SM2011_a6001 NONE
        fdoG NONE
        fdoH NONE
        fdoI NONE
        fdhE NONE
        selA NONE
SM2011_a0013 NONE
        selB   11360 ..   11377 +  -5.5  -3.06796   AAGGCGAGCTCGCAC             GTGGACCG CGA CGG-CCGC             TTAGATCAAATCCAA  49 133
SM2011_a0017   12227 ..   12258 +  -8.6  -3.34233   GAGAATACTTACAAA      GCGCG-CTACGATCG TTC CGGGCGTCGTCGCGC      TTATGAAAATTGTAG  64 189
SM2011_a0018 NONE
SM2011_a0020   13880 ..   13891 +  -7.2  -3.53811   CTATCCGCCTCAAGG                GCGC CCCT GCGC                 TTTCGCCACCATCCC  60 205
SM2011_a6007   14480 ..   14491 +  -2.2  -2.73124   AGGTGCCACACTGAG                GAGC ACGG GTTC                 GTTTAGAAGCTCGGA  39 111
SM2011_a5014   16242 ..   16256 +  -7.8  -3.57185   TCCTTTCCGGACGTC               GCCTGG CCC TCAGGC               TGTTATTTCCCTGGA  62 58
SM2011_a0036   23298 ..   23320 + -11.3  -2.73635   GCGTGAGACTGCCAC          CCGCGCGCTC TAAA GAGCG-GCGG           ATTTCGGGGAGTTTA  66 272
SM2011_a0041   25543 ..   25575 +  -6.2  -3.84514   GATCGAATCGACCGC      GCGCTCGAACGCAG CCTCA TTGCGTTCGGACGG      TTTGGTCGTTCCGCT  62 180
SM2011_a5015   27280 ..   27306 +  -4.2  -3.49668   CGGACCTGTGTCTGC         GCCAATCGGCTC TTC GTGCAGGTCGGC         TTCTATGACGACTTT  51 151
SM2011_a0050 NONE
SM2011_a0052 NONE
SM2011_a6012   28191 ..   28204 +  -3.1  -4.64766   TGCCGCCTCAGTAGC               CGA-CG ACG CGATCG               TTTTTCGGGTCTGCC  69 276
SM2011_a0062   33315 ..   33330 +  -2.4  -3.05715   TGGATGCCGCAGGCG              ATGCCC GTTA GGGCGC               TTCAGTCGAGCGGTT  41 15
SM2011_a0063 NONE
SM2011_a0064 NONE
SM2011_a0065 NONE
SM2011_a0067   37213 ..   37270 + -17.3  -3.07994   TCTTGCCCGAGCGAC TTCG-AGA-CTGGAGCGGGATGCGCGGC TTTCC GTC-CGCATCCCGCTCCGGCTCTCCGGA TTCGATCACGTTGAC  91 69
SM2011_a0070 NONE
SM2011_a0072 NONE
SM2011_a0074 NONE
SM2011_a0077   40867 ..   40887 +  -2.5  -4.28361   CTCCTGTTTGCTGCT            GTGCGGA AAATCGG TGCGCAC            TTTTCCTGGAATTGC  62 173
SM2011_a0078   41971 ..   41992 +  -2.8  -3.17956   TCGGCAGTCCTGCGG           CCGGCCCG CCTGAT CGCGCCCG            TTCCTGCCGTCATTT  45 13
SM2011_a0079 NONE
SM2011_a0081 NONE
SM2011_a0082 NONE
SM2011_a0083   45079 ..   45097 +  -3.9   -2.7728   TCCTCGGCCAGATCT            CCT-GATG GCCA CATCCAGG             TAATTGGAGTTTCGA  43 21
SM2011_a0085 NONE
SM2011_a0087   46565 ..   46583 +    -6  -2.52464   CGGCACGCGGCGTTT             CACATACG TAG CGTATATG             TGAGTTGACAGGCGC  48 187
SM2011_a0089   47188 ..   47222 +  -3.4  -3.05384   GGAACTTGAGACCGA     GCCTCCGCATTTCTTC GTG GAAGGACGAAGGAGGC     TTAGGTGAAAACGGC  43 111
SM2011_a0091   48051 ..   48062 +  -4.4  -3.03701   GTTCCTATGTTCCGC                CATG ACTG CATG                 TCTCCTTTCATCGGA  47 154
SM2011_a0093   49028 ..   49047 +  -3.5  -3.64703   AAGCGGCTGGCGTTC            CGGTCTA GATCCG TTGACCG             TTTCACTGAAACAGC  52 18
SM2011_a0095   50273 ..   50291 +  -4.4  -3.72576   TCGGCAGAGGCAGGC             ACGAGGCG GCG CGCGTCGA             TTTCCTCGCGCGCCA  56 175
SM2011_a0101 NONE
SM2011_a0104   54550 ..   54577 + -13.4  -2.59431   GTAAGACCTTGAGGG        GGAGGGGGTAGC TGCG GCTGCCCCCTCA         TCGATTGTCGCGGCC  74 37
SM2011_a0105 NONE
SM2011_a0106 NONE
SM2011_a0108 NONE
SM2011_a0110 NONE
SM2011_a5001   58950 ..   58966 +  -5.7  -3.53091   GCTACCCCGATCCAG              GACGGCG AAG CGTCGGC              TTTCCAAAAGAGGGT  55 361
SM2011_a0113 NONE
SM2011_a0114   62809 ..   62858 +  -9.9  -3.66378   CCACCAGACGGACAT CCGTCGCCACGAGTG-CACGGC CGGAATT GCCGTGGTGATCGAGGCGTCGG TTTGGATAAACTATG  72 178
SM2011_a0116 NONE
SM2011_a0117   64456 ..   64467 +  -4.4   -3.1811   GCCAGCAACATTAGC                TACG ACAT CGTA                 ATTTGTTATCGCAAA  49 27
SM2011_a0118   65690 ..   65714 +  -5.7  -4.39386   ATCTGATAATTGGGA          GCGCTCC AAACCAACACC GGAGCGC          TTTTCATGCTTTGCC  69 507
SM2011_a0126   68742 ..   68761 + -11.4  -4.21936   CAAGAGGTTCGAAGA            GGCCAGGC GAAT GTCTGGCC             TTTTCCCATTCTACG  88 84
SM2011_a0128   69195 ..   69219 +    -7  -3.05844   CGTAACACTTCAACA          CCTGCACCCG ATCCA CGGGCGCAGC          TGTTGCCCTGGCGGA  54 36
SM2011_a0130 NONE
SM2011_a0132   70643 ..   70657 +  -2.1  -3.67564   CGCCCCAAGGGGACA              TGG-GG CGCG CCACCA               TTTGAGTCGATGCTT  51 44
SM2011_a0136   73965 ..   73984 +    -2  -2.60571   GACTAGATCATAAGA            TGCCGC-CG GCA CGTGCGGAG            CTTACTTACGGCGTT  38 35
SM2011_a0137   76345 ..   76363 +  -5.3  -3.75738   GCGCCGCGCCGCCTC            GATCG-CG GCGA CGTCGATC             TTCTTCATGGTCATC  58 122
       rpoE6 NONE
SM2011_a0144   80012 ..   80033 +  -7.2  -4.07885   CCGGCCGTTACTCCT           GCGGACCG AAGAAC CGGTCCGG            TTTTCACAAGGAGTA  70 79
SM2011_a0149   82450 ..   82471 +  -2.9  -4.09685   TATGAAGAAACCATC           GGCGCGG AACTCGCC CTGCGTC            TTTTCGGGCATGCGC  58 467
        gtrA NONE
       pilQ2 NONE
SM2011_a0164 NONE
SM2011_a0166   91256 ..   91267 +  -7.2  -3.73534   ATGGCGTCGGTTTCC                CGCC GCCG GGCG                 TTGTTGATCCGCTTC  63 45
SM2011_a0168 NONE
SM2011_a0169   93103 ..   93126 +  -2.3  -3.35542   AGTTCCGGTCCGTTC          GAGGCGGTG GAATCG CGGTGCCTC           CTTTTTGCGACTGCA  46 150
SM2011_a0172   95267 ..   95299 +  -3.1  -4.13767   GCGCCAAGCAGCAGG      CGACCGAAGCCGCCG ACA CGGCCGCTGCCGCAG      TTTTCCAGTGGCGCG  60 233
SM2011_a6043   97283 ..   97293 +  -4.6  -2.52464   CCATACTGAAGGTCG                 GCGG GTC CTGC                 TCCCTTCAAGGAGAG  43 60
SM2011_a0180  100027 ..  100069 +   -28  -3.03338   CGCGTAGCCTCATGG ACAGAGCGCCTCAGTGTTTC AAT GAAACACTGAGGCGCTCTGG TCTTGCCGGAATTCT 100 79
SM2011_a0185  102269 ..  102285 +  -2.9  -3.39862   GGTCTCGCCCAAACC              TTTTGGC CTC GCCAACG              TTCTACCTCCTTAAT  47 120
SM2011_a0187  103362 ..  103393 + -12.2  -3.73224   TGCGGAATTCCCGAA      GGACCGTAGCGGCG GGAA TGCCGCTTCGGTAC       TTTGGTAGGCGCTGC  81 119
SM2011_a0189 NONE
SM2011_a0190  105295 ..  105306 +  -5.8  -4.16016   GCCATGGAGAGCCCC                GCGA CCAA TCGC                 TTTCTTGCCAAGTGC  66 466
SM2011_a0204 NONE
SM2011_a0206 NONE
SM2011_a0209  115572 ..  115584 +  -4.7  -4.15833   ATGTAAGCGATGGCG                GCCGC TTC GAGGC                TTTTGCACTCCTCCT  65 175
        gtrB  122852 ..  122881 +  -6.3  -2.66291   CTCGATCTTCGAGGG       TCGG-GCCGCTCCC CGC GAGTGCGGCGTCGA       TCATCTCCGTCTGTC  48 434
SM2011_a0224  124703 ..  124723 +  -2.6  -2.77899   GTGGCGTGGCTCTGG           CTGCCGAGCA AAT TGC-CGG-AG           TAATTACTCCCAACG  39 2
SM2011_a0226  125949 ..  125972 +  -3.8  -2.64803   GGAATTTGCGGCCCT          ATTCGAGGTC CGGT GGCTTCGAAG           TGCGTTTCCGCCTGC  42 56
        gdhA  127451 ..  127506 +  -7.5  -3.17392   GCCGGGGGCGATCAA GCCGTTCGGGGTGCGTGCCGC-GGTGT TTCC GCACTAGCGGCACTGACCC-GGGCGAC TTGACTTCCCCGATG  56 45
        rnk2  128273 ..  128307 +  -9.9  -2.59971   CACCGCAGGCTCGTA    GCCCTGTGCCGAACCG CTCG CGGC-CGGCGCAGGGA     GTTCCTGTCTCGTCA  60 126
SM2011_a0232  129114 ..  129128 +  -4.2  -2.79831   CGCGCGCCATAGCGT               TTGCGG TAC CCTCAA               TATCGTAGGGATTGA  42 196
SM2011_a0244  136035 ..  136053 +  -3.8  -3.40403   GGAGATGATCATGAA             TCCCGGTT GTC AACTGAGA             TTCTAATAGGGAGAG  49 1
        gntR  136896 ..  136937 +  -7.4  -2.65354   AAGTCATACTAGAAG CAGGTCATCTCGTTGTCAG ACATC CTGACAAT-AGAGGACCCG TACCTTTGAGGTACG  50 137
SM2011_a0247 NONE
        gntA  138670 ..  138681 +  -2.2  -3.17219   GACTCTTGAGCAGCT                G-GCG GAG CGCAC                TTAATGACCCTTGTC  41 10
        gntB NONE
        gntC  141073 ..  141096 +   -16  -4.47551   TATGCCTTCCAGGAA          GCCCACGGTC GACC GGCCGTGGGC           TTTTATCGATTCCGT 100 80
SM2011_a0254  141847 ..  141859 + -10.5  -2.93073   TATGCAGGCAAAAAC                GGCCG TCC CGGCC                TGATTGTTGCCGACG  64 10
SM2011_a0255  143035 ..  143079 +  -7.1  -2.62579   CCGGCGCAAAACGAT CCTAGAGCATTTCCGCTTTTC TCC GAATTGCGGAAACGCTCTACC CCTTTGTTTTGCCGC  50 91
SM2011_a0267 NONE
SM2011_a0270 NONE
SM2011_a0271 NONE
SM2011_a0273 NONE
SM2011_a0275  155121 ..  155149 +  -4.4  -3.14132   GAGATCGACGACGGC        GTGCCCTCGGGT GGTCG GCCCGAGGGAGA        TTGCTGCCAAAGCCA  47 53
SM2011_a0281  158454 ..  158464 +  -3.2  -3.60627   GTGTCCCATCCTGGC                 TTCC TTT GGAG                 TTTGAGCTCGGATCA  49 10
SM2011_a0291  162003 ..  162035 +    -5  -3.02043   TTGCTACGATCATTT     GTGACATGA-CGAAA GGCT TTTCGATCATGATAC      TCTTAGGAACGCCTT  47 379
SM2011_a0303  170012 ..  170027 +  -2.4  -4.18018   ATCGAAGGATGTCGG              CTGCGC CAGC GCTCGG               TTTTCCGTCGCCAGC  59 430
SM2011_a0308  173734 ..  173752 +    -6  -3.62597   AGGCGGATCCGTGAA             GAGGCT CCACAAC AGCCTC             TTCTTCCGCGGTGAC  58 72
SM2011_a0312 NONE
SM2011_a0314  175799 ..  175831 + -20.7  -2.90309   CAGTAGCCCAGAAAT      GATCACGCCGGCATT ATC ATTGCCGGCGTGATC      TCCTCTTCTTTCGCC 100 35
SM2011_a0316  177457 ..  177495 +    -3  -4.75288   ACTTGCGACGTTGAT   GTGGATTTCATCTGCCTC AAA GAGTCAGAAGAGACCGGC   TTTATTTTCCTATCG  73 348
SM2011_a0319  178704 ..  178716 +  -9.1  -3.21695   CCCCGAGAGAAGGGC                GCCGA CGA TCGGC                TTAAATTCCTCCTCG  63 90
SM2011_a0320  179539 ..  179584 +  -9.6  -2.64099   GGGTTGGTAACAGAC CGGCCCTGAAGGGTCCCTGC CCCAAT GCAGGGACCTCTCAAGGGAG ATTGTCATGAAGGAA  60 31
SM2011_a0322 NONE
SM2011_a0323  180495 ..  180514 +  -4.9  -2.60615   GCAAGATCGCGACAG            CTCCCGC AAAGGC GCGGCAG             ATCTTTCCCAGGCAT  43 46
SM2011_a0325 NONE
SM2011_a0326 NONE
SM2011_a0329  182578 ..  182607 + -18.7   -2.8478   GGCAAATGAAAACGC       GAGAAGCCCGGAC CATC GTCCGGGCTTTTC        CTTTGATCGGGTGGT 100 32
SM2011_a0341  186577 ..  186587 +  -8.2  -3.29147   CGCCGCCTACTTGCC                 CGGC TTG GCCG                 TTGCATTGTCTTCAG  59 219
SM2011_a0347  188823 ..  188865 +  -8.4  -3.24021   AATCTTGATGAAATC GTCAAGACGGCTCGCCGGT CTGAAC ACAGGCGAGCCG-CGTAAC TTCAGTCTTTCAGCA  63 290
SM2011_a0353 NONE
SM2011_a0355 NONE
SM2011_a6069  192320 ..  192338 +  -4.5  -2.98088   AATGTACGGTACCGG             GCAGCTT CGCTC ATGCTGC             TCTATCGATTTCCGG  46 51
SM2011_a0364 NONE
SM2011_a0367  197508 ..  197524 +  -3.5  -3.87149   AGTGCTAGACCGGCT              CGACGCC CTC GCCGCCG              TTTCGGTTTCCTCAG  55 60
SM2011_a0369  198158 ..  198200 +  -9.9  -3.07816   CGGTCCGTGCGGTTC TGGT--CCGCCCAGGTCACCG CCA CGGTTGCCTGGTCGGTCACCA TTAGGTCGGTCGAGA  64 346
SM2011_a0374  200739 ..  200770 + -23.8  -3.06302   TGAGAGTTGGAACGT      CAGCGCCGCGATCC GAAA GGGTCGCGGCGCTG       TTCCGTCCAAGTGCT 100 51
SM2011_a0376  201732 ..  201761 + -21.5  -2.71712   GTAAGGGCCTGATCC       GGCCGCTCCGATC ACCC GGTCGGAGCGGCC        CTTTCGCAACCGGAG 100 37
SM2011_a5018 NONE
SM2011_a0380 NONE
SM2011_a5019 NONE
SM2011_a0383  206398 ..  206434 + -10.9   -3.0353   GCTTGTCGTGGGTGA   ACGAGGGCGCTC--CCC ATGAC GGGTTGAGCGCCCTCGG   CTTGTTTCTCCCACG  69 170
SM2011_a0389  210744 ..  210755 +  -5.8  -3.15231   GGGTGCAAACCGTAC                GACG GACC CGTC                 TTGACTGCTTGTCAT  49 74
SM2011_a0391 NONE
SM2011_a0392  213291 ..  213320 + -19.3  -2.72471   AGGGCTGATGCCTTA       TCTGCCCGCCGCA CCCT TGCGGCGGGCAGC        CTTCTCTCGTGAAAC 100 33
SM2011_a0394 NONE
SM2011_a0396 NONE
       hisD2 NONE
SM2011_a0400  217463 ..  217486 +  -3.8  -2.90723   AGACGATCATCGAGG          TGGCGGG-CTG AAC CGGATCCGTCA          TGTCATTCCGAATGC  44 15
SM2011_a0402 NONE
SM2011_a0403 NONE
SM2011_a0404  220751 ..  220767 +  -9.3  -5.00616   GTCTCGACACTCTGA              CGGAGCG CCG CGCGCCG              TTTTTTAGGGCCGGG 100 26
SM2011_a0407  222879 ..  222901 +  -4.1  -3.04144   AAGCGTGCCGCAGCT           TCCCGTC ATCGGTCCA GGCGGGA           TATTCAACCTCAGCG  45 373
SM2011_a0414 NONE
SM2011_a0417 NONE
SM2011_a5020 NONE
SM2011_a0421 NONE
SM2011_a5021  229119 ..  229131 +  -4.7  -4.08221   GGTTCTTGCCCTTGA                GCGGC ACG GCCGG                TTTACTTGTCTTCAG  63 224
SM2011_a0433  234119 ..  234129 +  -3.2  -4.56775   ATTCCCCCTGTCCGA                 GTTC GCC GAGC                 TTTTTGCCGGGAACT  69 449
SM2011_a5022 NONE
SM2011_a5023  236571 ..  236581 +  -6.8  -3.29471   TGCGAACTGATGAAC                 TCGC GCG GCGA                 TTGATATCCTAAAGC  55 137
SM2011_a0447  239665 ..  239696 + -14.4  -3.41341   GCTTCCCGTGAGACA      TCGGTGAAGGCGCC CATC GGCGCCGTCACCAA       TCTTTCGATGCCGTT  87 376
SM2011_a0450  241027 ..  241057 + -16.2  -3.71649   GAGCCGACCTGAGCA      GGCAGCGCCCTGC CTCGCC GC-GGGCGCTGCC       TTTACAATTTCGCCG 100 115
SM2011_a6097  242340 ..  242350 +  -6.8  -3.52919   TGAAAGTAGGCTGAC                 CACC AGG GGTG                 TTCTCGTTCCGTGCT  60 247
SM2011_a6099  242801 ..  242813 +  -6.9  -2.70259   GCGTCAAGACGCCCA                GCCGC GAT GTGGC                CTTCTGATGTATCTA  50 6
SM2011_a0453  243596 ..  243608 +  -4.7  -3.52877   AGGATTATATAATTC                CGGCC ACA GACCG                TTATGATGTATTCGT  53 394
SM2011_a6103  244676 ..  244697 +  -6.5  -3.14564   GCGTATGCGCCACCT           GATGCGCGT GCTC GCGTGCGTC            TTCATGGACGGCTGA  52 326
SM2011_a0461  246037 ..  246047 +  -6.8  -3.05914   TTTGGTCAGCGGCAT                 TCGC AAC GCGA                 TCTCTATGGTTGCGT  54 79
SM2011_a0466  253307 ..  253320 +  -2.3  -4.19276   GAGATGGTGCGCAAG               TAGGC GGCC GCCCA                TTTTCCACGTTTTCG  59 42
SM2011_a0467 NONE
SM2011_a0469 NONE
SM2011_a0470  257594 ..  257610 +  -2.1  -4.06678   GTAGCGACTAGCCGA              GCCCCAA ACC TCGGGTC              TTTATCTGCGTGGCT  56 392
SM2011_a0471 NONE
SM2011_a0473  258573 ..  258585 +  -2.6  -4.82901   GTATTTGGAATTATT                GCGT AAAAC GCGC                TTTTTGTGCGGGCAA  70 110
SM2011_a0475 NONE
SM2011_a0496  270780 ..  270797 +  -3.3  -4.21438   GAGACCTGCGGGAGT             GCGCGTA CGAT TGCGCCC              TTGTTTGTTCCGATG  61 164
SM2011_a0499 NONE
SM2011_a0501  273069 ..  273106 +  -5.6  -2.63616   CGCGCCGCCGCCTGC  TCGGGAGGGCCTGAGATG CGCA CGT-TC-GGCTCCCCCGA   ATTCCTGTTCATCGT  46 12
SM2011_a0503 NONE
SM2011_a0506 NONE
SM2011_a0508  275376 ..  275389 +  -2.3  -2.83403   CGCGGAAGTAGGCTG               AGCCT CGCG AGGCA                GTTTCGTCCGCCCCA  39 25
SM2011_a0510 NONE
        idnD NONE
       idnO1 NONE
        idnK NONE
SM2011_a0516 NONE
SM2011_a0518  280277 ..  280292 +  -5.4  -3.71279   TTGGCGTTTGATTTA              TGCAAG CCGA CTTGCG               TTCATTTTACATCTT  58 306
SM2011_a0520  281199 ..  281219 +  -2.5  -4.17023   TTGAGGGACGCTGAG            CGCCG AAGGGGGGTGG CGGCG            TTTTGGCATGCTTGG  59 27
SM2011_a0522 NONE
SM2011_a0523 NONE
SM2011_a0525 NONE
SM2011_a0526 NONE
SM2011_a0527  286360 ..  286383 +    -3  -3.05816   ACTATCTGCTCTGCG          ACGCTTTCGCC ACT GGCG-ACGCGC          TTGGGTACGAAATGG  43 505
SM2011_a0537 NONE
SM2011_a0538  288563 ..  288577 +  -8.5  -4.08945   ACGAAGGATCTGGAC               CGGCG GTTGA CGCCG               TTTTCGCGGCCTGGT  75 223
SM2011_a0541 NONE
