate biosynthesis V
Smed_0144	PWY-6583	pyruvate fermentation to butanol I
Smed_0144	PWY-6863	pyruvate fermentation to hexanol
Smed_0144	PWY-6883	pyruvate fermentation to butanol II
Smed_0144	PWY-6944	androstenedione degradation
Smed_0144	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Smed_0144	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Smed_0144	PWY-7007	methyl ketone biosynthesis
Smed_0144	PWY-7046	4-coumarate degradation (anaerobic)
Smed_0144	PWY-7094	fatty acid salvage
Smed_0144	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Smed_0144	PWY-735	jasmonic acid biosynthesis
Smed_0144	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Smed_0150	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_0161	PWY-5686	UMP biosynthesis
Smed_0168	PWY-3821	galactose degradation III
Smed_0168	PWY-6317	galactose degradation I (Leloir pathway)
Smed_0168	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Smed_0168	PWY-6527	stachyose degradation
Smed_0168	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Smed_0168	PWY-7344	UDP-D-galactose biosynthesis
Smed_0169	PWY-3461	L-tyrosine biosynthesis II
Smed_0169	PWY-3462	L-phenylalanine biosynthesis II
Smed_0169	PWY-6120	L-tyrosine biosynthesis III
Smed_0169	PWY-6627	salinosporamide A biosynthesis
Smed_0200	PWY-5381	pyridine nucleotide cycling (plants)
Smed_0206	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_0206	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_0253	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_0290	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Smed_0290	PWY-2201	folate transformations I
Smed_0290	PWY-3841	folate transformations II
Smed_0290	PWY-5030	L-histidine degradation III
Smed_0290	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_0290	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Smed_0298	PWY-5101	L-isoleucine biosynthesis II
Smed_0298	PWY-5103	L-isoleucine biosynthesis III
Smed_0298	PWY-5104	L-isoleucine biosynthesis IV
Smed_0298	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_0299	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Smed_0299	PWY-6855	chitin degradation I (archaea)
Smed_0299	PWY-6906	chitin derivatives degradation
Smed_0300	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Smed_0302	PWY-381	nitrate reduction II (assimilatory)
Smed_0302	PWY-5675	nitrate reduction V (assimilatory)
Smed_0302	PWY-6549	L-glutamine biosynthesis III
Smed_0302	PWY-6963	ammonia assimilation cycle I
Smed_0302	PWY-6964	ammonia assimilation cycle II
Smed_0308	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_0322	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_0322	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_0324	PWY-5642	2,4-dinitrotoluene degradation
Smed_0324	PWY-6373	acrylate degradation
Smed_0358	PWY-6825	phosphatidylcholine biosynthesis V
Smed_0379	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Smed_0379	PWY-6596	adenosine nucleotides degradation I
Smed_0379	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Smed_0383	PWY-5506	methanol oxidation to formaldehyde IV
Smed_0387	PWY-6840	homoglutathione biosynthesis
Smed_0387	PWY-7255	ergothioneine biosynthesis I (bacteria)
Smed_0394	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_0394	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_0395	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_0395	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_0411	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Smed_0411	PWY-6167	flavin biosynthesis II (archaea)
Smed_0411	PWY-6168	flavin biosynthesis III (fungi)
Smed_0432	PWY-5250	methanogenesis from trimethylamine
Smed_0434	PWY-5101	L-isoleucine biosynthesis II
Smed_0434	PWY-5103	L-isoleucine biosynthesis III
Smed_0434	PWY-5104	L-isoleucine biosynthesis IV
Smed_0434	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_0436	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Smed_0436	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Smed_0436	PWY-7242	D-fructuronate degradation
Smed_0436	PWY-7310	D-glucosaminate degradation
Smed_0437	PWY-7130	L-glucose degradation
Smed_0456	PWY-7560	methylerythritol phosphate pathway II
Smed_0471	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_0471	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_0471	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_0480	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_0480	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_0490	PWY-6829	tRNA methylation (yeast)
Smed_0490	PWY-7285	methylwyosine biosynthesis
Smed_0490	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Smed_0492	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_0492	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_0492	PWY-7560	methylerythritol phosphate pathway II
Smed_0509	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Smed_0509	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Smed_0512	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_0512	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_0512	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_0512	PWY-6113	superpathway of mycolate biosynthesis
Smed_0512	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_0512	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_0512	PWY-7096	triclosan resistance
Smed_0512	PWYG-321	mycolate biosynthesis
Smed_0515	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Smed_0516	PWY-6167	flavin biosynthesis II (archaea)
Smed_0516	PWY-6168	flavin biosynthesis III (fungi)
Smed_0516	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Smed_0519	PWY-3781	aerobic respiration I (cytochrome c)
Smed_0519	PWY-4521	arsenite oxidation I (respiratory)
Smed_0519	PWY-6692	Fe(II) oxidation
Smed_0519	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_0527	PWY-7560	methylerythritol phosphate pathway II
Smed_0528	PWY-702	L-methionine biosynthesis II
Smed_0548	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Smed_0548	PWY-6549	L-glutamine biosynthesis III
Smed_0548	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Smed_0548	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_0557	PWY-5278	sulfite oxidation III
Smed_0557	PWY-5340	sulfate activation for sulfonation
Smed_0557	PWY-6683	sulfate reduction III (assimilatory)
Smed_0557	PWY-6932	selenate reduction
Smed_0558	PWY-5278	sulfite oxidation III
Smed_0558	PWY-5340	sulfate activation for sulfonation
Smed_0558	PWY-6683	sulfate reduction III (assimilatory)
Smed_0558	PWY-6932	selenate reduction
Smed_0562	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Smed_0562	PWY-7494	choline degradation IV
Smed_0563	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Smed_0563	PWY-7494	choline degradation IV
Smed_0582	PWY-7425	2-chloroacrylate degradation I
Smed_0587	PWY-6854	ethylene biosynthesis III (microbes)
Smed_0654	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Smed_0654	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Smed_0654	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Smed_0658	PWY-6617	adenosine nucleotides degradation III
Smed_0673	PWY-2941	L-lysine biosynthesis II
Smed_0673	PWY-2942	L-lysine biosynthesis III
Smed_0673	PWY-5097	L-lysine biosynthesis VI
Smed_0680	PWY-6012	acyl carrier protein metabolism I
Smed_0680	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Smed_0688	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
Smed_0699	PWY-5316	nicotine biosynthesis
Smed_0699	PWY-7342	superpathway of nicotine biosynthesis
Smed_0700	PWY-5316	nicotine biosynthesis
Smed_0700	PWY-7342	superpathway of nicotine biosynthesis
Smed_0701	PWY-5316	nicotine biosynthesis
Smed_0701	PWY-5381	pyridine nucleotide cycling (plants)
