LOCUS       NC_019146               2690 bp    DNA     circular BCT 03-NOV-2012
DEFINITION  Staphylococcus aureus plasmid pUR5425, complete sequence.
ACCESSION   NC_019146
VERSION     NC_019146.1  GI:410655987
DBLINK      Project: 178791
            BioProject: PRJNA178791
KEYWORDS    .
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Firmicutes; Bacillales; Staphylococcus.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Lozano,C., Aspiroz,C., Saenz,Y., Ruiz-Garcia,M., Royo,G.,
            Gomez-Sanz,E., Gomez,P., Zarazaga,M. and Torres,C.
  TITLE     Genetic environment and localization of lnu(A) and lnu(B) genes of
            MRSA and other staphylococci from animal and human origin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2690)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-NOV-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2690)
  AUTHORS   Lozano,C., Aspiroz,C., Saenz,Y., Ruiz-Garcia,M., Royo,G.,
            Gomez-Sanz,E., Gomez,P., Zarazaga,M. and Torres,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2012) Area de Bioquimica y Biologia Molecular,
            University of La Rioja, Madre de Dios, 51, Logrono, La Rioja 26006,
            Spain
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to JQ861958.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="C5425"
                     /isolation_source="clinical sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pUR5425"
                     /country="Spain"
     gene            92..1096
                     /gene="rep"
                     /locus_tag="D646_p7001"
                     /db_xref="GeneID:13913686"
     CDS             92..1096
                     /gene="rep"
                     /locus_tag="D646_p7001"
                     /function="essential for plasmid replication"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="YP_006958123.1"
                     /db_xref="GI:410655988"
                     /db_xref="GeneID:13913686"
                     /translation="MQYNTTKYIDENQDNKTLKDMTKSGKQRPWREKKIDNVSYADIL
                     EILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQR
                     VIEEVVKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTESFRRLFKYKKVSKNLIGFM
                     RSTEVTVNKNDGSYNQHMHVLLCVENSYFKNKANYITQEEWISLWQKALQVNYRPVAN
                     IKAIKPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSY
                     GGLLKQKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR
                     "
     rep_origin      1903..2058
                     /note="single-strand origin (sso) of replication of
                     plasmids via the rolling-circle mechanism"
     misc_recomb     1903..1914
                     /note="recombination site B"
     gene            complement(2077..2562)
                     /gene="lnu(A)"
                     /locus_tag="D646_p7002"
                     /db_xref="GeneID:13913685"
     CDS             complement(2077..2562)
                     /gene="lnu(A)"
                     /locus_tag="D646_p7002"
                     /function="confers lincosamide resistance"
                     /codon_start=1
                     /transl_table=11
                     /product="lincosamide nucleotidyltransferase"
                     /protein_id="YP_006958124.1"
                     /db_xref="GI:410655989"
                     /db_xref="GeneID:13913685"
                     /translation="MKNNNVTEKDLFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREH
                     RDIDIDFDAQHTQKVIQKLEDIGYKIEVDWMPSRMELKHEEYGYLDIHPINLNDDGSI
                     TQANPEGGNYVFQNDWFSETNYKGRKIPCISKEAQLLFHSGYDLTEKDHFDIKNLKSI