SM2011_a0543  290706 ..  290732 +  -3.6  -3.14211   TCGTGACGGTGATCC         GAGCGCTCTT GAGCCGG AGGGGCGCGC         TTGGTCGCGGCGACT  45 112
SM2011_a0551 NONE
SM2011_a0552 NONE
SM2011_a0554  294615 ..  294625 +  -6.8  -2.73903   AGTGGTACTTCGTCC                 GTCG CCG CGAC                 ATTTCGACCGATTTT  51 110
SM2011_a0558 NONE
SM2011_a0559  297536 ..  297550 +  -2.8  -3.61398   CGTGATGCCATGCCC               GATGCT CGA AGGATC               TTCTTCGCCGGCGCG  49 108
SM2011_a0561 NONE
SM2011_a0563 NONE
SM2011_a0564  300173 ..  300189 +  -5.8  -3.36991   GCGCTCAGCCTGAGA              CTTCGG CAATC CCGAGG              TGTTTGACCATCATG  53 49
SM2011_a5026 NONE
SM2011_a0567  301488 ..  301498 +  -4.6  -4.03234   AGGCCGTCTTGAAGT                 TGCG CCT CGCG                 TTTATGTAGGACGAC  62 90
SM2011_a0572  304991 ..  305010 +  -3.6  -3.07307   CGCGCGCTCAAGAAC            TTGCGCGAT CCC ATC-CGCGA            TTGCGTCAGCCTTTC  43 474
SM2011_a0575 NONE
SM2011_a0576  307185 ..  307210 +  -4.6  -3.15758   CCGGAAGCTAGGGGG         TGCCGCGATG TTTGAC CGTCTCGGCG          TTCGTGGCAGATTGT  47 209
        cyaN  309863 ..  309882 +  -4.9    -3.767   CGCGGCTCAGGTTTG            GTTGCGC CGACAA GCGCACC             TTTGATGGCTCCATC  56 237
SM2011_a0590  314716 ..  314727 +  -2.2  -4.62336   CGGACAAAACGGCCT                TCCG CGAA TGGA                 TTTTTACGCTAGAGT  66 316
SM2011_a0592 NONE
SM2011_a0594  317222 ..  317244 + -14.9  -3.55444   TAATCTGGTACGCAA           GCCGGCGTT GCACA AACGCCGGC           TTTGAACCCTCAAGA  88 126
SM2011_a0604 NONE
SM2011_a0606  323213 ..  323224 +  -2.2  -2.71681   GGCCGCTACGTCGTC                GTCT ACGT GGAC                 TGATTCCAGCAATTA  39 11
SM2011_a0607 NONE
SM2011_a0609 NONE
SM2011_a0610  326306 ..  326321 +  -3.2  -3.07013   GGGACATGGCAGCCA              CCCG GCGTGAAA CGGG               TCTCTTAGAGACATG  43 2
       fixN3 NONE
       fixO3 NONE
       fixQ3 NONE
       fixP3  330159 ..  330176 +  -4.7  -2.72745   CTCCTAGCCTGGTGG             GGCCTCG TCGC TGCGGCC              ATCTTTGTCGGTGCC  44 73
SM2011_a0620 NONE
       fixI2  333395 ..  333416 +  -2.4  -2.82635   ACCAAACCAGCCACG           GCAAAGATA TGAAT TATCTT-GC           TCTCCTCGTCCCGGT  39 14
       fixS2  333812 ..  333822 +  -2.4  -3.55563   GGTATCGTTTTCCTG                 TCGG ATT CCGC                 TTTCGGGGCTGCCGT  47 174
SM2011_a0625  334439 ..  334451 +  -4.7  -3.84825   CCGTCTTGCCGCTTT                GCGCC GGT GACGC                TTTGCTATGGGTCGG  59 208
SM2011_a0626 NONE
SM2011_a6149 NONE
       aqpZ2  337409 ..  337419 +  -4.6  -3.69434   TCACTCGAGAACTTC                 CCTG CGG CGGG                 TTTCGAATTCGTTAC  56 308
SM2011_a0636  341898 ..  341910 +  -7.7  -3.39529   AAGGAAGAATCTCGA                CCGAA GAC TTCGG                TTGCTATTGAATTGG  58 110
SM2011_a0637 NONE
SM2011_a0638  343230 ..  343267 +  -4.9  -2.79912   GGAACCCTGCAGAAT   TCTAAGCG-TTACGTAGG GGC CGCACGTAAGCGCTTCGA   TCGATTCTTTTTGGC  44 359
SM2011_a0639  343733 ..  343744 +  -5.8  -3.72695   GGCCGCTCAGCGCGT                GTCC GGCA GGAC                 TTTCATGGCGAGCGT  58 53
SM2011_a0640  344339 ..  344354 +  -3.9  -3.70068   TGCGGTATCTTACCG              GCTGG CCCCTT CCGGC               TTTGCCCTTGTAATC  54 149
SM2011_a0645  345700 ..  345713 +  -2.3  -2.84634   CCCGGTCGCGCCGGC               ACTCG GGAA CGAGA                TCTGCTCGTCTACGA  39 72
SM2011_a0647 NONE
SM2011_a0649  346407 ..  346424 +  -3.4  -4.07568   GCGCCGCCGCCCGTA             GGCATCG CAGAA CGA-GCC             TTTTCCAGCAGCGAC  58 112
SM2011_a0657 NONE
SM2011_a0659  349769 ..  349779 +  -6.8   -3.1506   TGGAGAGTGCACGCC                 GGTC ACA GACC                 TTCATGAAGAGCTTT  54 112
SM2011_a0661  350652 ..  350673 +  -4.4  -3.85698   AGCGCCATGCAACTC           GATGAAGC CCCTGT GCTTCAGC            TTTGTCAGCGAGCGC  58 149
SM2011_a0664  353597 ..  353609 +  -5.5  -3.16921   CAGCCCTTCCGATCC                TACGG TGT CCGTG                TTCATCCAGATTAAT  51 119
SM2011_a0667 NONE
SM2011_a0669 NONE
SM2011_a0670  358179 ..  358189 +  -2.4  -3.96624   TGGACACCTTCACTG                 CGGC CAG GGCG                 TTTGTCATGACGATG  56 330
SM2011_a0673 NONE
       arcA1  376622 ..  376634 +  -3.3  -2.67244   CCGGGTTTCAGCAAA                TGGAG CAG CACCA                TGAGTTTCAATCTCC  40 49
        arcB NONE
        arcC  378789 ..  378809 +  -2.6  -3.65351   CTGATAATTATGCTG           CGAGATGCGG CTT CCG-ATC-CG           TTTGACTGAAAGTGG  51 199
SM2011_a0699  379659 ..  379688 +  -6.3  -3.40403   CGGCAAGGCGGTGTT       CGCTACACTGTCG GCGG CGACAATGGCGCG        TTCTGGTCGACCCGC  56 380
SM2011_a0702  380219 ..  380229 +    -4  -3.71487   TCGTCATCCTGCCCG                 TGAT TAC ATCA                 TTGTTCAGTGTGCTG  54 100
SM2011_a0707 NONE
SM2011_a0708 NONE
SM2011_a0709 NONE
SM2011_a0710 NONE
SM2011_a0711 NONE
SM2011_a0713 NONE
SM2011_a0715 NONE
SM2011_a0717 NONE
SM2011_a0719  391543 ..  391569 + -10.3  -2.78384   GGAATACGGCATTCT        GCGACATGGATT TCCA AATCC-TGTCGC         TCTCCTACAGGACAC  63 155
SM2011_a0723  393380 ..  393400 +  -3.1  -4.54727   CCGCAGCCAAATCAT            CCCCTCACC ATC GGTGGTGGC            TTTTCGTTTCGAGGA  66 456
SM2011_a0726  394232 ..  394243 +  -7.2   -4.0371   CCCATCCGGCCGGCT                GCCG AGCT CGGC                 TTTCTCTGGACCGTA  68 326
SM2011_a0728 NONE
SM2011_a0731  395418 ..  395430 +  -3.3   -3.2032   CCAGCTATCCGGGGA                CTGGC GTT GGCAG                CTTTTCATGTCCGGC  45 202
SM2011_a0734 NONE
SM2011_a0736  396214 ..  396229 +    -6  -4.81249   ATATGCAATCACGGA              AGCGGG GGAT CCCGCG               TTTTTCGCTTTGAGC  82 192
SM2011_a0740  397719 ..  397745 +  -4.5  -3.41222   CTAATGTGTCTCTAT        CGATCAC-GG AGGCCTGG CCAGTGATCG         TGTTTGAGCTTGCCG  51 37
SM2011_a0747  401431 ..  401446 +    -9  -3.47227   GACCAAGCAGTATGA              CATCGG CATT CCGATG               TTCTGCTCGTTCAGA  64 26
SM2011_a0748  402485 ..  402510 +  -8.2   -3.0634   TTTCCGCCTCGATTA         TGCTGCCGCC ATCATC GGCGTCAGCG          TGTTGAAGTAAGCTT  57 261
SM2011_a0751 NONE
SM2011_a0752 NONE
SM2011_a0753  407168 ..  407182 +  -5.6  -3.09492   CTGTGAGGAAAAGTG               GACCGG CGA CAGGTC               TATTAGAGTTCACGA  49 35
SM2011_a0754  407861 ..  407874 +  -3.1   -3.0814   GTCAACCAACTTAGT               TCGAA ACGG TTCGG                TGTTGCGATGTCGGT  43 118
       nodD2  409878 ..  409888 +  -3.2  -4.62471   CCAGAAATCAACCAT                 TCGA GAG TCGG                 TTTTTGACGCTTGCC  69 55
SM2011_a0758  411413 ..  411440 +  -2.7  -4.14541   GGCATCCCAACTCGA        ACGATCG-GGAC TGAGC GTCCACGATTGG        TTTCTCTGCTTGATC  59 94
SM2011_a0759  411961 ..  411972 +  -7.2   -3.1505   GCAATGCGGTGCGTT                GCCG CAAG CGGC                 TTAATGGCGGCTCGT  54 10
       fixT2  412426 ..  412445 +  -2.8  -2.81547   CGAATTGGCAATCTG            TCCCCGCAT CGA ACG-GGGGA            TAATTCATGTACGCC  41 79
       fixK2  413081 ..  413095 +  -3.4  -2.71731   GCTGCGTTCGCTCTG               CAGCTG AGC CGGCAG               TGGTTGCGCGCTCAG  41 19
SM2011_a0763  413759 ..  413774 +  -2.5  -2.57211   TGATCTGAATCAAGG              TGCCG AAGCTA TGGCA               ATTCTCGAACGACGT  38 38
       fixN2  415471 ..  415485 +  -3.5  -2.61383   ACCGGCGGAATAGGA               GGGCA GATTA TGTCC               ATTCTCGATAAACAT  40 28
       fixO2 NONE
       fixQ2 NONE
       fixP2  417294 ..  417308 +  -4.2  -3.67597   TGGCCGGCGCAGCGA               CTTCCC TCT GTGAAG               TTGTTCACTGCCGCG  54 77
SM2011_a0771 NONE
        nodL  418905 ..  418925 +  -2.5  -5.00616   CGGATACTGGAATAA            GATCAGATG GGC TGTCAGATC            TTTTTTAGGCCGGGA  74 372
        noeA NONE
        noeB  422528 ..  422563 +  -6.3  -4.66537   CGGACAGCGTGGTGT   TGCCTGGAACG-GACGCG CTT TGCGTCTCGTTC--GGCA   TTTTCTCTTCGGCAA  78 509
SM2011_a5028  425029 ..  425045 +  -2.2  -3.62518   AGGCAACGGGTAAGG              CCCGAT AATGC ATGGGG              TTTGGCGATATTTGA  47 111
SM2011_a0781  425594 ..  425614 +  -4.6  -2.60496   CGACGCACGCAATCG            CCATGTCG GAGAG CGGCAAGG            ATGTTTACGAAGCGC  43 46
SM2011_a0783 NONE
SM2011_a0785  428204 ..  428226 +  -4.1  -3.01712   TGCTCCCAGAACCGC          CACGAACAGG TGCG CCTGC-CGTG           TCTTGCCGGACAGCC  44 290
SM2011_a0789  430119 ..  430142 +  -3.8  -5.14563   GATCAAAGCGCTCGG          TTTGCGTTCG CCCT CAATCGCAAA           TTTTTTCCTACCAAA  81 346
SM2011_a0791 NONE
SM2011_a0792 NONE
SM2011_a0793 NONE
SM2011_a0794 NONE
SM2011_a0796 NONE
SM2011_a0797 NONE
SM2011_a0799  436588 ..  436608 +  -5.3  -3.53012   GGTCGCTCCGGCAGC            CGGAAAGCG GCG CGCCTTGCG            TTTAGGGAGGAGAAA  55 80
SM2011_a0800 NONE
SM2011_a0802 NONE
SM2011_a0803 NONE
       gabD4  441057 ..  441069 +  -9.1  -3.14454   CCAGAACGCTTAAAG                CAGCC TCA GGCTG                TCTTGACTGCTTTGT  60 149
       syrB3  441798 ..  441814 +  -2.1  -3.76413   GTCGTTCTCCGCGCT              ACGCGAG GGG CTCCCGA              TTTGGCATTTTCGCC  51 75
SM2011_a0809  442624 ..  442647 +  -4.4  -2.58714   GAGCCCGAGTTTCGC          GGATAGCCCC GGGA GAGGCTGCCC           TACCTTGATGTCGCC  43 20
SM2011_a0824  452968 ..  452978 +  -3.2  -3.86897   ACGCACGGCGGCAAT                 TCGT TGA GCGA                 TTTCTGACGCGTGAC  55 8
        nifH NONE
        nifD NONE
        nifK NONE
        nifE  459150 ..  459163 +  -3.7  -4.37886   TTTGTTAGAGGTTTG               CCCGC TGCA GCGTG                TTTTCTGCGCGATAC  65 348
        nifX  460088 ..  460125 +  -9.8  -2.72144   GAAAGATCTCAATGA   TCTCGCCGGCGGAGAG TTCCGC CGTTCCGCCAGTGAGA    GTTTAGGGCGAGTGC  61 290
SM2011_a0833 NONE
        fdxB NONE
SM2011_a5036 NONE
SM2011_a0835  461749 ..  461761 +  -3.3   -2.6063   AGCTTCAAATGATCC                GCCGA AGA TCCGC                TAAATTATACCTGGG  40 54
        syrA  462254 ..  462274 +  -7.5  -2.70932   CTTTCACCAGTTCGA            GTGGATGCC ATT GGCGTTCGC            TGCTTCGCACCGACC  51 163
SM2011_a0848 NONE
        syrM  467214 ..  467235 +  -5.7  -4.25104   CGCGCCTACCACATG           CGGCTGGGT CCAG ACACCGCCG            TTTTCGTCAACCGGC  66 181
        nodF  469554 ..  469568 +  -3.4  -3.05384   AGCCATCCGAGGCTT               GCTCAC TAA GGGGGC               TTGAATGGACAGGCG  43 7
        nodE  470773 ..  470786 +  -4.5  -2.61216   GTTCTGGCATTCAAG               CAGGT ATGA GCCTG                TCAGTTGCTTCCTCG  43 17
        nodG  472023 ..  472040 +  -4.8  -3.29324   TTTGAAGGCGGTCGG             GCCTAC GGATGA GTGGGC              TTGCATTTGCATACG  49 36
       nodP1  473309 ..  473320 +  -2.2   -2.7012   GAGAAAAAGAAGCGG                GAGG GCTA CTTC                 TGATGTCGTATGTTC  38 11
       nodQ1  475642 ..  475666 +  -8.5  -3.35371   AGCCGCCAATGCGCA          GGCCATGCTGT CGG ACAGTGAGGCC          TTGATTGCCAGTCTG  64 419
       nodD1  482638 ..  482652 + -12.8  -3.34192   CCTTTTCGGGTCGTG               GCGGCG CCC CGCCGC               TTCCTTCAGGCACTT  79 267
SM2011_a0872  483415 ..  483427 +  -3.4  -2.92475   AGACCGAAGAAAGCT                GATG GTCCG CATC                CTTTCTCAGACTAAA  42 24
        nifN  484772 ..  484806 +  -9.2  -3.15544   TATTCGCGCTCCGAT     GGCGGGTGCATCCAGA ACA TCGGGATGCATGCACC     TTCATCAAGCTGCCA  64 56
SM2011_a0883  493654 ..  493667 +  -3.8  -4.07885   TCGGAGGACGTGTCT               TCCG CGCCGA CGGA                TTTTCGCACCCGGTC  60 351
SM2011_a0887 NONE
SM2011_a0888 NONE
SM2011_a0890 NONE
       dnaE3  500328 ..  500360 +  -2.1  -2.92667   TAGAGCGCCGGAGCG    CGGCT--CC-TGGTCG TCAC CGACTAAGGTCAGCCG     TCATTTAAGGCTTCG  40 38
SM2011_a0894  500737 ..  500753 +  -6.5  -3.41053   GGGGTAGGTCGATAC              CGTAGTC GCT GACGACG              TTGTGGGTCATTTCG  56 34
SM2011_a0896  501902 ..  501915 +  -2.3  -4.18197   GACGAGATGAAGCTC               GGCCA GGCT TGGCA                TTTTCGATCACCAAT  59 313
SM2011_a0900  502773 ..  502802 +    -5  -3.89354   TCTTCCACCCCACCA      GCCCGG-TG-TCGC GACA GCGATCAGCCGGGA       TTCTTCGTTTGAGGA  59 117
SM2011_a0903  504060 ..  504081 + -14.4  -3.60792   ATCAATCCCCTTCAT           CGCCCGGC CATTGT GCCGGGCG            TTTCCGCATTCAGAA  88 68
SM2011_a0905  504717 ..  504728 +  -2.2  -2.51547   GTCTATCATATTGGT                GAGT GCCT GCTC                 GTATTCATCTCCGGC  37 234
SM2011_a0909 NONE
SM2011_a0911  508350 ..  508374 + -14.9  -3.06796   AGAAACCCTCCCTCA          GCCGCCCGGCG CTA CGCTGGGCCGC          TTCGCTGCGCTCGCG  85 236
SM2011_a0914  509399 ..  509414 + -11.8  -4.65078   GCAGGCTTCGGGAAG              CGGCGC GTAA GCGCCG               TTTTCTTGCAAATCT 100 16
SM2011_a0917  510183 ..  510207 +  -7.8  -3.53224   GCAGCAGACATCAAC         TCCCCGC-CGC GTCG GCGTGCGGGAA          TTTCGCGGCAACCTG  62 337
SM2011_a5006  511276 ..  511288 +  -2.7  -4.35747   CTCGAGCCGAAATTT                TTGAA AAA TTCGA                TTTCGTTTCTTTTTC  62 504
SM2011_a0922  511753 ..  511776 + -19.6  -3.64682   TGACGAGCCAAGCGA          GCGGCCCCGA GCAA TCGGGGCCGC           TTTCGCCGTTTCATC 100 38
SM2011_a6231  512943 ..  512953 +  -8.2  -3.46982   GACGTTTTCCGATTT                 GCGC GAT GCGC                 TGTTCTTCGTGTCCC  63 258
       traA1  520454 ..  520468 +  -5.6  -3.36749   GCTGTCTCCCCCTTC               TGCGCC GCG GCCGCA               TTCCTCTTCGCGATC  52 507
SM2011_a0939  524764 ..  524779 +  -3.9  -2.75064   TCGCTTTGTCCTGCC              CCTCG CGCGAC CGGGG               TGATTCAGTGGGCCC  43 7
SM2011_a0940 NONE
SM2011_a0941  526080 ..  526091 +  -3.6  -3.26471   ACCGAAGTGGCCGGA                CGCC CGCG GGTG                 TTGGTGTCACCATGC  47 200
SM2011_a0943 NONE
SM2011_a0945  528536 ..  528547 +  -3.6  -3.68529   CTTCAACTGCCCAGC                GTGC AGAT GCGC                 TTTCCCTCCTGGAAT  54 149
SM2011_a6233  528813 ..  528831 +  -2.3  -2.58861   TGTGAAAGTGGCGCT             CTCGGGT GGCGA ACCTGCG             GTTATGCAGATCGTC  38 48
SM2011_a0947  529202 ..  529219 + -12.7  -2.73124   ATCCATCAGCCATCG             GCCGCGA CCGA TCGCGGC              GTTTGGCAACTCGGA  73 95
SM2011_a0955 NONE
SM2011_a0956 NONE
SM2011_a0958 NONE
SM2011_a0959 NONE
SM2011_a0961  539117 ..  539132 +  -6.1  -2.87931   CCTCTGAGCAGATGA              CCGCT AGGTCA AGCGG               TCTCTGAGCCGTAGG  51 70
SM2011_a0969  541559 ..  541588 +  -5.1  -2.59564   ACAAACGAAATAAAG       CTCCCGTACATT CTGTTCA AGTGT-CGGGAG       ATTGTCGAATGGAAG  43 170
SM2011_a0972 NONE
SM2011_a0974  543385 ..  543399 +    -7  -3.61398   GCTGTGGCGCCGGTT               GCTCGG CCG CCGCGC               TTCTTCGAGACGAGA  60 146
SM2011_a0990  549512 ..  549525 +  -5.9   -3.2614   CGACGGAGATGATAT               GGGCG TTGA TGCCC                TTGATGTCGCCAGTG  51 42
SM2011_a0992  550046 ..  550060 +  -8.6  -3.43217   ATCAGTGAGCCAGCC               GGAATG TTC CATTCC               TTGCTTAGCTTTCGG  63 116
SM2011_a0998  553766 ..  553793 + -10.6  -3.18429   TGAATGAATATCGAT        CGTGAG-CACGCT GGT GGCGTGGCTCGCG        TTCATGCGGCTTTTC  68 38