Smed_0701	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Smed_0701	PWY-7342	superpathway of nicotine biosynthesis
Smed_0702	PWY-6854	ethylene biosynthesis III (microbes)
Smed_0714	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_0715	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_0716	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_0718	PWY-5101	L-isoleucine biosynthesis II
Smed_0718	PWY-6871	3-methylbutanol biosynthesis
Smed_0723	PWY-5669	phosphatidylethanolamine biosynthesis I
Smed_0724	PWY-5669	phosphatidylethanolamine biosynthesis I
Smed_0727	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_0727	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_0727	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_0727	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Smed_0730	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Smed_0744	PWY-4381	fatty acid biosynthesis initiation I
Smed_0744	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Smed_0744	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_0745	PWY-5367	petroselinate biosynthesis
Smed_0745	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_0745	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_0745	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_0745	PWY-5994	palmitate biosynthesis I (animals and fungi)
Smed_0745	PWY-6113	superpathway of mycolate biosynthesis
Smed_0745	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_0745	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_0745	PWY-6951	Smed_0745|Smed_0745|YP_001326436.1|GeneID:5321582
Smed_0745	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Smed_0745	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_0745	PWYG-321	mycolate biosynthesis
Smed_0759	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Smed_0766	PWY-5988	wound-induced proteolysis I
Smed_0766	PWY-6018	seed germination protein turnover
Smed_0775	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Smed_0775	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Smed_0775	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_0775	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_0775	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Smed_0775	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Smed_0775	PWY-7205	CMP phosphorylation
Smed_0775	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Smed_0775	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_0775	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Smed_0775	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_0775	PWY-7224	purine deoxyribonucleosides salvage
Smed_0775	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_0775	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Smed_0779	PWY-6823	molybdenum cofactor biosynthesis
Smed_0781	PWY-5269	cardiolipin biosynthesis II
Smed_0781	PWY-5668	cardiolipin biosynthesis I
Smed_0791	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_0791	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Smed_0792	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_0792	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_0792	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_0812	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Smed_0812	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Smed_0816	PWY-1622	formaldehyde assimilation I (serine pathway)
Smed_0816	PWY-181	photorespiration
Smed_0816	PWY-2161	folate polyglutamylation
Smed_0816	PWY-2201	folate transformations I
Smed_0816	PWY-3661	glycine betaine degradation I
Smed_0816	PWY-3661-1	glycine betaine degradation II (mammalian)
Smed_0816	PWY-3841	folate transformations II
Smed_0816	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_0819	PWY-6167	flavin biosynthesis II (archaea)
Smed_0819	PWY-6168	flavin biosynthesis III (fungi)
Smed_0819	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_0821	PWY-6167	flavin biosynthesis II (archaea)
Smed_0821	PWY-6168	flavin biosynthesis III (fungi)
Smed_0829	PWY-4381	fatty acid biosynthesis initiation I
Smed_0851	PWY-6655	xanthan biosynthesis
Smed_0851	PWY-6658	acetan biosynthesis
Smed_0859	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_0859	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_0860	PWY-40	putrescine biosynthesis I
Smed_0860	PWY-6305	putrescine biosynthesis IV
Smed_0867	PWY-5344	L-homocysteine biosynthesis
Smed_0867	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Smed_0868	PWY-5692	allantoin degradation to glyoxylate II
Smed_0868	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
Smed_0901	PWY-3781	aerobic respiration I (cytochrome c)
Smed_0901	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Smed_0901	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Smed_0901	PWY-6692	Fe(II) oxidation
Smed_0904	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Smed_0904	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Smed_0906	PWY-5743	3-hydroxypropanoate cycle
Smed_0906	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_0906	PWY-6728	methylaspartate cycle
Smed_0906	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Smed_0935	PWY-5686	UMP biosynthesis
Smed_0936	PWY-5686	UMP biosynthesis
Smed_0944	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Smed_0954	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Smed_0954	PWY-6416	quinate degradation II
Smed_0954	PWY-6707	gallate biosynthesis
Smed_0963	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Smed_0963	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Smed_0963	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Smed_1007	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_1021	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1024	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1024	PWY-3162	L-tryptophan degradation V (side chain pathway)
Smed_1024	PWY-5057	L-valine degradation II
Smed_1024	PWY-5076	L-leucine degradation III
Smed_1024	PWY-5078	L-isoleucine degradation II
Smed_1024	PWY-5079	L-phenylalanine degradation III
Smed_1024	PWY-5082	L-methionine degradation III
Smed_1024	PWY-5480	pyruvate fermentation to ethanol I
Smed_1024	PWY-5486	pyruvate fermentation to ethanol II
Smed_1024	PWY-5751	phenylethanol biosynthesis
Smed_1024	PWY-6028	acetoin degradation
Smed_1024	PWY-6313	serotonin degradation
Smed_1024	PWY-6333	acetaldehyde biosynthesis I
Smed_1024	PWY-6342	noradrenaline and adrenaline degradation
Smed_1024	PWY-6587	pyruvate fermentation to ethanol III
Smed_1024	PWY-6802	salidroside biosynthesis
Smed_1024	PWY-6871	3-methylbutanol biosynthesis
Smed_1024	PWY-7013	L-1,2-propanediol degradation
Smed_1024	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_1024	PWY-7118	chitin degradation to ethanol
Smed_1024	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Smed_1024	PWY-7557	dehydrodiconiferyl alcohol degradation
Smed_1026	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Smed_1026	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Smed_1049	PWY-5663	tetrahydrobiopterin biosynthesis I
Smed_1049	PWY-5664	tetrahydrobiopterin biosynthesis II
Smed_1049	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Smed_1049	PWY-6703	preQ<sub>0</sub> biosynthesis
Smed_1049	PWY-6983	tetrahydrobiopterin biosynthesis III
Smed_1049	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Smed_1064	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_1064	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_1067	PWY-1042	glycolysis IV (plant cytosol)
Smed_1067	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_1067	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_1067	PWY-7003	glycerol degradation to butanol
Smed_1069	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Smed_1069	PWY-7177	UTP and CTP dephosphorylation II
