        dnaA NONE
        dnaN    3083 ..    3108 + -17.7  -4.41817   GAGAGTATTATGAAA         GGTTCGGTCAC TTAT GTGACCGAACC          TTTTCGATTATTTTA 100 232
   Spaf_0004    4926 ..    4950 +  -7.2  -4.55826   GCTAAAAAAATGTAA          AGGTTGGAAA AAATA TTTCCAACCC          TTTTAGTGTTTTGAA  81 45
       spoVC NONE
   Spaf_0006    9037 ..    9048 +  -2.2  -3.21225   ACAAGAAAAAGAAGA                GGAC TACA GTTC                 TTAGCTCATTTTTCG  43 10
   Spaf_0007 NONE
       divIC NONE
   Spaf_0009 NONE
   Spaf_0010 NONE
        mesJ NONE
   Spaf_0012 NONE
        ftsH   15278 ..   15294 +  -8.7  -5.48623   CGGACTATTGATAAA              CTGTCAC CAA GTGGCAG              TTTTTCTTTGTATTT 100 370
       comX1 NONE
   Spaf_0015   16635 ..   16649 +    -5  -3.37464   TGGGGGGAAAGACAG               TAGGAG AAC CTTCTA               TTCTGACCTTGGTAG  55 23
   Spaf_0016   17005 ..   17020 +  -5.4  -3.54109   AAAAACTCACTTAAT              CAGAGG GACA CCTTTG               TTGTACTTGACTTGA  58 61
        mreC NONE
        mreD NONE
        gbpB   26532 ..   26555 + -10.4  -4.89393   ACTAAGAATAACATT          GAAGTAGAAC ATTA GTTCTGCTTC           TTTTTCTACCATTTG 100 36
   Spaf_0020   29310 ..   29329 +  -6.4  -5.00616   CTTAAAAATAATGAA            GAGGCTGG GGAA CTAGTCTC             TTTTTTAGGAAAGGA  82 36
   Spaf_0021   29546 ..   29567 +  -2.3  -4.22214   AAGAATGATAGTAAA           TATCATGGA ACGA TTCATGAAA            TTGTTTTGGATAGGT  56 80
        abpA   30506 ..   30533 + -13.6  -5.00616   TTAGCTCGAAACGAA        TATCACTGAGTC CTAG GGCTCAGTGATA         TTTTTTAGAGAAAAA 100 53
        srtB   31421 ..   31449 +  -8.4  -3.04691   CGTGGTCAACAATAA       TAACAA-AAAGGC TTCG GCCTTTTTTGTTA        TGTCTAGTATTTGTA  67 26
        patA NONE
        recO NONE
        plsX NONE
   Spaf_0028   34781 ..   34808 +   -10  -5.86465   CATTAATTGAAAAAG        GATCGTTCAGAG ATTA TTCTGAATGATC         TTTTTTTCTGTTCTT 100 35
        purC   35619 ..   35631 +  -2.7  -3.04398   TGGAGAAATTGCAGG                GATTG AAG TAATC                ATTTTGAAACGGAAA  43 15
        purL NONE
        purF   40846 ..   40864 +  -6.1  -3.02144   CTATGTAGAAAGTTT             GAAAGAA CATAC TTCTTTC             TATTAAGAGCAGTGC  56 1
        purM NONE
        purN   42856 ..   42870 +  -2.2  -2.79183   GCAAAATATCAAATA               TTTATT AGG AATAAG               TCTAATGGAGATGGG  41 210
        purH   44721 ..   44744 +  -7.4  -4.51699   GACATTAATCAAAAA          GGCACTCATT CAAC GATGAGCGCC           TTTTCTGCTGGTTAT  79 33
        purD   47432 ..   47453 +  -8.1  -3.57144   TCTGGTCGGGGGAAA           CTTTGAGACC TTA GG-CTCAAAG           TTTAGGAATGAAACC  72 226
        purE NONE
        purK NONE
   Spaf_0040 NONE
   Spaf_0041 NONE
   Spaf_0042   52287 ..   52305 +  -5.9  -2.78996   GTTTGCAGAACTGAA             CCCGAGC GGAAA GCTCGGA             ATTTAGATAAGCCTC  55 193
        purB   53963 ..   53993 + -14.2  -5.30155   TATGCGGTGTGATAA       GATCGAAAAAGTTC GGG GAACCTTTTCGATC       TTTTTTAATTCCTCG 100 298
        bgaC NONE
   Spaf_0046   57286 ..   57308 +    -2  -3.21124   ATTTTTAGGAGGAAA           TTGTCATGAT ACA ATGGTGGCAA           ATTTTACTACTTACT  43 47
   Spaf_0047 NONE
   Spaf_0048 NONE
   Spaf_0050   59439 ..   59466 + -12.1  -3.74347   GAGTAGGTTGGTATG        GGAGTCTGGGA GCATTA TCTCAGACTCC         TTTCCCATTTATCAA  93 35
        agaS NONE
        galM   61998 ..   62015 +  -8.4  -5.08178   AATCTCCCTATAAGA             GCCACC AAAATC GGTGGC              TTTTTCTATATCTCT 100 219
        ruvB NONE
   Spaf_0054   63862 ..   63884 +  -2.8  -5.28942   AAATAGAGAAACAGA           TCAGATTT GAAAAAG GAATCTGA           TTTTTCTTTAAAATG  74 35
   Spaf_0055 NONE
   Spaf_0056 NONE
   Spaf_0057   66727 ..   66752 +  -5.5  -5.52986   TTAAACAGAATAAAA         GCAACTTTTTA CTTG TGGAAGGTTGC          TTTTTTTAGTAAAAT  88 76
        adhE   69760 ..   69785 + -11.1  -4.75404   TGATGTTTATCAGCT         ACCCCCTACTC TTTC GAGTGGGGGGA          TTTTTGATGGGATTT 100 57
   Spaf_0059 NONE
   Spaf_0060 NONE
   Spaf_0061   71268 ..   71295 +  -7.8  -5.33405   ACAAGGTGATTGAAA        CATTCCTCTGGT AGAG ATAAGAGGAATG         TTTTTGTTTGCTCAA  95 28
   Spaf_0062   72518 ..   72542 + -12.2  -2.79912   ATAGTTTTTTTAGAC          GAGGCTGGGA AAAAG TCCTAGCCTC          TCAATTATTTTTGGA  84 62
   Spaf_0063   73197 ..   73222 + -11.3   -5.8096   AATCATCATGTCCTA         GATCTCTGAAA CTAG TTTCAGGGATC          TTTTTATTTTTTCTA 100 43
        nanE NONE
   Spaf_0065   75586 ..   75605 +    -5  -3.99444   TCTCTATTTGGAATG            GAACGAAG GGGT CTTCATTC             TTTCTGGATCTTCTT  61 109
   Spaf_0066 NONE
   Spaf_0067   77429 ..   77448 +  -2.1     -2.89   CGGTCAAAGGATAAG            TCGTCTG CTTGGA CAAACGA             TAGTTGTGTACAGAT  41 27
   Spaf_0068 NONE
   Spaf_0069 NONE
        nanA NONE
        nanK   80478 ..   80497 + -12.2  -4.90266   ACATGGAACATAAAA            CAAGTCGC GCTG GCGACTTG             TTTTTGATTCATCAA 100 28
   Spaf_0073 NONE
        ntpI NONE
        ntpK   84482 ..   84497 +  -2.4    -3.794   CTATTGACCCTACGC              GTCGGC TAAA GCCAGC               TTTGATGGATTCGCC  49 17
        ntpE NONE
        ntpC NONE
        ntpF NONE
   Spaf_0079 NONE
        ntpA NONE
        ntpB NONE
        ntpD   91240 ..   91270 +  -8.3  -5.02476   TTAAAAAATACAAGA       ACCTCATCGAGGA ACGGC TCCTGGATGAGGC       TTTTTTGCACCCTCT  95 253
   Spaf_0083   92621 ..   92643 +  -7.8  -5.71712   GGATAATAAAACTTC           GAACTAGG ACAAGTG CCTAGTTC           TTTTTTTGTATGCAC 100 35
   Spaf_0086   95982 ..   95995 +  -3.1  -5.64304   TGATCGAAAATCAGA               GCTCTC GTG GAG-GC               TTTTTTATTGTCTTG  84 77
   Spaf_0087 NONE
   Spaf_0088   97444 ..   97482 + -12.1  -5.08824   AATAAAAGTATTTCA  GACTGAAGAAAA--GTCCA TTT TGGACGATTTTCTTCAGTC  TTTTTTAAATAAAAA 100 117
   Spaf_0089  102785 ..  102807 + -12.8  -4.84527   AAAAGTTACAATCTG           GAGAGGACCA AAT TGGTTCTCTC           TTTTTGATGTATAAA 100 124
        ilvD  106971 ..  106996 + -13.3  -4.89393   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTACCATTTG 100 200
        pyrP NONE
   Spaf_0097  110511 ..  110539 +  -5.2  -3.10112   GTAATTTTCCAAGCG        GGTGACCAGGTC ACTTC GACCTTGACATC        TTCGATCCCTTCGAT  53 120
        hisS  112279 ..  112311 +   -15  -4.58076   AAAACAGATTCGCAT      GGGAGTAGGAGCAA AGTCG TTGCTCCTGCTCTC      TTTTATCTAGCTTCT 100 62
        thrC  113932 ..  113945 +  -8.1  -4.58424   TTAGAAAGATCAAAA               GAGCC GTTT GGCTC                TTTTATATACTCATG  88 50
   Spaf_0101 NONE
   Spaf_0102  116004 ..  116021 +  -6.2  -5.71712   ATAATCTCCCTAAGA             GTCGCC AAATCA GGCGGC              TTTTTTTGTGTGAAA  91 165
   Spaf_0103 NONE
   Spaf_0104  117274 ..  117300 + -17.4  -4.62471   CACCGCGGACACTAC         GCCCTCACACAG TTT TTGTGTGAGGGC         TTTTCTATGTGCCTT 100 360
        trpE NONE
        trpG NONE
        trpD NONE
        trpC NONE
        trpF NONE
        trpB NONE
        trpA  123687 ..  123708 +  -6.7  -3.65604   TTCCATTCATCATCA           GCTTGATTCT CCT AGA-TCAAGC           TCTTTGTCTACTATT  66 49
   Spaf_0113  125462 ..  125481 + -12.2  -4.96848   AACTCCTAAAGAAGG            CTCTACCC GAAA GGGTAGAG             TTTTTATGTACCAGA 100 219
        polA NONE
   Spaf_0115  128786 ..  128820 + -17.4   -3.4691   AACAGTAGGGCTATA     GAAGAAAACCCCAG CAGGAAA CTGGGGTTTTCTTC     TTACTCTTATTCAGT 100 77
   Spaf_0117  131116 ..  131166 + -11.5  -4.40237   CCTAATCAACTGTGC GGGGGCGAGGCGACGAACAAATT GGATATA AATTTGTTC-T-GTCTCGCTCCC TTTTCCTATATAATA  95 152
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB  134264 ..  134293 +  -8.5  -2.85803   ACACTTTCCGCCAGC       TCGG-TAGCGCTGC ATA GCAGCGCAAGCCGC       TGTGGTACTAATTTT  66 58
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
   Spaf_0130 NONE
        rplX NONE
        rplE NONE
        rpsN  138134 ..  138167 +  -9.7  -3.66166   CCAGCAAAAATAGGA     GATTTGGTGACGGAGC GAA GCTCCGA-ATCAAATC     TATCTTTTTTGCCCA  84 68
        rpsH  138768 ..  138784 +  -2.1  -3.18199   CCCAAAGTTATGTCT              GCGAGAC AAT GCCTCGA              TTCACTTAGAAATTG  43 91
        rplF  139436 ..  139454 +  -7.5  -3.25073   GGTAAATAATGTAGT             TTGGTTG TTTTT CAACCAA             TCTTCATCTTACCAA  66 32
        rplR NONE
        rpsE NONE
        rpmD  140597 ..  140635 +  -7.5  -2.77685   AACTTAATTATAAGT   GTTTTAGGGGTTATGAG ATTTA TTCTCAGCCCCTAAAAC   TAAATTTATTCGTAT  64 44
        rplO  141157 ..  141175 +  -5.3  -2.79579   GGTGGTTCAGTTGAA             GTCATCT AAGTG AGGTGAC             CTATGTTTTTTAAAT  52 17
       secY1  142494 ..  142510 +  -8.7   -4.1922   AACAGAATAGATTAA              GGTTGAC TTT GTCAGCC              TTCTATTTTGTTTTT  83 31
   Spaf_0141 NONE
        infA  143636 ..  143647 +    -3  -2.53894   AAACCAATTTGCGAA                TACT GTAA AGTA                 ATTCGTCGTAATGGT  41 85
        rpsM NONE
        rpsK NONE
        rpoA NONE
        rplQ  146009 ..  146057 + -20.7  -4.77629   TGAATGAATGGTAGA CGCTTGTTTACGAAATTGCTTTA ACT TAAAACAATTTCGTAAGCAGGCG TTTTGTCTTGCTTTT 100 146
   Spaf_0147  147444 ..  147480 +  -3.3  -5.00616   TTTATTATGAGCTTT    TTTCGATTTTTTTAAAA AAC TTTTAAAAAAAATAAAA    TTTTTTCAAAAAAAG  70 51
        paaG  156771 ..  156783 +  -3.5  -2.74286   TGTATTTTTTCTGTG                TTTTT TGA AAAAA                TGCTTGCAAATTATT  43 44
   Spaf_0152 NONE
        fabH NONE
        acpP  158547 ..  158568 +  -8.1  -3.57587   AAAATAATGATAGAT           GAGAGTATC GAAA GATATTCTC            TCTTGTTTAGGTAAT  72 34
        fabK NONE
        fabD NONE
        fabG NONE
        fabF NONE
        accB NONE
        fabZ NONE
        accC  164961 ..  164979 +  -8.2  -3.21924   AGGCTTTTATAGTAA             TGCTATAG ATA CTGTAGCA             TATTATAAGGAGTAA  69 92
        accD NONE
        accA  166632 ..  166657 + -11.3  -5.49809   GTAAATATTAAAAAA         CTGAG-CTTGCA ATT TGCAAGACTCAG         TTTTTTTAAGCTTTA 100 30
   Spaf_0173  175384 ..  175403 +  -8.6   -5.0133   GAAATATTCAAAAAG            GAATGGGG TGAC TCCCATTC             TTTTTTGGAAGGATA 100 49
   Spaf_0174 NONE
   Spaf_0175 NONE
   Spaf_0176  177747 ..  177766 + -10.8   -4.7078   AGAATAAGAAAAAAA            CGATTGAG TCTT CTCAATCG             TTTTTACCTGGTTGC  95 34
   Spaf_0180 NONE
   Spaf_0181 NONE
   Spaf_0182 NONE
        trmB  181854 ..  181877 +   -11  -3.58726   ATGAATAGAAAAGGA          GAGGCGGGGA AATA TCTTCGCCTC           TTATCTATGAGGAGG  84 85
   Spaf_0184 NONE
        nusA NONE
   Spaf_0186 NONE
   Spaf_0187 NONE
        infB  186902 ..  186936 + -10.1  -4.56597   AAATAAGCAAGCTGA     CTAGGAAAAAAGAGG CTTCC CCTCTGATTTCCTAG     TTTTTAAACACAGAG  91 35
        rbfA  187319 ..  187340 + -13.1  -4.41206   TGAACAAAGACTAGA           GAGGTTGGA ATTT TCCAACCTC            TTTTCTAGGATCCTT 100 27
   Spaf_0190  189137 ..  189161 +  -7.2  -5.05079   TTAATGAATGTCAAA          CAGAGTAAGT AGGAA GCTTGCTCTG          TTTTTATATGATTCT  85 37
        nagA  190539 ..  190585 +  -4.7  -5.19879   AGATTAGACAAAAAA GCGAACAAGA-CAGTAT-TCTGA GTG TCAGATAAACTTCTTTTGTTCGC TTTTTATATTTAAGG  79 129
   Spaf_0192 NONE
   Spaf_0193  191827 ..  191847 +  -2.6   -5.9362   TCTAACAATAAAAAT           C-GAGGACA GTTT TGTTCTCTG            TTTTTTTATCTTTTC  85 50