SM2011_a1001  555422 ..  555433 +  -3.6  -3.38786   CGGATCGCGTCGTTG                GTGC TTCC GCGC                 TTAATGTTGACTATC  49 146
SM2011_a1002  556172 ..  556201 +  -5.6  -3.86283   ACTGAAGTGCGCCTG       CCTCGGCGGATCG AGCAA CGTTCC-CCGTGG       TTTAATCTCGCTTAC  62 367
SM2011_a1005  557407 ..  557423 +  -4.4  -3.36803   GATGCTATGTCGACC             GCC-AGC AATC GCTCGGC              TTCTACGTAGCCTTG  51 124
SM2011_a1007  558308 ..  558351 +  -5.3  -3.31263   CCCATGCCCAACGAT CCCTCGGGCATT-CCGGG GACCGCAAG TCCGGCAATGTCCGGGCG TTCTGCGAGTAGCCT  50 411
SM2011_a1009  559018 ..  559041 + -18.2  -3.72027   GCGGCAGCCGCTAAA          CACGCGCCGT CGCA ACGGCGCGTG           TTATTGGTGAACAAT 100 47
        actP NONE
       hmrR1 NONE
SM2011_a1017 NONE
SM2011_a1018  565367 ..  565384 +  -7.7  -4.32034   GAAGCTCACTCGTGG             TGCACGCC CTT GGCG-GCA             TTTTCGTGCTGATCA  77 69
SM2011_a1033  569863 ..  569876 +  -2.3  -3.30771   CGAACATCTGAATAG               GACCG CACC CGTTC                TTCTCACGGGTCTAA  44 30
SM2011_a1036 NONE
SM2011_a1037 NONE
SM2011_a1038 NONE
SM2011_a1041 NONE
SM2011_a1043  573840 ..  573865 + -14.7  -3.44586   AAGTAGTGAAACGAA         GGGACGCGGTC GGCA GACGGCGTCCC          TTATCCTCGCTTCAT  87 35
SM2011_a1045 NONE
       cyaE2  575681 ..  575705 +  -3.5  -3.44051   TCCACGCCAACGCAT         CGGCGCTGCG CGACTA CGT-GTGCCG          TTATCCTGGTGCCGG  47 432
SM2011_a1058  579633 ..  579645 +  -3.4  -4.55295   AACCACTTGTTCGAC                GATC CCCTT GATC                TTTATTTATCACGAA  66 306
SM2011_a1067  584320 ..  584330 +  -2.4    -3.376   GACCGATCGGCGTTG                 GCAG GAA CAGC                 TCTTCTGTGGTTGCC  46 485
SM2011_a1070 NONE
SM2011_a1073  587289 ..  587307 +  -8.9  -3.54424   GGCAGTCTGGCAGGG             TGCCCAT ACATA ATGGGCA             TTTACCCGGATGGAC  66 368
       nex18  588730 ..  588753 +  -3.2  -2.80816   TGTCATCGACAAGGT          GATCATGCC GCCGGAA GGC-TGATC          TCTCATCCCTCGAAC  41 4
SM2011_a1078  589010 ..  589050 + -13.9  -4.11216   AGAACCGATAGGGAC  TATGGAGGGCCTCGCTTGC CTC GCCGGCGGGTCCCTCCATC  TTTTGCAGATGGACA  95 30
        tspO NONE
SM2011_a1081  590047 ..  590062 +  -2.4  -4.07877   TCATCGGAGGCATTA              GCAGCT TGTC GGCCGC               TTGTTTCTGCGCTCC  57 336
SM2011_a1087 NONE
SM2011_a1089 NONE
SM2011_a1091  597227 ..  597241 +  -4.9  -4.33675   GCCAATCAATGAGGC               TGCCG CAGCA CGGCG               TTTTAATGATCTCAT  68 287
SM2011_a1093  598449 ..  598471 +  -5.5  -3.28712   CTCAGTCCGCACATG           CGGCTCGAG AAGCA CTCCAGCTG           TTGTCCAACGCCAAG  51 190
SM2011_a1095  598800 ..  598820 +  -2.4  -2.74523   ACAGAAGACAAGGAA            CGCTTGCC ATTGA GGCCAGCA            TCATGTTGACGATAA  39 45
SM2011_a1096  599636 ..  599653 +  -9.1  -4.27584   GCATTCGCGGCGCAT             TCGGGTC CTCC GGCCCGA              TTTTGACTTACAGAT  81 377
SM2011_a1099  600224 ..  600243 +  -6.4  -2.64747   GACGGAGATGATGAC            TGCGCGGTG GAA CGCCG-GCA            ATTATGCTGCGGTGA  48 55
SM2011_a1100 NONE
SM2011_a1101  601479 ..  601505 +  -3.7   -4.3739   ACGCGTCGGATGCCG        CTGGCCGT-GTC GACT GACGATGGCAAG         TTTTGTCGGCGCATC  65 9
        cyaP  603620 ..  603632 +  -4.7  -3.89346   AAGCGGGAATGTCAT                GCGCC TAA GGCTC                TTTATGCGCTCCGCG  59 418
SM2011_a6256 NONE
SM2011_a1111 NONE
SM2011_a6257  605543 ..  605557 +  -3.4   -3.8646   CGCCGCAACCGGCTG               GTGACG GTC CGCCGC               TTTGCGTTGTTGCTA  55 74
SM2011_a6258  606106 ..  606129 +  -3.1  -3.48276   ACCTCCCGATGATGG          CGGCGGA TCTTCCAATC TCCGCTG           TTGTCTGCGCCCGAC  49 412
SM2011_a1115  607790 ..  607801 +  -7.2  -3.17319   CCCGGGGCCAGGCCT                CGCG GCCG CGCG                 TATTCATCGATTACG  56 257
       hspC2  608887 ..  608930 + -11.9  -2.79183   CACTTGATTGTCCCC GCCTTCCCGTCCGC-AATG CTTCGACC CGTTCGCGGACGGG-AGGC TCTGATGGCAATCGA  70 34
SM2011_a1120 NONE
SM2011_a1122 NONE
SM2011_a1124  613622 ..  613632 +  -2.4  -3.78775   AACCCTCAGACTGTC                 CCCC AGC GCGG                 TTTCCTCATAAACCC  52 225
SM2011_a1132 NONE
SM2011_a1134  619231 ..  619241 +  -3.2   -4.0162   CGGAATGAGGCTTAT                 TCCG GCG TGGA                 TTTCTCCTATACCGG  58 33
SM2011_a1136 NONE
SM2011_a1141 NONE
SM2011_a1142  623308 ..  623324 +    -3  -3.75678   GCTGCACGTAATAGT             TCCTTGC CCAA GCA-GGA              CTTTTTGTTTGAGCG  52 71
SM2011_a1146  626122 ..  626141 +  -4.3  -4.19238   ATCAATGTAGCCGCC            GCCACCTG GCGTA CAG-TGGC            TTTTAGAATTCCAAC  62 46
SM2011_a1147 NONE
SM2011_a1149  627994 ..  628022 + -16.1   -4.0648   TGCTCTGCCACCCAA        TAAAGGCGCCACT TAC AGCGGCGCCTTTA        TTATTTGCTCTCATT 100 45
SM2011_a1153 NONE
SM2011_a1154 NONE
SM2011_a1155  632591 ..  632608 +    -4  -3.57971   GATACGGCCCCGGCG             GCCCAG TTCCCT CAGGGC              TTTGCAACTCAGTCT  51 42
SM2011_a1163 NONE
SM2011_a1166 NONE
SM2011_a1168 NONE
SM2011_a1169 NONE
SM2011_a1170  642087 ..  642109 + -10.6  -3.88583   TTTGATCGATTGGAT           CGAGCCTGAA GCG TTCGGGCTTG           TTTGTCCAGCATTTG  76 63
        nosR NONE
        nosZ  649541 ..  649551 +  -8.2   -3.3382   CGCATGCTCGTGGAG                 GCGC AGG GCGC                 TTGATGTCTCGTCCG  61 11
        nosD NONE
        nosF NONE
        nosY NONE
        nosL NONE
        nosX  654325 ..  654341 +  -4.3  -3.06815   CTGCATCAGCGTCAG              CGGTTGG GGT CCACTCG              TATGTTGAAACCAGT  45 148
         hmp  656029 ..  656086 + -11.3  -2.71731   TCGGGTATCCTCGGT GCTCTA-CG-GACAAAGGCACCCCGCC TTCCAC GGCGGGGTGCCGTTGCCGCGCTTGACC TGATTGCCGAGTGCG  66 443
SM2011_a1231  675614 ..  675625 +  -2.2  -4.31433   GCTGCCCGTCTTGAT                GGTT AGAT AGCC                 TTTCTTCTCCCCGTG  62 16
       nnrS1  686051 ..  686073 +  -7.6  -4.07885   AAGAGCATCACGAAC           TCGCCCGC TTAGACC GCGGGCGC           TTTTCGAGCAGAATG  71 73
SM2011_a1253  686648 ..  686662 +  -6.4  -4.72007   CCATGGTGGAAAAGT               TGCATC GCC GATGCG               TTTGTTTTGCTAGGG  82 287
SM2011_a1262  691225 ..  691248 +  -3.7  -4.09864   GCCGACTTCTGCGTG          CTCCCGAGC TATCTC GCCCCGGAG           TTTTGCCAAGTCGAT  61 465
SM2011_a6293 NONE
        hemN  693522 ..  693549 + -19.2  -3.83026   AGCTGAGAACAGAAA        GGCCCGGCATGT ACGC GCATGCCGGGCC         TTTCATCTCGCGGCC 100 52
        nnrU  700870 ..  700919 +  -7.7  -2.68823   ATCAGCAATCCCGGG CGACGCCGTTCCTTTGGCGACGTG CCG CTCGACGCCAAGGTAGTGCCG-CG ATTGTCTAACCGGCC  53 322
SM2011_a1289 NONE
SM2011_a1291 NONE
SM2011_a1292 NONE
SM2011_a1294  706455 ..  706491 + -16.6  -2.78384   AGACCAAAAGTGAGA    CTACCGCCTGTCGACC GGATA GGTCGCGAGGCGGTAG    TCTCGTCGACACCGC  87 454
SM2011_a1299 NONE
SM2011_a1301  710650 ..  710704 +  -8.5  -3.35679   GCTGATGCCGTTGGG GAGCGTCTTCTCAAGGCTGCGTTGTG ATCA CGCG-CGCAGCCTTGAGTCTGCGATC TTATGGGTCAACACG  64 82
        rctA  721670 ..  721687 +  -6.9  -3.65046   CGCGGGCGAAGCCCG             TCGCTCC GTTA GGGGCGG              TTGTTCGCCTCGCCG  63 224
SM2011_a5030  730676 ..  730688 +  -6.3  -3.68351   CCGCCCGCATAGGAA                TTGGT TTG ACCAA                TTTAGATGATGCGCG  61 53
SM2011_a1337  732325 ..  732350 + -13.3  -3.68222   AACGCTAAGACACTA         CGGGAGGGGTGC CCG GC-TCCCTCCCG         TTCTTCAACTTGGCA  88 39
SM2011_a1339 NONE
SM2011_a1341 NONE
SM2011_a6305 NONE
SM2011_a1344 NONE
SM2011_a1345  737145 ..  737169 +  -4.2  -3.04144   TTCATGCGCGCAATT         CGCTCGCGGCT TAAA AGCC-CGGTCG          TCTTGGGCGTGAGCG  45 468
SM2011_a1354  742104 ..  742116 +  -6.9  -3.06796   CTCCGAATGGTCAAT                TCGGC CTG GCCGG                TTGAGTCGGGTCAGA  54 353
SM2011_a1358  745304 ..  745326 + -14.8  -2.88215   GGCTGGCCGCTTTGT           CGGCAGCGTC GCG GTCGCTGCCG           TGCTGTTTGATGATG  77 375
SM2011_a6315  750663 ..  750686 +  -6.6  -3.28712   CCTGAAGGCCGTCGG          TCGTCCGATC GGAG GGTCGGCCGG           TTGTCAAAACGCGAA  55 200
SM2011_a1387  765023 ..  765068 +   -16  -3.28712   GTCGTTCGGCGCATA GC-CGGCATCGACGGCGGCGC GGGAG GCGCCGACGGCGGCGCCGAGC TTGTCGGCAACCGGC  88 269
SM2011_a1403  771750 ..  771781 +   -21  -3.53811   TGCGCCCTCTCCGAT      CGTCTTTCTCGGGC TTTG GCCCGAGGAAGACG       TTTGAAGAGGGTGCC 100 58
SM2011_a1410  776827 ..  776841 +    -7  -3.27525   CTTCCGCTCAATCAT               TGCCGC GAC GCGGCC               TTCCATTTCCGCCGC  55 464
SM2011_a1428  787106 ..  787120 +  -7.1  -3.05384   CATAGAGACCATCAT               GCGCA TGGTT TGCGC               TTAGATCACGACGAC  54 7
SM2011_a1445  796916 ..  796937 +  -2.1  -2.77547   GTCACTGTGTGCCGA           TGCGTCCCC GGGC GAGCACGCG            TGGTTCCCATTTGAT  39 52
SM2011_a1454  802445 ..  802455 +  -2.4  -3.53012   ATTGCCGCGCCATCG                 CCGG ATG CAGG                 TTTGAAAGCCCAGCG  47 461
SM2011_a1480  814648 ..  814664 +  -6.5   -5.0065   AACAAACGAAAATTG              CGAGATC AAT GACCTCG              TTTTATTTGTCCATC  86 104
SM2011_a1483  817721 ..  817731 +  -2.4   -3.1243   CCGCGGCGTGATCGA                 GGGG GAT CGCC                 GTTTGATTTTGAATG  43 521
SM2011_a1493 NONE
SM2011_a1494  823836 ..  823860 +  -7.7  -3.27617   TTCCGGTTGACAGCA          CGGCCCGCAGC TCG GTTGCATGCCG          TTGCTCAATTTGTTC  59 31
SM2011_a1495  825358 ..  825396 +    -8  -2.71364   CCGAAGCGATCGCGG   CAGTTCTGCCGTAGGGCG TAC CGGCCCACGCAGGAACTG   TCATTGGCGCAATCG  54 12
SM2011_a1505 NONE
SM2011_a1507 NONE
SM2011_a1509 NONE
SM2011_a1513 NONE
SM2011_a1514  835672 ..  835688 +  -4.3  -3.72051   TCGGTGCCTTCCGCC              GTCAGCG TCA TGCGGAC              TTTCAACTTGTTGCC  56 126
       nuoH2  837124 ..  837134 +  -3.2  -4.09554   TTTGGCGAACATAAT                 CATC AGC GGTG                 TTGTATTTTCTTGAT  58 1
       nuoI2 NONE
SM2011_a1521  838447 ..  838470 +    -3  -4.07568   CCCCGCCGCATCAGA          CTGTTGAGCC GCAG GGCGCGGTAG           TTTTCGGGAACGAAC  58 204
         pcm  853762 ..  853775 +  -3.7  -3.13191   AGGCGCGCGTACCCT               GCCGC AGGA GAGGC                TGTATCTATTCTCCG  45 40
SM2011_a1548  857148 ..  857159 +  -3.6  -2.87564   GGAATTAGCCCTACA                CGTC TCGC GGCG                 TGTGTGGCACAATCC  44 69
SM2011_a1550 NONE
SM2011_a1552 NONE
SM2011_a1554 NONE
        mcpS NONE
SM2011_a1558  863897 ..  863911 +  -2.1  -3.29511   TCGTTTGAGGGACGA               GGATG GTACG CATTC               TTCTCGCGACATCGA  44 33
       cheB2  865108 ..  865127 +  -4.2  -4.38712   CGGCACGGTGAGCTT            GGGCGG AAGGGCAG CCGCTC             TTTTCTCGGCCTCGC  66 170
SM2011_a1579  874242 ..  874253 +  -2.2  -2.80816   AAGAGACGTCCAGCC                GTTG ACTT CGAC                 TGTCATCAATGCAGG  39 102
SM2011_a1580  874862 ..  874876 +  -5.6  -4.20531   AGTGAGGAGGCGTCC               GTCCGC CGA GCAGAC               TTTTGACTGAATCTA  66 97
        eglC  882013 ..  882033 +  -3.9  -4.20531   AAATCGCCAAACTTG            TTCCCTTAG GAA CTGCGGGGA            TTTTCAGTAACTGTC  62 354
SM2011_a6349  882455 ..  882466 +  -4.4  -3.64103   GCGACGAGCTTTCAA                TCCA GGCC TGGA                 TTTCCGATGTCAGTG  56 224
SM2011_a6350  883520 ..  883538 +  -2.2  -3.41229   CCTTCCCCGGACGGC             AATGGCCG CCT CGGCCGAC             TTCTGATCACCATCT  46 81
SM2011_a1594  889504 ..  889517 +  -3.1   -2.8372   CAACTACCATGGTGC               GGTGCG ACG CG-ACC               CTTTGATCACAGATC  41 72
SM2011_a1595  890161 ..  890171 +    -4  -2.63913   GGCCCAATGATTCAT                 CATA CTT TATG                 TACTCTGGCCTGGTA  42 42
SM2011_a6354  890903 ..  890947 +  -5.8  -3.08996   ACGGAAAAGGACTGG CAGAACGTGT-CG-GGCTGAAA GGC TTTCGGCCTCGGGCGTGTTCCG TGTTGGATCAGCCTC  49 474
SM2011_a1600  893418 ..  893454 +  -9.4  -2.73994   CGCATCGCACCGGCC   GCGG-GCCGACGTCGCCA AAA TGGAG-CATCGGCTCCGC   TGATATTGCAGCAAT  61 184
SM2011_a1604 NONE
SM2011_a1606  896939 ..  896951 +  -4.7  -2.62184   GAGAGTATGGGGTTC                GGGCG ATA CGCGC                TGCTGTCAGCACCAA  43 401
SM2011_a1617 NONE
SM2011_a1619 NONE
SM2011_a1620  902871 ..  902892 +  -5.7  -2.87132   TCCTCACGCACCAGC           GGGGCGCCA TGCA TGGCGGCCA            TGTCTACGGGAAGGA  48 311
SM2011_a1626 NONE
SM2011_a6360  905110 ..  905130 + -11.8  -2.91695   ACTTGTTCCCAAATC            GGCGGGTG GGAGG CGCCCGCC            TGATTTGCAGGTGCA  71 2
SM2011_a5038  906148 ..  906181 +  -5.9  -3.53091   CCTTGATGGCGAGCG     CCTTCGTCTTCGACG ACGG CGTCGGGCGCAAAGG      TTTCCGACAGCGCAT  55 188
SM2011_a1632  907255 ..  907275 +  -2.4  -3.54424   GACGCGCGGCTGAGT            GACTCGCT CACAA AGCGCGCC            TTTAGACCAATGGCC  47 24
SM2011_a6363  907679 ..  907709 +  -3.8  -3.96624   GTGACGCTCGAGATC       GTCAGCGCCTTGCG TGA CGAACGGCCGTGAC       TTTCTGCTCGACGTC  60 81
SM2011_a1639 NONE
SM2011_a1641 NONE
SM2011_a1643  914068 ..  914082 +  -9.2  -3.27022   AGGTGACACGCTACC               TGGCCG TGG CGGCCG               TTACTCTGAACTGGG  66 84
SM2011_a1644  914988 ..  915000 +  -3.3  -3.14881   GCCCGCCAGGACTGG                CCGCA GCG TGCTG                TTCGTGAAGGACTTC  43 187
SM2011_a5010  915550 ..  915571 + -15.9  -2.70932   CTCGCTCAAGAAAAT           GCCCGGTGT CTGG ACACCGGGC            TAGTTGGCGGGAAGA  86 233
SM2011_a1652 NONE
SM2011_a1653  922914 ..  922941 +  -5.4  -3.53091   AACGGTCGAACAGCC        TTGACGCTACGG CGTA CCGAAGCGCCCA         TTTGAAAGCGGCGCT  55 22
SM2011_a1654  924007 ..  924024 +  -7.7  -3.91196   CCTTTCGCTTCTGGG             CC-GCGGA ATT TCCGCTGG             TTTCGTATGTGTGCA  68 254
       arcD1  933442 ..  933452 +  -2.4  -3.90588   AGCGTCCGCACCTCA                 GCAG ACG CCGC                 TTTCATTGGCGAATC  53 406
       arcD2 NONE
       arcA2  936442 ..  936469 + -11.2  -2.78384   GCGGGAACACAACAA        GCACCGTC-GCCG GTG CGGCTGGCGGAGC        TCTCGTCGGGGCAGC  66 290
SM2011_a1672  937543 ..  937593 +  -6.7   -3.2963   ACGGTCTGTTCGCCC GCGGATCGATGCGTCGGCACCGTT GGAG ATTGTTGCCGACG-AGCGCGCCGC TTCTCGGAGCATAGT  55 333
SM2011_a1675  938328 ..  938351 +  -4.4  -2.59564   TTGACCCACATAGCC          GCGATGGCCG ACGA TGACCACCGC           ATTATCCGCTGGGCG  43 61
SM2011_a1684  949186 ..  949210 +  -4.3  -2.81464   CTCGCACGAAATGGG          TGAATGATTTG GAG CCGATCGTTCA          TATCGTAGATGATGA  43 19
SM2011_a1686 NONE
SM2011_a1688 NONE
SM2011_a6385  950580 ..  950591 +  -7.2  -4.25104   TTCGAGGTTCCCGTG                GCCG AAAG CGGC                 TTTTGATGGGCCGCA  71 54
SM2011_a1691  952486 ..  952501 +  -7.5  -4.52589   ACGCATTGGTCGCAT              GGCCG CTGGTA CGGCC               TTTTATATGACGACG  76 190
SM2011_a1696  955600 ..  955614 + -12.8  -3.54741   ATCGTCTGGGCGTAC               GCGCGC TTG GCGCGC               TTTCGAGAGGTGCTG  77 500
SM2011_a6392  957256 ..  957267 +  -3.6  -3.12351   AGGCTGAAACGCAGA                GGCC GAAG GGTC                 TTCCGTCTCAGCCGG  45 71
SM2011_a1700  957944 ..  957954 +  -6.8  -3.19157   GCCAGCGAATTCGCT                 TCGG CGC CCGA                 TTGGTCGGCTTCGTC  53 461
SM2011_a1705  960815 ..  960839 +  -7.8  -2.89683   CCCAGATAGCTGCGT          CCGGGGCATG AAGTC TGTGCTCCGG          TATGTCGCCTACCGT  56 286