Smed_1069	PWY-7185	UTP and CTP dephosphorylation I
Smed_1071	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Smed_1071	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Smed_1072	PWY-1042	glycolysis IV (plant cytosol)
Smed_1072	PWY-1622	formaldehyde assimilation I (serine pathway)
Smed_1072	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Smed_1072	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_1072	PWY-5723	Rubisco shunt
Smed_1072	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_1072	PWY-6886	1-butanol autotrophic biosynthesis
Smed_1072	PWY-6901	superpathway of glucose and xylose degradation
Smed_1072	PWY-7003	glycerol degradation to butanol
Smed_1072	PWY-7124	ethylene biosynthesis V (engineered)
Smed_1072	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Smed_1081	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Smed_1081	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Smed_1083	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Smed_1083	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Smed_1083	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Smed_1087	PWY-7560	methylerythritol phosphate pathway II
Smed_1099	PWY-5194	siroheme biosynthesis
Smed_1099	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Smed_1101	PWY-6683	sulfate reduction III (assimilatory)
Smed_1109	PWY-6936	seleno-amino acid biosynthesis
Smed_1113	PWY-6936	seleno-amino acid biosynthesis
Smed_1113	PWY-7274	D-cycloserine biosynthesis
Smed_1140	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_1140	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_1140	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_1140	PWY-5994	palmitate biosynthesis I (animals and fungi)
Smed_1140	PWY-6113	superpathway of mycolate biosynthesis
Smed_1140	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_1140	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_1140	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_1140	PWYG-321	mycolate biosynthesis
Smed_1167	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Smed_1168	PWY-5381	pyridine nucleotide cycling (plants)
Smed_1168	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Smed_1168	PWY-6596	adenosine nucleotides degradation I
Smed_1168	PWY-6606	guanosine nucleotides degradation II
Smed_1168	PWY-6607	guanosine nucleotides degradation I
Smed_1168	PWY-6608	guanosine nucleotides degradation III
Smed_1168	PWY-7185	UTP and CTP dephosphorylation I
Smed_1233	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Smed_1233	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_1233	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Smed_1233	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Smed_1233	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_1233	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_1233	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_1233	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Smed_1237	PWY-5674	nitrate reduction IV (dissimilatory)
Smed_1257	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_1257	PWY-5686	UMP biosynthesis
Smed_1257	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_1267	PWY-6700	queuosine biosynthesis
Smed_1268	PWY-6700	queuosine biosynthesis
Smed_1271	PWY-6825	phosphatidylcholine biosynthesis V
Smed_1277	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1292	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Smed_1292	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_1292	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_1292	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Smed_1292	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Smed_1292	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Smed_1293	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Smed_1293	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Smed_1384	PWY-6785	hydrogen production VIII
Smed_1387	PWY-6938	NADH repair
Smed_1389	PWY-381	nitrate reduction II (assimilatory)
Smed_1389	PWY-5675	nitrate reduction V (assimilatory)
Smed_1389	PWY-6549	L-glutamine biosynthesis III
Smed_1389	PWY-6963	ammonia assimilation cycle I
Smed_1389	PWY-6964	ammonia assimilation cycle II
Smed_1404	PWY-6749	CMP-legionaminate biosynthesis I
Smed_1405	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Smed_1411	PWY-6823	molybdenum cofactor biosynthesis
Smed_1420	PWY-6826	phosphatidylcholine biosynthesis VI
Smed_1450	PWY-5386	methylglyoxal degradation I
Smed_1451	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Smed_1465	PWY-6823	molybdenum cofactor biosynthesis
Smed_1465	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_1465	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_1465	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Smed_1469	PWY-6823	molybdenum cofactor biosynthesis
Smed_1469	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_1469	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_1469	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Smed_1488	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_1489	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_1489	PWY-5723	Rubisco shunt
Smed_1492	PWY-6123	inosine-5'-phosphate biosynthesis I
Smed_1492	PWY-6124	inosine-5'-phosphate biosynthesis II
Smed_1492	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_1492	PWY-7234	inosine-5'-phosphate biosynthesis III
Smed_1498	PWY-6123	inosine-5'-phosphate biosynthesis I
Smed_1498	PWY-6124	inosine-5'-phosphate biosynthesis II
Smed_1498	PWY-7234	inosine-5'-phosphate biosynthesis III
Smed_1499	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_1499	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_1499	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_1500	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_1500	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_1500	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_1505	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Smed_1505	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Smed_1505	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Smed_1516	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_1516	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_1519	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_1519	PWY-6549	L-glutamine biosynthesis III
Smed_1519	PWY-6728	methylaspartate cycle
Smed_1519	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_1519	PWY-7124	ethylene biosynthesis V (engineered)
Smed_1519	PWY-7254	TCA cycle VII (acetate-producers)
Smed_1519	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Smed_1524	PWY-6019	pseudouridine degradation
Smed_1532	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Smed_1532	PWY-6148	tetrahydromethanopterin biosynthesis
Smed_1532	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Smed_1532	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Smed_1533	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Smed_1533	PWY-6148	tetrahydromethanopterin biosynthesis
Smed_1533	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Smed_1533	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Smed_1534	PWY-6614	tetrahydrofolate biosynthesis
Smed_1541	PWY-3781	aerobic respiration I (cytochrome c)
Smed_1541	PWY-6692	Fe(II) oxidation
Smed_1541	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
Smed_1541	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_1549	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Smed_1549	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Smed_1558	PWY-1281	sulfoacetaldehyde degradation I
Smed_1558	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Smed_1558	PWY-5482	pyruvate fermentation to acetate II