   Spaf_0194  196406 ..  196433 + -15.8  -5.27938   TTTGTTAACCTAGAA        TCCATCTGAAAC ATTT GTTTCAGATGGA         TTTTTATTTACAAGT 100 55
        glyQ  197725 ..  197744 +  -7.2  -4.11216   TGATACCAGGCAAAA            TTGGAGACC TTA GG-CTCCAA            TTTTAGCAATGAAAC  73 125
        glyS NONE
   Spaf_0197  200162 ..  200197 + -19.3  -3.08867   ACCCCAATTCATAAT    CAAAAGAGTGCTGGA AGAAAC TCCAGCACTCTTTTG     TATCTTCAAAATTCA 100 27
   Spaf_0198  201714 ..  201739 + -15.5  -2.68952   ATAAATAAACAGCAG         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTCTTTGGA 100 33
        mraW NONE
   Spaf_0201 NONE
        pbpX NONE
        mraY  206868 ..  206885 +  -9.1   -5.4833   CTACCTATAAAAAGA             CGGTGGG CTTG CCCATCG              TTTTTTGTTGACTCA 100 31
   Spaf_0204  208426 ..  208453 +  -7.2  -5.26155   ACTTGTCTAAAATTA        TGATAGACTA AATTTGAG TAGTCTATCA         TTTTTCTATTTCTGT  95 112
   Spaf_0205  209318 ..  209331 +  -2.3    -2.912   AATTGATTTACCAGA               TCAGG AGGT CCGGA                TCTAATGATTTATAT  41 154
   Spaf_0206  210101 ..  210123 +   -12  -4.77173   AGAGAAGAGGTAAGA           CTCAGCTGGC GGT GCTAGCTGGG           TTTGTTTTCTGAAAA 100 47
   Spaf_0207 NONE
   Spaf_0208  211371 ..  211390 +    -5   -5.5943   TTAATCTTTTAAAAA            TCTGAGGT TTGT GTCTCAGA             TTTTTTTCGTGCTTT  88 37
        pncB NONE
   Spaf_0210  214032 ..  214049 +  -6.2  -4.80959   AAACATCAAAAAGAA             GGGCGG TTTCAT CCGTCC              TTTTCTTCTAGATTA  78 276
   Spaf_0211  214658 ..  214671 +  -3.8  -3.32518   TATTCCATACAGAAA               CCCT CTCTAT AGGG                TGATTTTTACTTGAA  50 14
        pepC  216083 ..  216096 +  -8.1  -5.31456   ATAATCAATCCAAAA               GAGCC CTTG GGCTC                TTTTTTGTCCCTTGA 100 37
   Spaf_0213  217334 ..  217347 +  -3.1  -3.73783   GAGCTTGAAGAAGAT               TCTTC GGTA GAGGA                TTCTTCAGTTGAATA  51 363
   Spaf_0216 NONE
   Spaf_0217  221365 ..  221390 +  -6.1  -5.06451   TTGCATATAGGTTGG         TGAGGTGGAGA GAGA TCTCAACCTCC          TTTTTTAAAGTGATA  80 427
   Spaf_0218 NONE
   Spaf_0220  224174 ..  224199 + -13.3   -4.4727   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTCTGAGTATTAA 100 219
   Spaf_0222  226553 ..  226575 +  -9.2  -5.45802   CAAAATAATCAAAAA           GCTTGAGATG GAG CATCTTGAGC           TTTTTGTTTTAAAAA 100 33
   Spaf_0223 NONE
        rpoZ  227623 ..  227647 +  -8.7  -5.32699   GATGGTGAAAAAATT          TAAGGTTGGGA GCT TCTCAATCTTA          TTTTTTGCTATTTAA 100 23
        priA NONE
   Spaf_0226 NONE
         sun NONE
   Spaf_0228 NONE
   Spaf_0229  235045 ..  235093 + -15.9  -2.90615   TAAATATTTCCATAA TAAAACGCATAATATCAG-TAT ATATAG ATACCTGATATTATGCGTTTTA TAGTTTCAAACACAT 100 96
   Spaf_0230  237431 ..  237458 + -13.6   -5.4251   TTCTGATACCAAGGA        CACCCAAAGGAT TTCT ATCTTTTGGGTG         TTTTTTCTCTCTCCG 100 89
   Spaf_0232 NONE
   Spaf_0233 NONE
   Spaf_0234 NONE
   Spaf_0235 NONE
   Spaf_0236  241696 ..  241724 + -13.3  -5.36441   AGAAAAAATAAAAAA        CTTCGATAGGTTT ATA AACCCTATCGAAG        TTTTTTATATAAAGA 100 30
       comFA  244765 ..  244776 +  -2.2  -3.05224   AATAAAGGAAATGAA                TCAG GAGG CTGG                 ATTTTGAAAGAATGT  42 7
       comFC NONE
   Spaf_0241  246113 ..  246134 +  -8.7  -5.36441   TTAAATATAGAGGAA           TCGGGGGCA TCTT TGCTCCTGA            TTTTTTATGTAAACA 100 69
   Spaf_0247  256674 ..  256691 +  -2.1  -2.54434   AGAGGTTTATGATTA             TTTTAAT GCAG ATTGAAA              GCTTATTTTATTAAC  40 10
   Spaf_0248  257846 ..  257858 +  -7.7  -6.17669   GGTATAGATTATAAA                GGAGT TTT ACTCC                TTTTTTTGTTTTATT 100 513
        adcR NONE
        adcC NONE
        adcB NONE
        adcA  261402 ..  261428 +  -4.4  -4.86621   AGCTGTATCAATAGA         GAGACTAGGA CTGATTA TCCCGGTCTC         TTTTTGATTAAAAAT  71 42
   Spaf_0253  262124 ..  262137 +  -2.3  -3.47541   AGAAATCTCCGACGG               GAGAG AATA CTCAC                TACTTTTTCTTTATG  47 68
   Spaf_0254  263715 ..  263740 + -15.5  -2.79912   AAATGGTAGAAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 207
   Spaf_0256  267472 ..  267485 +  -2.4  -2.87325   GTATTCGTTAATGAG               CTGT CGCTTA ACAG                ATTCTTCTAAAGAAT  41 30
   Spaf_0257  270225 ..  270263 +  -8.3  -4.11216   AATAAAAAGAAAGGA   GGAGCGAAAAAAGTA AGAACTGAC TGCTTTTCTCGCTCC   TTTTGCAGGTGAAAG  79 61
   Spaf_0258 NONE
   Spaf_0259  273068 ..  273111 +  -6.2  -5.04385   CATCCACGGTCGATA GGAGTAGAAGAGGAGCTGT GTTTACG ATCGCTCTT-TTCTACTCC TTTTTTAAAGCTATG  80 69
   Spaf_0260 NONE
   Spaf_0261 NONE
   Spaf_0262  276700 ..  276737 + -14.3  -2.69151   TAAGAAACAGGTAGT   GTAAAAAGGCTTTGGGG CTGT CTCCAAGGCCTTTTCAC    TCCTCTATGAAAACA  95 38
   Spaf_0263 NONE
   Spaf_0264 NONE
   Spaf_0265  280437 ..  280459 + -14.2  -4.41494   AGAAGATGAGTAAAA           GGCTGAGACG CTT TGTCTCAGCC           TTTTAATTGAAGATA 100 28
   Spaf_0266 NONE
   Spaf_0267  281810 ..  281832 + -13.5   -4.4078   AGAAGATGAGTAAAA           GGCTGAGAC AAATC GTCTCAGCC           TTTTAATTGAAGACA 100 72
   Spaf_0270  283247 ..  283263 +  -8.7  -5.15634   CACTTAGCCCCAAAA              GCCGTTT TTT AAGCGGC              TTTTTTGCTAGACTG 100 94
   Spaf_0271 NONE
   Spaf_0272 NONE
   Spaf_0273 NONE
   Spaf_0274  285933 ..  285959 +   -11  -4.68846   AAGTGTATAAGAAAA         CCACGAAGTT CATACCA AACTTCGTGG         TTTTACTTTCTTAAT  95 51
   Spaf_0276  289981 ..  290021 +  -4.2  -4.92363   CCAAATAAGAGCTTA CAGCAGTTAAATCTTACTT GAAT AAGTC-GATTTAGCTGCTC  TTTTTGTGCCTATTT  74 141
        rpoB  293871 ..  293884 +  -5.3  -3.15544   ACAAGGAGGTGGCAA               GAAAG TTTC CTTTC                TTCCTCCACCTAAGC  55 110
        rpoC  297608 ..  297628 +    -9  -5.75342   AGAATAAGAAAATTA            GTCGGAAC TACAT GTTCCGGC            TTTTTTTTGAAAAAA 100 34
   Spaf_0279 NONE
   Spaf_0280 NONE
   Spaf_0281 NONE
   Spaf_0282  302452 ..  302489 +  -7.2  -4.32131   TTGAAGTTAGAAAAA   GAGTCTC-ACAAGATAG CACTT CTATTTTGTAGGGGCTC   TTTGATTTATTTTCA  75 45
   Spaf_0283  303060 ..  303091 + -10.4  -5.95449   TCATAAGAAAAATCA      GAAGATTTTTTAGA GCGA TCTAGAAAGTCTTC       TTTTTTGTTTTCTTT 100 35
   Spaf_0284 NONE
       comYB NONE
       comYC NONE
       comYD  305749 ..  305765 +  -3.7  -3.40788   CATCCGTTCCCGCTA              GTATTCT CAT AGAATCC              TTAGTTGCCTTGAGT  50 25
   Spaf_0289 NONE
       comGF NONE
   Spaf_0291 NONE
   Spaf_0292  307851 ..  307861 +  -5.4  -2.66316   AGGATAGTGAAATTT                 GATC AAA GATC                 TGATATAATAGAGGA  51 24
        ackA  309110 ..  309144 + -12.3  -4.36914   TAAACTGAAATAAAG    TGAGAAGGCTGGAGGC GAAA GCC-CCAGTCTTCTTA     TTTTATACAAGAAAG 100 38
   Spaf_0294  309989 ..  310015 +  -6.7  -4.64676   TGGAGAATGAACTCA        GAGGTTTAGAAC ATTT GTTCTA-GCCTC         TTTTGTTCGCAATCA  78 113
        folP NONE
   Spaf_0296 NONE
        folE NONE
        folK  313885 ..  313912 + -14.3  -4.36914   TCTCAATCATTCCGA        GTGCCTGAAAC TGAGTC GTTTCAGGCAC         TTTTCTCACGGCGGA 100 188
   Spaf_0301 NONE
   Spaf_0302 NONE
   Spaf_0303  318241 ..  318269 + -10.5  -4.74084   CATGAATAAAGAGAA        GAATCTAGGAT GTTTTGG ATCCTAGATTC        TTTTGATTTTGGTTT 100 32
   Spaf_0304  318746 ..  318767 +  -3.7   -5.2189   GGATCAAAAAAGAAA           GCTGGTT CGTTTATA GACCAGC            TTTTTTGATACTTGC  74 40
        rbsB NONE
   Spaf_0306 NONE
   Spaf_0307 NONE
   Spaf_0308  323231 ..  323242 +  -4.4  -5.84381   TGGCATTTTGTCAAG                TGAC AGAT GTCA                 TTTTTTTATTGCTAA  91 53
   Spaf_0309 NONE
   Spaf_0310  324268 ..  324283 +  -2.6  -4.56597   GTTATTGGGATGATT              TCAAAT CAAA ATTTGG               TTTTTAAACCCAACA  62 3
   Spaf_0311 NONE
   Spaf_0312  326062 ..  326108 +  -8.2  -4.82901   TGCTAGTAGGAGTTT TTGAGAATGAAGTGAATGGA CCTCCTT TACTTGCACTTCATTCTCAA TTTTTATCAGGAGGA  95 60
   Spaf_0313  326434 ..  326455 +  -2.3   -5.8187   TTGATATTTTAGAAA           CATCTCA TTTATTTT TGAGGTG            TTTTTTTCTTGACTA  83 37
       groES NONE
       groEL  328567 ..  328589 +   -12  -4.63527   TCTTACTAGCTCAAA           GGGAGGAAAG CAT CGTTCCTCCC           TTTTTCGCGTCGTAA 100 112
        comE NONE
        comD  331639 ..  331664 + -13.3    -5.055   ATCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTTGACCATTCA 100 181
   Spaf_0320 NONE
   Spaf_0321  333319 ..  333344 + -13.3  -4.88736   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGTGCATAATG 100 188
   Spaf_0326  339220 ..  339230 +    -4  -2.97029   AATAAGGAGGATAAC                 TATG GAT CATA                 ATTTAATTAGTAACA  47 36
   Spaf_0327 NONE
   Spaf_0328  340601 ..  340617 +  -8.7  -4.43012   AAGACAAGCAAAAAA              GCCTTGG TTA TCAAGGC              TTTTACTGTTGAAGT  90 76
   Spaf_0331 NONE
   Spaf_0332 NONE
   Spaf_0333 NONE
        prmA NONE
        rsmE  346428 ..  346456 + -12.6  -5.75342   CACAGAATTAATGAA        CTAACGAAGTGA AGGAA TCGCTTCGTTAG        TTTTTTTTACAAAAA 100 22
   Spaf_0336  346956 ..  346968 +  -3.4   -3.0701   CTTCAATTGAAGAAA                CCAA CTTAT TTGG                TTGGATACCGGTTCT  45 66
   Spaf_0337  347575 ..  347585 +  -2.6  -3.62032   ATATCTGTTCCAAAA                 TTTT AAA AAAA                 TTTAGAAATTACTGT  48 97
   Spaf_0338 NONE
   Spaf_0339 NONE
   Spaf_0340 NONE
   Spaf_0341  350068 ..  350082 +  -3.6  -2.66559   AACGCTTTGCAAGAG               TTTTGT AAG ACAAAG               TAGTATCCGTATATT  45 8
        relA NONE
   Spaf_0343  353044 ..  353067 + -11.1  -4.70659   CCATAAGTAAGAAAG          CATGCAGTC GAATTA GACTGCATG           TTTTTCGATATAAAG  95 35
   Spaf_0345  355231 ..  355245 +   -10  -5.42514   TGTAGATATAGAAAA               GAGGTC GCA GACCTC               TTTTTTCGTTTATCC 100 397
        pepO  360414 ..  360454 + -14.2  -4.84017   AGCGAGAAGAAAATA G-GAGATTGACGGTGTGGGC CAT GCCCAC-CAGTCAATCTCTC TTTTTCTCGACGCTT 100 66
   Spaf_0352 NONE
   Spaf_0353  363278 ..  363297 +  -2.8    -5.626   AGAATAATAAGAAGA            TTGCTTAC ATTT GTGGGCAG             TTTTTTTATAAGGTG  81 34
        celC NONE
        celA NONE
        celB  365419 ..  365430 +  -5.8  -3.69216   TCCTAAAAGATAATG                GCAC ATAT GTGC                 TGTTTTAGATAGAAC  63 43
        pflD NONE
   Spaf_0358 NONE
        gldA  369816 ..  369841 + -15.5  -2.79912   ATGTAGACAAACCAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 65
        aliA  373484 ..  373513 + -16.5  -2.55505   TGAAGAAAACAGGAA       GGGAGGCTGGGAC AAAA GTCCTAGCCTCTC        AATTATTTTTGGATT 100 49
        leuS  376246 ..  376272 + -13.8  -5.16206   GAAATAAATTTAAAA         GTCCTTCAGAGC TAA GTTCTGGAGGAC         TTTTTGTATTCATTT 100 34
   Spaf_0364  377140 ..  377189 + -14.6  -4.01939   ATTACCCTTATCTCT TTCATCAAAAAGCTTCGGTAGG AAGAAC CCTACCGAGGCTTTTTAATAAA TTTCATTCTGCATTA 100 61
   Spaf_0366 NONE
   Spaf_0367 NONE
   Spaf_0368 NONE
   Spaf_0369 NONE
   Spaf_0370  381650 ..  381668 + -10.3  -4.72386   CCTGACTCCACAAAA             GCAACGG ATTTG CCGTTGC             TTTTTGCATGGTTTC 100 64
   Spaf_0371  382651 ..  382678 +   -10  -5.35815   TTATAATGAGGACCA        GCTTCCTTAGGAA TTT TTCCTAAGGG-GC        TTTTTCTTTAATCTG 100 35