                     T"
     rep_origin      2608..2624
                     /note="double-strand origin (dso) of replication of
                     plasmids via the rolling-circle mechanism"
ORIGIN      
        1 tttttggagt tgaaaagaaa atttgacatg aaaaaacccc agttatatta ttaaggtgtc
       61 gaatcttaaa taaaactggg gggcttttta tatgcaatat aatactacta aatatattga
      121 cgaaaatcaa gataacaaaa cattaaaaga tatgacgaaa agtgggaagc aacgcccatg
      181 gagagaaaag aaaattgata atgtaagtta tgcagacata ctggaaattt taaaaattaa
      241 aaaggctttt aacgtaaaac aatgtggtaa cgtcttagag ttcaagccga ctgatgaagg
      301 ttatttgaag ttacataaga catggttttg taaatcaaaa ttatgtccag tttgtaattg
      361 gaggcgtgct atgaaaaata gttatcaagc tcaaagagtg attgaagaag tggttaagga
      421 aaaaccgaaa gcacgttggt tatttctaac actttcaaca aaaaatgcta tagatgggga
      481 tactttagaa caaagtttga aacacttaac tgaatcattt agaagattat ttaaatataa
      541 aaaagttagt aaaaatttaa ttggttttat gcgttcaaca gaagtaacag ttaataaaaa
      601 tgacggcagt tataatcaac atatgcatgt tttgttatgt gttgaaaata gttattttaa
      661 gaataaagct aattatataa ctcaagaaga atggattagt ttatggcaaa aagcattaca
      721 agtgaattat cggccagtag caaatattaa agcgatcaaa ccaaatcaaa aaggcgataa
      781 agatattcaa gcagctatca aagaaacctc taaatattcg gttaagtcat ctgatttttt
      841 aactgatgat gatgaaagaa atcaagaaat cgtgaatgat ttggaaaaag gtttataccg
      901 aaaacgtatg ttgagttatg gtggattgct taaacaaaaa cataagattt taaatttaga
      961 cgatgctgaa gatggtaatt tgattaatac aagtgatgaa gataaaacaa ctgacgaaga
     1021 agaaaaagca cattcaatta cggcaatttg gaattttgaa aaacaaaatt attacttaaa
     1081 agatttgaaa cgttagctta aaagctagcg ttttttatgt atttttgccc ctgcgggaac
     1141 tatagcgttc aaccagcatg gttgcccagt ttttatgcca atttttaaat ttgcatgtaa
     1201 atgggcagtg tctcaaaaat tcgacactgg ttttgctcaa attttaattg gtgtaattaa
     1261 aatatattta tttggctcat atttgcgttt taagagctta tatacgtttt taggtataaa
     1321 actatatgat ttacccctaa ttctttaaaa tgccccctta aaattcaaaa taagggcata
     1381 aaaaataaaa gctaccccaa aattgagata gcttttttct ttcgtacggt ctgtttattt
     1441 ttctttcgac gccgtatcgt cgatggaatt caaaaaagtt atgggctata aatctacatc
     1501 actttttcaa gaatgtagta gcaatattca agacaaatta atttttataa ctgctcggaa
     1561 tatctcaagc cgtttcttta attttgaaat aaaaaaatcg acgaaggtcg attatggttt
     1621 ttacacgcgt tcttttagaa cgcataagtg cgcccttacg ggatttaact agattataac
     1681 gacgaaaatc agacctgtaa agcgataact attgtgctaa agtttgctaa aaaggagttt
     1741 tgaagttgaa aaaaacagaa cgtaatttat tttctatttt cttatcttta ggaagtcttt
     1801 ttgctatctt tagtggtttc tttattttgg gcattggaat gttaattggt ggagcaactt
     1861 tattagctaa aagtatttct gaagaataaa agcgttgacg catttatgcc gagaaaattt
     1921 attgtgcgtt gagaagaacc cttaactaaa cttgcagacg aatgtcggca tagcgtgagc
     1981 tattaagccg accattcgac aagttttggg attgttaagg gttccgaggc tcaacgtcaa
     2041 taaagcaatt ggaataaagc aattatgtta ttgattttat gttattgatt ttaaattttt
     2101 tatatcaaaa tggtcttttt ctgttaaatc ataaccagaa tgaaaaagaa gttgagcttc
     2161 ttttgaaata catggtattt ttcgaccttt gtaattagtt tctgaaaacc agtcattttg
     2221 gaaaacataa ttaccacctt ctgggtttgc ttgggtaatt gatccatcat catttagatt
     2281 tataggatga atatctaaat acccatattc ttcatgctta agttccatac gtgaaggcat
     2341 ccaatcaact tctattttgt atccgatatc ttctaatttt tgtataactt tttgagtgtg
     2401 ttgagcgtca aaatctatat ctatatctct gtgttctctt tgttgttttc cagttaatac
     2461 atctaccccc cagccaccat ctaaccaata agttactttc atgtgttcaa ataaatctaa
     2521 aatataaaat aaatcttttt ctgttacatt attatttttc attttatccc tcctaacttg
     2581 ggaatttgaa acgagttgaa aacgagtttc ttcttgtctt gatactatat agaaataacg
     2641 ttcttcttta aaactatggt ttgtcgttga tatgacagtg tttttatgta
//