Smed_1558	PWY-5485	pyruvate fermentation to acetate IV
Smed_1558	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_1558	PWY-6637	sulfolactate degradation II
Smed_1558	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_1560	PWY-6157	autoinducer AI-1 biosynthesis
Smed_1562	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_1562	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Smed_1566	PWY-5381	pyridine nucleotide cycling (plants)
Smed_1566	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Smed_1569	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1570	PWY-6164	3-dehydroquinate biosynthesis I
Smed_1571	PWY-4081	glutathione redox reactions I
Smed_1573	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_1573	PWY-5723	Rubisco shunt
Smed_1574	PWY-181	photorespiration
Smed_1576	PWY-5392	reductive TCA cycle II
Smed_1576	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Smed_1576	PWY-5690	TCA cycle II (plants and fungi)
Smed_1576	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_1576	PWY-6728	methylaspartate cycle
Smed_1576	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_1576	PWY-7254	TCA cycle VII (acetate-producers)
Smed_1576	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Smed_1577	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Smed_1577	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Smed_1582	PWY-6823	molybdenum cofactor biosynthesis
Smed_1584	PWY-5964	guanylyl molybdenum cofactor biosynthesis
Smed_1602	PWY-7039	phosphatidate metabolism, as a signaling molecule
Smed_1603	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_1603	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Smed_1603	PWY-6269	adenosylcobalamin salvage from cobinamide II
Smed_1604	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_1604	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Smed_1604	PWY-6269	adenosylcobalamin salvage from cobinamide II
Smed_1724	PWY-6807	xyloglucan degradation II (exoglucanase)
Smed_1740	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_1740	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_1740	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_1740	PWY-5994	palmitate biosynthesis I (animals and fungi)
Smed_1740	PWY-6113	superpathway of mycolate biosynthesis
Smed_1740	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_1740	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_1740	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_1740	PWYG-321	mycolate biosynthesis
Smed_1744	PWY-5443	aminopropanol phosphate biosynthesis I
Smed_1746	PWY-5194	siroheme biosynthesis
Smed_1746	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Smed_1758	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_1758	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Smed_1758	PWY-6268	adenosylcobalamin salvage from cobalamin
Smed_1758	PWY-6269	adenosylcobalamin salvage from cobinamide II
Smed_1761	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_1761	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Smed_1761	PWY-6269	adenosylcobalamin salvage from cobinamide II
Smed_1775	PWY-5250	methanogenesis from trimethylamine
Smed_1783	PWY-2201	folate transformations I
Smed_1783	PWY-3841	folate transformations II
Smed_1801	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1840	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_1842	PWY-3781	aerobic respiration I (cytochrome c)
Smed_1842	PWY-4521	arsenite oxidation I (respiratory)
Smed_1842	PWY-6692	Fe(II) oxidation
Smed_1842	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_1962	PWY-5101	L-isoleucine biosynthesis II
Smed_1962	PWY-5103	L-isoleucine biosynthesis III
Smed_1962	PWY-5104	L-isoleucine biosynthesis IV
Smed_1962	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_1970	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_1970	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2000	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Smed_2000	PWY-581	indole-3-acetate biosynthesis II
Smed_2000	PWY-7308	acrylonitrile degradation I
Smed_2001	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
Smed_2001	PWY-581	indole-3-acetate biosynthesis II
Smed_2001	PWY-7308	acrylonitrile degradation I
Smed_2007	PWY-5101	L-isoleucine biosynthesis II
Smed_2007	PWY-5103	L-isoleucine biosynthesis III
Smed_2007	PWY-5104	L-isoleucine biosynthesis IV
Smed_2007	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Smed_2007	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Smed_2007	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Smed_2007	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_2008	PWY-5101	L-isoleucine biosynthesis II
Smed_2008	PWY-5103	L-isoleucine biosynthesis III
Smed_2008	PWY-5104	L-isoleucine biosynthesis IV
Smed_2008	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Smed_2008	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Smed_2008	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Smed_2008	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_2011	PWY-2781	<i>cis</i>-zeatin biosynthesis
Smed_2019	PWY-3841	folate transformations II
Smed_2019	PWY-6614	tetrahydrofolate biosynthesis
Smed_2021	PWY-3841	folate transformations II
Smed_2021	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_2021	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_2021	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Smed_2021	PWY-7199	pyrimidine deoxyribonucleosides salvage
Smed_2021	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Smed_2031	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2031	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2035	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Smed_2035	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Smed_2059	PWY-6654	phosphopantothenate biosynthesis III
Smed_2077	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2077	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2080	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2080	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2081	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2081	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2082	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Smed_2082	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Smed_2082	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Smed_2082	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Smed_2084	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2084	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2085	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Smed_2085	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Smed_2085	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Smed_2086	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2086	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2094	PWY-2201	folate transformations I
Smed_2094	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_2095	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Smed_2095	PWY-2201	folate transformations I
Smed_2095	PWY-3841	folate transformations II
Smed_2095	PWY-5030	L-histidine degradation III
Smed_2095	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_2095	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Smed_2096	PWY-1622	formaldehyde assimilation I (serine pathway)
Smed_2096	PWY-181	photorespiration
Smed_2096	PWY-2161	folate polyglutamylation
Smed_2096	PWY-2201	folate transformations I
Smed_2096	PWY-3661	glycine betaine degradation I
Smed_2096	PWY-3661-1	glycine betaine degradation II (mammalian)
Smed_2096	PWY-3841	folate transformations II
Smed_2096	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_2106	PWY-1042	glycolysis IV (plant cytosol)