        bglB  384448 ..  384460 +  -9.1   -3.6682   AAGTAACTGAGAAAT                CGACC ATG GGTCG                TTTGACTAAGTAAAG  78 312
        glmS  386334 ..  386374 +   -12  -4.55295   TTTGTTTATATAGAA  AAAAACATCCTCGTTAGG TTTTT CCTAGCGAGGATGTTTGC  TTTATTTGTCAAAAC 100 42
   Spaf_0375 NONE
   Spaf_0377 NONE
   Spaf_0378  390890 ..  390918 +  -6.1  -4.14627   AAAGAGAAATAAGAT       GGAA-CTGGGTGC GCATA GC-CCCAGCTTCC       TTATTTCTATACGGA  67 29
   Spaf_0379 NONE
   Spaf_0380 NONE
   Spaf_0381  393127 ..  393145 +  -6.7   -5.1925   TGATTTAACAAGAGA             CACACCT AGTAA GGGTGTG             TTTTTTAGGTTCTGG  86 33
   Spaf_0382  393695 ..  393710 +    -4  -3.07198   ATAAGATGGACGTTA              TGGTTA TTGC TAACCG               CTTTGTGTCTAGGAG  47 95
   Spaf_0383  394467 ..  394479 +  -4.9  -3.19048   GCAATAGCAACCTCA                TCTAT TTT ATAGA                ATTTATTGATTGGGC  53 34
   Spaf_0384 NONE
   Spaf_0385 NONE
   Spaf_0386 NONE
   Spaf_0387  397310 ..  397327 +  -5.6  -5.54894   TATTTAAATGTGGAA             TCTGGA GTGACA TCCAGA              TTTTTTTAATAAATT  88 52
        clpL  399792 ..  399820 +  -9.7   -5.4505   CAGTGATAGAAAAAA        TGGGGACTGCTAT AAT ATAGCAGTCTTTA        TTTTTTCTTCCCACC 100 48
   Spaf_0389  400249 ..  400261 +  -4.8  -6.20267   TGACTAGTCAGTAGC                CCAC TTTTC GTGG                TTTTTTTCTTTTTCA 100 34
        yajC  400734 ..  400747 +  -8.1  -5.14563   ATAATTATCAAAGAA               GAGGC AAAG GCCTC                TTTTTTGATGGGCAA 100 37
   Spaf_0391 NONE
        cdsA NONE
   Spaf_0393 NONE
        proS  406010 ..  406024 +  -7.2  -2.90462   AAAAAATTACATTGC               TGTAAC AAA GTTACA               ATGTTTTATCAGTTT  61 434
   Spaf_0395  406562 ..  406593 + -10.3  -4.85822   TTGATATATAGAAAA      TAGGGGTTAGG TCCATCCATC CCTAACCCCTA       TTTTGTATTTATGAT 100 93
   Spaf_0396 NONE
   Spaf_0397 NONE
   Spaf_0398 NONE
   Spaf_0399 NONE
        ftsK NONE
   Spaf_0401 NONE
   Spaf_0402 NONE
   Spaf_0403 NONE
   Spaf_0404 NONE
   Spaf_0405 NONE
   Spaf_0406  420019 ..  420036 +    -7  -5.80817   AAAGATGAAAAGAAA             TCACCG ATCTAG CGGTGA              TTTTTTTGTCTTCAC 100 62
        polC  424636 ..  424674 + -10.4  -5.46657   AACGAATGCCAGGTA   GAAAGCTATTGTATATCC AAT GGATTTACAACAGCCTTC   TTTTTTGTTACAATG 100 88
   Spaf_0408 NONE
   Spaf_0409 NONE
   Spaf_0410  425422 ..  425448 + -10.3  -4.72386   AAGATTAACTGACAG         CCTCTATTTTC CTTTT GGAAATAGAGG         TTTTTCAGTCCTTTC 100 33
       spoVK  428439 ..  428464 + -15.5  -2.79912   AGGATCAATAAAAAG         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 47
   Spaf_0412  429956 ..  429989 + -19.9  -5.04325   AGTTTCGTAAAAAAA     GTAAGGTAGTAGTGA TGAT TCACTACTACCTTAC      TTTTTGTCATTTACG 100 67
   Spaf_0416  432668 ..  432691 +  -8.3  -5.64006   AATTGTTAGCACGAA          CGAAATGAT GGAGAA ATCATTTCG           TTTTTTTAATTCAAT 100 18
   Spaf_0417 NONE
       rsuA2  434676 ..  434698 +    -7  -3.47541   TAAGCGAAAAAACAA           GCAGTCTG ACTTTAA CGGACTGC           TACTTTTTATTTGTA  67 38
   Spaf_0420  436990 ..  437015 + -15.5  -2.79912   CTTCATATCGATAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 42
        rpsO  437799 ..  437819 +  -6.9  -5.45813   GAATACAAAAGTTAA            GTTACTCTA TTA TAGGGTGAC            TTTTCTTTTTTACTA 100 155
   Spaf_0422  438433 ..  438444 +  -2.2  -4.09739   ACAAAAGAAGGCTTG                GTCT TGGT GGAC                 TTTTGAGCAACTTGG  53 92
   Spaf_0423  438748 ..  438780 +  -9.9  -4.68724   ATATATCCAAAGAAA     GAGCCCTGC-CCTC TTAAAT GAGGAGCAAGGCTC      TTTTGTCTTCAATAA  91 80
   Spaf_0427 NONE
       ssuRB NONE
        prgA  446464 ..  446485 +  -7.4  -4.75174   GTAATTTAGTTTAAA           GCAAACAT GTAAAA ATGTTTGC            TTTTTAAATTAGGTC  83 59
   Spaf_0430  447343 ..  447367 + -14.5  -4.19953   AATCAAATATTCCTC          GAAAAAGGCTT TTA AAGCCTTTTTC          TTTTGGACTTGAATA 100 88
        pnpT NONE
        cysE  450958 ..  450968 +  -3.2  -3.05596   GAGTTTGTAAGGAGA                 TCGC TAC GTGA                 TTCAATCAACCAATA  45 31
   Spaf_0434 NONE
        cysS NONE
   Spaf_0436 NONE
   Spaf_0437  454458 ..  454484 + -16.8   -5.8096   AACGGAATAAATCCA         GAGTTTTGTGCA ACT TGCACAAAACTC         TTTTTCTTTTTTGTG 100 40
        msmX  455716 ..  455742 +   -16  -4.19735   CCTACTGGCGCTATA         GAGACTGAGACA ATG TGTCTCGGTCTC         TTTCATTTTAAGGAG 100 43
   Spaf_0439  457869 ..  457892 + -15.4    -4.371   ATTTATCTCCAAAAA          GAACCTTCGC GTCT GCGAAGGTTC           TTTTCATGTCATCCA 100 462
        trmH NONE
   Spaf_0443 NONE
   Spaf_0444  464541 ..  464557 +  -2.2  -2.91276   TTGATACAATAGTAG              GCGGTA TTGTT TACCCC              ATTTGTAAGGCCCCG  41 74
        rplM  465067 ..  465082 +    -4  -2.68823   ACAACAACCAGAAGT              TCTTGA TATT TCAGGA               CTTATCTAAGGAAAG  45 1
        rpsI  465529 ..  465556 +  -9.3  -5.36441   CTATCAACGTTTACA        GACATTCAAGA ATTTTC TCTTGGATGTC         TTTTTTGTATAAAAA 100 52
   Spaf_0447 NONE
        tcrB  468423 ..  468461 + -14.1  -5.10877   TGGCTCTTTGTAAAA   TCGTGTTGGTAGAAGTA GACAA TTTTTCTACCAACACGA   TTTTTAATTTATTAT 100 114
        cadD NONE
        cadX  470134 ..  470144 +    -4  -3.38256   ATCTGAAAGAAAATG                 TATC TTT GATA                 TTAGTCATTTATTGT  50 214
   Spaf_0451  471135 ..  471159 +  -7.9  -4.23999   AACACATAACAAAAA          GAGGAGCTTCA CAA TAAAGTTCCTC          TTCTTTTAAATATCC  78 235
Spaf_igr04511 NONE
Spaf_igr04512 NONE
        pspC NONE
   Spaf_0453  473786 ..  473799 +  -8.1  -5.38047   AATCATTACAATGAG               CACCC TTCG GGGTG                TTTTTTCTATACCTA 100 193
   Spaf_0455  475056 ..  475079 +  -8.9  -5.86061   GTCATTCCTAACAGA          CGCTCAAGA GGAGAA TCTTGGGCG           TTTTTTTTGATAAAA 100 61
   Spaf_0456 NONE
   Spaf_0457  477003 ..  477030 +  -8.6  -4.36914   ATATCAATGAAGAAA        TCACCTTTTGTCA TTG TG-CAAAGGGTGA        TTTTATAACGAAAAA  90 168
   Spaf_0458  478322 ..  478361 +  -7.9  -4.38712   TCGACAATCCAAAAA  CAATTGAGAGGCTAGGA CTTTTA TCCCGGCCTCTTTATTG   TTTTATACACGTAAA  82 169
   Spaf_0459  478706 ..  478721 +  -2.6  -3.89346   AAAGCGCAGCGATTT              TTGATGC CAT GCA-CAA              TTTGTAAGATAGGGG  52 3
   Spaf_0460  480120 ..  480142 +  -2.7  -5.55769   AACAAGAATGGAAAA           GTCTGAGAT AAGGA AATTCAGAC           TTTTTTCTTGTAAAA  77 61
        pgaM  480900 ..  480912 +  -2.7  -2.94598   TTACTGTTCTGGCTT                CTTTT TGT AAGAG                CTTTCCTACTTTCTT  43 96
       pgaM2 NONE
   Spaf_0463  482476 ..  482502 + -12.5  -5.30575   TCTTAAGAATGATTT         TTAGCACTCTT GAAAA AAGAGTGCTAA         TTTTTTGGATTTTTC 100 62
        hrcA NONE
        grpE  484443 ..  484464 +  -8.1  -3.72695   CGGTATGTTCGCAAA           CTTTGAGACC TTA GG-CTCAAAG           TTTAGTCAAAGAGAT  74 278
        dnaK  486545 ..  486567 +  -9.9  -4.66609   TGATAAAAAGAAATC           CAGAGGTTG CAACC CAGCCTCTG           TTTTTCGGTAAAATA  91 183
   Spaf_0468  487334 ..  487353 +  -2.9  -2.98088   ACGCAAGCGTCCGTC            GTCAAAA CTCCTA TTTTGGC             TGTGTCCGTTTGACG  43 131
        dnaJ  488604 ..  488615 +  -4.4  -3.37761   CTAATTAAAGAATAA                TGAG GACC CTCA                 TTGAATTTATTAAGA  53 109
       nagZ2  492403 ..  492428 + -13.3  -5.19879   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGTGTTTGCAA 100 207
   Spaf_0472 NONE
        thiD NONE
   Spaf_0474 NONE
   Spaf_0475 NONE
   Spaf_0476  495046 ..  495063 +  -4.1  -5.47218   AAATCATAATTAGAA             CTAGCTT TTAA GGGCTAG              TTTTTTTGGATGAAA  81 32
   Spaf_0477  496453 ..  496492 + -18.2  -3.73224   CAAAAGTAAAATAAT  TGAGAAAAAAGAAGAGCC TTGA GGCTCTTCTTTTTTCTGA   TTTCATGGAGAATCC 100 27
        rpoE  497268 ..  497299 + -13.8  -3.27648   AAGAATAAATCATAA      TAAGAGGCTGGGAC AAAA GTCCTAGCCTCTCA       ATTGTTTTTGGATTG 100 33
   Spaf_0479  498306 ..  498330 + -11.5   -5.8096   CTCATTTTGAGGTCG          GAGCTCCCTAA GGA TTAGGGAGCTA          TTTTTGTTTTTTCTG 100 115
        pyrG  500223 ..  500238 +  -7.6  -6.09196   TCCGCATCGGATCAA              GATAGC TTCG GCTATC               TTTTTTTGTTTTCAA 100 245
        fbaA  501988 ..  502008 +  -7.6  -5.95539   TAAAAAACAGGAAAG            CAAGGTCC CATGT GGATCTTG            TTTTTTTGTTTGGGA 100 41
   Spaf_0482 NONE
   Spaf_0483  503492 ..  503502 +    -4  -3.30124   ATCAATCATTTTGAT                 TCAA GTT TTGA                 TTATAAAAAATGGGA  50 193
   Spaf_0484 NONE
   Spaf_0485 NONE
   Spaf_0486  504913 ..  504929 + -10.9  -5.34632   AACTTGGTAGAGGGA              GGTGATG CAG CATCACC              TTTTTATCTTTTCTT 100 31
   Spaf_0487 NONE
   Spaf_0488 NONE
   Spaf_0489 NONE
   Spaf_0490  508526 ..  508541 +  -6.8  -5.27779   ATGATACATTGAAAA              GCCTGT TGTG ACGGGC               TTTTTTGATGTTGAA  91 164
   Spaf_0491  509456 ..  509505 + -12.4  -3.30159   AACGCTCTTAAAATT GAAAACACCCCAAAAGTTAGAT TTTCCT ATCTATCTTTCAGGGTGTTTTC TTATAGCCAAATTGG  89 51
   Spaf_0492  510897 ..  510919 + -12.1  -5.27923   TTTGTAACAATAATT           GAGTGGACA TGATT TGTCCACTC           TTTTTTGTAAACTTA 100 220
   Spaf_0493  512925 ..  512935 +    -4  -3.56958   TGATTGAATCTAAAC                 CATT TGA AATG                 TTATAATATTATTAA  52 122
   Spaf_0494  513929 ..  513947 +  -3.2  -3.01924   TAGATGCTTGAGAGC             GATAAGAA AAT TTTTTGTC             TGTTAGAAAAGGGTA  45 38
   Spaf_0495  515396 ..  515443 +  -5.2  -5.40474   GAAACGGCTTTGAAG GAGCGAGAC-G-ACGAATGATGGT GATA ACCG--ATTCGTTCTGTCTCGCTC TTTTTTTGACCGCAT  84 442
   Spaf_0496  515893 ..  515918 + -15.5  -2.68952   AACAAATAAAGTAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTCTTTGGA 100 32
   Spaf_0497 NONE
   Spaf_0498  517396 ..  517419 +  -4.6  -3.70446   TTTGGTAATATAGTA          CGGTATGTGGT GCT AGCACAT-CCG          TTATATTAGATCTAA  57 88
        rpmB  517647 ..  517678 +   -16   -4.7373   CGCGTTTAATAAAGA      AAGAAGGCTGGACA AAAA TGTCCAGCCTTCTC       TTTTTGATAGGATAG 100 32
   Spaf_0500 NONE
   Spaf_0501  520030 ..  520045 +    -9  -5.76633   AATAATTGAACAGAA              GGTTCC TTTC GGAACC               TTTTTTTGTATATAG 100 36
   Spaf_0502 NONE
   Spaf_0503  520882 ..  520904 +  -2.7  -4.50976   AAAAAGTCGAGTGGA           GTCACTTAG CTTTT TTTAGTGAC           TTTTGTCATGTGAGC  60 50
   Spaf_0504 NONE
   Spaf_0505 NONE
   Spaf_0506 NONE
        desK NONE
   Spaf_0508  524589 ..  524610 +  -9.5   -5.9873   TATAAGGAAGAAAAA           GTTTCTAGG ATTT CCTAGAGAC            TTTTTTTTCTGATAG 100 36
        ilvB NONE
        ilvH NONE
        ilvC  528048 ..  528071 +  -7.4  -5.14563   TCTGTAGAAGACTAA          GCAAGTTGGG ACAC CCTGGCTTGC           TTTTTTCATCAAAAC  90 44
        ilvA  529386 ..  529412 +  -8.2  -5.24531   TAATCTACTATTTAA         GCAATATATTTT TAT GGAATATATTGC         TTTTTTATGAAGACT 100 55
   Spaf_0513  530358 ..  530368 +  -2.6  -3.37655   GCCCTGAAAGCAAAG                 TAAA CTT TTTA                 TCATTTTTTAAAAAA  46 23
   Spaf_0514  530705 ..  530724 + -12.2  -5.72616   TGTTCCAATTGAAAA            CCAGAGAG TTTG CTCTCTGG             TTTTTTTCTATGCCT 100 46
   Spaf_0517  535135 ..  535157 +  -3.5  -3.49168   GGTGCCTTCTAAGTA          GC-ACTAAGA ATGG TCTTGGTCGC           TCTTTCCCTTCTAGT  50 29