SM2011_a6393 NONE
SM2011_a6395 NONE
SM2011_a1711  963253 ..  963265 +  -9.1  -3.18681   ACACGCGCTCTTCTG                GTCGG AAG CCGAC                TTGATCGCATTCAGC  63 399
SM2011_a1720  970123 ..  970138 +  -4.6  -2.71416   GCCCGCGGGTCGACT              CTCAGG ACAC CCGGAG               CTTGTGTCAATCCTG  44 233
SM2011_a1725  972235 ..  972247 +  -3.3  -3.83437   TCGGATTGCTGAAAC                CTCTC AGC GGGGG                TATTTTCATTGCTCG  55 151
SM2011_a1727  974004 ..  974031 +  -7.6  -3.09004   GACTGACAAAAAGGG        TAATCCGCCGAC AACC GCCGGCGGATCG         TGGTTTTACAAGTCA  57 174
SM2011_a1735  979756 ..  979769 +  -2.3  -4.07568   CGAAATCTTAAAATG               GCGAT CTGC AACGC                TTTTCAGCGCAAGAA  57 102
SM2011_a1737 NONE
SM2011_a1747  989900 ..  989946 +    -7   -4.7373   GATCGGCAAAGCCGA GCTGCGCGGCGATGCTGGCAAC TGG GAGGTCGCTTTCGCCGAGCAGC TTTTTCGTAAGCTCG  81 166
SM2011_a1750  992689 ..  992705 +  -2.2  -2.91924   CCAGCGGCAAAGACG              GCGGTT CTAAC GACTGC              GTTTATGGCGAATGG  40 84
SM2011_a1760 1000112 .. 1000122 +  -3.2  -2.84812   AAAGCTCGTTCCCAA                 CCTT TAC GAGG                 TCTGATCATGTCAAT  41 10
SM2011_a1761 1001839 .. 1001860 +  -4.3  -3.25729   GCTATGCGGAAGCGG           GTCCTACGG AGCG CCCAAGGAC            TTCCTCATCGTTCTG  47 418
SM2011_a1767 1003699 .. 1003743 +  -6.4  -2.52464   TGCATTTGATGTGCT GGCGGACCCACGCTACC AAATGCCGCCGA GG-AGCGATGGTCCGCC TGAATTCGGAGCGCC  48 181
SM2011_a1769 1004443 .. 1004481 +  -9.5  -3.04144   GACGAGCTTCATCGA  TCACC-CGCCGCAGCCTT GCGC AAAGCTGCGGCGCGGCGC   TCTTGAAAGTGCGCA  64 300
SM2011_a1776 1006702 .. 1006716 +  -7.8  -5.24129   GGACAGCGCCCAGCA               TCTCGG CTC CCGAGG               TTTTTTCTCAACAGC  93 232
SM2011_a6411 1006961 .. 1006979 +    -3  -3.15544   GCAATTCGCGGCGGA             CTTCCCCT TAG AGGGATAG             TTCGTGACCGTGACC  43 7
SM2011_a6412 1007316 .. 1007332 +  -3.6  -3.61715   TCGTTGACAAGACTG              CGGAGC GACCG GCTGCG              TTGTTCACCAGAATG  51 107
SM2011_a1782 1009331 .. 1009359 +  -7.3  -2.72661   ACGGATGCGCCCGGC        CGTCGAAAGCTCC GGT GGCGATCTCGACG        TCATTGCCCCTGATG  52 270
       cyaI4 1014590 .. 1014606 +  -2.2  -3.49186   GTGTTGTGGAACGAT              CGCC GGAGATCGA GGCG              TATGTTTTCTAGGTC  47 455
SM2011_a1793 1015916 .. 1015952 +  -9.4  -3.87869   GTCCCCCAACCTGTT    CAGAGTGCCCGCAC CCCTTCCTC GTGCGGGCACTCAC    TTTCTCCGCCCTTCA  75 240
SM2011_a1797 1017720 .. 1017744 +  -5.8  -4.19735   GGCCGAATTCCGGTC         TACAAACCGCC CTGC GGTGGTT-GTA          TTTACTTTTAAGCAG  66 493
        kup2 1019942 .. 1019974 +  -8.4  -2.77522   CACAAGTCGACCAAC      TGCAGCGCTCCT TTTCAATCC GGGAGCGCTGCC      CTTCTTGGCGCCTCT  58 198
SM2011_a6428 NONE
SM2011_a6429 NONE
SM2011_a1831 1037566 .. 1037586 +  -8.1  -3.37915   ATCGTCGAAGAAGCC            CCCGGCGGC GCC GAGGCCGGG            TGTTCGTTTATCGCG  60 303
SM2011_a1833 1039586 .. 1039596 +  -3.2  -4.34402   CCGGGGTGTCCAGCC                 TCAG AAA CTGG                 TTTTCGTGTGCGGCG  64 379
        argE NONE
SM2011_a1838 NONE
SM2011_a1840 1043422 .. 1043444 +    -4  -3.64703   CGCCAGTCGATGCAT           GCTGCTCGCG TTC CTCCAGTAGC           TTTGAGTGCAAGCCG  54 304
SM2011_a1844 NONE
SM2011_a1846 NONE
       gabD5 1047696 .. 1047723 + -14.9  -3.21416   ATCTCCAAGCAAGAA        GGGCGCGGCACC TTTCC GGT-CCGCGCCC        TTCCTCATAAGCCTG  87 240
SM2011_a1853 1050859 .. 1050871 +  -3.3  -3.25823   ACCAGGCGCTCGGCT                GATCC GGA GGTTC                TTGATGTACAGCAAC  45 24
SM2011_a1855 NONE
SM2011_a1857 NONE
SM2011_a1860 1054895 .. 1054934 +  -7.7  -3.90291   CCTGATTGAGCAACT  GGGCTGGGGG-GCTGCAA CCGCA TCGCTGCGCCCCCGGCAC  TTTGGTTCGAAACCT  68 36
SM2011_a1862 NONE
SM2011_a1863 NONE
SM2011_a1864 1058477 .. 1058491 +  -6.4  -3.32844   CGCGGAAACGGGAAA               GGGTGT GAT ACACTC               TTCTGCCCTGCCGGG  56 61
SM2011_a1869 NONE
SM2011_a1871 NONE
SM2011_a1872 1062928 .. 1062941 +  -5.2  -3.12327   GATGTTAGGCGCAGT               GCGC GACCTG GCGC                TGTTCAATCTCGCGA  49 162
SM2011_a1874 1063487 .. 1063514 +  -9.9  -3.06133   AAGGCCAACGTTCGA        CCCTGAGGAGA CCTTGC TCTCCTCAAGG         TTAAATGACCGCTTC  64 90
SM2011_a1881 1067581 .. 1067596 +  -6.8   -2.7264   GCATCCGGCTGGTCA              G-CGGGC ATA GCCCGAC              CTTTCGAGAGCCTTT  51 116
SM2011_a1887 1073256 .. 1073270 +  -7.8  -2.71364   CGCCGACCAGGGGCT               GCTCCG GGC TGGAGC               TCGTTGCGAAACTGG  54 81
SM2011_a1890 NONE
SM2011_a1891 NONE
SM2011_a1893 NONE
       msrB2 NONE
       msrA3 1076155 .. 1076180 +    -6  -4.08767   GTCCTACCCCGGCGG         TCCGCGGCCG AGTAAA CGGCCGGAGA          TTTTCGCGACCTAAA  66 11
SM2011_a1898 1077686 .. 1077708 +  -2.6  -4.74504   GACAACGATGCAAAG           GCCCAAACGG CTC CTCTTTGGGA           TTTTTGCGTTCCGCT  70 110
SM2011_a1900 NONE
SM2011_a1902 NONE
SM2011_a1903 1080269 .. 1080283 +  -5.7  -2.94144   CAGCGCTAACTTGAG               GCGAA TACAT TTCGC               TCGTTTGAGTGAAGG  48 155
        mrcB 1083765 .. 1083779 +  -2.8  -4.15222   TGATGTGGGCTTTTC               GGACTA TTG TAGTCG               TTTCTTCGGAACACT  60 300
SM2011_a1910 1086007 .. 1086024 +  -4.7  -3.28712   ATAGCGATCTCTTGG             GTCACCG GTGC CGGCGGC              TTGTAGCACCGGCGG  49 154
        nhaA 1087616 .. 1087627 +  -7.2  -3.14211   AGACGATAGTGAAGG                CGCC CATC GGCG                 TTCCTAGCGACGCAT  54 32
SM2011_a1918 NONE
SM2011_a1919 1091598 .. 1091626 +  -4.4  -3.81488   CCCGTCTGACGAAAG        CACGCACGTTTC TCGCT GGAGCGCGCGCG        TTCTGTTTAGGAAGA  59 494
SM2011_a1927 1095738 .. 1095757 +  -3.5  -3.27298   CTTCGCGCCCTCATT            CCGGC CGTTTGGCAA GCCGG             TTCGTCGTTCCGAAA  45 405
       wrbA3 1098543 .. 1098555 +  -4.8  -3.49618   GCAGTCACCTTCAGC                CGGA GCTGG TCCG                TTGATTGTCTCCCAA  53 9
SM2011_a1937 1099868 .. 1099882 +  -5.6  -2.82933   AGCAAAGAATAAGAA               TGCGAC GGC GACGCA               TCTCCTCCGTTCCCC  47 99
SM2011_a1945 1103749 .. 1103759 +  -6.8  -3.03441   TAGGCACCGATCAGC                 CTCG CTG CGAG                 TATTGCAGCCTCCTC  51 395
SM2011_a1948 1104996 .. 1105023 +  -2.6  -3.42257   CCTTCATGAGCGTGG        CGGAGTCTCCGTC TGG GAATGGG-CTCCG        TTGCTGTCTTTCACG  46 151
SM2011_a1954 1109395 .. 1109414 +  -4.2  -4.12043   TTGATTGAGGAAGGC            GCCTGGTCG AGG CGAGC-GGC            TTGTTTAGTTGATTG  62 238
SM2011_a1957 1111820 .. 1111834 +  -5.6   -3.8377   TAGTCGTGGTCAGAC               GCCGCA GAA TGCAGC               TTTGCTCTAACACTT  61 298
SM2011_a1960 1113755 .. 1113791 + -12.9  -2.62184   GATTACCGCCTGAAT    GTCTGCCCGCCGATCCC ACT GTGATCGGTGCGCAGCC    TGATGTGGCGGCGCG  67 142
SM2011_a1963 1116366 .. 1116389 +  -8.1  -5.28176   GCGAAAATCTTTGCT          GGGC-TGGCG AGCAA CGCCGCGCCC          TTTTTTGTCGCTCCG 100 497
SM2011_a1967 1118213 .. 1118224 +  -2.2  -3.60627   CGATTGGGAAGGCAC                TGCT CTGA GGCA                 TTTCGCGTCGGGTGA  47 18
SM2011_a1968 1119142 .. 1119153 +  -3.6   -3.5764   GATCATCAGCCATCC                CTGC CCGT GCGG                 TTTGGGAATGGCCTT  51 60
SM2011_a1969 1120059 .. 1120077 +    -3  -2.70932   ACGCCGCTCCCGGAA             CGGTGACG ATG CTTCACCA             TCATTCACACCGCCA  41 61
SM2011_a1971 NONE
SM2011_a1973 NONE
SM2011_a1974 1121949 .. 1121962 +  -4.5  -4.72272   TATTCGGCGCGCAAA               CCATG ACAC CGTGG                TTTTTCATAAAGAGA  75 436
SM2011_a1979 1124498 .. 1124555 +  -8.5  -2.57795   AGATTGGGTGGCATT ATGGCTG-CGAGCGGATG--CGGCCG AAGCCCGGC CGGCCGATCATCCGCCCGTCGGCCAG TGCCTTCCTGATGAA  57 319
SM2011_a1987 1127098 .. 1127118 +  -4.7  -3.16328   ATGCTGTTGAGTTTG            TGCTTGC ATAATCA GCAAGCG            TCTCTATATTTGCTA  47 329
SM2011_a1990 1127785 .. 1127797 +  -4.8  -2.56046   TCACCGTACCGCCCA                TCGG CGTGT CCGA                TGAATTGGCGTTTCC  43 67
SM2011_a2002 NONE
SM2011_a2004 1135803 .. 1135815 +  -6.3  -3.03771   GTCCACCTGGTCGAG                TTGCA CAA TGCAA                TATTCAACGATATCG  52 409
SM2011_a2009 NONE
SM2011_a2011 1137498 .. 1137517 +  -4.2  -3.81626   CTTTCAGATGCTTTC            GCC-GCAGA ATG TCGGCCGGC            TTGTTCGATTTCTTG  56 207
SM2011_a6468 1141154 .. 1141168 +  -4.3   -2.5586   AATCGCCAGACTGGA               GATCA AGTGA TGATC               GATTTTCTCAATCTT  42 16
SM2011_a6469 1141431 .. 1141442 +  -3.6  -3.55071   GGAGGCTCTTCAGCA                GCCG GGGG TGGC                 TTTGCGGCGCTATCC  51 90
SM2011_a2019 1141946 .. 1141965 +  -5.7  -2.87132   CCCACGGCGTAGGCG            CCC-CCTG CAGAT CAGGCGGG            TGTGTCCCACCCGCC  48 29
SM2011_a2023 1143359 .. 1143415 + -10.2  -3.01712   CGGCGAAAAAGCAAT GATCGACTTC-GCGTCATCGGGAAGGT CGAG ACCCTCCCGATGACGCTGAAACAAATC TGTTAAACAGACCGC  64 24
SM2011_a2025 1145196 .. 1145224 + -14.5  -3.29511   CTCGTTTGTGAGGAG        CTTGGCGTCCTGC TGC GCGGGTCGCCGAG        TTCTCCGCAACTGCG  86 42
SM2011_a2029 NONE
SM2011_a2031 NONE
SM2011_a2032 1148107 .. 1148118 +  -5.8  -4.41616   CTACGGTCCAAATCG                GCCA TGGC TGGC                 TTTATTTCGCACAAT  72 411
SM2011_a2033 1149507 .. 1149517 +  -2.4  -4.71426   TCGCTGTGGAACGAT                 CGTG CGT CCCG                 TTTTGTTGATGAGCA  66 481
SM2011_a2043 NONE
SM2011_a2045 1155516 .. 1155535 +  -2.2  -4.07568   ACCCGCATCGGTTCC            GGTCG-ATA CAT TATGCGATC            TTTTCAGCCCAGAAG  56 117
SM2011_a2047 NONE
SM2011_a2049 1157934 .. 1157944 +  -2.4    -3.889   CTTCATCACCATCAC                 GCCC GAA GGCC                 TTTGATCTAATTAGA  53 10
SM2011_a2051 NONE
SM2011_a2053 NONE
SM2011_a2055 1160174 .. 1160206 +  -8.4  -2.77522   CACAAGTCGACCAAC      TGCAGCGCTCCT TTTCAATCC GGGAGCGCTGCC      CTTCTTGGCGCCTCT  58 402
SM2011_a2061 NONE
SM2011_a2063 NONE
SM2011_a2065 1164026 .. 1164041 +    -4  -3.58533   ACTAGGCGCGACCTG              GACGGTC TTC GAC-GTC              TTTAGCGGGTTGTCG  51 221
SM2011_a2087 NONE
SM2011_a2089 NONE
SM2011_a2091 NONE
SM2011_a2093 NONE
SM2011_a2095 NONE
SM2011_a2097 NONE
SM2011_a2099 1182799 .. 1182812 +  -5.2  -3.06815   ACAATTCATCCGCCG               CCGC TTCACC GCGG                TCTATTGAAGGACCT  49 4
SM2011_a2101 1184617 .. 1184635 +  -3.7  -3.53444   CATCAGCCTCACCTG             CGCGCGC TCATC GTGCCCG             TTTCGCACCCAATGG  51 505
SM2011_a2105 1187535 .. 1187551 +    -8  -2.62184   GATTTCTACCTGCCC              GGCATC CACAA GATGCC              TGATCTGCCACAGAG  51 298
SM2011_a2109 1189531 .. 1189564 +  -4.6  -3.76125   TCGTGCGTCGGCTCG     TGGCAATAATCGTGG AGCAG CCACG-TTAAAGCCA     TTTACCTTCGGCTCA  56 263
SM2011_a2111 1191657 .. 1191685 +  -6.6  -3.16881   GTTCGCCTGAGCACA        GGCGTCGCCCTT CCCGA AAGCCCGGCGCC        TTCCTACAATGACTA  52 31
SM2011_a6501 NONE
SM2011_a6502 NONE
SM2011_a2151 1214436 .. 1214475 + -11.3  -3.06796   CACGGGACTCCGCTC  CGTTCCCCGAGGTGGCC ATAAAA GGCCGCCTGAGGGGGCG   TTCGATAGCGTACAA  69 499
SM2011_a2157 NONE
SM2011_a2159 1216889 .. 1216935 +  -8.8  -2.62983   CTAACCAGCCATACG CTCGGC-ATCCTGCCCGCTGGA TACAT TATAGCGGG-AGGCTAGCCGAG TGGTGTACCAATGCA  57 115
SM2011_a2163 1217896 .. 1217907 +  -5.8  -3.21276   GCGATATCACAGTAG                TCGC GTCG GCGA                 TGTTCTCGAAAACCA  51 94
SM2011_a2165 1219110 .. 1219141 + -13.1    -4.128   CCGATCTAGTTCAGA      GACCCCGATGC ACCTCCTCCC GCATCGGGGTC       TTTCTATATCAGGAT  93 442
SM2011_a2167 1220451 .. 1220472 +  -5.8  -3.53444   ACCACCATACTGATC           GCAACGGC CCAACA GCCATTGC            TTAGTTATTCAAAAA  55 191
SM2011_a2215 NONE
SM2011_a2217 NONE
SM2011_a2219 NONE
SM2011_a2221 NONE
SM2011_a2223 NONE
SM2011_a6522 NONE
SM2011_a2225 1245496 .. 1245508 +  -6.9   -2.8805   GCCGGTCCGCGCGTG                GTCGC GAT GCGGC                TCTGTCGCGCCTCGT  50 163
SM2011_a2231 1248466 .. 1248481 +  -3.2  -4.51765   TACCAGCAGCAACAT              TCGCCT TGAG AGCCGA               TTTGTTTCAGTTGTC  66 455
SM2011_a2235 1251641 .. 1251651 +  -2.4   -4.4078   TAATCAGACTCTTTC                 GGGG AAA CACC                 TTTTCATTGACAAAC  65 509
SM2011_a2239 NONE
SM2011_a2241 1254787 .. 1254797 +  -4.6  -3.04144   CAAGTAATAAAGCGG                 TGCG CCC CGCG                 TATTGCGGATGAGCC  47 154
SM2011_a2249 1260089 .. 1260114 + -14.1  -2.90813   GGGCGCCATCCGCCA         TCACGG-CCTGC TCG GCAGGACCGTGA         TCGTTTCGGACGATG  82 0
SM2011_a2251 1260795 .. 1260805 +  -4.6  -3.54424   CGCCGTGCACCGTCA                 CCGT TTT GCGG                 TTTCGGCGGATGACG  55 146
SM2011_a6537 NONE
SM2011_a2253 NONE
SM2011_a2255 NONE
SM2011_a2257 1263687 .. 1263700 +  -3.7  -3.29144   AGCGTTGCAGTTCGG               CGGCG TGCT CGGCG                TTCTGGCGGGGATCG  48 208
SM2011_a2263 NONE
SM2011_a2265 1265639 .. 1265653 +  -5.6  -2.85999   GGGTGCGGAGCCTCT               CCAGCG TCT CGCTGA               TGTCGTCTACGGTGA  48 226
SM2011_a2269 1266869 .. 1266890 +  -9.5  -3.17622   GCGCCGTAGAAAATT           GCCGCGACAA TGA TTGT-GCGGC           TATGTTCTGCCCGTA  61 395
SM2011_a6545 NONE
SM2011_a2285 1270295 .. 1270310 +  -5.4  -3.14931   CGCGAGGCTGCGAAG              CT-GGCC GTG GGCCGAG              TTGATGGACCGTGCC  49 177
SM2011_a2289 NONE
SM2011_a2291 NONE
       mrcA2 1276481 .. 1276492 +  -3.6  -3.27298   GGAATGTTCCGCAGG                GCGC AGGC GTGC                 TTCCTCATTACAAGC  47 195
SM2011_a2295 1277905 .. 1277915 +  -3.2  -4.08767   GCCCTTACTGTTTGG                 TGTG ACG CGCA                 TTTTACCGACGTCCC  58 110
SM2011_a2297 1279171 .. 1279216 +  -3.1  -3.01162   CTCGACGCCTTCAGG CGGGC-GGTGTGCGAGCAAGGC GCG GTCACGCTCGCGGATCAGTTCG GTTATTTGCTGCTCG  43 159
SM2011_a2305 1284454 .. 1284478 +  -2.8  -3.91084   CCTCAATAGCATCAA         GG-CTGGG-CTG CTA CGGTCCCGGTCC         TTTCATTCCCCATGA  55 47
SM2011_a2307 NONE
SM2011_a2309 NONE
SM2011_a2311 NONE
SM2011_a2313 1289468 .. 1289479 +  -3.6  -3.14211   TGGTGACCCGGGCGA                GTCG AGCG CGGC                 TTGATCCAAACGAAT  45 10
SM2011_a2315 NONE
SM2011_a2317 NONE
       gst14 1291515 .. 1291535 +    -4  -3.54459   GAAATGTTTATCGTG            CCCATG CGACAAGAC CATGGG            TTTGGCAGGAATTGG  51 394
       uvrD2 1293861 .. 1293873 +  -4.1  -3.54307   CGCGCTGACTCCCCG                GGATG CAT TATCC                TTTACACCCGCTATT  51 133
SM2011_a2323 1294980 .. 1294993 +  -8.1   -3.5944   AGCGCCGCGCCGTCG               CGCGT CACG ACGCG                TTTGACCATGTCGAT  65 502
        rhtX NONE
        rhbA NONE
        rhbB NONE
        rhbC NONE
        rhbD NONE
        rhbE NONE
        rhbF 1312926 .. 1312951 +    -6  -5.25803   CTGCAACGGAAGATC         GGCGGCTCCC TGAACC GGGAGCGCCC          TTTTTTCTGCCAGTT  90 56
        rhtA NONE
SM2011_a2339 NONE
SM2011_a2343 1319385 .. 1319409 +  -2.9  -2.77344   TTTTCCGCGTCCGAC          GAAAGGAATAT TCC ATGATCTTTTC          CTTATTGCCAGATCG  41 66
SM2011_a5012 NONE
SM2011_a5013 1320704 .. 1320723 +  -4.8  -2.88861   ACAGCCGCGTCGAAC            GGCCCCTC CGGT GCGGCGCC             TATGTAGCCCTGCTG  46 393