Smed_2106	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_2106	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2106	PWY-6531	mannitol cycle
Smed_2106	PWY-7385	1,3-propanediol biosynthesis (engineered)
Smed_2115	PWY-2201	folate transformations I
Smed_2115	PWY-3841	folate transformations II
Smed_2130	PWY-381	nitrate reduction II (assimilatory)
Smed_2130	PWY-5675	nitrate reduction V (assimilatory)
Smed_2130	PWY-6549	L-glutamine biosynthesis III
Smed_2130	PWY-6963	ammonia assimilation cycle I
Smed_2130	PWY-6964	ammonia assimilation cycle II
Smed_2138	PWY-6167	flavin biosynthesis II (archaea)
Smed_2138	PWY-6168	flavin biosynthesis III (fungi)
Smed_2150	PWY-1042	glycolysis IV (plant cytosol)
Smed_2150	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2150	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_2150	PWY-7003	glycerol degradation to butanol
Smed_2154	PWY-4261	glycerol degradation I
Smed_2156	PWY-4261	glycerol degradation I
Smed_2156	PWY-6118	glycerol-3-phosphate shuttle
Smed_2156	PWY-6952	glycerophosphodiester degradation
Smed_2159	PWY-4261	glycerol degradation I
Smed_2174	PWY-1361	benzoyl-CoA degradation I (aerobic)
Smed_2174	PWY-3602	L-carnitine degradation II
Smed_2174	PWY-5109	2-methylbutanoate biosynthesis
Smed_2174	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Smed_2174	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Smed_2174	PWY-5177	glutaryl-CoA degradation
Smed_2174	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_2174	PWY-6435	4-hydroxybenzoate biosynthesis V
Smed_2174	PWY-6583	pyruvate fermentation to butanol I
Smed_2174	PWY-6863	pyruvate fermentation to hexanol
Smed_2174	PWY-6883	pyruvate fermentation to butanol II
Smed_2174	PWY-6944	androstenedione degradation
Smed_2174	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Smed_2174	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Smed_2174	PWY-7007	methyl ketone biosynthesis
Smed_2174	PWY-7046	4-coumarate degradation (anaerobic)
Smed_2174	PWY-7094	fatty acid salvage
Smed_2174	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Smed_2174	PWY-735	jasmonic acid biosynthesis
Smed_2174	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Smed_2174	PWY-7472	D-carnitine degradation II
Smed_2176	PWY-5392	reductive TCA cycle II
Smed_2176	PWY-5537	pyruvate fermentation to acetate V
Smed_2176	PWY-5538	pyruvate fermentation to acetate VI
Smed_2176	PWY-5690	TCA cycle II (plants and fungi)
Smed_2176	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_2176	PWY-6728	methylaspartate cycle
Smed_2176	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2176	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Smed_2196	PWY-5250	methanogenesis from trimethylamine
Smed_2224	PWY-7378	aminopropanol phosphate biosynthesis II
Smed_2229	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_2229	PWY-5686	UMP biosynthesis
Smed_2229	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_2246	PWY-6351	D-<i>myo</i>-inositol (1,4,5)-trisphosphate biosynthesis
Smed_2246	PWY-6367	D-<i>myo</i>-inositol-5-phosphate metabolism
Smed_2246	PWY-7039	phosphatidate metabolism, as a signaling molecule
Smed_2249	PWY-3341	L-proline biosynthesis III
Smed_2249	PWY-4981	L-proline biosynthesis II (from arginine)
Smed_2249	PWY-6344	L-ornithine degradation II (Stickland reaction)
Smed_2270	PWY-6605	adenine and adenosine salvage II
Smed_2270	PWY-6610	adenine and adenosine salvage IV
Smed_2281	PWY-4061	glutathione-mediated detoxification I
Smed_2281	PWY-6842	glutathione-mediated detoxification II
Smed_2281	PWY-7112	4-hydroxy-2-nonenal detoxification
Smed_2281	PWY-7533	gliotoxin biosynthesis
Smed_2287	PWY-6871	3-methylbutanol biosynthesis
Smed_2293	PWY-6700	queuosine biosynthesis
Smed_2295	PWY-5958	acridone alkaloid biosynthesis
Smed_2295	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Smed_2295	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Smed_2298	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Smed_2298	PWY-2161	folate polyglutamylation
Smed_2298	PWY-2201	folate transformations I
Smed_2298	PWY-3841	folate transformations II
Smed_2318	PWY-6610	adenine and adenosine salvage IV
Smed_2327	PWY-7533	gliotoxin biosynthesis
Smed_2351	PWY-4261	glycerol degradation I
Smed_2383	PWY-5704	urea degradation II
Smed_2386	PWY-5704	urea degradation II
Smed_2388	PWY-5704	urea degradation II
Smed_2410	PWY-40	putrescine biosynthesis I
Smed_2410	PWY-6305	putrescine biosynthesis IV
Smed_2416	PWY-381	nitrate reduction II (assimilatory)
Smed_2416	PWY-5675	nitrate reduction V (assimilatory)
Smed_2416	PWY-6549	L-glutamine biosynthesis III
Smed_2416	PWY-6963	ammonia assimilation cycle I
Smed_2416	PWY-6964	ammonia assimilation cycle II
Smed_2426	PWY-3781	aerobic respiration I (cytochrome c)
Smed_2426	PWY-4521	arsenite oxidation I (respiratory)
Smed_2426	PWY-6692	Fe(II) oxidation
Smed_2426	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_2450	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Smed_2450	PWY-7494	choline degradation IV
Smed_2460	PWY-6349	CDP-archaeol biosynthesis
Smed_2463	PWY-3801	sucrose degradation II (sucrose synthase)
Smed_2463	PWY-5054	sorbitol biosynthesis I
Smed_2463	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Smed_2463	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Smed_2463	PWY-5659	GDP-mannose biosynthesis
Smed_2463	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_2463	PWY-621	sucrose degradation III (sucrose invertase)
Smed_2463	PWY-622	starch biosynthesis
Smed_2463	PWY-6531	mannitol cycle
Smed_2463	PWY-6981	chitin biosynthesis
Smed_2463	PWY-7238	sucrose biosynthesis II
Smed_2463	PWY-7347	sucrose biosynthesis III
Smed_2463	PWY-7385	1,3-propanediol biosynthesis (engineered)
Smed_2464	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Smed_2464	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Smed_2464	PWY-7242	D-fructuronate degradation
Smed_2464	PWY-7310	D-glucosaminate degradation
Smed_2469	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Smed_2470	PWY-4261	glycerol degradation I
Smed_2471	PWY-4261	glycerol degradation I
Smed_2478	PWY-4261	glycerol degradation I
Smed_2479	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_2479	PWY-5723	Rubisco shunt
Smed_2479	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_2479	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_2479	PWY-6901	superpathway of glucose and xylose degradation
Smed_2479	PWY-7560	methylerythritol phosphate pathway II
Smed_2485	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_2485	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_2488	PWY-5101	L-isoleucine biosynthesis II
Smed_2488	PWY-5103	L-isoleucine biosynthesis III
Smed_2488	PWY-5104	L-isoleucine biosynthesis IV
Smed_2488	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_2504	PWY-2941	L-lysine biosynthesis II
Smed_2504	PWY-2942	L-lysine biosynthesis III
Smed_2504	PWY-5097	L-lysine biosynthesis VI
Smed_2504	PWY-6559	spermidine biosynthesis II
Smed_2504	PWY-6562	norspermidine biosynthesis
Smed_2504	PWY-7153	grixazone biosynthesis
Smed_2506	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
Smed_2506	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
Smed_2506	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
Smed_2506	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
Smed_2506	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
Smed_2506	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
Smed_2506	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
Smed_2506	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
Smed_2506	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Smed_2506	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