        bacA  536108 ..  536134 +  -9.5  -4.55689   GATCAAATTATTTTC        GAGGTTGGAGAC TTTT GTC-CCGACCTC         TTTTCTATGCATCCT  91 57
   Spaf_0520 NONE
   Spaf_0521 NONE
   Spaf_0522  538115 ..  538146 +  -8.3  -2.90392   TAAGAATAGTTCTAA      TCAAAAGAAAAGCC ATTTA GGCTTTT-TTTTGA      TATACTTGAAAGGTA  66 38
        sufC NONE
        sufD NONE
        sufS NONE
        nifU NONE
        sufB  543462 ..  543487 + -10.6  -5.33848   TTCATCAATCAAAAA         TCACAATGGA TTTGAC TCCATTGTGA          TTTTTTGCTTATAAT 100 47
   Spaf_0529  546949 ..  546976 +   -10  -4.14392   TATTGCTTTTCATTA        GAACTTTCTCTT CTAG GGGAGAAAGTTC         TTTTGGACATTAAAG  86 47
   Spaf_0530 NONE
   Spaf_0531 NONE
   Spaf_0532 NONE
   Spaf_0533  551440 ..  551459 + -10.8  -5.01553   AGACAAGAATATAAA            TAGAGAGG CTTT CCTCTCTA             TTTTCTTTATGCCTT 100 23
        rumA NONE
   Spaf_0538 NONE
   Spaf_0539 NONE
   Spaf_0540 NONE
   Spaf_0541 NONE
   Spaf_0542  564993 ..  565022 + -16.6  -5.45802   CGCGGATCAACACAT       TCGTCCCTGTCA GATTAA TGACAGGGACGA        TTTTTCTTTTACACC 100 249
   Spaf_0543 NONE
   Spaf_0544 NONE
   Spaf_0545 NONE
       valRS  569437 ..  569476 + -14.6  -5.02074   GAATGCCGTGTTTCA  GACTGAAGAAAA-AGTCCA TTT TGGACGATTTTCTTCAGTC  TTTTTTAAAAAATAG 100 57
   Spaf_0548 NONE
   Spaf_0549  572227 ..  572246 +    -5  -3.68351   CTTAGGCGCGGAAAA            TTTGAGAC TTTA GGCTCAAA             TTTAAGTCATGGAAC  59 141
   Spaf_0550 NONE
        nadD NONE
   Spaf_0552 NONE
   Spaf_0553  574369 ..  574379 +    -4  -2.75708   TTTGCGGATGTCTTA                 GATT ACA AATC                 AATTTTTTAAGGAAA  46 5
   Spaf_0554  574767 ..  574786 + -10.8  -4.79174   GCATAAGCAGGTAAA            CTCAGTTG GTAG CAACTGAG             TTTTGTTGGTTAAAT 100 35
   Spaf_0555 NONE
   Spaf_0556  576996 ..  577027 + -13.3  -5.75945   CGGAAACAGTGTTTA      TCTACTGTCTAAA AATTCC TTTAGACAGTAGA       TTTTTTTTACCAAAT 100 100
   Spaf_0557 NONE
   Spaf_0558  577691 ..  577705 +  -3.6  -3.66178   AGAGGATCTTTTTGA               TAGTTA GGA TAGCTA               TTTAAAATTCCCAAC  54 50
   Spaf_0559  578600 ..  578625 +  -7.7  -5.07275   ATAAATCAAGAAAAA         GGATAGCTT CTCAGATC AAGCTATCC          TTTTTCTCTGTCTGA  93 68
        asnA  582687 ..  582712 + -13.3  -4.50661   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTAATTGTCGCTT 100 183
   Spaf_0565 NONE
        coaD NONE
   Spaf_0567  584960 ..  584979 +  -7.2  -5.73978   GTTTTTGCTTATCAA            TCTCTCTA TTTT TAGAGGGA             TTTTTTCTTTATACT 100 125
        ccdA NONE
   Spaf_0569 NONE
   Spaf_0570 NONE
        msrA NONE
   Spaf_0572 NONE
   Spaf_0573  590335 ..  590360 + -15.5  -2.79912   CAATGAATATTCATA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 25
   Spaf_0574 NONE
        rlmN  592329 ..  592360 +  -9.6  -3.87977   AACTAACAAAAAGAG      GAAGAAGTCTGTTAC GGA GTGGCAG-CTTCTTC      TATTTTATCCTCTTG  83 64
       trpB2  594468 ..  594504 +  -6.6  -5.40072   AAGCGTGATAACTGA    GAAAGAGACAGGGTAC AAAGG GAATCTGGTCTCTTTC    TTTTTTTAGAGCAAA  89 77
   Spaf_0578 NONE
   Spaf_0579  595778 ..  595823 + -15.9  -3.25177   AGACGCCTAACCTAA TAAATAAAGCTCTAACTGCACA AAG TGTGTGGTTAGAGCTTT-TTTA TCTCGTTTTTTCAAG 100 31
        typA NONE
   Spaf_0582  598864 ..  598874 +  -8.2   -5.1166   GACGTGATTTTTAAA                 GCCC TTT GGGC                 TTTTTAATTTTGCTA 100 39
        murD NONE
        murG NONE
        ftsQ  602611 ..  602631 +  -3.3  -3.72984   AATGTCCATTATATG            CTTCTTTGT GAT ATAATGAAG            TTTGGATAGTTCTAA  52 74
        ftsA NONE
        ftsZ NONE
   Spaf_0588 NONE
   Spaf_0589  606798 ..  606820 +  -6.3  -4.67168   GTACTCTTGGACAAA           TGGTTCACC GCCTA GTTGAACCA           TTTTTGAGCCTTTTT  76 139
   Spaf_0590  607752 ..  607763 +  -2.2  -3.32769   GTAAAAAATGAGGAG                GAGT TATG GCTC                 TTACTGCTTTAGAAA  45 30
        divI  608761 ..  608792 +  -3.8  -5.68039   GAACAAAGGTGGTAC      CACGAGCAATCGT CCTTTTT AGGAT-GCTCGTG      TTTTTTTATAGCTTT  85 211
        ileS  611780 ..  611805 + -13.3   -4.7497   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTAATGGCTAGA 100 185
   Spaf_0597  615708 ..  615732 +  -7.9  -5.29782   AAGCAGCTGTGTGGA          TGAGTTTGGGG TGG TCTCAAGCTCA          TTTTTTGTCCATCTG  95 39
        folD NONE
   Spaf_0599 NONE
   Spaf_0600  618398 ..  618416 +  -6.8  -3.29837   AAATAATTTCCTAGT             TGAAAATG AAA CGTTTTCA             TGTTAGTATTTAAGA  62 27
   Spaf_0601 NONE
   Spaf_0602  620898 ..  620937 + -11.6  -4.96388   ATAGTTGACATTCAA  AAAGGTGGAAGGTAAGTT ATGG AATGTACCTTCCACCTTA   TTTTATTTAATAGTT 100 37
   Spaf_0603 NONE
   Spaf_0604  622701 ..  622711 +  -3.2  -3.10056   CAAGGTCTAGGTGGA                 TCTG GTA CAGG                 TATTAAGTAGGTGAT  45 5
       scrB2  624236 ..  624275 + -14.6  -5.02074   CTATGACTTGTCTCA  GACTGAAGAAAA-AGTCCA TTT TGGACGATTTTCTTCAGTC  TTTTTTAAAAAATAG 100 76
   Spaf_0606  624704 ..  624749 +  -8.5   -5.9667   ACTTGAATAAAATGA GGCTTGTAGAGAAAG-GAAATT CAT GATTTCGCTTTGTCTGCCAGCC TTTTTTTGTGTTTTT 100 74
   Spaf_0607 NONE
   Spaf_0608 NONE
        ispA NONE
        tlyA NONE
        argR NONE
        recN NONE
        pphA NONE
   Spaf_0614 NONE
        hupB  632185 ..  632206 + -10.9   -5.7946   TTGCATTTTGAAAAG           CCATCCTAG ATTT CTAGGGTGG            TTTTTTTGTTGGACA 100 41
        perR  633135 ..  633148 +  -8.1  -5.24531   AAAGACATTCCATTA               GAGCC GTCA GGCTC                TTTTTTGTGAGAAAT 100 42
       pgaM3  634090 ..  634105 +    -9  -5.29385   TTATCCATACAAAAA              GCTGAC TTCG GTCAGC               TTTTTTGCTTGCCTT 100 158
        metG  636230 ..  636249 +  -7.8  -4.77567   ATAGACAAAGAAAAA            GCTCTCCT GGAA GGGAGGGC             TTTTGTTGTGACGAT  88 44
   Spaf_0621  638743 ..  638766 + -10.4  -5.52384   TACCCGTCATAAAAA          GTTTGAGACA TGTT TGTCTCAAGC           TTTTTTTACTGCAAG 100 29
   Spaf_0622 NONE
   Spaf_0623  643269 ..  643294 + -13.3  -4.88222   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGCGTTTTAGT 100 186
   Spaf_0625 NONE
   Spaf_0626 NONE
   Spaf_0627  646565 ..  646581 +  -3.7  -2.82516   AGTCCTGCAACAAAC              CCAAGAA TTT TTCTTGA              TCTACTAGTAAAAGG  46 1
   Spaf_0628 NONE
   Spaf_0629  649606 ..  649622 + -10.1  -4.96848   ATTGTCAATTTTTAA              GCTCGCT CAT AGCGGGC              TTTTTGTATGAAAAC 100 282
   Spaf_0631 NONE
   Spaf_0632  650689 ..  650714 +  -8.9  -5.28826   TCTAAAGACAATTGA         GAGGCCAGGAC TTTT GTCCCAGCCTC          TTTTTTCTACCATTT 100 186
   Spaf_0634 NONE
   Spaf_0635  653163 ..  653180 +  -4.8  -5.40072   TAGACTAAGAAAAAA             CGGACC AGAATA GGTTCG              TTTTTTTGCGCCAAA  84 33
   Spaf_0636 NONE
        hsdR NONE
        hsdM NONE
        hsdS NONE
   Spaf_0640  660622 ..  660645 + -11.1  -5.38549   TTTGTATTCATCATC          CCAGCCAAA TCAACT TTTGGCTGG           TTTTTATTGTTTAAA 100 477
Spaf_igr0640 NONE
   Spaf_0641  662175 ..  662193 + -11.8  -5.24129   TTCGAATGATAGAAG             TAGAGGGA CCT TCCCTCTA             TTTTTTATCGAAAAG 100 70
   Spaf_0642 NONE
   Spaf_0643 NONE
   Spaf_0644  664325 ..  664350 + -13.3  -4.90296   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTGCAATTTT 100 182
   Spaf_0645  665603 ..  665624 +  -7.3  -5.64274   TTATGATTTATTGAA           GGTTGGAAA CTTT TATCCAACC            TTTTTTTCTCACTCC 100 164
   Spaf_0646 NONE
   Spaf_0647  666314 ..  666333 +  -7.9   -5.1101   GAAGCATAAGAAAAA            GCTGAGA CAAAAT TCTCAGC             TTTTTTAGATACTAA  93 32
   Spaf_0651 NONE
   Spaf_0652  671404 ..  671430 + -11.8  -2.77595   GCAGGGGAGGGAAAA         TTGAAAAGGTTT GGG GAACCTTTTCAA         ACTTTTTAATTTTAG  82 264
   Spaf_0653  672795 ..  672815 +  -6.9  -4.67942   CAATCATTCATCAAA            GATTGGACG TTT TGTCTAATC            TTTTACTTTATTCGC  81 181
   Spaf_0654  673719 ..  673744 + -16.3  -5.09521   TCCAAAAACAATTAA         TAGGCTAGGAC TTTT GTCCTAGCCTA          TTTTTGCTTTCTTAC 100 190
   Spaf_0655 NONE
   Spaf_0656  676965 ..  676987 + -16.4  -4.94902   TTCCTTAATCAAAAA           CACCGAGGAT TTG ATCCTCGGTG           TTTTTATCGTGATTA 100 346
   Spaf_0658 NONE
   Spaf_0659 NONE
   Spaf_0660  681283 ..  681295 +  -7.7  -3.80551   AGGTGGTGGCTAGGA                CTTGC GAA GCAAG                TTTCCTAGGTATTTG  72 134
   Spaf_0661  682912 ..  682933 +  -6.6  -4.96848   AAATAAAAGATGAAA           GCTAGAGT AGAAGA ACTCTGGC            TTTTTGTATAGGGAA  82 35
   Spaf_0662 NONE
       fabG2 NONE
   Spaf_0665 NONE
   Spaf_0666 NONE
   Spaf_0667  686602 ..  686627 +  -6.2  -4.90471   ATAATAAGGATAAAA         TGAGTCTAGT AAAACC GCTAGGCTCA          TTTTCTATTTTAGCT  80 50
   Spaf_0668 NONE
   Spaf_0669 NONE
   Spaf_0670 NONE
   Spaf_0671  688167 ..  688191 +  -3.5  -3.23219   GCATGAAATCTATAG          CCTCTTTCCTT TTT AAGGGATAAGG          TGTTCTAGCAATCTT  47 10
   Spaf_0672 NONE
   Spaf_0673  689169 ..  689191 + -11.3  -3.25479   TCCGTTATAGAACGA           GGCTGGGCA AAAAC TGTCCAGCC           TTCGATGTTTAATAG  80 31
        glmU NONE
   Spaf_0675 NONE
   Spaf_0676 NONE
        mtnN  692563 ..  692606 + -14.9  -5.60993   ATCTAATGATAGAAG TGGGACGAGGAATGAAGTT TGATTC AATTTCATTTCTCGTTCCA TTTTTTTCTGAAGCC 100 64
   Spaf_0678  693315 ..  693342 +  -9.8   -5.0538   TTTGATTAGGAATCA        GTTCCTCTGCTC GAAT GAGCAGAGGTTC         TTTTTTAGGCTGAAC 100 32
   Spaf_0679  695581 ..  695604 + -14.6  -5.92337   TGAAGATAAAAAAGT          CGGAGCCGTC ATGT GATGGCTCCG           TTTTTTTTAATGTCT 100 65
   Spaf_0682 NONE
   Spaf_0683  698183 ..  698204 +  -7.3  -5.72622   CCTATTAGTAGAAGA           GATTGGGCG AGCC TGTCCAATC            TTTTTTCTTTGTAAA 100 33
        pbpB NONE
        recR  700996 ..  701008 +  -2.7  -2.63596   TTCTTTCGAAAGGGC                TATCA TTG TGGTA                TACTATCAAGTAAGA  41 47
        ddlA NONE
        murF NONE
   Spaf_0689 NONE
   Spaf_0690 NONE
   Spaf_0691 NONE
   Spaf_0692  706496 ..  706519 +    -9  -4.94262   AATATGATTGAATTA          GACTAGAATC GACG GATTTTAGTC           TTTCTTTTTGCTCTC 100 40
        prfC  708256 ..  708269 +  -3.8   -4.3208   ATAGAAATAAGAAAA               CGGA AGCTTA TCCG                TTTTCGCTTATAAAG  61 69
   Spaf_0694 NONE
        corA  709664 ..  709677 +  -2.3  -3.47541   AGAAATCTCCGACGG               GAGAG AATA CTCAC                TACTTTTTCTTTATG  47 65
   Spaf_0696  711254 ..  711277 + -13.2  -3.32993   CAAATGGTAGAAAAA          GAGGCTTGGA GAAA TCCGAGCCTC           TTCGTATCTAAATAA  95 206
   Spaf_0697  712013 ..  712027 +  -2.8  -4.56597   AAGAAGTTTGATAAA               GTGG CTTCGCA CCAC               TTTTTAGAAAGAAGA  62 181
        deaD  713630 ..  713647 +  -7.7  -5.61596   AATAAGTCCTAAGGA             CGGTCTA GCAA TAGGCCG              TTTTTTTATGAAAAT 100 36
   Spaf_0699  714871 ..  714896 + -15.5  -2.79912   TTTTGTAAATGAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 33
        plsC  719375 ..  719391 +  -3.7   -6.4275   AAACAAGTAAAAAAA              TTGAGAG TTT TTCTCAG              TTTTTTTTATTTTTA 100 31
       comEA NONE
       comEC  722339 ..  722353 +  -2.1  -2.79831   TCCGCTAGAGATGAG               GAGAG GTTTG CTTTC               TATGCTGAAAATTGC  41 33
   Spaf_0706 NONE
        holA  724080 ..  724115 +  -6.2  -3.41602   TAAATACGAATGAAT    CGCAAGCAGATTAGTT GAAT AATTTAGCTGTTTGCG     TTATAATCAAGTCAG  59 38