SM2011_a2349 NONE
SM2011_a2351 NONE
SM2011_a2353 1325253 .. 1325277 +  -2.1  -3.54935   TCCTCGGCAACCCAA          TTGGAGTGG CGGTCAT CCACATCAA          TTTCGAGCAACTTTA  47 83
       dinB2 1326520 .. 1326547 +   -12  -4.07568   ACCAGAAACGAAAAA        GCCTGCCGCG GGAGGAGG TGCGGCAGGC         TTTTCCAAAAGAACC  86 57
        cyaO 1329090 .. 1329103 +  -6.7  -3.09933   ATCCGACGAGCCGCA               GGAGA GTTT TCTCC                TTCAGTGCCTTGACC  51 108
SM2011_a2361 NONE
SM2011_a2363 NONE
SM2011_a2365 NONE
SM2011_a2367 NONE
SM2011_a2369 NONE
        codA NONE
SM2011_a5034 1338135 .. 1338154 +  -3.6  -4.83169   GGGATGCATTTAGGC            GGAATC GGAAAGGG GATTCC             TTTTTCTGCGCAAAT  75 51
SM2011_a2373 NONE
SM2011_a2375 1339227 .. 1339255 +  -3.1  -3.39449   GCGCGTCTGATAAGA       CGCGCGGCGCTGT AGAGC GCGG-GCCGC-CG       TTGCTGTTCGTCGAG  47 97
SM2011_a2377 1340575 .. 1340607 + -14.9  -4.11216   GACCATCCAGGGGAA      GGCCAGGACATGG GCTCGAG CCACGTCCTGGCC      TTTTACCGATCAGAC 100 74
SM2011_a2381 1343809 .. 1343825 +  -5.1   -4.4009   CGCAGTCACCTAGCA              GGCCAAA ACC TTTGCCC              TTTTCTGGAATGAAC  67 28
SM2011_a2383 1344869 .. 1344892 +    -3  -3.62096   GAGCGCCAACCGACA          CGGGCATGAC CGCA GCCATGGTCG           TTTAACGTGGTGGAA  49 66
SM2011_a2387 1347408 .. 1347433 +    -9  -3.18681   CGCTGGGCGTGTGAA         GGATCCGCTG GTCTCG CAGCCGATCC          TTCATCGAATTGGCG  63 27
       repA2 NONE
       repB2 1349646 .. 1349664 -    -3  -2.91593   GATCTTGCTACAAAT             CTGAGGAA GGC TTCCACGG             CTTGTTCGTTGGGGG  42 58
       repC2 1348189 .. 1348202 -  -3.1  -3.21099   GGCGCTGATTACGAA               GTGCGG CGA CCG-AC               GAATTTGGAGCACGC  45 159
SM2011_a2389 1347478 .. 1347504 -   -10  -2.80307   TAAAGTGGCAGCACA         GACGCTGCCAGG AGC CCGGCCAGCGCC         GAGGGTTCCGGGGAA  63 136
SM2011_a2385 1344750 .. 1344795 -  -5.9  -2.64472   GATCGGCGAAACCTA TCGCCTTGCCGACGCCGC-CGG CGC CCATGCCGCGATGGCAAGCCGT GCAACCACCGGAAAA  46 280
        katB 1340530 .. 1340552 -  -6.2  -3.62775   AGCACCGCGTAAGAA           GCTGCAGCCT GTT AGACTGCCAC           TATCAACGACCATCC  58 90
SM2011_a2359 1329012 .. 1329032 -  -5.3  -3.89524   ATGCCATCTGAGAAA            CCGGTGTTC AGA GAAACCCGG            TAAGTTCGAGCGTCT  61 12
SM2011_a2347 1319927 .. 1319937 -  -8.2  -2.70932   CCGCGTTCCCAATGA                 CCGC TGG GCGG                 GGCCAGAACCGAAAT  54 446
SM2011_a2341 1317261 .. 1317289 - -10.3  -3.14931   CGGATCGTGCAGGAA       CCGAGCGCGGCG CACCAC CGCCA-GCTCGG        CAATCTGCAGCGCTC  64 371
        rhrA 1312878 .. 1312892 -  -9.2  -2.57132   GTCGCCTTCGACAAG               CGCAGC AAC GCCGCG               TAACCGGCTTCAAGG  60 102
SM2011_a2335 1302509 .. 1302530 -    -3  -4.74801   CAATTCCAGGAAAAA          CGCGCAGCGG TTTT CCG-TGCG-G           AGTTGCGGCAAAATG  73 181
        kdpA NONE
        kdpB NONE
        kdpC NONE
SM2011_a2327 NONE
SM2011_a2325 1294541 .. 1294551 -  -4.6   -3.2614   GAGGCTGCACATGAA                 CGCC TCA GACG                 TCCCGTAGATCTGTT  49 201
SM2011_a2303 1281690 .. 1281710 -  -4.6  -3.63805   ATTTCATATGGCAAA            TCGTGGCA GTGGT CGCCGCGA            GCATTGGAAGACGTG  56 75
SM2011_a2301 1280232 .. 1280271 -    -4  -4.30719   CCCGGCGACAACAAA  GGCCCA-GCGCCCTGTGCG TTG CGCGCCGCGCGCCTCGTCC  CGGCACCTGCATACC  65 84
SM2011_a6550 NONE
SM2011_a2299 1279061 .. 1279079 -    -8  -2.72511   GGGAGCGGTTGAAAT             GCCGCCAC CGC GCGTCGGC             CGCAAGGGGTCGGGT  54 45
SM2011_a2293 1272860 .. 1272872 -  -4.7  -2.73875   CGCCCTTTAATATGA                GGGCG CGG CGACC                AGCTTGAAGGCAGAG  44 83
SM2011_a2287 1270101 .. 1270111 -  -6.8   -3.8512   GACCTATTACAACAA                 TGCG GAA CGCA                 AGCAAGGACGAGCGG  66 189
SM2011_a2281 NONE
SM2011_a2279 1268145 .. 1268159 -  -5.6  -4.29391   AACGATAAAAGCAAA               GCCTGC CAC GCAGGT               GGCGAACAAAGACGA  69 114
SM2011_a6544 1267506 .. 1267522 -  -6.5  -3.53343   AACCTGGTCCTGAAA              GCCCGCT GCA AACAGGC              GGCCTCGATCCGGCG  58 217
SM2011_a2275 NONE
SM2011_a2273 1266406 .. 1266416 -  -2.4  -3.78004   CGATGACAAGAAAGA                 CGTC GTG GTCG                 TTGATTATGTCGCAA  52 417
SM2011_a2267 1265137 .. 1265166 -  -6.3  -3.94634   GATCATCGCAAAGAA       GGTTTACACCGCG GCGC CGCGATGCAGCCC        CGCGACATGTTCGAC  65 373
SM2011_a2259 1263384 .. 1263417 - -12.5  -3.55761   GACCGAGGCTGCAAA     CCGCGGCATC-CCTCT TCC AGAGGCGATGCAGCAG     TCGCTGCACAAATCG  77 119
SM2011_a6536 1260409 .. 1260427 -  -7.4  -2.51133   GACGCAGGGATGAAC             TGCTCAAG GTT CTGGAGCA             CCCGTTTATTCCACT  50 274
SM2011_a6535 1258462 .. 1258476 -  -4.2  -2.71731   CCCATCGGGCAAGCA               CCGC ATCGATG GCGG               CCAATGTCGGTTACT  43 117
SM2011_a2245 1255612 .. 1255651 -  -8.4  -2.58253   ATACAACGGAACGCA  TGTTCTTCGCGCCGACGA AACT CCGTCGGCGCGAACGGCG   ATCTAAGGATTACGC  57 55
SM2011_a2243 1254591 .. 1254603 -  -6.3  -3.21695   GCACCATCAAGGTAA                CTGAT ACT ATCAG                TCTGAACCCGCAACG  53 98
SM2011_a2237 1250973 .. 1250991 -    -3  -4.11216   TTGCGACGTTCAAAA             CGGCGACC GAG GATCGCTA             CGCAGGTTGGGGAGC  61 481
SM2011_a2233 1247994 .. 1248021 - -16.3  -4.08767   GGCAGCGGCCGAAAA        GGCGGGGGCGT CGCTGC ACACCCCCGCC         CATACGCGGAACTGA 100 492
SM2011_a2229 NONE
SM2011_a2227 1245335 .. 1245359 -  -5.6  -3.29263   ATATCCCTCGGAGAA          GTCGCGGATC TTGTG GAACCGTGAC          GGACGGAAGGACAGC  51 116
SM2011_a2213 NONE
SM2011_a2211 1235604 .. 1235620 -  -3.6  -2.79117   TGACAAATGAAAGAC              TGGCAG AACCG CTGCCT              CGGCATGTGTCCGGT  43 98
SM2011_a2209 1234492 .. 1234517 -  -9.7  -2.71712   GCGCCTTGCCGAAAG         GCC-CGGCTCAC AAG GTTAGCCGTGGC         GCTCGATCGTGCGTG  61 57
SM2011_a2207 NONE
SM2011_a2205 NONE
SM2011_a2203 1231676 .. 1231689 -  -2.3   -3.9243   GAAGGCTCGAAATAA               GGCTG ACGC CAGGC                CTGTTCCTTGTCAGG  53 36
SM2011_a2201 NONE
SM2011_a2199 1230183 .. 1230202 -  -2.7  -3.14132   GCTGTCTCTCAGGAA            TGGCCAC TTTGCT GCGGCCG             GTGAGAGGGCACCGG  41 50
SM2011_a2197 NONE
SM2011_a2195 NONE
SM2011_a2193 1227120 .. 1227153 - -14.7  -3.07443   CCATACCTCACCTAA     GACACGTCGCTAACG ACGT CGTTAATGACGTGTC      TTAGGTCATCAAGGC  83 77
SM2011_a2189 NONE
SM2011_a2187 NONE
SM2011_a2175 1223302 .. 1223315 -  -2.3  -3.54475   TGGTGCACCACATAA               GCGCA ACTA TGCGG                CGACAATAATTATGC  47 109
SM2011_a6510 1222994 .. 1223007 -  -5.9  -3.79162   GTGAGATAAAATCAA               CCGAC ACGC GCCGG                CGGAGCGCCCCAGTT  61 8
SM2011_a2171 NONE
SM2011_a6509 1220982 .. 1221001 -  -6.4  -3.32516   ACAAAGCAAGGAAGA            GCCGCTTA ATGG TAACCGGC             CGATTGTTACCGCGG  54 32
SM2011_a2169 1220078 .. 1220100 -  -9.8  -4.14739   TGAGCTAGCGGAAAA           GACAGGACGG GCT CCGTCCAATC           TATCACGCACTCTAC  81 398
SM2011_a2145 1210278 .. 1210320 -    -2  -2.61695   CGGATTTTCAAACAG GCAGATCCCGTTGGCCGCAGC GAGG GCAGCGACC-ATG-G-TCTGC GGAGCATCATGGCGG  38 74
        metF 1209343 .. 1209372 -  -6.4  -3.46659   CAGAGTGAGAACGAA       GGGCTGCGCAACG TTGGT CATCGCAC-GCCC       GCCTGCAACTGCCGG  56 13
       purU3 1208478 .. 1208489 -  -2.2  -2.93853   GCTTCTCAATCAAAT                TGCA AGGC CGCA                 CACGGCTGTCGCCTT  40 39
        sgaA NONE
SM2011_a2137 1206241 .. 1206253 -  -6.2  -2.84687   TGAAGGATCAGCAGA                CCGC ATCAG GCGG                CGAACGGCCGCTGAA  49 5
       glyA2 1204767 .. 1204778 -  -3.6  -4.09739   CGAAGCCTTTCAAAA                CACC CGGC GGCG                 GTGTTCGCCAAACGT  60 140
SM2011_a2133 1203939 .. 1203953 -  -3.5  -2.52464   GGCTGGGCGAACCCA               GGCAA TGAAC TCGCC               GGAGGCTCAGCCGTT  39 32
SM2011_a2131 NONE
SM2011_a2129 NONE
SM2011_a2127 NONE
SM2011_a2125 1198996 .. 1199009 -  -2.3  -4.56597   GCGGTCCCTGAAAAA               GCTCA AGCA TGCGC                TTCACTCCTGACGGT  66 14
SM2011_a2123 1197796 .. 1197811 -  -3.3  -3.35371   CATACCTTCAATTAA              CGTTT GGGACA AAACG               CAAAGTCGAAGGCCG  47 287
SM2011_a2121 NONE
SM2011_a2119 NONE
SM2011_a2117 NONE
       gst13 NONE
       adhC2 1191714 .. 1191726 -  -6.2  -3.61244   TACCTCAGAAATGAA                GGCG AGGAG CGCC                TTGGAATCGATTATC  58 515
SM2011_a6489 1189540 .. 1189556 -  -3.6  -3.61398   GGCTCGTGGCAATAA              TCGTGG AGCAG CCACGT              TAAAGCCATTTACCT  51 78
SM2011_a2107 1187308 .. 1187330 -  -9.8  -2.64616   TTTCGATGGAGAGGA           CGAGCGCG ATAACGA CGCGCCCG           AAAATCTGGCTCATC  60 86
SM2011_a2103 1183744 .. 1183783 -  -6.4  -3.64915   GTTCATAAAGGAGAA  CGGCATCG-ATCCGGATGG TTT CAATCCGGATGCAGTGCTG  GACGCCGAACGCTTC  59 505
SM2011_a2085 NONE
SM2011_a2083 1174426 .. 1174443 -  -3.4  -2.72344   CGCCATCGTCAACGA             TCCTGCG TAAAG CGC-GGA             TTGAGAGCGTCGTTC  41 1
SM2011_a2081 NONE
SM2011_a2079 NONE
SM2011_a2077 1171340 .. 1171374 -   -23  -4.41241   TAAAGGCCGACAAAA     CACAGAGCCCCGGATC AGT GATCCGGGGCTCTTTG     CAACTCGGCTGCCAT 100 71
SM2011_a2075 1169045 .. 1169072 -  -6.2  -3.19236   ATGAAGAAAAGGAGA        GTGCACTCGGTCG ACC CG-CCGGCTGCAC        TGGCGCCTCCGACGA  54 55
SM2011_a2073 1167574 .. 1167598 -  -2.1   -3.6682   GGTTAGGCAGCGAAA         GCCAGATGGC GCTTGT GCC-TCTGGG          AGGAGGCGCGGCAGA  51 218
SM2011_a2071 1166865 .. 1166878 -  -6.7  -3.02144   GCAGGCGCGGGAACA               GGTTG GCAC CAACC                GCAGCTTCACTGCTT  52 40
       cysP1 1165296 .. 1165306 -  -8.2  -3.43919   CGCAAAGGCCAAATA                 CGGC GCC GCCG                 AGCGCTGACTATCGT  61 34
       cysA1 1164094 .. 1164104 -  -6.8  -2.78547   GGATGCTAGGAACTA                 TCCG CAT CGGA                 GGCGAACGAGGTGCT  51 111
SM2011_a2059 1160174 .. 1160206 -  -7.7  -2.51471   CACAAGTCGACCAAC      TGCAGCGCTCC TTTTCAATCCG GGAGCGCTGCC      CTTCTTGGCGCCTCT  53 56
SM2011_a2057 1159422 .. 1159451 -  -4.9  -4.21936   GTGAGAACCTGAAAA       CCTATCCGGCG GAAGTGGT CGACGGAGAGG        TGCGCGTGGCTCTGG  64 386
SM2011_a2041 NONE
SM2011_a5011 NONE
SM2011_a2037 NONE
SM2011_a2034 1149799 .. 1149813 -  -7.8  -3.16564   TGCCCAGCGTACGAA               TCGACC TGC GGCCGA               CCCTATTCCATGCGT  57 194
SM2011_a2027 1145374 .. 1145389 -  -4.6  -2.57721   TAATCGACCAAGGCA              GCCCCA GGTC CGGAGC               CCAGCGAAAGCTGGG  43 140
SM2011_a2020 1141960 .. 1141980 -   -14  -2.62184   GCCCCCTGCAGATCA            GGCGGGTG TGTCC CACCCGCC            AATCTGCGAGTAGAT  74 2
SM2011_a2015 NONE
SM2011_a2014 1139557 .. 1139568 -  -7.2  -2.74999   GAACGCGCAATAGGA                GGCG CGTG CGCC                 GTGCGACGACAGCAA  51 300
SM2011_a2012 1137023 .. 1137055 -  -9.7  -3.09671   ACTCGAACTGGAAGA      GCCGGCACGGCTCCC TTG GAGAACAGCGCAGGC      GAGGACAGTCTGTCG  60 355
SM2011_a2008 1135626 .. 1135661 -  -7.6  -4.25074   CATCAAACTTCAAAA    GAGCGCGCGAAG TCGGAGGAGATG CTTCGCGAGCTC     ATTCGTGCGGATGTC  74 248
SM2011_a2000 1132258 .. 1132285 -   -17  -2.73364   CCTTTACCCGAATTA        CGGGAGGCAAGC AGGC GCCCGCCTCCCG         GCGCGGTCCGCCTAC  87 37
SM2011_a1998 NONE
SM2011_a1996 NONE
SM2011_a1995 NONE
SM2011_a1993 1128080 .. 1128111 - -18.8  -4.19746   TGGACGCCAAAAGAA      CACCACTCCGGCAGC GAG GC-GCCGGAGTGGCG      TCGCTCAGAACAACG 100 30
SM2011_a1985 1124305 .. 1124331 -  -3.7  -3.66803   CCGGAATATCGGAAA        TCGTGGCA-TGG GCGA CCAGCGGCACGA         TGACGAGGCTGAAGG  54 472
SM2011_a1978 NONE
SM2011_a1976 1121679 .. 1121711 -  -9.1  -3.13522   ACGGCCTGACCAATA      GGAATGGCAATGTCC GAG AGCCGTCGCCATTCC      TTTCACGCTACAGTC  60 33
SM2011_a1966 1116524 .. 1116538 -    -7  -3.73968   AAAGGGCCGAGGAAA               CGGTGC CGC GCGCCG               TGCAAAGCGATGACG  63 44
SM2011_a1965 1115532 .. 1115548 -  -6.5  -3.85698   CTTCCCGCCGACAAA              CCGACGA TGA TCGTCGC              CGAGGGTGTTCTCCC  65 510
SM2011_a1961 1113515 .. 1113527 -  -3.3  -3.50853   CGCGCCCAACGAGAA                GCGCT CGA AGCTC                GTCGAACGATCGACC  49 202
SM2011_a1959 1111586 .. 1111627 - -10.7  -2.80074   TTGGCCAGAACACGA GGTCGACTTACCGGCGGCG CAAC CGCGGGCGACAAGCCGGCC  GACTACTACCGGAGC  63 250
SM2011_a1956 1109254 .. 1109264 -  -6.8  -3.15579   CCAAGGCCCGAGCAA                 GCTC GCA GAGC                 ACGCCATAGTGGCCA  54 425
SM2011_a1953 1106972 .. 1106982 -  -8.2  -2.71712   GGGTCGCCGTCAAAG                 GCCG AGA CGGC                 ATAAGTGGCTATGTG  54 135
SM2011_a1952 1105903 .. 1105914 -  -3.6  -3.58343   GCCACCACCTTCAAA                CGAC TACC GCCG                 CAAAGAAAGCGAAGA  51 137
SM2011_a1951 1105208 .. 1105218 -  -6.8  -3.21064   TCGAGAATGAAGAGA                 CCGT GCG ACGG                 GCTGAAGCTTCAACA  56 445
SM2011_a6457 1103395 .. 1103408 -  -4.5  -3.65199   AATTCCGCAGGCAAA               CACCA TTCT TGGCG                GCGCACTGGCTCTTG  56 296
SM2011_a1943 1102044 .. 1102075 - -10.2  -2.62515   AAGGCTCCGAGACGA      CATTTGGCTAG-CCG CCA CGGCCCAGCCGAATG      GCAATGCGCGCGTCG  62 1
SM2011_a6454 NONE
SM2011_a1939 1099868 .. 1099882 -  -5.6  -4.16937   AGCAAAGAATAAGAA               TGCGAC GGC GACGCA               TCTCCTCCGTTCCCC  66 113
SM2011_a1933 NONE
SM2011_a6451 1096696 .. 1096724 -  -5.3  -4.07687   ATCGCGCTCTGAAAA       TGGGTGATTCCG GCTTTG CGGAA-CACCCG        GTCGGGCCTACTTTG  64 149
SM2011_a1929 1095463 .. 1095482 -  -5.7  -3.84406   CTTCCAGCAGAAGAA            TGC-CCGC CTGCT GCGGTGCA            GTGAGCAGTAATCGT  61 494
SM2011_a1924 1093364 .. 1093378 -  -7.8   -3.6682   GGCCATTCAGCGAAA               GTCACC GCG GGCGAC               ACCCTCGGCCGCTGC  66 2
SM2011_a1921 1091776 .. 1091788 -  -6.2  -4.39989   AGCAAAGGATGAAAA                CGGC AAGTG GCCG                GTGACACCCTTCGCG  72 115
SM2011_a1917 1089636 .. 1089662 -    -5  -3.05384   GTCGGCTTCATTCAA         TGGCTCGGCACT CCC AACGCCGGTCCA         CGATGCTTTCCAGCT  47 251
SM2011_a1916 1087747 .. 1087763 -  -9.3  -2.87564   CTATCGCGCGACAGA              CGCGCTG CAT CGGCGCG              ACGCACTAAACTGTC  62 31
SM2011_a1907 1084154 .. 1084166 -  -3.3  -3.71917   AGCGGAAACCTTAAA                TTGCG TAG CGCCA                CAGCGACAGCGACAG  52 8
SM2011_a1885 NONE
SM2011_a1884 1068254 .. 1068265 -  -3.6  -3.05384   CTCGCGTGCAGGCAA                GGCC GGCA AGCC                 CGCGGCAGACGCTAC  45 37
SM2011_a1882 1067325 .. 1067337 -  -7.7  -3.26449   GCGGAGACAACTCAA                CTTCG TTG CGAAG                GATGTCGGGAATTAT  58 266
SM2011_a6439 NONE
SM2011_a6438 1066075 .. 1066096 -  -8.6  -2.71791   ACTGCTCCTGTAAAT           CGGGCGGC ATCTCA GCCGCCGG            TCAAAAATCGGCAAG  58 50
SM2011_a1875 1063867 .. 1063886 -  -6.4  -3.61398   TCGTTCCGTGAACAA            CCG-GAACG AGC CGCTCACGG            CGGAGGAGCGCCGGA  58 172
SM2011_a1867 1058477 .. 1058491 -  -4.2  -3.71649   CGCGGAAACGGGAAA               GGGTGT GAT ACACTC               TTCTGCCCTGCCGGG  54 84