Smed_2516	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_2530	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Smed_2530	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Smed_2530	PWY-6268	adenosylcobalamin salvage from cobalamin
Smed_2530	PWY-6269	adenosylcobalamin salvage from cobinamide II
Smed_2534	PWY-1361	benzoyl-CoA degradation I (aerobic)
Smed_2534	PWY-5109	2-methylbutanoate biosynthesis
Smed_2534	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Smed_2534	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Smed_2534	PWY-5177	glutaryl-CoA degradation
Smed_2534	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_2534	PWY-6435	4-hydroxybenzoate biosynthesis V
Smed_2534	PWY-6583	pyruvate fermentation to butanol I
Smed_2534	PWY-6863	pyruvate fermentation to hexanol
Smed_2534	PWY-6883	pyruvate fermentation to butanol II
Smed_2534	PWY-6944	androstenedione degradation
Smed_2534	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Smed_2534	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Smed_2534	PWY-7007	methyl ketone biosynthesis
Smed_2534	PWY-7046	4-coumarate degradation (anaerobic)
Smed_2534	PWY-7094	fatty acid salvage
Smed_2534	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Smed_2534	PWY-735	jasmonic acid biosynthesis
Smed_2534	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Smed_2536	PWY-4983	L-citrulline-nitric oxide cycle
Smed_2536	PWY-4984	urea cycle
Smed_2536	PWY-5	canavanine biosynthesis
Smed_2536	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_2536	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_2538	PWY-2941	L-lysine biosynthesis II
Smed_2538	PWY-2942	L-lysine biosynthesis III
Smed_2538	PWY-5097	L-lysine biosynthesis VI
Smed_2541	PWY-6599	guanine and guanosine salvage II
Smed_2541	PWY-6609	adenine and adenosine salvage III
Smed_2541	PWY-6610	adenine and adenosine salvage IV
Smed_2541	PWY-6620	guanine and guanosine salvage
Smed_2549	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Smed_2552	PWY-5386	methylglyoxal degradation I
Smed_2559	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Smed_2560	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Smed_2564	PWY-6164	3-dehydroquinate biosynthesis I
Smed_2565	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Smed_2568	PWY-4381	fatty acid biosynthesis initiation I
Smed_2568	PWY-5743	3-hydroxypropanoate cycle
Smed_2568	PWY-5744	glyoxylate assimilation
Smed_2568	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_2568	PWY-6679	jadomycin biosynthesis
Smed_2568	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_2616	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_2622	PWY-6749	CMP-legionaminate biosynthesis I
Smed_2650	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_2650	PWY-5723	Rubisco shunt
Smed_2650	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_2650	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_2650	PWY-6901	superpathway of glucose and xylose degradation
Smed_2650	PWY-7560	methylerythritol phosphate pathway II
Smed_2651	PWY-1042	glycolysis IV (plant cytosol)
Smed_2651	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2651	PWY-6901	superpathway of glucose and xylose degradation
Smed_2651	PWY-7003	glycerol degradation to butanol
Smed_2653	PWY-1042	glycolysis IV (plant cytosol)
Smed_2653	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2653	PWY-6886	1-butanol autotrophic biosynthesis
Smed_2653	PWY-6901	superpathway of glucose and xylose degradation
Smed_2653	PWY-7003	glycerol degradation to butanol
Smed_2654	PWY-1042	glycolysis IV (plant cytosol)
Smed_2654	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_2654	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2654	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_2654	PWY-7385	1,3-propanediol biosynthesis (engineered)
Smed_2665	PWY-2301	<i>myo</i>-inositol biosynthesis
Smed_2665	PWY-4702	phytate degradation I
Smed_2665	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
Smed_2667	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Smed_2667	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Smed_2667	PWY-6897	thiamin salvage II
Smed_2667	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Smed_2667	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Smed_2667	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Smed_2667	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Smed_2672	PWY-6123	inosine-5'-phosphate biosynthesis I
Smed_2672	PWY-7234	inosine-5'-phosphate biosynthesis III
Smed_2676	PWY-1042	glycolysis IV (plant cytosol)
Smed_2676	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Smed_2676	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_2676	PWY-5723	Rubisco shunt
Smed_2676	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_2676	PWY-6886	1-butanol autotrophic biosynthesis
Smed_2676	PWY-6901	superpathway of glucose and xylose degradation
Smed_2676	PWY-7003	glycerol degradation to butanol
Smed_2676	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Smed_2676	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Smed_2685	PWY-5958	acridone alkaloid biosynthesis
Smed_2685	PWY-6543	4-aminobenzoate biosynthesis
Smed_2685	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Smed_2685	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Smed_2685	PWY-6722	candicidin biosynthesis
Smed_2692	PWY-5667	CDP-diacylglycerol biosynthesis I
Smed_2692	PWY-5981	CDP-diacylglycerol biosynthesis III
Smed_2699	PWY-4261	glycerol degradation I
Smed_2699	PWY-6118	glycerol-3-phosphate shuttle
Smed_2699	PWY-6952	glycerophosphodiester degradation
Smed_2703	PWY-4261	glycerol degradation I
Smed_2707	PWY-3801	sucrose degradation II (sucrose synthase)
Smed_2707	PWY-6527	stachyose degradation
Smed_2707	PWY-6981	chitin biosynthesis
Smed_2707	PWY-7238	sucrose biosynthesis II
Smed_2707	PWY-7343	UDP-glucose biosynthesis
Smed_2723	PWY-5101	L-isoleucine biosynthesis II
Smed_2723	PWY-5103	L-isoleucine biosynthesis III
Smed_2723	PWY-5104	L-isoleucine biosynthesis IV
Smed_2723	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_2724	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_2739	PWY-5941	glycogen degradation II (eukaryotic)
Smed_2739	PWY-622	starch biosynthesis
Smed_2739	PWY-6731	starch degradation III
Smed_2739	PWY-6737	starch degradation V
Smed_2739	PWY-7238	sucrose biosynthesis II
Smed_2740	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
Smed_2740	PWY-622	starch biosynthesis
Smed_2741	PWY-622	starch biosynthesis
Smed_2742	PWY-622	starch biosynthesis
Smed_2743	PWY-6749	CMP-legionaminate biosynthesis I
Smed_2749	PWY-3661	glycine betaine degradation I
Smed_2749	PWY-4722	creatinine degradation II
Smed_2750	PWY-3661	glycine betaine degradation I
Smed_2750	PWY-4722	creatinine degradation II
Smed_2751	PWY-3661	glycine betaine degradation I
Smed_2751	PWY-4722	creatinine degradation II
Smed_2752	PWY-3661	glycine betaine degradation I
Smed_2752	PWY-4722	creatinine degradation II
Smed_2760	PWY-3781	aerobic respiration I (cytochrome c)
Smed_2760	PWY-4521	arsenite oxidation I (respiratory)
Smed_2760	PWY-6692	Fe(II) oxidation
Smed_2760	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_2766	PWY-6167	flavin biosynthesis II (archaea)
Smed_2779	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Smed_2779	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Smed_2779	PWY-7242	D-fructuronate degradation
Smed_2779	PWY-7310	D-glucosaminate degradation
Smed_2782	PWY-5674	nitrate reduction IV (dissimilatory)
Smed_2786	PWY-3121	linamarin degradation
Smed_2786	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Smed_2786	PWY-6002	lotaustralin degradation
Smed_2786	PWY-6788	cellulose degradation II (fungi)
Smed_2786	PWY-7089	taxiphyllin bioactivation