        sodA  724775 ..  724804 +  -5.9  -5.97575   ATAATCCATAATGAA       TCTATAGGAACAG GTCT TTGTTTTTATAGA        TTTTTTTTGTGAATT 100 40
   Spaf_0709  726457 ..  726481 +  -2.9   -3.1268   TTTCTTTAAAGAAGA          GGGATATTTTT TTA AAAAATAAACC          GTTTTCCCCTTCTGA  45 41
   Spaf_0710  727609 ..  727629 +    -9  -4.90381   GAATAATCGACAAAA            GGTCTGAG GGTTG CTCAGGCC            TTTTATTCTATTAAA 100 35
   Spaf_0711  728439 ..  728458 +  -6.5   -5.9362   AAAGAGCTTTGAAGA            GATCAAC TAATTT GTTGATC             TTTTTTTATATTTTA  93 16
        arcA  729929 ..  729952 +  -9.6  -4.49316   AATAGAGAAGACCGA          GAGCTGGTCT TTGA GGATCAGCTC           TTTCTTCTTACTGAT  91 39
        arcB  731044 ..  731078 + -12.2  -5.24129   GTATACCAACAGCTA     TAGGGGCTGGACTG CTAGCTT TAGTCCTGCCCCTA     TTTTTTATAGAAAGG 100 53
        arcC  732079 ..  732097 +  -3.2  -2.91383   ACTAGTATTTTAAAG             CTTATTGT GAT AGAATAAG             TCTATAGGTAAGCGT  44 58
        arcD NONE
        arcT  735038 ..  735060 + -13.6  -5.33405   GCTACAACATAAAAA           GTTTGGAAAC TTG GTTTCCAAAC           TTTTTATTTACTAAA 100 29
        nagB  737669 ..  737680 +  -2.2  -3.78877   TACAAGTAATTATCT                GCTG GGAT TAGC                 TCTTTTCATCTACTG  49 108
       dacC3  739128 ..  739148 +  -8.3  -4.64157   AAAAATAAATAGAAA            CTCAACTGG TGA TCAGTTGGG            TTTTGTCGTTGTTTC  88 29
   Spaf_0722  740401 ..  740439 + -10.6   -5.6473   ACTCATAATCGAGAA  GTTGGATAGAAACACTG ATTTCA CAGTGTTT-TGTCCAAC   TTTTTTTGCTATTAT 100 62
   Spaf_0723  741126 ..  741143 +  -7.7  -5.54403   ATAAGATGGAGAAAA             GGTTGGA AATT TCCAGCC              TTTTTCTTATTTTTT 100 37
        coiA NONE
        pepF NONE
   Spaf_0726  744714 ..  744726 +  -3.3  -3.95214   AGAGACGGTAACCTT                GCCAG ATC CTAGC                TCTTTTTAGGTAAAT  55 4
        prsA  745759 ..  745772 +  -6.7  -3.54951   AAAAAATAGTTGACG               GTTCC TTTT GGAAC                TTGTATAATGAAATA  64 32
   Spaf_0728 NONE
        alaS  749278 ..  749305 +   -15  -4.36914   TCTCAAGAATTCCGA        GTGCTTGAGACT ATTA AGTCTCAGGCAC         TTTTCTCACGGCGGA 100 169
        pstH NONE
        ptsI  755534 ..  755557 + -12.6  -4.98917   CTAAGAGTCGAACAA          GACTAAGACA ATTC TGTCTTAGTC           TTTTCTTATATTTTC 100 37
        glgB NONE
        glgC NONE
       glgC2 NONE
        glgA  761550 ..  761563 +  -8.1  -5.41359   GAACTATGATACAAA               CGCCT TTCG AGGCG                TTTTTTGGTTTGCTT 100 44
   Spaf_0739  767564 ..  767588 + -15.1  -5.00616   TTAAATAATTGAATT          CTCTCATCTGC TGA GCAGGTGAGAG          TTTTTTAGAAGAAAA 100 33
        atpE NONE
        atpB NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG  772179 ..  772192 +  -5.9  -3.14963   TACCGAAATCGTTGC               GGGTG CTAG CGCCC                TTGAATAGTTGTCGG  58 4
        atpD NONE
        atpC NONE
   Spaf_0748  774455 ..  774476 +  -4.5   -2.8001   ATTGGCCAATTCTAA           CCACATTTT ATAA AAAATATGG            TATGATAGAAGTTGT  48 26
        murA NONE
   Spaf_0750 NONE
   Spaf_0751  776906 ..  776924 +  -2.4  -2.53831   CGTCCATCAATAAGC             TAGAAAGC ATG GCTATTTA             AGTTATTTTTAAGAA  40 28
   Spaf_0752  777730 ..  777753 +  -9.6  -5.53991   AATACTTTCTAAAAG          TTCTGAGCCT CAAG GGGCTCAGGA           TTTTTTTGATGGCTC 100 48
   Spaf_0753 NONE
   Spaf_0754 NONE
        mutR NONE
   Spaf_0756  782423 ..  782466 +    -6  -5.28176   GGGACAAAATGAAAA CCTCTTTCATGAACTGATAC AATA GTTTCAGAAAATGAAGGAGG TTTTTTATGAATCGA  89 84
   Spaf_0757  783666 ..  783679 +  -8.1  -5.36314   ATCAGCATGAAAAAA               GCACC AATC GGTGC                TTTTTTAGTCTTTTA 100 31
   Spaf_0761 NONE
   Spaf_0763 NONE
        glmM  789293 ..  789312 +  -6.4   -4.9792   GCTAAGATAAAAAGA            GATCGGAC TTCT GTCTGGTC             TTTTTGTGTAGGCTC  82 143
   Spaf_0765 NONE
   Spaf_0766 NONE
   Spaf_0767 NONE
        tdcF  791515 ..  791548 +  -5.9  -4.99043   TCAAAGACAAAAAGA     CAGAGTGGAGAGCAG GAAA CTGTAGGCCACTCTG      TTTTATTTATGGGAG  80 48
   Spaf_0769 NONE
   Spaf_0770 NONE
   Spaf_0771  794353 ..  794363 +  -8.2  -5.15969   TAGACAAATAAAAAA                 GGCC AAA GGCC                 TTTTTTAGATTGAAG 100 30
        rpsU  795987 ..  796000 +  -6.7   -5.7827   AATTGAATACAGGAA               CAGAC TTCG GTCTG                TTTTTTGTTTCTCTT  93 39
        dnaG NONE
        rpoD  799561 ..  799573 +  -9.1  -4.56597   ATAGAGGATTAAAAA                GGTCC GGG GGACC                TTTTTAACCCGAGCC  90 29
   Spaf_0778  800021 ..  800075 + -11.1  -5.40072   GTTAAAAATTCTATG CA-TCA-AAACAAATCAGAGGTTGGGG CTT CCCTAACCTCTGATTTGTTTATCCCTG TTTTTTTGAACAAGC 100 36
   Spaf_0779  800887 ..  800899 +  -3.4  -3.48506   CAATTCCGTGTTTAT                TAGG AGGAC CCTA                TGTTTGGTAAATTAT  50 23
   Spaf_0780  801704 ..  801742 +  -3.3  -5.80951   AATAATAACATGAAA  TTGAGCGAGGATG-TTCT AGTA AGAAATTTCCTTGTTCAA   TTTTTTATTTTGCAT  88 36
        dnaE NONE
   Spaf_0782  806511 ..  806525 +  -2.1  -3.44229   GACCTTGAACTTTCT               GCTTT GAACA AGAGC               TTGTCATAATCAACT  45 2
   Spaf_0783  808127 ..  808161 +  -7.9  -5.40464   AATTATATCTTAAAG    CCTTGCTGGTTGGTCC GAAA GGATTGACC-GCGAGG     TTTTTCTTTATACTA  95 46
       lepB1  808846 ..  808859 +  -6.7  -6.48081   ATAAAAGTAGAAGAA               TAGCC GAAA GGCTA                TTTTTTTTTTATAAA 100 23
   Spaf_0785 NONE
   Spaf_0786 NONE
   Spaf_0787  811208 ..  811235 + -15.8  -4.36914   TTTCAAAACTCCCGA        GTGCTAGAAACA TCAC TGTTTCTAGCAC         TTTTCTCACAACGGA 100 163
        pcrA  814991 ..  815011 + -11.9  -4.70046   AGAAATAAACTGAAA            CCAGTAAGC CTA GCTTGCTGG            TTTTGTCGTTTTATA 100 33
   Spaf_0790 NONE
   Spaf_0791 NONE
        hydD  817878 ..  817892 +   -10  -5.38321   CTTAAACTAAAAAAA               GCTGGA AAT TCCAGC               TTTTTTATGCTATTT 100 31
   Spaf_0794 NONE
   Spaf_0795  821219 ..  821240 +  -8.8  -5.35222   ACGAAACTGGATCAA           GGATTAGG AGCTTA CCTAATCC            TTTTTTCTAGCTTTT 100 19
        arsC NONE
   Spaf_0797  822074 ..  822086 +    -2  -2.56046   AGAGGAAGGATGGTT                TTCT CTTGA AGAA                TAAGTTAGAGTTTGC  40 10
        suhB NONE
   Spaf_0799  824160 ..  824174 +  -4.9   -3.6018   TTTTAGGTAAAATGC               TGGGC AAAGA GCCCG               TTCTATGATATATTG  57 64
        pstS NONE
        pstC NONE
        pstA NONE
        pstB NONE
       pstB2 NONE
        phoU  829223 ..  829244 +  -9.5  -5.40279   GTCTTTCCGATCTCA           GACAGGCAT TCTC ATGCTTGTC            TTTTCTTTTATTTTG 100 50
        pepN  832032 ..  832062 + -10.5   -5.2853   AATCCAAAAATAATT      GA-GAGGCTAGGAC TTTT GTCCCAGCCTCATC       TTTTGTTTTTCAATG 100 186
   Spaf_0809 NONE
   Spaf_0810  835981 ..  836008 +   -10  -4.84527   TATCCCTATAACAAA        AATCAACATCTG TGTT CAGATGTTGATA         TTTTTAATATATCCG 100 119
   Spaf_0813  837307 ..  837329 +  -8.4  -4.30576   GACAAATTCATAGAA           TTAGCCTTCC TCA GGCAGGCTGA           TTTTGATCATAAAAC  81 28
   Spaf_0814 NONE
        ciaH NONE
        gloA  839886 ..  839916 +  -7.5  -5.24129   GAGTAATTAAAAATA      G-GGGCCACTGCCG GTGA CGACAGTCGCCCTC       TTTTTTATGAAACCA  93 41
   Spaf_0817  841372 ..  841401 +  -7.3  -4.96523   AAATTAATGTAAAAA       TCCTCTGC-AGT TCAATTC ACTAGCAGAGGA       TTTTCTTATTCATTT  85 34
   Spaf_0820  844526 ..  844540 +  -8.6  -5.59357   AAAAGTGAGTAAAAA               GCAGAA AAC TTCTGC               TTTTTTTGCTATAAT 100 29
     cps19fM  845461 ..  845473 +  -5.5  -5.18995   TGATAATATAAGAAA                GGCCT TTC AGGTC                TTTTTGTGTTATATT  81 47
        matE  846938 ..  846949 +  -2.2  -3.41359   TGAAAAATTAATTAG                TACG TTTT CGTG                 TGTTAATTTTAAAAG  45 86
   Spaf_0823 NONE
   Spaf_0824 NONE
   Spaf_0825 NONE
   Spaf_0826  849817 ..  849834 +  -6.9  -4.88684   AAGTTTTTATAATAA             GCGGCTC TAAA GGGTCGC              TTTTCTGTTTGTATT  83 41
        rgpA NONE
        rgpB NONE
        rgpC NONE
        rgpD NONE
        rgpE NONE
        rgpF NONE
   Spaf_0833 NONE
   Spaf_0834 NONE
   Spaf_0835 NONE
   Spaf_0836 NONE
   Spaf_0837 NONE
   Spaf_0838  863270 ..  863290 + -11.1  -4.56117   ATACATCATGTAGTT            CGGGCCTGT TTT GCAGGTCCG            TTCTTTGTTTTTCTC  95 142
        infC NONE
        rpmI NONE
        rplT  864505 ..  864526 +  -9.5  -5.84381   AAATAATGTTTATAA           GGCTGAGAA GATT TTCTCAGTC            TTTTTTTCTTACTGA 100 35
       comEB  865268 ..  865299 +  -8.2  -5.02074   TGTCTGCTACTCTCG      GGAG-TGATATAGAT TGA AACTATATCAACTCC      TTTTTTAAAACATAG  95 226
        metK  866641 ..  866663 +  -9.2  -5.79588   AGTTGAAATGGAAAA           GTTAGGGTCA AGA TGATCCTAGC           TTTTTTTCGTTTTGA 100 43
       murA2 NONE
   Spaf_0845 NONE
   Spaf_0846 NONE
   Spaf_0847  870854 ..  870882 +  -4.6  -4.18668   AGAGAGGAAAGAATG       GAGCTGAAGGCAG GTGT CTGGTTTC-GCTC        TTTGCTCTTTTTTAG  63 46
   Spaf_0848  872040 ..  872065 +  -9.7  -5.62045   TTCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGTCTC          TTTTTTGTTATCTAT 100 177
   Spaf_0849 NONE
   Spaf_0850  873315 ..  873343 +  -7.6  -5.61881   AGAAGTTTAAAAGAA       TAAGGC-TGAAAC AATC GTTTCAAGCCTTG        TTTTTATTTTTAAAG 100 31
   Spaf_0852  874426 ..  874439 +  -8.1  -5.55664   ACAAAATAAGAAAAG               GGAGC CTTG GCTCC                TTTTTTTCATGCTAA 100 32
        ligA NONE
   Spaf_0855 NONE
   Spaf_0856  879833 ..  879862 + -12.3  -5.27335   TTTAAAGAAATCACA       AAATCCCTGAGTT TTTA AACTCAGGGATTC        TTTTTATTTAGAAGA 100 47
   Spaf_0858 NONE
        aroD NONE
        aroE  884941 ..  884993 +  -6.7  -3.11208   AATGAATATAGTCAT TTTATACATTGAAAAAAACAAGAC CCTTGT GTCTTGTTTTTTTCT-TGCATAAG TCCTTTTCAATGCAG  60 14
   Spaf_0861 NONE
        aroC NONE
   Spaf_0863 NONE
   Spaf_0864  888889 ..  888905 +  -5.1  -5.44721   AGAAGAATGAAAAAA              GGGGA AAGGTGA TCCCC              TTTTTTTACCCTCAT  88 40
   Spaf_0865  890332 ..  890349 +    -2  -3.18023   AAAAAATAAATGAGG             TGTTCT TATGTC AGAACG              TATTACTGGTCATAC  43 28
   Spaf_0866 NONE
        ydiM NONE
       aroD2  893204 ..  893251 +  -2.9  -4.82901   TTAGGATAAGACTTG GGAGGTGACACTTCTCTTCATACA TTA TGTTTGAAAAGAGG-G-C-CCTCC TTTTTATAGAGGAAG  65 32
   Spaf_0869  896194 ..  896219 + -15.5  -2.79912   ACTAAAATGACTAAT         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 36
       aroA1 NONE
        aroK NONE
        pheA NONE
   Spaf_0873  900447 ..  900474 + -12.2  -4.61873   AGATGATATAATAAG        GGGATAGGAGTTT TGA AAACTCC-ATCCC        TTTTAATTTGTAGAA 100 35
        trmA  902270 ..  902296 +  -5.9  -6.02546   ATATTTATATCTCAA         CCGAGAACTAT TCTAT ATGGTTCTCGA         TTTTTTTTCGTTTAA 100 435
   Spaf_0875  902647 ..  902660 +  -3.8  -3.34983   CTCCTAGTCTTAGTT               GGGA GGACAA TCCC                TATTATATCAATTGG  50 178
   Spaf_0876 NONE
   Spaf_0877  905244 ..  905255 +  -4.4  -3.84346   GAAGGTAACGATGAA                CAAG ATTA CTTG                 TATTTGTTTAGGTGT  59 125
   Spaf_0878 NONE
        araC  907080 ..  907108 +  -7.6  -2.97934   GCCGAGGTAATACCT        TTTAACGATAAC CTCAA GCTATCGTTAAA        TAGTTTAGTGGATAT  65 74