SM2011_a1851 1049046 .. 1049058 -  -3.3  -3.34398   GCCTCTCTCTAAAGA                CCGAC GAC GCCAG                GAAGCCCCGAAATGT  47 6
SM2011_a1850 1047693 .. 1047726 -   -19  -3.36581   TAAATCTCCAAGCAA     GAAGGGCGCGGCACC TTTCC GGT-CCGCGCCCTTC     CTCATAAGCCTGCGC 100 44
SM2011_a1835 1039241 .. 1039260 -  -9.2  -3.41878   CGGCTGAATGCACAA            CGGTGCCG CACG CCGCACCG             ATATGGATTGCACGC  67 187
SM2011_a1832 1036964 .. 1036974 -  -2.4  -3.91197   CCATAAAGCAGCAAA                 TCCG GGG CGGC                 CAATTTACGGGCTCG  54 403
SM2011_a1828 NONE
SM2011_a1825 1033753 .. 1033774 -  -5.1  -2.66098   AATAGTCCAAAGTTA           GAATGCGGA GCGG CCCTCATTC            GCACACGAAACCGAA  43 48
SM2011_a1823 1032585 .. 1032599 -  -2.8  -3.57406   TCTCGACCACAAACA               TCGG AATAGGA CCGA               GGCCCTGTGCGGATC  49 170
SM2011_a1822 NONE
SM2011_a1821 1030673 .. 1030724 - -10.7  -3.02144   TCATTCCCTTTAACA TTGGTCG-TCGCCACTCCGCCCGC TGGAG GCGGCCGGAGTGGCGCTCGGCTGA GCAACCCCAGTGAAG  66 42
SM2011_a1820 NONE
SM2011_a1819 1028385 .. 1028395 -  -2.4  -3.53091   ACGGTCCTTCCTAAA                 CGGC CCA GCAG                 GAGCAGCCGAGTGCG  47 10
SM2011_a1817 NONE
SM2011_a1814 NONE
SM2011_a1811 1025274 .. 1025301 -  -2.6  -3.05022   GGTTCGAGATAGAGA        CTGTCG-CCCGAA GCC TCCGGGGCGACCC        CGATCAGGGGGAAAC  41 47
SM2011_a1809 NONE
SM2011_a1808 1023612 .. 1023632 -  -4.5  -3.61894   AACGCCGTCGAAGAA            CTCGATGGG ACG CCCGCCGGG            GCTCGAGGGCGTCAT  53 378
SM2011_a1803 NONE
SM2011_a1801 1020944 .. 1020971 -  -2.1  -3.28712   CGGCCTCTCGCAGAA       CGGTGCGTGAACC TCTC GATTCAC--ACCG        CTCCCATCAGGTAAA  44 32
SM2011_a1799 1020150 .. 1020160 -  -5.4  -3.78953   AGGCCCAGGAGTAAA                 TCAG GGA CTGA                 TCGTTTCCTGTTCCA  58 274
SM2011_a5032 1014434 .. 1014451 -  -7.7  -3.54741   TACGAGCTCGTCAAA             TGCCACC ACTA AGTGGCA              TATAGAGGCATGGAG  62 287
SM2011_a1784 1009414 .. 1009428 -  -2.8  -3.38046   CTTTCAGCTGAAATA               TGATTG CAA CATTCA               AGGCGGAAGAGGTCA  47 65
SM2011_a1783 1009067 .. 1009079 -  -3.3  -4.30576   TCGCGACGACCAAAA                TCGAC ATG GTCGC                TGAGTGACGGCATCC  64 158
SM2011_a1780 NONE
SM2011_a1779 1007126 .. 1007141 -  -4.6  -3.55487   GGAGATCAAGGACAA              CATCCG GGAG CGGAGG               CGCATGGTGAGCACG  55 87
SM2011_a6409 NONE
SM2011_a1770 1004138 .. 1004151 -  -8.1  -3.09492   CTGGGAAGGGGAAGA               CGAGC GAGA GCTCG                ACGGGTCGGGGATTT  57 140
SM2011_a1766 NONE
SM2011_a1765 1001539 .. 1001565 -  -3.1  -3.77831   CCATCAACATGGAAA        CGCTGGCATC-CA CGT TGCGATAC-AGCG        CGACTAGAAGCTCGA  52 285
SM2011_a1759  998208 ..  998225 -  -3.3  -2.79823   CGGCTGAAAAGCAAG             CCCCTCT TCCA AGCGGGA              TCAGGCTGGACGTGC  41 26
SM2011_a1757 NONE
SM2011_a1755 NONE
SM2011_a1754 NONE
SM2011_a1753 NONE
SM2011_a1751  992569 ..  992579 -  -3.2  -3.57144   CTTCCCACCTGCAAA                 GGAA GGC TCCC                 GCACCGTTGCTCGCG  51 459
SM2011_a1749  989638 ..  989658 -  -7.6  -3.74902   AGATTCAGGAAAACA            CGACGTTC CAGCT GAACGTCA            ACAATTTGTTCGACG  65 166
SM2011_a1746 NONE
SM2011_a1745  985262 ..  985296 -    -7  -3.21668   ATCACGACAGCAAGA     GTGGACGAGGGAGCTG TCA CAGGTCCCTCACACGC     TGGCGCCGGACGATC  56 7
SM2011_a1742  984204 ..  984244 -  -2.3  -3.28712   TCGGTTTTGTCATAA  CCGGCCGTCAATCCGCTGG CGA CGAGCAGATGGTCGGTCAT  CACGACCCTCCGATC  44 25
SM2011_a1741 NONE
SM2011_a1740  981987 ..  982010 -  -7.4  -3.05384   CTTCTCGGTAGCCAA          GCCTTAAAGG TAGG CCTTCAGGGC           ACCGTTCGGCAGGAC  54 350
SM2011_a1736  979326 ..  979345 -  -3.5  -3.72893   GAGGGCTTTATGAAA            GCCGC TCGCGCCATG GCGGC             AGAGGTGCCGATCCG  54 403
SM2011_a1734 NONE
SM2011_a1732  976672 ..  976720 -  -4.6  -2.87132   CGGCCGGCTGACAGA GCGGCGTCGCCATTTCGCGAATTT GGT AACTTTGC-ATA-GGCGACGCCTC TTTTTCGCTAAACGT  46 33
       betB2  975191 ..  975204 -  -3.7  -4.46212   TCGCGTATGAGAAAA               CGGCC GATT GGCTG                AGGTTCTGGGCCGTC  68 60
        proX  973901 ..  973925 - -18.7  -3.75897   AAGTCGGAAGTGAAA          TGATCTCGGCG GAG CGCCGAGATCA          CCAAAAGCTCGCCTC 100 144
SM2011_a1726  971895 ..  971910 -    -6  -3.37537   GATTCCAAAAGGCAA              CCGGTC ATAC GGCCGG               CGAGTATGTCCAGCG  52 368
SM2011_a1724  970285 ..  970323 -   -13  -2.59748   CACCTGGAGAAGCCA   GACGAGACCGGCTCGCCC GAT AGGCAAGCCAGACCCGAC   GACGTCTCTCGTCGA  71 186
        ade4 NONE
SM2011_a1717  965569 ..  965597 - -18.1  -3.28684   AAGCACCGATACGAA        CCGGCGGCGCCGC TAC GCGACACCACCGG        ATGAGATCATTGAAC 100 32
        ade3  963595 ..  963629 -  -6.5  -2.81535   GACCCAAAGAGATCA    TTCGCTGCTACCGCCT GCTT AGCCCGTA-CAGCGAA     CTAGCCGGTCATTCA  49 140
SM2011_a1706  960771 ..  960800 - -17.9  -3.75153   GTTGGTCAACCGAAA       GAGCAAGCCAGCG AGGA CGCCGGCTTGCCC        CCAGATAGCTGCGTC 100 376
SM2011_a1704  958836 ..  958850 - -12.8  -3.33815   AGCCGTGGCAATCAA               GCGGCG CTG CGCCGC               AGATGCTTCAACGCG  79 7
SM2011_a1702  957440 ..  957461 -  -4.5  -4.08216   GCACTCGCCGCAAAA           CTGATCAAT GCAT ATCAATCAG            GGATTCGCGACGACC  61 219
       syrB1  956041 ..  956052 -  -7.2  -3.81926   TACGTGAAAAATGAA                CGCC GATT GGCG                 CCGTTGCATTCCTGC  66 240
SM2011_a1697  955175 ..  955191 -  -9.4  -2.71011   ATGGCGTCTTAATTA              TCCCCG TCGCT CGGGGA              CCCTCCGCCAGGCTC  61 241
SM2011_a5033  953027 ..  953045 -  -2.3  -4.11216   GCTCGACCGCGAAAA            GGTGACCG TCAG CGG-CGCC             CGCATGGTACCGCCC  59 78
SM2011_a1683  945271 ..  945299 - -20.3  -3.01712   GTCCGTCCCGGAACA        CGGCGGCCCGG GCCTGAT CCGGGCCGCCG        CACGCTTAGTTGCCG 100 31
SM2011_a1682  944157 ..  944183 -    -8  -2.94144   GCTTCATCCAAACTA         CTTTCACCAGAG CTC CTCTCGTGGAAG         GCGCGGGACCGGCGG  56 51
SM2011_a1680 NONE
SM2011_a1678  941148 ..  941164 -  -3.7  -3.25823   GCCTTGGTAGACCAA              TATCCCA CTC TAGGACA              GGGACGGGAGGCGGC  47 71
SM2011_a1677 NONE
SM2011_a1676  938258 ..  938279 -  -2.9  -3.95071   CAAAGGTGGAAACAA           TCCGGCATGG CCA CC-CGCCTGA           CTTCCGGGACTGAGT  58 99
SM2011_a1674  937009 ..  937023 -  -5.6  -3.14132   CGGCCTCCGGAGCAA               TCGGCG GCG CGCTGA               GCGATGTGGGCATCA  51 334
SM2011_a1666  930617 ..  930627 -  -2.4  -3.75581   TGCGATAAAAGAAGA                 GCCC TGG GGCC                 GCCTGTCGAGACCTG  51 263
SM2011_a1664 NONE
SM2011_a1662  926130 ..  926148 -  -3.1  -2.89511   GCACAGAACGGAAAC             CACGGAA CGAAC TTCCCTG             CGATCGATCGCCCTC  42 108
SM2011_a1660  925203 ..  925233 -  -6.1  -3.06915   ATCTATCTGATCGAA      CCGAAGCT-CAACG CGGC CGCCGTAGCATCGG       GACGAGCGTCGGCGA  52 2
SM2011_a1658 NONE
SM2011_a1657  924176 ..  924210 -  -5.5  -3.04144   CGCGCACGGTGAAGA    CCCCGGGGC-GGCTAC CGGT GCTGCCTGCCGTGGGG     CACTGTGCGAGAGTT  49 2
SM2011_a6371  923369 ..  923386 -  -6.9   -3.1585   TGATTGAACCCAAGA             TTGCGGC GATC GCCGCAG              GGGTCGCAAAGAAGT  54 172
SM2011_a1651 NONE
SM2011_a1650 NONE
SM2011_a1649 NONE
SM2011_a1647  916715 ..  916733 -  -4.4  -3.22475   TCGACTTTTAGAACA             GGCGCGTG TGT CATGCGGC             GGCCTTTCCTTGGTT  49 17
SM2011_a1646  915549 ..  915572 - -12.4  -4.63218   TCTCGCTCAAGAAAA          TGCCCGGTGT CTGG ACACCGGGCT           AGTTGGCGGGAAGAA 100 159
SM2011_a1635  908141 ..  908169 -  -2.9  -4.11371   CAATACCGCCGAAAA        CTCCCACCGCCCG CCC CGGTCCGCCGAAG        TAAACTGCGACCCAG  60 379
SM2011_a1630 NONE
SM2011_a1629  904828 ..  904856 -    -6  -4.11216   CGGCCATTCTGAAAA       GCTCG-CCGATCA GGAG CGATCCGTCGAGC        TCGCCGGACGCCTGG  67 324
SM2011_a1625  903126 ..  903159 - -14.7  -3.07443   CCATACCTCACCTAA     GACACGTCGCTAACG ACGT CGTTAATGACGTGTC      TTAGGTCATCAAGGC  83 193
SM2011_a1608  896723 ..  896733 -  -6.8  -3.75332   AGTCCTCAAGTCAAA                 GCCA ATT TGGC                 GCAGGACCCCTTGGT  63 306
SM2011_a1602  893438 ..  893453 -  -4.6  -4.08767   CCGACGTCGCCAAAA              TGGAGC ATCG GCTCCG               CTGATATTGCAGCAA  62 111
SM2011_a1597  890441 ..  890460 -  -7.2  -3.98083   TAGCTAACGCAGAAA            GCCTCA-CA GTT TGATGAGGC            CGAAATTTTGACTCG  68 159
       cyaI3  883740 ..  883752 -  -4.8  -4.13767   CGGCCTACTTTAAAA                GGCA TGTCG TGCC                TCCGCTCCGCTCGCA  64 73
SM2011_a1589  882764 ..  882776 -  -3.3  -3.06183   TCGATCGTGATTGAA                CCTCG GTC CGACG                CATCTCTTTGAGGAA  43 168
       syrB2  879282 ..  879294 -  -6.2  -3.63283   AAAGTGAAAGGACAA                CGCC GGTCG GGCG                CCGCGCCTGATGACC  58 257
SM2011_a6347  878656 ..  878675 -  -6.4  -3.21924   GCAGCCCCGATAATA            CGCTCG CCCGGGCC CGAGCG             GTAGCATGCATCGGG  54 464
SM2011_a1585 NONE
       cyaF5  876387 ..  876402 -  -2.5   -3.5944   ACCTACACTTTGAAA              GTACG CACTTC CGCAC               GGAACACGGTTACAC  47 59
SM2011_a1582  874741 ..  874753 -  -3.4  -3.53444   CCACGGCCTCTCAAA                TTGC CGCGC GCAA                CGGCTTTTCCGCCCC  49 161
       cpaA2  872064 ..  872078 -  -2.7  -3.56092   GGATCATGGGTCAAA               CCTCG TCTTG CGCGG               CGGATCGCCACGCGA  47 45
       cpaB2 NONE
       cpaE2 NONE
SM2011_a1572  868926 ..  868938 -  -9.1  -3.65046   GTCCGATCGCAAGAA                CCGCA ATT TGCGG                TACCTTGAAGTTGCG  69 162
       pilA2  868506 ..  868525 - -13.6  -3.66178   TCGTTGAATGCGAAA            GCGGAAGG CATG CCTTCCGC             TTCGCTTGGCAACCG  88 60
       cpaF2 NONE
SM2011_a1564 NONE
SM2011_a1562  864966 ..  865009 - -16.7  -3.87318   AACGAGGACATGAAA GCTGTGGCGCCCACGCGTC GGATTT GACGCGCAGGCGCCAGACC GCCCCCCTCTAGGTG 100 34
       nuoJ2 NONE
       nuoK2 NONE
SM2011_a1541  850496 ..  850516 -  -2.6  -3.29252   CGTCACCAAAGAAAT           CGACGA-CA GGCT TGATCATCG            GATCACTCCGTCCGC  44 20
SM2011_a6338 NONE
SM2011_a1538 NONE
       nuoM2 NONE
       nuoN2  845563 ..  845578 -  -3.9  -3.72576   CCCGCCTGTAGCAAA              CGCCG ATACAG CAGCG               AAAACCCGCCTTACC  54 36
       nuoA2 NONE
       nuoB2  844531 ..  844541 -  -4.6  -3.34043   GTCATGATGCTATAA                 CCCG TCC CAGG                 GGCGTCCCGGTAAGT  51 1
       nuoC2 NONE
       nuoD2 NONE
       nuoE2 NONE
       nuoF2 NONE
       nuoG2  838310 ..  838320 -  -6.8  -3.27022   GGGAGTCGAGATCAA                 CAGC AAG GCTG                 CAGCATATACCCCCT  56 61
SM2011_a1515  835509 ..  835523 -  -4.2  -3.05775   ATCATCTCGCAAAAT               CGCCAA TTG CTGACG               CTGCACTTCCCGGCG  45 119
SM2011_a1503 NONE
SM2011_a1501 NONE
SM2011_a1500 NONE
       gst17  825554 ..  825566 -  -7.7  -3.08133   TATCGACGCACGCAA                TCCAG TCG CTGGA                ACGCCCTCAAGCGGC  57 32
SM2011_a1491 NONE
SM2011_a1488 NONE
SM2011_a1487  819098 ..  819127 - -17.1  -2.60075   TCGCCTGTAACGAAG       CGGCGGCGCCGAC CGAA GCCAACGCCGCCG        AGCAAAGAGCACGGA  85 49
SM2011_a1485 NONE
SM2011_a5009  816946 ..  816962 -  -8.7  -3.08966   GGAAATCGCAGGGAA              GCTTCCG AGG CAGAAGC              TCGCCATGATATCGA  57 349
SM2011_a1478 NONE
SM2011_a1476  810861 ..  810888 -  -2.6  -3.38272   CAGCAGGATGGAGAA        GAGTCGGAGC GCGCATTT GCGCCGATTC         CGCAGGATCTATGCC  46 59
SM2011_a1473 NONE
SM2011_a1471  808782 ..  808823 - -12.3  -4.18488   ACCGATTCCAATAAA TCAGAGCGGGATGC-AGGCG GGA CACCCGGCCTTCCGCTCTGA TGCGTGCCCCTATCA  90 48
SM2011_a1467 NONE
SM2011_a1466 NONE
SM2011_a1465 NONE
SM2011_a1462  805147 ..  805161 - -12.8  -3.63744   CGTTCCTCGAAAAGA               CGGCCG GCA CGGCCG               ATCCGGTATATCCGC  84 119
SM2011_a1461 NONE
SM2011_a1459  802937 ..  802967 -  -5.5  -3.39908   CCTGTGCAAAATATA      TGTCAGTCCATGCA ATTT CGCA-AGACCGACA       CGACCGCCAATCGAT  53 61
SM2011_a1456  802515 ..  802526 -  -7.2  -3.93369   TGAACCTCAAGCAAA                GCCC CCGA GGGC                 CATGTGATCGAGATA  66 5
SM2011_a1455  801551 ..  801577 -  -6.4  -3.62096   GCCGAGTACCTGAAA         CTGCCGCCCATC CGT GACGAGCGGGCG         CTGAAGCACTTCCTC  59 439
SM2011_a1452 NONE
SM2011_a1450  798826 ..  798846 -  -3.1  -3.67976   CGGATCAATGTGAAA            CCCCCGCCA CCC CGACACGGG            CGGCCCGTCATCCCG  52 41
SM2011_a6326  798509 ..  798531 -  -4.9  -2.73124   GCGCAGTTTGGAAAC          GAC-CTTGCT CTCC AGCAAGTGCC           TCAAGACAAGTCAAC  44 26
SM2011_a1447  796650 ..  796660 -  -6.8  -3.66772   CGAAAGGGCGAAGAA                 GCCT GGA AGGC                 CGCGCAGGCGGTATC  59 425
SM2011_a1442  794977 ..  794987 -    -4   -2.7976   CTTAAGACGGGAAAT                 TCAT ATG ATGA                 CTTTTGAGATGAGTC  43 39
SM2011_a1440  793997 ..  794020 - -15.3  -2.90212   CGACGACGTTAGAGA          CGGGCGCCA TCCTCC TGGCGCCCG           CCCGATGTTTCTTTT  84 40
SM2011_a1438 NONE
SM2011_a1437 NONE
SM2011_a1435 NONE
SM2011_a1434  788807 ..  788823 -  -5.1  -3.07443   GGAGACTTGAGTCAA              GCGCT CGGGGAC AGCGC              ACCGGAGTATCCGGC  47 83
SM2011_a1431  788046 ..  788059 -  -3.8  -4.15841   TGACCAAAGTACAAA               CCGT CCGCCC ACGG                ATTTCGCCGGAGTTT  62 156
SM2011_a1430  787064 ..  787080 - -13.7  -3.36515   CCTGATGGCGAAAGA              CGCGCTC GAA GAGCGCG              TTCAATTCAACATAG  77 71
SM2011_a1427  785059 ..  785087 - -13.2  -2.51547   CTCGGATAGGAATAT       CGGGGACGGTCAGC TGT GC-G-CCGTCCCCG       GAAAGAGGGTCAGGA  71 35
SM2011_a1424 NONE
SM2011_a1421 NONE
SM2011_a1418 NONE
SM2011_a1417 NONE
SM2011_a1415 NONE
SM2011_a1414  777148 ..  777172 -  -5.5  -3.05384   CTGCGTCGCAGTCAA          GCGTCGCGTCG GAT CGCGGCCACGC          CCAGGCGCTAGGCTG  49 141
SM2011_a1413 NONE
SM2011_a6319  776244 ..  776260 -  -3.6  -3.15861   TACCATGTCCACCAA              GCCGGA GAATA TCCGGG              CGAATTTCGAGATAT  44 219
SM2011_a1409 NONE
SM2011_a1408 NONE
       ttuD3  771612 ..  771639 -  -6.2  -3.10975   ACGGACGATCGAACA        GCTGCGCCAGAA CCTT TCCTGGTTCAGC         CACCCGATTCCGGCT  49 218
SM2011_a1400 NONE
SM2011_a1398  768629 ..  768639 -  -3.2  -4.16943   TTGGAGACCTCAAAA                 TCGC GGA ACGA                 GCATGCCGGCATCTG  60 9
SM2011_a1397 NONE
SM2011_a1394 NONE
       etfB2  765813 ..  765830 -  -2.6  -3.53012   GCGTTTGTCCGGAAA             CCGGTA TCCACT TTCCGG              ACGCATGAACTTAAA  47 36
       etfA2  764579 ..  764591 -  -5.5  -2.52635   AGCGTCAGCATCAAG                CGCTA TGT CAGCG                AAGGCCTCGGCTTTT  45 229
SM2011_a1386 NONE
SM2011_a5031 NONE
SM2011_a1381  760890 ..  760900 -  -6.8  -4.19506   ATCGTAAGGGTAAAA                 GCGA AGC TCGC                 GGCGGCAACCCTTTC  71 59
SM2011_a1379  759298 ..  759309 -  -3.6  -3.28791   ATCTCTTCCTCAGAA                GCCC CATG AGGC                 AGCCTGACCTTCGCA  47 74
SM2011_a1377 NONE
SM2011_a1375  756243 ..  756254 -  -2.2   -3.1855   CGCGGCAAGAGTTAA                TCCA CCTG CGGA                 CGACGCTATTCGGTT  44 31