Smed_2786	PWY-7091	linustatin bioactivation
Smed_2786	PWY-7092	neolinustatin bioactivation
Smed_2791	PWY-4261	glycerol degradation I
Smed_2799	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Smed_2812	PWY-5194	siroheme biosynthesis
Smed_2812	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Smed_2813	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Smed_2816	PWY-5194	siroheme biosynthesis
Smed_2816	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Smed_2818	PWY-6683	sulfate reduction III (assimilatory)
Smed_2819	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
Smed_2826	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Smed_2829	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Smed_2829	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Smed_2830	PWY-2201	folate transformations I
Smed_2830	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_2869	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Smed_2869	PWY-7494	choline degradation IV
Smed_2870	PWY-2201	folate transformations I
Smed_2870	PWY-3841	folate transformations II
Smed_2879	PWY-7560	methylerythritol phosphate pathway II
Smed_2880	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Smed_2880	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
Smed_2891	PWY-31	canavanine degradation
Smed_2891	PWY-4984	urea cycle
Smed_2891	PWY-6305	putrescine biosynthesis IV
Smed_2891	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
Smed_2897	PWY-1881	formate oxidation to CO<sub>2</sub>
Smed_2897	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_2897	PWY-6696	oxalate degradation III
Smed_2903	PWY-4261	glycerol degradation I
Smed_2903	PWY-6118	glycerol-3-phosphate shuttle
Smed_2903	PWY-6952	glycerophosphodiester degradation
Smed_2922	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_2924	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_2928	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Smed_2928	PWY-5723	Rubisco shunt
Smed_2936	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Smed_2936	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Smed_2940	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Smed_2941	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Smed_2942	PWY-5392	reductive TCA cycle II
Smed_2942	PWY-5537	pyruvate fermentation to acetate V
Smed_2942	PWY-5538	pyruvate fermentation to acetate VI
Smed_2942	PWY-5690	TCA cycle II (plants and fungi)
Smed_2942	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_2942	PWY-6728	methylaspartate cycle
Smed_2942	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2942	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Smed_2943	PWY-5392	reductive TCA cycle II
Smed_2943	PWY-5537	pyruvate fermentation to acetate V
Smed_2943	PWY-5538	pyruvate fermentation to acetate VI
Smed_2943	PWY-5690	TCA cycle II (plants and fungi)
Smed_2943	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_2943	PWY-6728	methylaspartate cycle
Smed_2943	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2943	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Smed_2944	PWY-1622	formaldehyde assimilation I (serine pathway)
Smed_2944	PWY-5392	reductive TCA cycle II
Smed_2944	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Smed_2944	PWY-5690	TCA cycle II (plants and fungi)
Smed_2944	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_2944	PWY-6728	methylaspartate cycle
Smed_2944	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2944	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Smed_2944	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Smed_2956	PWY-3781	aerobic respiration I (cytochrome c)
Smed_2956	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Smed_2956	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Smed_2956	PWY-5690	TCA cycle II (plants and fungi)
Smed_2956	PWY-6728	methylaspartate cycle
Smed_2956	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2956	PWY-7254	TCA cycle VII (acetate-producers)
Smed_2956	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_2957	PWY-3781	aerobic respiration I (cytochrome c)
Smed_2957	PWY-4302	aerobic respiration III (alternative oxidase pathway)
Smed_2957	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Smed_2957	PWY-5690	TCA cycle II (plants and fungi)
Smed_2957	PWY-6728	methylaspartate cycle
Smed_2957	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_2957	PWY-7254	TCA cycle VII (acetate-producers)
Smed_2957	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
Smed_2964	PWY-5667	CDP-diacylglycerol biosynthesis I
Smed_2964	PWY-5981	CDP-diacylglycerol biosynthesis III
Smed_2966	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Smed_2966	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Smed_2967	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Smed_2967	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Smed_2983	PWY-3982	uracil degradation I (reductive)
Smed_2983	PWY-6430	thymine degradation
Smed_2984	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Smed_2987	PWY-6745	phytochelatins biosynthesis
Smed_3012	PWY-5381	pyridine nucleotide cycling (plants)
Smed_3012	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Smed_3031	PWY-2723	trehalose degradation V
Smed_3031	PWY-6317	galactose degradation I (Leloir pathway)
Smed_3031	PWY-6737	starch degradation V
Smed_3035	PWY-4261	glycerol degradation I
Smed_3063	PWY-4983	L-citrulline-nitric oxide cycle
Smed_3063	PWY-4984	urea cycle
Smed_3063	PWY-5	canavanine biosynthesis
Smed_3063	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_3063	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_3071	PWY-7158	L-phenylalanine degradation V
Smed_3093	PWY-2941	L-lysine biosynthesis II
Smed_3093	PWY-5097	L-lysine biosynthesis VI
Smed_3096	PWY-3461	L-tyrosine biosynthesis II
Smed_3096	PWY-3462	L-phenylalanine biosynthesis II
Smed_3096	PWY-6120	L-tyrosine biosynthesis III
Smed_3096	PWY-6627	salinosporamide A biosynthesis
Smed_3099	PWY-6829	tRNA methylation (yeast)
Smed_3099	PWY-7285	methylwyosine biosynthesis
Smed_3099	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Smed_3105	PWY-6898	thiamin salvage III
Smed_3105	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Smed_3105	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Smed_3116	PWY-5676	acetyl-CoA fermentation to butanoate II
Smed_3116	PWY-5741	ethylmalonyl-CoA pathway
Smed_3116	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Smed_3128	PWY-6891	thiazole biosynthesis II (Bacillus)
Smed_3128	PWY-6892	thiazole biosynthesis I (E. coli)
Smed_3128	PWY-7560	methylerythritol phosphate pathway II
Smed_3130	PWY-4261	glycerol degradation I
Smed_3133	PWY-7560	methylerythritol phosphate pathway II
Smed_3139	PWY-5750	itaconate biosynthesis
Smed_3139	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_3139	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
Smed_3158	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Smed_3158	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Smed_3164	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
Smed_3164	PWY-7494	choline degradation IV
Smed_3178	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Smed_3182	PWY-2941	L-lysine biosynthesis II
Smed_3182	PWY-2942	L-lysine biosynthesis III
Smed_3182	PWY-5097	L-lysine biosynthesis VI
Smed_3182	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Smed_3182	PWY-6559	spermidine biosynthesis II
Smed_3182	PWY-6562	norspermidine biosynthesis
Smed_3182	PWY-7153	grixazone biosynthesis