   Spaf_0880  908509 ..  908526 +  -5.7  -2.77104   TGGAAACATTATTGA             GAAAATT GACT AATTTTC              ATTATGTAATTCTGG  52 13
   Spaf_0881  909565 ..  909575 +    -4  -4.26202   TGCTCATATTATAAC                 GAAT TCA ATTC                 TTTATTAATACCTAT  61 87
   Spaf_0882  910551 ..  910566 +    -9  -4.51378   AAGGGATTGTAAAAA              GCCTTG AGGT CAAGGC               TTTTCTCGTGTACAT  90 322
   Spaf_0884 NONE
   Spaf_0885 NONE
        draG  914319 ..  914346 + -11.4  -4.88405   ACAAAAAACACCAAA        GCGACGAGAT AAGTAACA ATCTCGTCGC         TTTTGTTTAAAAGTT 100 60
   Spaf_0890 NONE
   Spaf_0891  917886 ..  917901 +  -3.2  -4.79667   TGTAGTATAATGAAG              GGAGTA GGGG TTCTCC               TTTTTAATAGATTTT  67 146
   Spaf_0892 NONE
   Spaf_0893  919947 ..  919965 +  -6.2  -3.32514   GTAAATAGAGGATTT             TAAAAAAT GAT ATTTTTTA             TTAAATTCTTCTCTC  59 509
   Spaf_0896 NONE
   Spaf_0897  922863 ..  922893 + -10.6  -2.72511   TTTATCCTTTTAATA       CTCAAAGTCAAAGA ATG TTTTTGGCTTTGGG       ATTTCAGAAAGTAGA  76 475
   Spaf_0898  924172 ..  924186 +  -7.1   -4.9792   TTAGATGATGAGAAA               GCCCA ATCGC TGGGC               TTTTTGTGTAGGGTA  85 52
   Spaf_0899 NONE
   Spaf_0900 NONE
   Spaf_0901  925132 ..  925146 +  -7.1   -5.1167   AACAAAGATCTTTAA               GCCCA ATCGC TGGGC               TTTTTGTGTTGCATT  90 135
   Spaf_0902  927063 ..  927092 +  -5.7  -4.83615   AAGAGCAGTAAGAAA       GAAGCCTGGAGTC GAAA GATTGTGGGCTTC        TTTTTATAAAAAGTA  75 30
   Spaf_0903 NONE
   Spaf_0904  928231 ..  928252 +  -7.3  -5.77571   GATAACTTTTTTTAG           CAGTTAACC CGTT GGTTGGCTG            TTTTTCTTTTTTAAT 100 73
   Spaf_0905  929368 ..  929379 +    -3  -2.73067   AGTTGTACTTTCCTC                TACA TAGG TGTA                 TAATGTGTCCTTAGA  41 129
   Spaf_0906  929785 ..  929825 +    -7  -5.80727   ACATTCCGTAAAAAA  GACAATATCAGTTTTCTG AATTC CAGAATTCTAATATTGTC  TTTTTTCTTATTTTT 100 83
   Spaf_0908 NONE
Spaf_igr0908  931593 ..  931610 +  -2.7  -2.74144   TCATCTGTAAAAATA             GAATCTA CGAT TTGATTC              CTTTAAAAATGAAAG  41 48
   Spaf_0909  932485 ..  932501 +  -2.9  -2.80113   ATGGGTTGATGCGGA              TTAGGGG ATG CTCCAAA              TCTAATAGAGTCATG  42 22
   Spaf_0910 NONE
   Spaf_0912  934117 ..  934127 +  -5.4  -2.84732   ACTTTAATTAAGAGT                 CCAT AAA ATGG                 TATAATCAGTTTAAC  52 86
   Spaf_0913  934912 ..  934925 +  -8.1  -4.39571   AAATATGACTTTGAA               GAGCC TTAG GGCTC                TTTTAACTTTGTCAG  86 48
        glpK  936757 ..  936782 + -13.3  -5.01546   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTATGTAGCTTT 100 201
   Spaf_0915  937834 ..  937865 +   -11   -4.4715   TCCATTAAGATGAAA      AAAGAGGTTGGGAT CAAC ATCCTAACCTCTTA       TTTTGTGCATTCACA  95 33
   Spaf_0919  940367 ..  940377 +  -5.4  -3.09933   AGTGGATGAAGCTAC                 TGCT GCG AGCA                 TTCAATAGCTTGAGA  53 7
   Spaf_0920 NONE
   Spaf_0921 NONE
   Spaf_0922  943320 ..  943342 +  -2.7  -4.72386   TAGTTTTGAGATAAA          GCTGAG-CTT ACAT ATGTCTCAGC           TTTTTGAATAGTTTA  65 43
   Spaf_0923 NONE
   Spaf_0926  944702 ..  944730 +  -4.6  -3.01905   GCAAATTAATGACAA       AGAGGCTG-GATC GATG GATTACAGCCTCG        ATTTATATCCAAAAT  50 32
       aroA2 NONE
   Spaf_0928 NONE
        rplS  946723 ..  946744 +  -8.7  -5.28176   GTTAAGACGAACAAG           GAGGCGGGA GTGA TCTCGCTTC            TTTTTTATCGGTCCC 100 36
   Spaf_0932  949709 ..  949721 +  -2.7  -2.66401   TTGAAGTAGGAGCTG                GATTT GAG AGATC                AGTTTATTGTTTTTT  41 32
   Spaf_0933  950795 ..  950820 + -13.3  -5.29716   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGTTATATTGG 100 190
        rpiA  954191 ..  954211 +  -3.2  -3.48378   GGTTTCTCTAAAGAG            GGGCCG GATCTAACA CGGCTC            TCTTCTTATAGGGAT  50 40
        deoB NONE
   Spaf_0940 NONE
        punA NONE
   Spaf_0943 NONE
        guaA  959253 ..  959283 + -10.7  -3.37935   TCGGAAAATAGATAA      TCTGACTGAGAAAT CAGG ATTTCTC-GTCAGA       TTCCTAATTTTCAGT  80 482
        deoD NONE
   Spaf_0946 NONE
   Spaf_0947  961692 ..  961717 + -13.3  -5.32944   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTTACTTATCAA 100 178
   Spaf_0949  964432 ..  964451 +  -7.8  -5.14563   GCTGATCATTTGTAG            GGCCTTGC TTTT GCGAGGTC             TTTTTTGCTGAAAGA  95 160
       pyrD2 NONE
        pyrD  966357 ..  966373 + -12.3  -5.60993   CTAATTTTCGTGTAA              CCTTGCC TCG GGCAAGG              TTTTTTTGTAGACAA 100 146
        pyrF  967186 ..  967210 +  -7.3  -2.82635   ATTCACTAGATCACA          GAAGAGAAA ATGATCG TTTCTCTTC          TGTGATCGTCGGAAT  61 103
        pyrE  968100 ..  968118 + -11.8  -5.38321   ATAAATAATATGACG             GAAGCGTT TTT AACGCTTC             TTTTTTATACTCTTT 100 33
   Spaf_0955  970323 ..  970348 + -13.3  -5.44119   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTTTCCAGTGGA 100 205
   Spaf_0956 NONE
   Spaf_0957 NONE
        pyrC NONE
   Spaf_0959 NONE
   Spaf_0960  974506 ..  974531 + -13.3  -4.36914   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTCTCACAGCGGA 100 244
        leuA NONE
        leuB NONE
   Spaf_0963 NONE
        leuC NONE
        leuD  979869 ..  979879 +  -2.6  -3.16217   ATACCGAATTACGAA                 TTTT CTG AAAA                 TATATTGAATTTGAG  45 50
   Spaf_0966  980740 ..  980761 + -10.9  -4.83169   TTAAGAAACAGAAAA           CAGCATTCC ATTT GGGATGCTG            TTTTTGTGAAAGGAT 100 37
        parE NONE
        aadK  984613 ..  984646 + -13.3   -3.2115   AACATTCTTTGAAAG     GAGTTTCACAC-GCCC TAA GTGCTGTGTGAAACTC     TTGATCCATCATTTA  95 118
        parC  987345 ..  987366 +    -8  -4.42806   TCAAATAAGAGAAGC           GTCGGTCC ATTCTA GGACTGAC            TTTCTTTGAAAATAA  82 33
        ilvE  988712 ..  988733 +  -7.4  -4.85599   CTGACCCACTCCCTT           TTCTCTTG CGTCAT CAAGAGAA            TTTTTGTAAAATAGA  83 203
   Spaf_0973  989280 ..  989303 +  -6.2  -4.56367   ATATCAGATAAGTGA          TAAAATATCT AACC AGGTATTTTA           TTTCTTTATAGGATG  76 305
        rpsA  990632 ..  990657 + -15.5  -2.79912   TTGTAATATTCAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 35
        gyrA NONE
        srtA  995852 ..  995874 +  -5.5  -5.03994   CTTTAAGAAAATAAA          GCCCAAGGCA GAGA TGCCG-GGGC           TTTTTCTATGTAGGA  78 35
   Spaf_0979  996349 ..  996361 +  -4.9  -3.10244   AAGTGAGGAGGAAAT                TATGT ACG ACATA                TCATTTATTGAACCA  52 79
        radC  997187 ..  997212 + -13.3  -4.89393   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTACCATTTG 100 179
   Spaf_0988 NONE
   Spaf_0989 NONE
   Spaf_0990 NONE
        rluD NONE
   Spaf_0992 1006593 .. 1006625 +   -10  -4.76874   ATTAATTTAAGTAAA      GGATTTAGTTCTGT ACTGC ACGGGACTAAGTCC      TTTTAGTTTTGTCTT 100 244
   Spaf_0995 1009361 .. 1009386 + -13.3  -2.97403   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          AATTTTTTTATAAAT  93 173
   Spaf_1002 1015523 .. 1015550 + -13.6  -4.49937   CTAGATATCTAAAAA        CAACTTCTGTTC AAAT GAGCAGAAGTTG         TTTTGGTCTTATTAA 100 44
   Spaf_1004 1017725 .. 1017747 +  -9.8  -3.88998   CAAGCATAGAAGGAA           GGCTGGACAG TTT TTGCCCAGCC           TCTTTTAGTTTAGAT  85 183
   Spaf_1006 1020247 .. 1020269 +  -7.1  -5.42259   AGGTAATATTAGAAA           CTCTAAAGT TTTGT GCTTTAGAG           TTTTTTTGAAACTAG  95 39
       ccdA2 NONE
   Spaf_1008 1021672 .. 1021710 + -13.5  -4.36343   ATCATCAAGGAGTTA   CAATAAAAAAATGAAGC ACGAG GCTTCATTTTTTTATGG   TTTCTTAGTTGCTTG 100 45
   Spaf_1013 1026149 .. 1026171 + -11.4  -5.82281   TGAATCAATGAAAAA           CAAAGCTAGC GGT GCTAGTTTTG           TTTTTTTCTGTCTTT 100 41
   Spaf_1014 NONE
   Spaf_1015 NONE
   Spaf_1016 NONE
        pbrT NONE
        tatC NONE
   Spaf_1020 1032765 .. 1032788 +  -2.5  -5.95946   TTAATAAAGAAACAA          TCCATTTCAC CCCAA GTGAG-TGGA          TTTTTTTCTTATTCA  93 234
   Spaf_1022 1033827 .. 1033858 +  -5.8  -2.60032   AAGGAAACGTCAAGA      GACGTAGCGATGCG CTTG CGCATAGGTAGGTC       AGTTTTTAGAAAAGA  54 148
        guaC 1034977 .. 1034993 + -10.1  -5.32599   CTAGAGAGATTTCAA              GGCTTGC TTA GCAGGCC              TTTTTGTGTTTTGTG 100 132
   Spaf_1024 NONE
   Spaf_1025 1036901 .. 1036922 +  -8.7  -5.61824   CTAATCTCACATGAA           CCGGAGGTC CTTG GATCTTCGG            TTTTTTTGACTTTTA 100 37
   Spaf_1026 1038350 .. 1038365 +  -6.8   -4.9792   ACAAACTAAAATGAA              GTCTGG GAAA CCAGGC               TTTTTGTGTACCGTG  82 32
       ilvD2 1040194 .. 1040230 + -13.2  -5.14563   AGAAAAATAAAAAAA   GCCTTTCCTGCTATGTG ATAT CACA-AGCAAGAAAGGC    TTTTTTAGTGGAACC 100 31
   Spaf_1029 NONE
        prfA NONE
        hemK NONE
        sua5 NONE
        glyA 1044951 .. 1044961 +  -5.4  -2.64144   TTTATGAGGACTAAA                 CCAT CCT ATGG                 ATATTTACGTAAAAA  51 27
   Spaf_1034 NONE
   Spaf_1035 1046547 .. 1046560 +  -8.1  -5.17576   TAATCATTTTCCAGA               GAGCC GATT GGCTC                TTTTTTAAATTGATC 100 38
   Spaf_1037 1048006 .. 1048018 +  -9.1  -6.09888   GGCTCGTAAAAAAAA                GGTCC ACT GGACC                TTTTTTTTATTCCCA 100 248
   Spaf_1040 1050582 .. 1050592 +    -4  -5.77853   ATTTTTATTATTTCT                 TCAA TTT TTGA                 TTTTTTTTACGAATT  85 193
   Spaf_1041 NONE
   Spaf_1042 NONE
   Spaf_1043 NONE
   Spaf_1044 NONE
   Spaf_1045 1055940 .. 1055960 +  -7.5  -5.23316   TCAAAAAGCATCAAG            TCCCGCTAG TCT TTAGCGGGC            TTTTTTGATATAATG  93 64
   Spaf_1046 NONE
   Spaf_1047 1057945 .. 1057965 +  -5.4  -4.17762   TCTTTCTAATAAGGG            CCTGGAAC ACACC GTTCTGGG            TTCTTTTAGAAAATA  65 42
   Spaf_1049 1058768 .. 1058789 +  -5.3   -5.4433   GAATCTATAAGTAAA           TTACATAAT TTCG GTTATGTAA            TTTTTATTTGTCTCT  88 31
   Spaf_1050 1059870 .. 1059894 +    -8  -4.90381   AGAGAAGAAAAACAA          TCAGTAAATC CATGA GATTTGCTGA          TTTTATTGTGTTAAA  89 44
   Spaf_1051 NONE
   Spaf_1052 NONE
   Spaf_1053 1061087 .. 1061099 +  -2.7  -4.21194   ACATTATATTTAGAC                TGAAT AAT GTTCA                TTTTGAGTGCTAAGA  57 28
   Spaf_1054 1062601 .. 1062616 +  -4.8   -3.7941   TTGATGAACGAGTGG              GATTAT CTTA ATAATC               TTATTCTAGGAGATC  59 524
   Spaf_1055 1064205 .. 1064237 + -12.9  -4.82756   TTAATATTAGAATAA      GAGCGTAAGATTTAT TTA AGGAATCTTACGCTC      TTTTATTAATTATAT 100 67
        nisR NONE
        nisK 1107023 .. 1107046 +  -7.4  -5.48163   AATTGATAAGCACTT          CCGCCATCTT GTTT AAGGTGGCGA           TTTTTTCATTTGTTT  95 328
        sboR NONE
        sboK 1121855 .. 1121882 +  -6.4   -5.6473   CAATTAGGCAAAAAA        TGGAGAAGAACCC TCA GAGTT-TTCTCCA        TTTTTTTCATCTTAT  93 34
   Spaf_1162 1167913 .. 1167923 +  -6.8  -5.43553   AATCTCTCCCTGCCA                 CAGC TTG GCTG                 TTTTCTTTTTTCGGT  91 248
   Spaf_1173 NONE
   Spaf_1174 NONE
        pepT 1179830 .. 1179854 +  -8.6  -4.35604   ATAAGAAACAAAAAA          GGATTCGGAT TGATT GTCCGGATCC          TTTATTGTAGATTAG  83 37
   Spaf_1195 NONE
   Spaf_1196 1199677 .. 1199700 +   -14  -5.40072   CGATTGATTCCTGAA          GCATCTAGCA ATTT TGCTAGATGC           TTTTTTTGACGAAAA 100 52