SM2011_a1373 NONE
SM2011_a1374 NONE
SM2011_a1371  753304 ..  753339 -  -8.2  -3.84451   GGCCGGAAACCGAAA    GCACGG-GGGCGACCGT CAT ACTGCCTCCCTCCATGC    CTGTTCGCCGGCCTT  68 5
SM2011_a1370 NONE
SM2011_a1368 NONE
SM2011_a1367 NONE
SM2011_a6316 NONE
SM2011_a1365  750260 ..  750272 -  -4.7  -3.47941   GAGCAAGCATTACAA                GCTGG GGT CCGGC                CCGTTCTCGCCCAAG  53 72
SM2011_a5008  749659 ..  749673 -  -3.4  -4.25104   TCCCTCCGATCAAAA               GCCACG TCG CGCGGG               TACCGACAAAAGCGT  60 257
SM2011_a1364 NONE
SM2011_a1363  747221 ..  747271 -  -2.3  -2.73124   CGCCAGCCGGCAAAC GGCGGCGCGAGGGCGAGACTTCCG CAGC CGGCATGCTCGCCATCATTC-GCC CTTTTCGTTCACGCC  39 17
SM2011_a1362  745494 ..  745517 -  -4.4  -2.67428   CTGACGAACAACGCA          GGCGGGAATC GCAA GTTCCCCGCA           CGACCGTCGCGCTTC  43 374
SM2011_a1361  745139 ..  745153 -  -7.8  -3.08679   CTTTCGGACGTAATA               GAACGG CGG CCGCTC               AGTCCCACAGGACAG  57 147
SM2011_a1356 NONE
SM2011_a1355  741644 ..  741660 -  -9.3  -2.57132   CGGCTGGCTGACAAT              CGAGGCC TTC GGCCGCG              CATTGAAAGACCTCG  56 464
SM2011_a1353 NONE
SM2011_a1351 NONE
SM2011_a1349  737785 ..  737803 -  -3.1  -2.76466   AGAAAATGAAACTCA             TCGGC CTCCTCATT GCCGA             CCGGGGACTACTCCG  41 33
SM2011_a1347  736652 ..  736666 -  -2.8  -4.62471   TGGAACCCGGAAAAA               GTCG TGCTCTT CGAC               GGCGGAAGCGGGATG  69 170
SM2011_a1334 NONE
SM2011_a1332 NONE
SM2011_a1331 NONE
SM2011_a1329  726014 ..  726043 - -10.1  -2.79842   AAGACCGAGGAATGA       TCCATGGACTTGA ATCA TCAAGTCCATGAG        GCTTGGATTCTCGGC  63 93
SM2011_a1328  723796 ..  723806 -  -3.2  -2.72379   CGAATGGTCGAATGA                 CGAC TGG ATCG                 CGCCCTCTCGCTTCG  41 419
SM2011_a1327 NONE
SM2011_a1326  722047 ..  722066 -  -4.2  -2.82623   GGTTCGTCAGAACTA            GCGGAC GGGTTCAG GCCCGC             CTCGACACGACGATG  43 16
SM2011_a1325  721655 ..  721672 -  -9.1  -3.63744   TTGGGCGGGAAAAGA             CG-CGGGC GAA GCCCGTCG             CTCCGTTAGGGGCGG  69 85
SM2011_a1322 NONE
       virB1 NONE
       virB2 NONE
       virB3 NONE
       virB4 NONE
       virB5  715997 ..  716015 -  -3.8  -3.56092   TGACGATGCTGGAAA             GCAGCG CTTCGTC CGCTAC             CAGTTCTTCGACTGT  51 109
       virB6 NONE
       virB7  714621 ..  714631 -  -3.2  -3.08642   AGACCATCGAGTCAA                 CCCT CGC AAGG                 ACGATAGGATGCGTC  43 11
       virB8 NONE
       virB9 NONE
      virB10 NONE
      virB11  710755 ..  710780 -  -3.3  -4.07568   GCGCTGCCCCGAAAA         TCCTTGCACTGG CTC CCA-TGCAGAGA         GAGTAAGAACATCCA  58 150
SM2011_a1297  707724 ..  707742 -  -8.1  -3.85698   GGCGGCCCGCACAAA             CCAGGCC CGCCC GACCTGG             CTGGCAACCCTGACT  68 75
       adhA1  706449 ..  706497 -   -16  -4.34402   CCGCTTAGACCAAAA GTGAGACTACCGCCTGTCGACC GGATA GGTCGCGAGGCGGTAGTCTCGT CGACACCGCGTCTGT 100 50
SM2011_a1288 NONE
SM2011_a1285  700643 ..  700655 -  -4.7  -3.77196   GCACCACTGACGAAA                CGCTC GCG GGGCG                CCTGTCAATCTGGAA  56 309
        norE  698401 ..  698426 -  -3.8  -3.57017   CAAGCGCAAAGAAGA         GCGGCCAGGC GATAAG GCCGACCCGC          AAGACCCGCGGTCCC  51 234
        norC NONE
        norB NONE
        norQ NONE
        norD  693518 ..  693553 - -23.5  -3.25459   ATCAAGCTGAGAACA    GAAAGGCCCGGCATG TACGCG CATGCCGGGCCTTTC     ATCTCGCGGCCTGCC 100 47
SM2011_a1264  690935 ..  690958 - -12.4  -3.40597   TCCGGGATCGAAAGA          GGCCGGGATC CTGT GATCCGGGCC           CAATTAGGTTTAAGC  76 229
SM2011_a1261 NONE
SM2011_a1259 NONE
SM2011_a1256 NONE
SM2011_a1255  686812 ..  686828 -  -2.1  -3.91032   GAAGGATGCGAGAAA              CAGCAAC GAC GTGGCGG              ATCCTGGCAACATAG  53 263
        nirK  683308 ..  683327 -    -2  -3.53012   CTCTGCTCTTGGAAA            GTGCGGCCA TGG CGGCCTC-C            TGACGACATCCCTTC  47 114
        nirV  681909 ..  681921 -  -4.8  -5.12617   CAATGAGGGAAAAAA                GCAG GGGAT CTGC                GGCGGTGACAGAAAG  83 507
        nnrR  681083 ..  681094 -  -5.8   -4.3277   GAGATAGAATAGAAA                GAGC ACCT GCTC                 TTTGATGCTTGTCAA  69 62
        azu1  680513 ..  680551 - -17.5  -4.47328   AATGGCAGCACAAAA  CGGACCCGTCGCAG-ACA GGAT TGCACTGCGCCGGGTCCG   TTATTGATTTTGCGT 100 51
        napE NONE
        napF  679611 ..  679643 -    -9  -2.88999   GCTGGAGATATGATA      GGGCGCGCTCCGAT CAGAC ATGGGCGCGCTCCC      ACTCGACCTCGCGAA  59 6
        napD NONE
        napA NONE
        napB NONE
        napC  675332 ..  675342 -  -2.4  -4.22652   GGACATGATGCAAAA                 CGCC GAG GGGG                 TACACCTGGTGCTCG  59 370
        fixL NONE
        fixJ  672395 ..  672406 -  -7.2   -3.1505   ACGAGCCGCCATTAA                GCCG CTTG CGGC                 AACGCGCCGCATTGC  54 60
       fixT1 NONE
       fixK1  671248 ..  671271 - -13.8  -3.10464   CCAGGAAGCCGAAGA          GAGGGCCCGC TTTC GCGGCCCCTC           CGACAACCTCAATTG  79 34
        fixM  670581 ..  670600 -  -3.4  -3.90048   GGTTGGTCAAAAAGA            GGCCGGAC AGCG GTACGGAC             AAAGACGTCACGAAG  55 169
       fixN1 NONE
       fixO1 NONE
       fixQ1 NONE
       fixP1  666962 ..  666978 -  -2.1  -3.27915   TAGAGGAACGAAAAT              CTGACCA GGC CGGCCTG              TGATCGGGAAGCGGC  44 74
        fixG NONE
        fixH NONE
       fixI1 NONE
       fixS1 NONE
SM2011_a1207  661502 ..  661514 -  -3.3  -3.72051   CGCAAGAAGGTCAAA                GCGGA TTT TCCGA                TCCAGCGCCTGTAGC  52 47
SM2011_a1201  660907 ..  660925 -  -6.6  -4.15044   TCGCGTGCGAAGAAA             CGCACGAC GCG GTCAGGCG             ATCGGCGGTGGGCCT  69 19
SM2011_a1200  660145 ..  660161 -  -2.1  -3.15544   CGTCAGCCCTAGGAA              GCGCGCC TCG AGTGCAC              CCTTCCCTCCGCCTC  41 49
SM2011_a1198  658468 ..  658489 -  -5.8  -3.60792   CGGTTAAGCCCGAAA           CTTGGCTC CGTCCC GCGCCAAG            CGTACTCAGCGCCGG  55 31
SM2011_a1197  658072 ..  658091 -  -6.4  -4.34263   GGGTAAGAAGAGAAA            CCGAGCGCT ACC AGCGC-CAG            AAGAGCAGAGCCCAT  72 13
SM2011_a1195  657235 ..  657247 -  -6.2  -2.71791   AGTCGTGCGTCAAAC                GGCC GCCTG GGCC                TGGGTTTCGAACCGC  49 7
       nnrS2 NONE
SM2011_a1192  655260 ..  655274 -  -4.9  -3.63991   CAGCATGCTGAAGAA               GGCGC TCCAG ACGCC               GCCGCGGAAGGTCGT  55 441
SM2011_a1178  644187 ..  644204 -  -2.6  -3.74693   CTTCACCGCAGGAAA             CCGATG AAAAAG CCTCGG              AGGGTCTGGAGTAGT  51 162
SM2011_a1176  643341 ..  643351 -  -2.4  -3.90588   CACCTTCCAATGAAA                 CCGC AAC GCGC                 TGCATGATACCAATA  53 217
SM2011_a1174  642450 ..  642465 -  -4.6  -3.14344   GAGGTTGCGCAGGAA              CTTGGC GGCG GCCATG               TTGCCGGCCTTCTCA  47 38
SM2011_a1172 NONE
SM2011_a1171  641592 ..  641615 -  -8.8  -2.73483   ATTCGATGGCAAGGA          GCTA-GCGCCC GAC GGGCGCGTCGC          AGTAACCGCGGCTGA  54 462
SM2011_a1162  636048 ..  636060 -  -3.4  -3.31144   GCTCGAGCCCCACAA                GCAA ACCTA TTGC                CAGAGCAAGTCCCAG  45 213
SM2011_a1161  635818 ..  635828 -  -4.6  -2.72379   CCAATCCCGCAATCA                 CGCC GGT GACG                 CGAAATCCTCATCGT  44 12
SM2011_a1160  635249 ..  635262 -  -5.2  -2.80816   GTTTTAGTCATCAGA               GCGG CACCAC CCGC                GGCAAAGATCAAAGC  47 0
SM2011_a1159  634764 ..  634777 -  -2.3  -2.94299   CAACATCTCAAATGA               CGGAG ATTG CTTCG                CGGGCTAACGCGCGA  40 94
SM2011_a1158 NONE
SM2011_a1156  632529 ..  632544 - -10.4  -3.47349   CGTGGAAATTGACAA              GTGGCG GGCT CGCCAC               ACGGCGCGCGGACGA  68 121
SM2011_a1151  627994 ..  628022 - -18.3  -3.05384   TGCTCTGCCACCCAA        TAAAGGCGCCACT TAC AGCGGCGCCTTTA        TTATTTGCTCTCATT 100 36
SM2011_a1139 NONE
SM2011_a1138  619582 ..  619611 -  -5.7  -3.88291   CATCAGGTCGACAAA       GCGTACCGGCTG ATCGAGG CAGCCGGTT-GC       CATTTCGACTTGCAG  62 446
SM2011_a1131 NONE
       degP4  614581 ..  614591 -  -6.8  -3.06183   TCCACTCCTAGCCAA                 GGCA ACT TGCC                 GGACGTGAACGCCCG  54 48
SM2011_a1126  613062 ..  613072 -  -8.2  -2.52464   CGTTCGTCGAATCGA                 GCCC TTC GGGC                 AGACCCAGGTGTCGG  53 395
SM2011_a6262  607771 ..  607798 -    -9  -2.63596   TGGGATTTGAGATCA        GC-GCCCCGGGGC CAG GCCTCGCGGCCGC        GCGTATTCATCGATT  57 391
SM2011_a1113  605214 ..  605227 -  -3.7  -4.62069   GGCGCACCCGAAAAA               CGCCG CACT CCGCG                ATTTCCATCTCTGGC  72 487
SM2011_a1104  603660 ..  603675 -  -5.4  -3.32844   GCGGCTATTCGAGAA              CAACCA GGAA TGGTCG               GCCGGGCGTCTCAAC  53 256
SM2011_a1097  598986 ..  598996 -  -4.6  -3.72576   GCCTGCCGGATCAAA                 CGAC TGA GCCG                 GGCCAACCATCCGAT  58 226
SM2011_a1092  596919 ..  596933 -  -2.8  -3.17075   GGTGCGTGAATCGAA               TGGC CAATGAT GCCA               CGAACGCGTTTGAAG  44 281
SM2011_a1086  593258 ..  593268 -  -2.4  -3.53811   CTGATCGCCGGGAAA                 CGCC GCA GGTG                 AAAACGAGAAAATTT  47 45
SM2011_a1084  590729 ..  590753 -  -3.5  -2.71681   CAAGTTCGCCAAGTA          TCCATCACTGA GCG TCAACGGCGGA          CGCCAACCATCGCCA  41 5
SM2011_a1082  589832 ..  589847 -    -9  -3.05384   CGTCTGGCGAGCGAA              GGGATG GATA CATCCC               GAAGATCCGCGTGGC  60 196
SM2011_a1076  587505 ..  587516 -  -4.4  -3.41878   GCTGGCAAGGGATAA                TGGA GTGC TCCA                 AGTCGGCTATGAAGA  51 32
SM2011_a1065  582035 ..  582047 -  -4.1  -3.72775   ATCTAGCAAGAAACA                TGGAA GCC CTCCA                AAGTTGAAATGGTAT  54 65
SM2011_a1063 NONE
SM2011_a1062 NONE
SM2011_a1060  579578 ..  579590 -  -5.5  -3.85698   GGCCGTCGCGAGAAA                GCTCG CGA CAAGC                CGGCAGACCCGTAAC  61 89
SM2011_a1057 NONE
SM2011_a1056 NONE
SM2011_a1053 NONE
SM2011_a1052 NONE
SM2011_a1050  575534 ..  575561 -  -2.7  -3.40299   GCATCATACCCACAA        GTGCGAATACA AGTTCA CGCATTCCCAC         CTCCCATGGTTTCAT  46 229
SM2011_a6250  574744 ..  574758 -  -2.8  -2.57931   GGGACCGTCGACAAG               TTCATC GGC GATGGA               GTGATGGCCGTGTTC  40 460
SM2011_a1032  568981 ..  569008 -  -5.7  -2.78762   ATATTACCAACATTA       CTCCTACCCACTT AGCT AAGTGGG--GGAG        CATGTCCGGGCCTTT  47 52
SM2011_a1030 NONE
SM2011_a1029  567631 ..  567658 -  -8.5  -3.29263   ATATCGCCTGTACAA       GCCGCTCG-CCCT TTCC AGGGACGAG-GGC        TTGACCGGGAACCAA  63 116
SM2011_a1028  567318 ..  567329 -  -2.2  -3.91084   CCATTGCGAAGCAAA                GGAC GGCA ATCC                 GGACGAACCGGGGAA  53 132
SM2011_a1024  566167 ..  566179 -  -4.8   -3.6215   GTAAGTGATGCCAAA                GCAG GAATA CTGC                TACAAAGGCGCTCGC  53 411
SM2011_a1021  565425 ..  565446 -    -5  -3.35679   GCTCTCGATCTACAA           GCCGCGCG GATTGA CGCGCTAC            GGCTGGCGCAAACAG  51 83
SM2011_a1016  563197 ..  563223 -  -3.7  -3.88498   CGGCGATAGAGGAAA        TGACGACGACGC TGAA GCACC-TCGCCA         GCCACTGCCATGGGG  58 143
SM2011_a1010  559018 ..  559041 - -18.2  -3.55444   GCGGCAGCCGCTAAA          CACGCGCCGT CGCA ACGGCGCGTG           TTATTGGTGAACAAT 100 111
SM2011_a1008  557741 ..  557762 -  -3.6  -3.88787   TGACACTTCGACAAA           GTGCCCGC TCTCTC GCCGACAC            TGTAAATGTCGGCCC  56 468
SM2011_a1004  555600 ..  555623 -  -2.3  -4.10007   ACAATCGGCCGAAAA          TCGCCAGAT TGCACC AGCTGGCGC           GGAAGAGTAGTTGCC  57 469
SM2011_a0995  550738 ..  550760 -    -7  -3.35867   CGAACTCCTAATTAA           CGCGTTTCCA ATT TGGAAACAAG           CGTGAAGTTCCCAAT  58 182
SM2011_a6238 NONE
SM2011_a5007  549683 ..  549701 -    -3  -4.42386   GCCTCAGGTAGAAAA             GCCGCG GTTCCCT CGCGGA             GCTCTCCGGCACGCC  67 336
SM2011_a0988 NONE
SM2011_a0985  546889 ..  546921 -  -4.6  -3.59979   GCGCCTGATCGGAAA      GCCCTCGCAAGTTC AGTCG GCGCTGGCGTGGGC      GCTGCATCGAATGCT  53 297
SM2011_a6237 NONE
       ntrR2  545900 ..  545923 -  -5.2  -3.24232   GTGGCGTGAAAGATA          GGTTCGCG ATCGCCGG CGCGACCC           CCACCAAGGCGATCT  51 235
SM2011_a0977  544153 ..  544179 -  -5.1  -2.88544   GGCCAGGGCGACATA         GACGGCTTTGT TGCGT ACGAAGCCCTC         GTCTCTGATCTTGAC  46 457
SM2011_a0967 NONE
SM2011_a0964  539114 ..  539127 -  -6.7  -2.78596   CACCCTCTGAGCAGA               TGACC GCTA GGTCA                AGCGGTCTCTGAGCC  49 18
SM2011_a0953 NONE
SM2011_a0952 NONE
SM2011_a0951 NONE
SM2011_a0950  529390 ..  529418 - -10.2  -2.98282   AGCAACGAGGACATA       CGCGGACGCTGCG GGTT CACTGCG-CCGCG        TCGCCTCCATGCATC  64 57
SM2011_a0937  520387 ..  520400 -  -2.3  -3.33261   CGTGAAGCGGCACAA               GAACG ATGG CGCCC                ATGCACTTTCACTCC  46 54
        traC NONE
        traD NONE
        traG  512376 ..  512422 -  -4.5  -3.54489   TGAACGCGAAACCAA CG-CGACGAGCCGAAGCGATG CTTTCCC CAA-GCTTCGGTTCATCGTCG GGCTTCCGTTCGTGA  53 351
SM2011_a0907 NONE
SM2011_a0882  491655 ..  491686 -  -2.2  -4.79352   CTATGGATAAGAAAA      GATGGGCTCGCAGCC GGT AGCT-CGAACCCCTG      CTAAAAAACTGGCGC  70 522
        nodM NONE
        nolF  488516 ..  488528 -  -4.1  -3.15249   GATACGTGTGAGGAA                CATCC CTC AGATG                CCCTCGATGATCACG  45 19
        nolG NONE
        nodN  484833 ..  484847 -  -8.5   -3.1355   GCCAGCGATACTCAA               CCGGC TTTTG GCCGG               TCCTTGGGATTGAAC  60 7
        nodA  480608 ..  480623 -  -4.6  -2.54896   CGTGTATGTAATCGA              GGTGCT TCAT AGCTCC               GATCCGTTCCGTTCA  43 16
        nodB NONE
        nodC NONE
        nodI NONE
        nodJ  476612 ..  476622 -  -2.4  -3.64487   GCAGATGGCGAAGAA                 CTCG TCG CGCG                 CGTAAAGGCGAATCT  51 205
        nodH  467873 ..  467883 -  -3.2   -3.1505   ATCAGTCGTTAGCAA                 GCTC AAA GAAC                 CTCGCGTAAGGTCCA  43 1
SM2011_a0850  466889 ..  466901 -  -6.9  -3.14132   TGCTGGTTGTACCAA                GCCGC GTG GCGAC                CCGTGTCGCCGCCAT  53 484
       nodD3  462393 ..  462406 -  -2.3  -4.22375   AGCGAAGAGAAACAA               TGCCG CATC CGTCA                ATGTCTAACGCCCAA  59 30
        fixA NONE
        fixB NONE
        fixC NONE
        fixX  447202 ..  447220 -  -4.5  -2.94912   TTGTGAAGGTACAGA             CAGGGCA CTAAC TCCCCTG             AACGAGTTGCGATGG  46 205
        nifA  445518 ..  445539 -  -5.7  -4.45517   AAAGGACGGAGAAAA           GAGGCGACG CTCG CGACGCCTT            TATCTCACCGGCAGC  72 41
        nifB NONE
        fdxN  443614 ..  443626 -  -3.4  -3.37537   GACCTTAAAATCGAA                GTTC TGTCG GAAC                ATATTGGTAGGAGCT  47 40
        fixU  443148 ..  443179 -    -8   -2.7641   AAAAACTCGGCAAAT      GCAACCGCG-TGAAG GAA CCTGAGCGCGGTCGC      TCGATGATGGGAACC  54 93
SM2011_a0776  422612 ..  422646 -  -7.9  -3.32769   CCGCCAAAGGATCAA    GGCTCTCGAC-TATCC TCTC GAACACGTCGTGAGCC     GACGATACAACGTGT  61 481