Smed_3182	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Smed_3185	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Smed_3185	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Smed_3185	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Smed_3185	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_3186	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Smed_3186	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Smed_3187	PWY-5022	4-aminobutanoate degradation V
Smed_3187	PWY-6728	methylaspartate cycle
Smed_3187	PWY-7126	ethylene biosynthesis IV
Smed_3189	PWY-6123	inosine-5'-phosphate biosynthesis I
Smed_3189	PWY-6124	inosine-5'-phosphate biosynthesis II
Smed_3189	PWY-7234	inosine-5'-phosphate biosynthesis III
Smed_3194	PWY-6672	<i>cis</i>-genanyl-CoA degradation
Smed_3194	PWY-7118	chitin degradation to ethanol
Smed_3197	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Smed_3206	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Smed_3208	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
Smed_3208	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
Smed_3211	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Smed_3239	PWY-4381	fatty acid biosynthesis initiation I
Smed_3239	PWY-5743	3-hydroxypropanoate cycle
Smed_3239	PWY-5744	glyoxylate assimilation
Smed_3239	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Smed_3239	PWY-6679	jadomycin biosynthesis
Smed_3239	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_3240	PWY-2161	folate polyglutamylation
Smed_3247	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Smed_3253	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Smed_3253	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_3257	PWY-3961	phosphopantothenate biosynthesis II
Smed_3270	PWY-6728	methylaspartate cycle
Smed_3270	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Smed_3270	PWY-7118	chitin degradation to ethanol
Smed_3270	PWY-7294	xylose degradation IV
Smed_3270	PWY-7295	L-arabinose degradation IV
Smed_3286	PWY-3661	glycine betaine degradation I
Smed_3286	PWY-4722	creatinine degradation II
Smed_3287	PWY-3661	glycine betaine degradation I
Smed_3287	PWY-4722	creatinine degradation II
Smed_3288	PWY-3661	glycine betaine degradation I
Smed_3288	PWY-4722	creatinine degradation II
Smed_3289	PWY-3661	glycine betaine degradation I
Smed_3289	PWY-4722	creatinine degradation II
Smed_3294	PWY-381	nitrate reduction II (assimilatory)
Smed_3294	PWY-5675	nitrate reduction V (assimilatory)
Smed_3294	PWY-6549	L-glutamine biosynthesis III
Smed_3294	PWY-6963	ammonia assimilation cycle I
Smed_3294	PWY-6964	ammonia assimilation cycle II
Smed_3310	PWY-2201	folate transformations I
Smed_3310	PWY-5497	purine nucleobases degradation II (anaerobic)
Smed_3320	PWY-5101	L-isoleucine biosynthesis II
Smed_3320	PWY-5103	L-isoleucine biosynthesis III
Smed_3320	PWY-5104	L-isoleucine biosynthesis IV
Smed_3320	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Smed_3340	PWY-6556	pyrimidine ribonucleosides salvage II
Smed_3340	PWY-7181	pyrimidine deoxyribonucleosides degradation
Smed_3340	PWY-7193	pyrimidine ribonucleosides salvage I
Smed_3340	PWY-7199	pyrimidine deoxyribonucleosides salvage
Smed_3341	PWY-4202	arsenate detoxification I (glutaredoxin)
Smed_3341	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Smed_3341	PWY-6608	guanosine nucleotides degradation III
Smed_3341	PWY-6609	adenine and adenosine salvage III
Smed_3341	PWY-6611	adenine and adenosine salvage V
Smed_3341	PWY-6620	guanine and guanosine salvage
Smed_3341	PWY-6627	salinosporamide A biosynthesis
Smed_3341	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Smed_3341	PWY-7179	purine deoxyribonucleosides degradation I
Smed_3341	PWY-7179-1	purine deoxyribonucleosides degradation
Smed_3342	PWY-7181	pyrimidine deoxyribonucleosides degradation
Smed_3343	PWY-7183	pyrimidine nucleobases salvage I
Smed_3344	PWY-6610	adenine and adenosine salvage IV
Smed_3345	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Smed_3359	PWY-5988	wound-induced proteolysis I
Smed_3359	PWY-6018	seed germination protein turnover
Smed_3369	PWY-2723	trehalose degradation V
Smed_3369	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Smed_3369	PWY-5661	GDP-glucose biosynthesis
Smed_3369	PWY-7238	sucrose biosynthesis II
Smed_3369	PWY-7385	1,3-propanediol biosynthesis (engineered)
Smed_3371	PWY-2941	L-lysine biosynthesis II
Smed_3371	PWY-2942	L-lysine biosynthesis III
Smed_3371	PWY-5097	L-lysine biosynthesis VI
Smed_3372	PWY-1622	formaldehyde assimilation I (serine pathway)
Smed_3372	PWY-5484	glycolysis II (from fructose 6-phosphate)
Smed_3410	PWY-6906	chitin derivatives degradation
Smed_3410	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Smed_3410	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Smed_3413	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Smed_3425	PWY-5057	L-valine degradation II
Smed_3425	PWY-5076	L-leucine degradation III
Smed_3425	PWY-5078	L-isoleucine degradation II
Smed_3425	PWY-5101	L-isoleucine biosynthesis II
Smed_3425	PWY-5103	L-isoleucine biosynthesis III
Smed_3425	PWY-5104	L-isoleucine biosynthesis IV
Smed_3425	PWY-5108	L-isoleucine biosynthesis V
Smed_3427	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Smed_3427	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Smed_3428	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Smed_3430	PWY-5381	pyridine nucleotide cycling (plants)
Smed_3448	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_3448	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_3448	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_3448	PWY-6113	superpathway of mycolate biosynthesis
Smed_3448	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_3448	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_3448	PWY-7096	triclosan resistance
Smed_3448	PWYG-321	mycolate biosynthesis
Smed_3450	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Smed_3450	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Smed_3450	PWY-5989	stearate biosynthesis II (bacteria and plants)
Smed_3450	PWY-5994	palmitate biosynthesis I (animals and fungi)
Smed_3450	PWY-6113	superpathway of mycolate biosynthesis
Smed_3450	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Smed_3450	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Smed_3450	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Smed_3450	PWYG-321	mycolate biosynthesis
Smed_3456	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Smed_3457	PWY-7205	CMP phosphorylation
Smed_3468	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_3509	PWY-5913	TCA cycle VI (obligate autotrophs)
Smed_3509	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
Smed_3509	PWY-6638	sulfolactate degradation III
Smed_3509	PWY-6642	(<i>R</i>)-cysteate degradation
Smed_3509	PWY-6643	coenzyme M biosynthesis II
Smed_3509	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Smed_3509	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Smed_3509	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Smed_3511	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_3517	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Smed_3540	PWY-5686	UMP biosynthesis
Smed_3549	PWY-6936	seleno-amino acid biosynthesis
Smed_3554	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Smed_3554	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Smed_3554	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Smed_3554	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Smed_3558	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
Smed_3559	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Smed_3572	PWY-5839	menaquinol-7 biosynthesis
Smed_3572	PWY-5844	menaquinol-9 biosynthesis
Smed_3572	PWY-5849	menaquinol-6 biosynthesis
Smed_3572	PWY-5890	menaquinol-10 biosynthesis
Smed_3572	PWY-5891	menaquinol-11 biosynthesis
Smed_3572	PWY-5892	menaquinol-12 biosynthesis
Smed_3572	PWY-5895	menaquinol-13 biosynthesis