   Spaf_1204 1209610 .. 1209633 +  -8.3  -5.42975   AACAGATTTAAAAAA          TATTCCTGA CGCTTC TCAGGAATA           TTTTTATTTATGTGA 100 113
   Spaf_1205 1210319 .. 1210340 + -13.7  -2.89565   TTGAACAAAGTGAAA           GCCAGCGTC TTTA GGCGCTGGC            TAGTTATCTGGGCTT 100 89
   Spaf_1207 NONE
      hlyIII 1212321 .. 1212336 +    -9  -5.77632   TATGTAATACTGTTA              CCACTC TTCA GAGTGG               TTTTTTTGTGATTTT 100 34
   Spaf_1209 1213660 .. 1213700 + -21.5  -4.26351   TGACGCCTTTTTTTG  CAAGAGAAACCCTCGTATA GAT TATACGAGGGTTTCTCTTA  TTTCTTCCATTGCTC 100 6
        coaA 1228452 .. 1228467 +  -2.6   -2.8169   GGCCTTTTAACGGTA              CTTTTT TAAG GAAAAG               CTATTTTAGGCTTGT  42 48
        rpsT 1228797 .. 1228808 +  -5.8  -5.84381   CAGCATAAAAATCAA                GCTC TCCG GAGC                 TTTTTTTGTTCCTAA  93 48
        flaR 1229803 .. 1229824 + -13.1  -5.05116   TTGTCTACATTTTAA           GGTTGGGAT ATCT ATCCCAACC            TTTTCTTATTTATCA 100 478
   Spaf_1244 1247646 .. 1247663 +  -5.6  -5.50925   ATTTTCAATTTGAAA             GATTGG CCAAAA CCAATC              TTTTTTCTATTCCTT  88 461
        ppdK 1272757 .. 1272777 +  -8.3  -5.09245   TTATAGCAAATCCTC            GATCAGGTC ATC GACCTCATC            TTTTTCTGCTTTTGG 100 306
   Spaf_1272 1275755 .. 1275776 +  -7.3  -5.88197   GAACCAACTAAAAAA           ACAGTAAGG ACAA CCTTACTGA            TTTTTTTATCTTTCG 100 30
   Spaf_1285 1287647 .. 1287672 + -13.3  -4.68103   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTGTTAGAGTTCC 100 180
        degV 1289903 .. 1289928 + -15.5  -2.79912   AGTTACCACTAAAAT         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 40
        amyA 1298924 .. 1298954 +  -9.9  -5.58454   CCTTTATATATGATT       TTCTCCTAGGA TCTACATCT TCCTAGGAGAA       TTTTTTTCCTGTAAA 100 41
   Spaf_1310 1316502 .. 1316527 + -13.3   -5.5762   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTTATATTTAAT 100 259
   Spaf_1322 1332450 .. 1332469 +  -5.2  -4.92756   ATATCGCAGCAAACA            TAAAATTT AGTA AAATTTTA             TTTCTTTTTACTAGT  76 16
        galR NONE
        birA NONE
   Spaf_1325 1336425 .. 1336462 + -20.1  -4.09685   TTATTCAAACATAAA   GGAGCGAAATAGCCC CAAAATAC GGGCTATTTCGCTCC    TTTTCGAGAGTGGGA 100 149
   Spaf_1335 NONE
   Spaf_1337 1350016 .. 1350053 +  -8.7  -5.33124   CTTTTAAAACAAGAA   AAAAACCTTTGAAAAAA GATT TCTTTTCAAAGGTTTTA    TTTTCTTTTCTTCTT 100 34
   Spaf_1347 1359595 .. 1359611 +  -6.6  -5.59357   GGCTAAAAAAGAGAA              CTTCCT ATATA AGGAAG              TTTTTTTGATATAAT  93 35
   Spaf_1348 1360611 .. 1360650 + -14.6  -5.03314   CTTGCAGTCCTTTCA  GACTGAAGAAAA-AGTCCA TTT TGGACAATTTTCTTCAGTC  TTTTTTAAAAATAGA 100 98
   Spaf_1358 1370955 .. 1370977 +  -4.2  -5.00136   CTATAAATGAAAAAA          CTAGCGCCT GATGAA AGG-GCTAG           TTTTCTGTTTTATTT  74 35
   Spaf_1374 1383591 .. 1383608 +  -8.3  -5.52384   CTAATCATTCAAAAA             GCCCCGG AAAA CCGGAGC              TTTTTTTGCTGAAGA 100 37
   Spaf_1379 1391861 .. 1391896 +  -7.8   -5.2291   ATAAGCGTAAAAAAA    GATAAGAATGATATTT GAAT AAACATCATTCTTACC     TTTTTCTTATGGTAT  93 37
   Spaf_1401 1410005 .. 1410030 + -15.5  -2.79912   TCCTTAAATTCAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 41
        feoA NONE
        feoB 1413075 .. 1413114 +  -8.6  -4.78149   TCAGTAAGTTTTATA  TAAGCAAGAGGCTGGGAC AAAA GTCCTAGCCTCTCAATTA   TTTTTGGATTGTCGA 100 190
   Spaf_1409 1421417 .. 1421435 + -13.2  -4.16943   ATTTCAAAAATAAAA             GGTTGAGC GAC GCTCAACC             TTTTAGAATGTAGAC 100 40
   Spaf_1413 1426040 .. 1426051 +  -2.2  -4.88407   TCTATGTTCCAGAGG                CCGT TTGT ATGG                 TTTTTCATTAAGTCG  64 3
   Spaf_1414 1426351 .. 1426374 + -11.1  -5.28942   GTTCTAATAGAACTA          CTCCTCAAC ACTTTA GTTGAGGAG           TTTTTGTTTGAGCTG 100 34
   Spaf_1416 1428421 .. 1428451 + -14.9  -5.41359   TTAGCTAAAGAAAAA       CCAATGGAAGGGA ACATC TCCTTTCCATTGG       TTTTTTAGTTTGCTT 100 33
   Spaf_1427 1440916 .. 1440931 +  -7.6   -4.9755   AAAGTAAACAAAAAA              GCAAGT GCGA ACTTGC               TTTTTAATTATATCT  89 72
   Spaf_1431 1444886 .. 1444901 +  -3.2  -5.88197   TTACCCGCAAAAAAA              GCCATC CAAA GATGAC               TTTTTTTATGTTTAA  88 189
   Spaf_1434 NONE
   Spaf_1435 1450392 .. 1450405 +  -3.1   -2.5294   CTGGCGTTGCATATG               CCATT AGAA AGTGG                GTATTATAAAAAATG  43 3
   Spaf_1436 NONE
   Spaf_1437 1452897 .. 1452923 + -16.8  -2.61264   CCCACCCCCGCATAG         CTTCAACAGTCT GGG AGACTGTTGAAG         ATTGTGGATAAAGGA 100 112
   Spaf_1442 1460746 .. 1460778 + -12.1  -4.98672   CTCATAGCCTTAAAA      CAGCAGATCAAGTGA TCT TCACTTTTTCTGCTG      TTTTCTATTTTTAAA 100 34
   Spaf_1444 NONE
        ebsC NONE
       pgaM4 1462003 .. 1462022 +  -6.5  -5.13343   TGGAAGACTAAAAAA            CACTGAT CTTGCA ATCAGTG             TTTTCTTTTAGCTTA  86 30
   Spaf_1452 1468654 .. 1468679 + -13.3  -5.56573   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTTTGTTTAT 100 182
   Spaf_1456 1471364 .. 1471381 +    -7  -5.89921   TCGCCCAACAAAAAG             GAGAGG TTTAAC CCTCTC              TTTTTTTGTTATACT 100 15
   Spaf_1459 1474127 .. 1474140 +  -6.7   -5.9218   CGAAAAAAATAAAAA               TCAGG TTTG CCTGA                TTTTTTTATTATGTG  93 29
   Spaf_1460 1474827 .. 1474848 + -13.7  -2.89565   TTGAACAAAGTGAAA           GCCAGCGTC TTTA GGCGCTGGC            TAGTTATCTGGGCTT 100 89
   Spaf_1468 NONE
   Spaf_1469 NONE
   Spaf_1470 1483392 .. 1483415 + -11.1  -5.02502   CTTAAACCCATATAA          GCTAGAACG CTCCTT CGTTCTAGC           TTTTTCTATGCTGTC 100 68
   Spaf_1471 1485008 .. 1485021 +  -8.1  -5.64006   AAGAATTAAGGAAAT               CCACC TTCG GGTGG                TTTTTTTGATTACGT 100 32
        pepQ 1503330 .. 1503370 + -17.2  -4.47328   GGACAAAATGAACTG  CACCCCAAAAGTTAGA CAGAAAAAA TCTAACTTTTGGGGTG  TTTTATAATGAAATT 100 128
   Spaf_1486 NONE
   Spaf_1487 1504842 .. 1504857 +  -4.7  -3.54459   AGCCTTCTTTCAAAA              GAGGT CATATA ACCTC               TTTGAAAGAACTTAG  57 141
   Spaf_1488 1507290 .. 1507317 + -12.9  -5.18726   GATCTCAGCAAAAAA        GATCGAAGAAG GTTACA CTTCTTCGATC         TTTTTCTTATGAAAC 100 239
   Spaf_1493 1514152 .. 1514170 + -14.6  -3.86015   TTTATCAAATCATGA             CCACCCGT CAA ACGGGTGG             TTTGTACCAGGGCTA 100 26
   Spaf_1495 1515874 .. 1515888 +  -2.8  -3.53012   CACAGTTCATAATGG               CGGGAA GGT TTTTCG               TTTACAGAAAAAAAC  48 108
   Spaf_1510 1532908 .. 1532941 + -14.1  -5.00467   TTAATATCTAACATT     CAAAAGGCAAAGATC CGAT GATCTTTGCCTTTTC      TTTTATTCTTCTTCC 100 37
   Spaf_1515 1535612 .. 1535622 +  -5.4  -3.21593   GGTTCAATGGTGTCT                 CTAC TCC GTAG                 TATTCTACGAAAATA  53 438
   Spaf_1521 1538396 .. 1538415 +  -7.2  -5.96219   TCTAATACCAAAAGA            CAACTCTA TCTT TGGAGTTG             TTTTTTTTATAAATA 100 36
        ppiA 1547720 .. 1547737 +  -9.9  -5.20783   AAAAAATAATGAAAA             GAGAACC TCGC GGTTCTC              TTTTTGTGTTTACGT 100 32
   Spaf_1537 1554835 .. 1554889 + -14.9  -3.25604   AAACAACCCATTACC CGTTAATAGAAAAAATAAGGTTAGAT TTTC ATCTAGCTTTGTTTTT-CTATTAACG ATTTTCCTTAGGTGA 100 20
       murE2 1571345 .. 1571373 +  -8.9  -5.61596   TTATAATCAAACGAA        ACAAGGCTAGGAA GTT TTCCTAGCCTTTA        TTTTTTTATAAAAAT 100 35
   Spaf_1556 1575015 .. 1575044 +  -7.9  -3.14132   ATTTGGACCAAAACA       GGATCATGGTC-TG ATG CACGACCGTGTTCC       TTCATAAAGGAAGCA  63 389
        treR 1582091 .. 1582116 + -15.5  -2.79912   GTCATCAATCTGAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 482
   Spaf_1569 1590979 .. 1591003 +  -5.8  -4.77986   TCCTATAACAAAATA          GTGCTAAG ACAAATGAG CTTAGCAC          TTTTTAAATCTTTAA  78 41
   Spaf_1571 NONE
   Spaf_1572 1595753 .. 1595783 +  -6.8  -3.71607   GTGGTGTTGGCGGTG       TCACCGGTGGTGTT GGT GGTGTCACCGGTGG       TTTCGGTGGTGTTAC  65 285
        trkA NONE
        trkH 1610287 .. 1610315 + -13.4  -4.52349   CTCTTGTACAAAAAA        TACCCTTAGAAA CATAA TTTCTAAGGGTA        TTTCTGTTTATTTGT 100 48
        acyP NONE
   Spaf_1600 1621162 .. 1621187 + -13.4  -5.19261   AGCGGAATTACTTAA         GCACCTGAAC CCTCTA GTTCAGGTGC          TTTTTTAATCCCTTT 100 59
   Spaf_1601 1623171 .. 1623183 +  -9.1  -5.27335   TCACTATCGACGATT                TCCGC ATA GCGGA                TTTTTGTTTCCAAAC 100 495
   Spaf_1621 NONE
        rggD 1645691 .. 1645711 +  -9.8  -5.07486   AATAAATCCTAAAAA            CTCACAGA TCTAC TCTGTGAG            TTTTTGTTGAAAATA 100 29
   Spaf_1623 NONE
   Spaf_1625 1647466 .. 1647481 +    -9  -5.91981   TGTCTTCAATCTGAA              TCCACC GTTT GGTGGA               TTTTTTTTACATTTT 100 303
        gidB 1649760 .. 1649799 +  -8.6  -4.78149   CCAAGCGGATAAAGT  CAAATAAGAGGCTGGGAC AAAA GTCCTAGCCTCTCAATTA   TTTTTGGATTGTCAA 100 55
   Spaf_1662 1677816 .. 1677837 + -11.7  -4.70659   TGTAAGAAACAAAAA           GTTTGGAAC TTCT GTTCCAAAC            TTTTTGAATGTAGAA  95 36
        ansA 1681130 .. 1681169 +  -7.2  -5.30339   AAATACAATCTTAAA  GGGAGTAGACTGG-AATCC AAA GAATTTCCTCTCTACTCCC  TTTTTATATTTTAGT  95 174
   Spaf_1676 1694046 .. 1694067 +  -5.9  -5.66868   CTACAATGAAAAAAA           CACTAAGAT TGTA ACCTTAGTG            TTTTTTTAGTTCCTT  91 32
        scrB NONE
        scrR 1701871 .. 1701898 + -12.8  -5.00616   AGTGTCTAAAAGCAA        TATCCCCTCAGT AGAA ACTGTGGGGATA         TTTTTTACCAAAAAA 100 32
   Spaf_1692 1708574 .. 1708586 +  -3.4  -3.30441   TGTCGTCTACCTCAT                CCAT AAAAA ATGG                TTCTAACACCTACTA  48 7
   Spaf_1694 1709306 .. 1709324 + -11.8  -5.52079   GACGTTAAAAAGAAA             CGGATGAA GTT TTCATCCG             TTTTTGTTTTACTGT 100 33
   Spaf_1697 NONE
Spaf_igr1697 NONE
   Spaf_1698 NONE
   Spaf_1699 1714423 .. 1714447 +  -6.4  -5.51046   GACATCACATTAAAA          GACGATTTCC ATTTC GGAAGTCGCC          TTTTTTGTATATTTC  93 39
   Spaf_1705 NONE
   Spaf_1706 NONE
   Spaf_1707 1719105 .. 1719158 + -14.1  -4.64144   GGATGATTTCCTATA AAATACTCAAAAACGAGCAGTTCTA TGTA TAGAACCGCTCGTTTTTGAGTAACA TTTTTGCAACTTATT 100 145
   Spaf_1714 1734163 .. 1734175 +  -4.9  -5.08255   GTAAGAAAAATATTC                TTTGA ACG TCAAA                TTTTATTTTCCCACT  79 21
        hutU NONE
   Spaf_1717 NONE
   Spaf_1718 NONE
   Spaf_1719 NONE
   Spaf_1720 NONE
        adiC 1743151 .. 1743162 +    -3  -3.65214   GAGCCCTTTTCTCTA                TGAA TCTT TTCA                 ATTTTTTAGATCAAT  50 130
        hutH 1744824 .. 1744855 +  -4.4  -2.90615   TAAAGATAAAGCAAA      AACAGAGGCTGGCGA TCT TC-TCAGCCTCTGCC      TGCTTTCAGAAAAAT  48 46
        hutG 1745903 .. 1745937 +    -8  -5.28166   CTACACACATAAAAA     GCATAGAAACACTC ATTGCTA GGGTATTTCTATGC     TTTTTCTTCGTTTTC  95 49
   Spaf_1728 1754611 .. 1754635 +  -3.5   -3.0792   TGGAGCAAGAAACGG          TGCTGTCTCTT TTC AGGAAGCAGCG          TTAGATCACCTGTTA  45 333
   Spaf_1738 1760948 .. 1760972 +  -2.9    -2.649   CCGTAATTCAGGGTC          TGCAGGT CTATAAAAATC ACCTGCA          ATCATTTTTTCATAT  41 179
   Spaf_1741 1761896 .. 1761909 +  -5.3  -3.68024   CCTTAAACAAATCGG               TAGTG AAAC CACTA                TTCTATATTAGGAGG  60 1
   Spaf_1742 1762813 .. 1762840 +  -6.4  -4.96646   TACTAACTAAAAAAA        TTCTAGTGGATT TGAG ATTCTACTAGAA         TTTTTCATTATCTGA  82 97