SM2011_a0775  422132 ..  422169 -    -7  -2.75844   CTGCGCAGCCGAAAT   GGCTCCGCAC-CGCAAC TCGCC GCTACGAGTGCGCAACC   CGAAACGGCTGGAGC  51 226
SM2011_a6189  407383 ..  407399 -    -3  -3.60792   GCGGGAAGTTCGAAA             GC-GATC TCCT GATCTGC              AATTTGCATGCAACG  49 267
SM2011_a0750  402804 ..  402817 -  -3.1  -2.78816   CGAGTCTTCATGACA               GC-GAC GCC GTCCGC               ATCAGGGCAGATGCC  41 48
SM2011_a5003  402162 ..  402176 -  -5.6  -3.91032   GAACTATGCCAGAAA               GCGATC CGA GCTCGC               ACGCGCGACCGGCCT  62 331
      groES2  400367 ..  400383 -  -3.6  -2.71712   TCCTGGTTTCGAAAT              TCCGGA ACTGG TCCGGT              TTCAAATTGCGGAAG  43 60
      groEL2  398647 ..  398666 -   -15  -5.24129   GTTGCGTACAAAAAA            GGGCGGCT CGAG AGCCGCCC             GTCAGATCCGGATGG 100 64
SM2011_a0742  397777 ..  397800 -  -3.2  -3.40403   GGGGGCGTAGCACAA          GATTGC-GC ATTGGCA GCTGCAATC          CCATCGAAGGACGGA  47 70
SM2011_a0739  396555 ..  396569 -    -7  -3.12327   TCCCTACACGCAATA               CCGGTC AAT GCCCGG               GACGGCAAGAGGTCT  54 72
       cspA6  395963 ..  395989 - -10.2  -3.36749   GACGCGGAAGACGAA         TACGCCCTCA TCAATCC TGAGGGCGCA         GAGGACGAGCGGCAG  66 348
       dgoK2  380390 ..  380402 -  -5.5  -3.53444   GGAGCGGGCCCCAAA                GGTAG ATG CCACC                GCGGGCGTCATCCCT  55 250
SM2011_a0690 NONE
SM2011_a0689 NONE
SM2011_a0687  371355 ..  371400 -  -3.2  -3.76402   AGGCGACGGAGCAAA CCGCGCGCATGCATGCTCTAC CGTGT GCAGAGCATGC-CACTCGATG GATCCTCTCGCATTG  52 76
SM2011_a0684  369541 ..  369568 -  -6.2  -3.44051   TCGGGATGAGGAGAA        GCGCACGCGG TTCTCCGC CCGCATTCGC         TCTAAGTCATCGCTA  56 69
SM2011_a0683  368519 ..  368536 -  -3.4  -3.25823   CGGCGGCGACACCAA             CGACGCC GACAG GGC-TCG             TGCTCACTCTGCCCA  45 29
SM2011_a0682 NONE
SM2011_a0680  363709 ..  363722 -  -2.3  -3.01712   TCCTCCCTCGGAAGA               GGCGA TTAC TCGCG                CACGGCGTAGGTGTA  40 17
SM2011_a0678 NONE
SM2011_a0677 NONE
SM2011_a0675 NONE
SM2011_a0674  359602 ..  359612 -  -2.4  -3.78329   GCCGAGCAATGGAAA                 CGGG CGC CGCG                 GGAATGGGTCGAGGC  52 79
SM2011_a0665  353242 ..  353252 -  -6.8  -3.12327   TTGCTATATTGAACA                 CGAC TAC GTCG                 CCGCCGAACGGTGGG  53 310
SM2011_a0663  351341 ..  351360 -  -5.7  -3.64822   ATGCCTTCAGTCAAA            TGGACCCG TCCGC CGGG-CCA            AGCGCTATTGCAATC  58 1
SM2011_a0662  350113 ..  350147 -  -7.8  -3.05935   ACAGCTCCGATGGAA     CGGCTGGCCAACCG GGCAAAT CAGCTGACCAGCCC     AGCAAATACGTACCC  54 464
SM2011_a0656  347627 ..  347642 -  -4.6  -3.80733   TTGATCGGAGAAGAA              CTCCGG CCGC CCCGAG               CGTTACTCAACAGGA  59 292
SM2011_a5027  346523 ..  346546 - -12.4  -3.22298   GCTACGGAGCAGGAA          GGCGGCGCCGC GCC GCGG-GCCACC          GCTCCCGCCGGAAAC  75 389
SM2011_a6152  341645 ..  341667 -  -2.1  -4.07568   TCGCCTCGGCGAAAA          CA-CCAG-TCT GGA AGAACTGGATG          TGACTGTCACGGTCA  57 165
SM2011_a0633 NONE
SM2011_a0630 NONE
SM2011_a0629  337128 ..  337153 -  -3.9  -2.85668   GACCGGTAGACTAGA         CCGGC-TCGACG ATG CGTCGCTGCCAA         GCGCCCAGCATCTTA  43 266
SM2011_a0601  319150 ..  319162 -  -6.9  -3.68036   AACTAGCCGAAAACA                GAGCG GCG CGCCC                GTAGCATCAGGGAGG  63 78
SM2011_a0599 NONE
SM2011_a6138  317222 ..  317244 - -14.9  -3.06133   TAATCTGGTACGCAA           GCCGGCGTT GCACA AACGCCGGC           TTTGAACCCTCAAGA  85 259
        nrtA  311822 ..  311847 - -13.2  -3.17075   GGGGGGTTAATCGAA         GGCGGCCGGG AAGGGA CCCGGCTGCC          GATGCGGCATCAGGC  76 35
        nrtB NONE
        nrtC  309901 ..  309911 -  -6.8  -3.05596   GATGGCTCCATCGAA                 GCAC GCG GTGC                 GGCTGGAACAGTCCG  54 201
SM2011_a0574  304738 ..  304775 -  -6.3  -2.50307   GAAATGCGGACGAAG   CTGCCATTCGAGCGAGGT GTT ACCGTGCT-GAATGGAAG   GCCAATCTGGCATGT  48 40
       cyaF4  301432 ..  301463 -   -10  -2.61264   CGTTTGAGTGACAAC      GGCTGCCGCGACAC TTCT GCGGCACGGCAGGC       CTGTTTGTCAGGCCG  62 101
SM2011_a0557  294993 ..  295015 - -11.4  -2.52896   TGAGGCGTGAACGGA           TCGTGCAACA ACT TGTTGCACAA           ACACCTAGGGCCATA  65 259
SM2011_a0548 NONE
SM2011_a0545  290346 ..  290373 -  -3.5   -3.9461   GCGGCGGAACAATAA       CGTGTCAAGCCGC GCGT GCGGCTC-ACA-G        ATGGCGACGCAGGAC  56 512
SM2011_a5025  286286 ..  286296 -  -4.6  -3.01924   GACGGTCTCGCAACA                 GGCA GCG CGCC                 AGGCGATCGCCGAAC  47 310
SM2011_a0498  270659 ..  270678 -  -2.7  -4.11216   TGGCCATGCTGAAAA            CGGCCCG GCATCT CATGCCG             TCAAATGCCGGAGGT  59 66
SM2011_a0495 NONE
SM2011_a0493  268227 ..  268238 -  -2.2  -3.12668   GATGCCGATATTCAA                GACGG CCT CCG-C                TGAATATGTCTGTTC  41 10
SM2011_a0492 NONE
SM2011_a0489 NONE
SM2011_a0486 NONE
       thrC2 NONE
SM2011_a0483  263100 ..  263116 -  -5.1  -3.13403   TCGTGCCGATGAACA              CCTCC TGCAGGG GGAGG              GCGCACGCATCCTGA  47 77
SM2011_a0478  260380 ..  260406 - -15.1  -2.69719   TGGAGAAACATCAAC         TGGCCGTGCGG CTGCC CCGCACGGCCT         CAGAAAAGCCCGCCC  81 45
       cyaI2  248106 ..  248118 -  -5.5  -2.76696   CGCCCCGCTAACAAT                GTCAC ATC GCGAC                GAGTTTGCCTAGGCG  47 14
SM2011_a0462  245912 ..  245922 -  -2.4  -3.78329   GCCGAGCAATGGAAA                 CGGG CGC CGCG                 GGAATGGGTCGAGGC  52 154
SM2011_a0448  239665 ..  239696 - -16.6  -2.87132   GCTTCCCGTGAGACA      TCGGTGAAGGCGCC CATC GGCGCCGTCACCAA       TCTTTCGATGCCGTT  88 19
SM2011_a0445 NONE
SM2011_a0444  236273 ..  236293 -  -8.1  -2.72661   CATCATCGTCAACGA            GGCTCGGCG TCT CGGCGTGCC            GAACGACAAGCTCGT  54 275
SM2011_a0436  233784 ..  233796 -  -2.6  -3.53012   GGTTGCGGGGCTAAA                GCCG GTGTT CAGC                CAAGGCGCTATCGAT  47 142
SM2011_a0431 NONE
SM2011_a0429  230963 ..  230983 -  -8.9  -2.92513   ACAAGTTCAAGGAGA            GCGACGACG TCT CGCGGTCGC            TGTCGGCCGATGCCC  59 134
SM2011_a0426 NONE
SM2011_a0424  228751 ..  228771 -  -3.1  -2.81966   GGAAATCGGAGCATA            TCGACAGCG GCA CGCAGCAGA            GCGACGCGACGAGGC  40 209
SM2011_a6088  223860 ..  223884 -  -4.1  -3.05384   GGGCTCCTGACTGAA          CGCCTCTCCGA GCG TCCGAGGGGCC          CTTCTAGCTCACCGA  45 133
SM2011_a0412 NONE
SM2011_a6086  222730 ..  222742 - -10.5  -2.86124   TGGATCCAAAGATGA                CCGGG AAA CCCGG                GAAGTGGTCGCCGGC  63 272
       hisC3  208623 ..  208645 -  -4.8  -3.86346   CGAGTTCTGGACAAA           CGAGCCCAAA CGC TTCAGGTTCG           ACCCCATCAAATGCC  59 65
SM2011_a0384  207145 ..  207165 -  -3.3  -3.14132   CCGCTGCTGCATTAA           CGACTCAG TTGTGT CTG-GTCG            AAGAGGAGTAAATGT  43 111
SM2011_a0372  198456 ..  198486 -  -3.3   -3.1364   GAGCGAACCAGCGAA      GTCGTTTCGGGC GTGGCGCT GCCCGTAAC-AC       AATTGTTTTTCCACG  43 309
SM2011_a0360 NONE
SM2011_a0359 NONE
SM2011_a0357 NONE
SM2011_a6070  192432 ..  192449 -  -2.7  -3.65351   GCATGTTCATCCAAA             TTCCG GCGTTGTG CGGAA              ATACTTGGCGAGGCG  51 238
SM2011_a0352  189471 ..  189481 -  -2.4  -2.75844   GTGGTCATGCGAAAT                 CTCC TGT GGGG                 TGGTTGGATGGATCA  39 43
SM2011_a0349  188830 ..  188859 -   -15  -3.08327   ATGAAATCGTCAAGA       CGGCTCGCCGGT CTGAAC ACAGGCGAGCCG        CGTAACTTCAGTCTT  85 33
SM2011_a0346 NONE
SM2011_a0343  186332 ..  186361 -    -5  -4.10161   GATCACCGGCCAAAA      TCC--GGCATCGGC TCCG GCCGTTGCCCAGGA       ATTGCTGAAGCGCTT  64 232
       wrbA2 NONE
SM2011_a0339 NONE
SM2011_a0337 NONE
SM2011_a0335  183198 ..  183219 - -10.1  -5.30616   GGAGGCAAAGAAAAA           CCCGCGC TTTCGAGG GCGCGGG            TCCGACTGGAGGGTC 100 47
SM2011_a0333 NONE
SM2011_a5017  182583 ..  182602 -   -15  -3.42768   ATGAAAACGCGAGAA            GCCCGGAC CATC GTCCGGGC             TTTTCCTTTGATCGG  87 50
SM2011_a0310  173541 ..  173581 -  -6.8  -3.98661   GATATCGACCAGAAA GCCGCCGTGGCTGCACGCA ACAC TGCGTTCAAGCA-GGCGGT  GGAAGGCAAATATCT  67 382
SM2011_a0307  171414 ..  171439 -  -5.5  -3.72968   ATGATGAGATTTAAA         CTCCACTTGAAT GAA ATTCATGTGG-G         ATGGACGGTAGATAC  58 267
SM2011_a0306  169631 ..  169658 - -15.6  -4.14739   CCATGGAGGGGAAAA        CGGCCCGCAACA ATCA CGTTGCGAGCCG         AGGGTGCGGCAGACG 100 67
SM2011_a0302 NONE
SM2011_a0301 NONE
SM2011_a0300 NONE
SM2011_a0299 NONE
SM2011_a0298  162532 ..  162549 -  -5.5  -3.53012   GTTGCTTCTCGCAAA             CACCAAC GGCT GCCGGTG              AAGCGGTCGAACACG  55 182
SM2011_a0293  161732 ..  161742 -  -6.8  -3.06796   TGCCAGGCCACTGAA                 CGAG GGC CTCG                 ATGACGATAGGCCAT  54 221
SM2011_a0288 NONE
SM2011_a0287 NONE
SM2011_a0286 NONE
SM2011_a0285  158430 ..  158448 -  -5.2   -3.4678   ATGCGCAGAGGACAA             GACCGGAC CGT GTCCCATC             CTGGCTTCCTTTGGA  53 407
SM2011_a0280  157123 ..  157138 -  -3.2  -3.60098   ATGGTTTATGGCAAA              CCGCGCC GAT AG-GCGG              AACGCATCGTCCTTC  49 109
SM2011_a0279  156185 ..  156204 -  -4.9  -3.86897   TGCACCCCTTACAAA            GCTCCAG CGTTTT CAGGAGC             GGTTGGCTCTTCAAT  59 286
SM2011_a5016  155772 ..  155810 -  -4.6  -3.19389   CAAGCCAGGGACGAA  GCGACGACGCAGGT-GCA GCCCT TGCGACCT-CGGCGTTGC  TGGCGCAAGATGCCG  49 70
SM2011_a0277  155080 ..  155107 -  -2.7  -3.13403   TGCTCGGCACGAAGA        TCACCCACA CGTAATGGAT TGAGGGTGA         GATCGACGACGGCGT  41 181
SM2011_a0265 NONE
SM2011_a0263 NONE
       gabD3 NONE
SM2011_a0259  145420 ..  145439 -  -7.8   -2.7535   TGGCCCAACACACCA            GCGGCGAA CTTC TTCGGCGC             CCGCCTTTGCCGCCG  54 73
SM2011_a0257  142956 ..  142984 -  -8.1  -3.05022   CTTTCGACAGATACA        GAGCGCGAAGATA GTT TACCATCGCGGTC        CAGCGTGCCCAATCG  57 179
SM2011_a0241 NONE
SM2011_a0237 NONE
SM2011_a0235  130642 ..  130659 - -14.1  -4.66537   CCGCTGAATACAAAA             GGGCGGC CGGA GCCGCCC              TTCCATCATCGGGGA 100 137
        otsA  128738 ..  128750 -  -9.1  -2.62184   CCGTCGGCGAGAGGA                CCGAG ATC CTCGG                AGAGGACGGCTGGCC  56 240
SM2011_a0223  122045 ..  122073 -  -8.7  -3.06796   CGCGAGGCGATCGAA        GTCGCGGTGGCGC GCC GGGCCAGCGAGAC        ATTCGATAGCTGGAC  57 469
SM2011_a0220  120034 ..  120077 - -13.1   -3.1855   GGTCGCAAGACCCAA GTCTCGGCTGGCGGGCTCC GACCAA AGATCACGCCAGCCGAGAT ATTCCTCCTCCTGAC  79 57
SM2011_a0218 NONE
SM2011_a0217 NONE
SM2011_a0216 NONE
        kduI  116167 ..  116182 -  -3.2  -2.90496   CTGCCGTGGAAATCA              CAGGAC CTCA GTCTTG               CAAGGCACCAAACCG  42 181
SM2011_a0211  115893 ..  115911 -  -2.4  -4.17048   CGGCGGGCAAAACAA            CGAG-GG CCGCAC CCACTCG             TGCGGGAAGCACGGT  59 40
SM2011_a0210  115004 ..  115024 -  -6.7  -3.62775   ACCAGCCGGCAAGAA            TGCCGGCGC TGG GCGGCGCCA            GTGCGGATCCACTTC  59 518
SM2011_a0203  110906 ..  110941 - -16.8  -3.62046   TCATCTGCTCAACAA    GACTGCCGCGCGGTCA TCTA CGGCCACGCGGCAGCC     ACCGGGAGATTTCAC  91 37
SM2011_a0199 NONE
SM2011_a0198 NONE
SM2011_a0197 NONE
SM2011_a0196  106346 ..  106366 -  -4.8  -4.81249   GCTGAAACGGAAAAA           TG-TCAACC GATT GGTTGAGCA            TTACCGGTTCGCATT  76 273
SM2011_a0193 NONE
SM2011_a0191  105238 ..  105291 -  -4.4  -2.71144   GATCCGCCTCAATGA CCTCTCCGGAAGCCGCTGGCCGCCC ATCCG GAGCAACCAGCCGC-CATGGAGAGC CCCGCGACCAATCGC  44 198
       cspA7  100032 ..  100064 - -25.1  -2.91383   AGCCTCATGGACAGA      GCGCCTCAGTGTTTC AAT GAAACACTGAGGCGC      TCTGGTCTTGCCGGA 100 132
SM2011_a0179   97648 ..   97662 -  -4.2  -5.09895   CACGTAGTTAAAAAA               CCAAGA CAG TCCCGG               GGTCCCGAGCAGCTG  81 429
SM2011_a0175   95275 ..   95291 -  -9.3  -3.07113   CAGCAGGCGACCGAA              GCCGCCG ACA CGGCCGC              TGCCGCAGTTTTCCA  64 189
SM2011_a0171   92856 ..   92898 -  -6.3  -3.41693   GCGAGCACGAATGAA CCGCCTGACAAACCACTGCAG CGG CTGC-GCGATTTG-CTGGAGG GGCATATGACCCCGG  57 213
SM2011_a0162   88718 ..   88734 -  -2.1  -3.73224   TGACCTTGTAGCAAA              CCTCTCG AAC CGTGAGC              GGCGCAGCGGCCGCC  51 233
        matP   86915 ..   86934 - -10.6  -3.17075   TGCGCTGGAAGGGAA            TGGCGCGC CGGA GCGCGCCG             TTCTGCCGGTCCGCC  66 41
        matQ NONE
SM2011_a6038 NONE
       matMA NONE
        matB   81554 ..   81567 -  -4.5  -4.34737   TCATCAAGGAAGAAA               GTGCCG AAA CGGC-C               TCGGAAACACTGTTG  66 500
SM2011_a0148   80470 ..   80504 - -31.6  -3.31322   TTGAAGGTGCGACAA     GAGAGCGGGGGCCGGA CAT TCCGGCCCCCGCTCTC     TTGTCTGATCGGACC 100 150
SM2011_a0146   79707 ..   79721 -  -5.6  -2.57683   ACATTCCGTGACAAT               GCGCAG GCG CTGTGC               CGCGAGTTCGAGCTG  46 268
SM2011_a0142   76955 ..   76971 -  -9.3  -4.63218   CCGCCCGCAAGAAAA              GCCGGGC ATT GCCCCGC              AACGCTGCCAGTATC  87 145
SM2011_a6036 NONE
SM2011_a0139   75881 ..   75896 -  -2.5  -4.34482   TCTGCGAAAAAAACA              TCACG GCACTA CGCGA               GTTCGGCGTCAAGTT  62 453
SM2011_a5002 NONE
SM2011_a0134   70625 ..   70652 - -14.8  -4.08853   CTGAAGATCAAATAA        GCACGCCCCAAG GGGA CATGGGGCGCGC         CACCATTTGAGTCGA 100 108
      groES3   67858 ..   67874 -  -2.1  -3.48276   TCGGGCTTGAGATAA              GGGTCGG GAT CCGACGG              ATCAGGCAGCATTGG  47 27
      groEL3 NONE
SM2011_a0123 NONE
SM2011_a0121   65438 ..   65462 -   -15  -2.50994   TTGAATTTGATGAAG          CTGGCCCGCC ATAGG GGCGGGCCAA          TGAGAAACGGCCGAG  81 56
SM2011_a6027   64842 ..   64866 -  -6.4  -3.53563   ATATTTTTTCGGAAA         GCCG-GACAGC TCAC GCTTTCTCGGC          GGGTCGGATGTAGGC  57 419
SM2011_a0112   58753 ..   58765 -  -3.3  -4.11484   TGCAACGCGTGAAAA                GCCGA GGT TCGGT                GCGCGCCCACCGGCT  60 65
SM2011_a0097   49931 ..   49968 -    -4  -3.02144   CGACCCGGTGGAACA   TGAGCCTGCCACAGCGT TCACC ACGCAGGAGC-GGCTCG   CCGACGGCCACATCG  45 197
SM2011_a0060 NONE
SM2011_a0059 NONE
SM2011_a0058 NONE
SM2011_a0056   27799 ..   27812 -  -2.4  -3.62354   TGTGGAAATCAAATA               TCTC TGCCTC GAGA                TTCGAGCGGGGCGCA  49 396
         cah   25819 ..   25834 -  -4.7  -2.80935   ACCCGACCTACGACA              GCAAG TACATG CTTGC               CCGTGACCGTTGATC  44 39
SM2011_a0044   25421 ..   25434 -  -3.8  -3.24735   CAGTCAAAGACTCAA               GCGA ACCGCA TCGC                CGATCTTTCGCGCGC  47 8
SM2011_a0039 NONE
SM2011_a0034   19461 ..   19473 -  -4.1  -2.90992   AACCCCTTCAAAGCA                GGAAA TCG CTTCC                GGAAAGAGCCGACAG  44 5
SM2011_a0031   18979 ..   18991 -  -3.3  -3.16881   GATTGACGCGAGTAA                CACGG CCG CCGCA                ATCAGCCCTGGGATC  43 243
        selD   17831 ..   17857 -  -5.9  -3.72324   CATCGCCACCAACAA        TGTTCG-GGAAC GCTT GTTCCACGAGCA         GTCGATATCAGGAAA  58 33
SM2011_a0026 NONE
SM2011_a0025 NONE
SM2011_a0021 NONE
SM2011_a5000   12227 ..   12258 -  -6.4  -3.98842   GAGAATACTTACAAA      GCGCG-CTACGATCG TTC CGGGCGTCGTCGCGC      TTATGAAAATTGTAG  66 26