   Spaf_1746 1766021 .. 1766044 +  -7.5  -6.38655   TCAAACCTTATCACA          GCC-CTCGTA ATCCC TACGAGAGGC          TTTTTTTTTATCTTT 100 64
   Spaf_1750 1770055 .. 1770077 +  -6.3  -3.33361   TTGGAGATTCTGAAA           GTGGGTTCT AACTA AGAACCGAC           TTCATATCATTCATC  59 11
   Spaf_1751 1770442 .. 1770476 + -14.6  -3.61641   TTAGCCTTGTTATAA     GAAAAGCTCAAGTTTT AAA AAAACTTGAGCTTTTG     TATTTGCTATTTGTT 100 26
        hsdD NONE
       hsdD2 NONE
   Spaf_1758 1773417 .. 1773436 +  -4.3  -3.09327   ATTCCCGTGGACTGC            CGGCGAAG CCAAA CTTC-CCG            TGTTCCATAACATAC  49 256
   Spaf_1762 NONE
        pabB NONE
   Spaf_1766 1780408 .. 1780432 + -12.3  -5.42862   TTAGTCTTAAAGTCA          CGGCTAACTTT TTA AAAGTTAGTCG          TTTTTTTAGAAATAT 100 402
   Spaf_1767 NONE
   Spaf_1768 NONE
   Spaf_1769 1782259 .. 1782279 + -15.5   -5.5353   GATTTATAACAAAAA            GGCTTGAGC ACT GCTCAAGCC            TTTTTTCTTAGTGTA 100 32
   Spaf_1777 NONE
   Spaf_1778 1796518 .. 1796541 + -11.8  -3.68023   ACAAGTAAAAAAAGA          GTCTGGAGCA CTGT TGCTTCAGAC           TTACTTTTCAACATT  91 33
   Spaf_1779 NONE
   Spaf_1780 1798936 .. 1798961 + -13.3  -4.62783   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTAAGATCAATA 100 185
   Spaf_1785 1805142 .. 1805181 + -13.1  -3.62597   CAGACAGACACCACT  CAAAACAGATCGGA-CCA ATGAA TGGCTCCGATCTGTTTAG  TTGTTAGAACGTAAA 100 97
        gdhA 1822947 .. 1822972 +   -12  -5.64274   GTCAAAGCCTCTCAA         CTCCTGAAAC CAGTGT GTTTCAGGAG          TTTTTTTGTAGCTAC 100 71
   Spaf_1803 1823510 .. 1823529 + -10.8  -5.47159   AAATAGACCAAAAAA            GCTCAGAA AGGT TTCTGAGC             TTTTTTGTGTTAAAA 100 35
        sstT 1827717 .. 1827752 +   -12   -5.0538   CCTATCTCAAATAGA    CAAGAAAACCCAGACC TCGC GATCTGGGTTTTCTTA     TTTTTTAAAGTAGCG 100 46
        rnhC NONE
       lepB2 1836242 .. 1836265 +   -11   -3.6053   AGATCAACAGACTGA          GGCTGAGACA AGTA TGTCCCAGCC           TTGCTTTATAAAAAG  84 44
        recD 1838938 .. 1838963 +   -12  -5.16841   TTGTCATCAATCTCA         GACGACTAGT GAATAG ACTAGTCGTC          TTTTTCTTCCTCTAC 100 240
       pflD2 1842658 .. 1842675 +  -9.1  -5.67967   AAATAGATGAAAAAA             CCAGTCG GAAA CGGCTGG              TTTTTTTATCCTCAT 100 46
   Spaf_1818 1842961 .. 1843009 +  -9.2  -5.23316   TAAACGAATTCATAA GGACAAGAAACA-AACTAGAATT GTCA AATTTTAGTTCTGTCTCTCGTCC TTTTTTGCTATAATA 100 70
   Spaf_1819 NONE
   Spaf_1820 1844633 .. 1844648 +    -9  -4.92783   CATAAGAGTTGAAAA              GCCATC TAAG GATGGC               TTTTTCTGATAGATT 100 374
        pksG NONE
        hmg1 1847530 .. 1847553 + -12.6  -5.63517   GTTTACATTCTAAAA          GAACTAAGAC GCAC GTCTTAGTTC           TTTTTTGTTTGAAAA 100 312
        pepX NONE
   Spaf_1834 1860551 .. 1860572 +  -9.4  -5.18371   TTCCGTCGATAATCT           GGGGCTGG ATCCTA CCAGTCCC            TTTTCTTTTCTACCA 100 29
        dnaQ 1861349 .. 1861374 + -13.3  -4.30014   TCCAAAAACAATTAA         GAGGCTCGGAC TTTT GTCCCAGCCTC          TTTTGAGTTGATGAA 100 180
   Spaf_1853 1876555 .. 1876565 +    -4  -3.99436   AAGAAAACAAATAAA                 CTAA AAA TTAG                 CTTTTTTGTTTGATA  56 27
   Spaf_1854 NONE
   Spaf_1855 NONE
   Spaf_1856 1878809 .. 1878824 +    -9  -3.73756   TATAAATAATTGTAT              GTGGAC AGAT GTCCAC               TATTTTAATACAATA  78 49
   Spaf_1857 NONE
   Spaf_1858 1880571 .. 1880600 +  -5.9  -5.54907   ACTGAATTAGAAGCA       TAAAGTACATTCT TTAA AAAGTGTACTTTA        TTTTTGTTTTGTACA  91 144
   Spaf_1859 1881893 .. 1881918 + -13.5    -4.208   GGTTTTTAACAAAGA         GTCTTCTAGTA TTTG TACTAGAAGAC          TTTCTACTTTTAGAA 100 32
   Spaf_1861 NONE
   Spaf_1862 1884723 .. 1884746 +  -6.1  -5.12617   GTCAAGTGTAACAAA          GTTGTTTGA GTTCGA TCAAACAGC           TTTTTTAGGTGGTTA  83 85
   Spaf_1863 1885317 .. 1885355 +  -6.9  -4.78237   CCTTAAAATTGATAA  CACCCCAAAAGT-TAGAT TTCC ATCTATACTTTCAGGGTG   TTTTCTTATAACCTA  83 56
   Spaf_1866 1889347 .. 1889385 +   -12  -3.41075   AAACGTTAAATAACC   TGTAAGGCTGATAGTG AAATTAA TACTATCAGCCTTATA   ATTTTTCCATGGTAT  89 67
   Spaf_1867 1891196 .. 1891221 +  -9.1  -4.41353   AATTAAAAGAAAAAA         GCCTTTGAAAT GCTG ATTTCATAGGC          TTTTAATATATCTAA  90 73
   Spaf_1877 NONE
        glpF 1902510 .. 1902538 + -10.4  -5.40014   TAATCTATCTAAAAA        AACGAACTCGAT TTTCC ATCGAGTTCGTC        TTTTTATTGTTCTTT 100 38
   Spaf_1889 NONE
   Spaf_1890 1911178 .. 1911203 + -12.7  -4.55673   AAAATTAAAAAACAA         CCAGTTGAGAC CACT GTTTCAACTGG          TTTTATGGTGTCTTT 100 33
   Spaf_1895 1916107 .. 1916130 + -15.4  -5.42259   CAAAATAAGATCAAA          CCTCTCTGGT TTTC ACCAGAGAGG           TTTTTTTGAGAGTGA 100 47
   Spaf_1911 1933305 .. 1933348 + -22.2  -4.75219   CGTCCTTTCCTTCTA TAACAGAAAAGACATGAGTT ATGA AGCTCATGTCTTTTCTGTTA TTTTATTCCTGCTTG 100 226
   Spaf_1923 NONE
Spaf_igr1931 1960039 .. 1960054 +    -4  -3.68073   TAACCTTTCCCCATT              TAGTCT CATA AGACTG               TTATTAACTAGACTC  54 45
        gpsA NONE
        galU 2001786 .. 2001796 +  -2.4  -4.95155   ACTTCTGGTTTTGTT                 CCAG GAT CCGG                 TTTTTCTGGTGTCAC  68 503
   Spaf_1962 2009453 .. 2009474 + -13.7  -2.89565   TTGAACAAAGTGAAA           GCCAGCGTC TTTA GGCGCTGGC            TAGTTATCTGGGCTT 100 89
   Spaf_1968 2015085 .. 2015098 +  -6.7  -3.40622   ATGGTAGAAAAAGAG               GCTTC TTCC GAAGC                TCTATTTTCACGCTA  62 209
        hslO NONE
   Spaf_1976 2023804 .. 2023829 + -13.3  -4.93318   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTATAGATTATC 100 188
   Spaf_1982 2028376 .. 2028390 +  -8.6  -4.08945   AGTGGGCTCTACTAC               GCTGAT TTC ATCAGC               TTTTACAGCCCTACT  81 40
   Spaf_1990 2045072 .. 2045099 + -12.9  -4.36914   TCTCAAAACTCCCGA        GTGCTTGAAAC TTCATT GTTTCAAGCAC         TTTTCTCACGGCGGA 100 322
   Spaf_1991 NONE
   Spaf_1992 2046745 .. 2046764 +  -9.4  -4.68424   GTAGCTGCAACTTCT            GCTTCAAA GTCA TTTGAAGC             TTTTTCAATACCTTC 100 123
   Spaf_1996 2051717 .. 2051739 +  -9.8  -3.24545   CTATCAAAAATCAAA           GGCTGGACAG TTG TTGCCCAGCC           TCTTGGCTTCTTTTC  77 137
   Spaf_1998 2053157 .. 2053182 + -15.5  -2.79912   AACTTTAAACAAATA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 33
       rluD3 2056557 .. 2056587 + -12.7  -3.94846   AAAAAAAAAGCAAAA       GAACATAGCCCTG TCAAT CAAGGCTATGTTC       TTTCAATTTTCGTAG  95 42
   Spaf_2037 NONE
   Spaf_2038 2097341 .. 2097369 +  -8.3  -5.80817   TGCGGGGGTGGGAAG        ATTGAAAAGGTTT GGG GAACCTTTTCAAC        TTTTTTTATATTGAA 100 219
        argS 2102322 .. 2102332 +  -5.4  -3.03124   AAAATGACACAAGTA                 GTTG GAA CAAC                 TATTCCCAAATAGAA  53 39
   Spaf_2042 2102889 .. 2102911 + -10.7   -2.5409   TTCTCCAATCAAGAA           GCTCTCTTA TCCTC TAAGAGAGC           TCCATTCAAACTTAT  75 496
   Spaf_2050 2112290 .. 2112321 + -15.4  -3.25113   GTTTTTAGGTTTCAG      TAAGAGGTTGGCGAC AAG GTC-CCAACCTCTTA      TGTTCAATTTTCAAG 100 45
        malF NONE
   Spaf_2053 NONE
        malG 2114579 .. 2114606 +  -9.2  -3.34895   TTATTTTTAAGTTAA        GGGTAGTATGGT GGAT ACTTTACTACCC         TTCGTTAAGAATAAA  76 66
   Spaf_2055 2115488 .. 2115498 +  -2.4  -4.48072   TGATCCAGACTATCA                 CCGC TAG GAGG                 TTTTCTCATGCGTGT  58 19
   Spaf_2056 NONE
        pulA 2118567 .. 2118606 +  -8.6  -4.78149   CGAAACTGAATCAAC  AAAATAAGAGGCTGGGAC AAAA GTCCTAGCCTCTCAATTA   TTTTTGGATTGTCGA 100 19
   Spaf_2070 2131002 .. 2131021 +  -4.3  -5.80364   ATAATAACAAATAAA            GG-CAGGA TTTCT TCCTGACC            TTTTTTTGTTACCCT  91 37
   Spaf_2072 2131898 .. 2131923 + -13.3   -3.9392   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTGTTTCACATGAAA 100 178
   Spaf_2074 2135448 .. 2135471 +   -14   -5.7946   CTACGGTAACAGTCC          CTCCTGATCT ATCT AGATCAGGAG           TTTTTTTATTAGCAG 100 32
       sdaAB NONE
       sdaAA NONE
   Spaf_2090 2150284 .. 2150309 + -15.5  -2.79912   AGGAATTAAAAAAAT         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 24
   Spaf_2099 NONE
        recF 2158848 .. 2158883 + -13.5  -5.27938   AAGCCGGTCATATCA    AAACAGCATCTTGAC AATACC GTCAAGATGCTGTTA     TTTTTGTTTACAAAT 100 12
   Spaf_2103 2163398 .. 2163424 +  -6.7  -3.65529   AATAATAAAAATAAA        GAGCCCTGGAAT AATG ATTTCAGG-CTC         TTTCAGTAGAAATAT  66 36
   Spaf_2104 2166041 .. 2166063 + -11.4  -4.59773   ACTTATAAATAAAAG           GCTAGGATAG CAA TTATCCTAGC           TTTTTCAAAATAAAA  95 59
        degP 2170760 .. 2170787 + -13.6  -3.98627   TGACATACTTGTAAA        CACACCTTTACG AATT TGTAAAGGTGTG         TTATTCTATTCATAA 100 53
        parB 2171549 .. 2171572 +  -5.3  -5.71295   ATACCAACGAATTAT          CAACAGCCT AAAATA AGGCTGTTA           TTTTTGTTTTTGTAT   0 162
       spoU2 2168726 .. 2168741 -  -5.4  -6.79027   TGTAAAAAAAAAAAA              CGTAGT ACAA ACCACG               TTTTTTATTTGATCC 100 151
       agrC2 NONE
   Spaf_2105 2166082 .. 2166095 -  -8.1  -6.09196   TTCAAAATAAAAAAA               CACCC AAAT GGGTG                CTATACTAGCTCCGC 100 239
   Spaf_2102 2160449 .. 2160459 -  -5.4  -2.91728   ATTGTTAATATCATA                 CCAT TCT ATGG                 CAATTTGTCAATCAT  52 97
        guaB 2158851 .. 2158880 - -15.9  -4.34402   CCGGTCATATCAAAA       CAGCATCTTGACA ATAC CGTCAAGATGCTG        TTATTTTTGTTTACA 100 52
   Spaf_2098 NONE
   Spaf_2097 NONE
   Spaf_2096 NONE
       pgsA2 NONE
       cbiO4 NONE
       cbiO3 NONE
       cbiQ2 2151223 .. 2151238 -  -6.8  -4.75776   AATTTAATGTAAAAA              GCGCCA TATA TAGCGC               TTTTTCTTTATTTTT  80 59
        isaA 2150283 .. 2150310 -  -9.8  -5.65513   GAGGAATTAAAAAAA        TGAGGCTGGGAC AAAA GTCCTAGCCTCT         CAATTATTTTTGGAT 100 179
   Spaf_2087 2147290 .. 2147324 -  -6.7  -3.58533   TTACAAGTCTGTAAA     TTTAAAAAGAATCCT ATTAA AGAACTCTTTTCAAA     CGAATTTAATACCAG  64 31
        trmU 2145995 .. 2146020 -  -4.1  -4.51799   AGCAAATTGAGAAAA         TTTGTCAATTT AAAT ATACTGACAAA          CTTTTCCATCCCGAT  63 9
   Spaf_2085 NONE
        gidA 2143458 .. 2143484 - -10.2  -3.27808   TTCAATCCATAAAAT         TGAGGCTGAAAC ATC ATCTCAGCCCCA         TTTTATTAGTGGTTT  77 31
   Spaf_2083 NONE
        rplI NONE
       dnaB2 NONE
   Spaf_2080 2139026 .. 2139045 -  -7.1  -5.72622   CTCACAAATAAAAAA            CGCCTCC AAAATA GGAGACG             GATTGCACAAGGTCA 100 188
   Spaf_2079 NONE
   Spaf_2078 NONE
   Spaf_2077 NONE
   Spaf_2076 2136414 .. 2136436 -    -5  -3.86897   GTCATTTCGCACAAA           TTCTATTC TATCACG GAATAGAA           ACTTTGTAAAGTCCT  61 52
        rpsD 2135515 .. 2135535 -  -5.5  -6.17033   AAAAAAAACAAAAAA            CTGTCTCAT GTA ATAAAACAG            CTTTAGAGAATTTGT 100 136
   Spaf_2073 2131946 .. 2131968 - -12.1  -5.69793   ACATGAAACAAAAAA           CTCCCAACA CATTC TGTTGGGAG           TTCCTGAAGATTAGT 100 36
   Spaf_2069 2128774 .. 2128786 -  -5.5  -3.05385   AATAGATTAGACATA                GGCAG CAC CTACC                GTTTCTTGAACTGGT  53 4
   Spaf_2068 2128067 .. 2128085 - -10.4  -5.15117   TAAAACCCTAAAAAA             CTATCCTA AAG TAGGATAG             CCGTTATAGATTCTT 100 29
   Spaf_2067 NONE
   Spaf_2066 NONE
       dltC2 NONE
        dltB NONE
        dltC 2123363 .. 2123380 -  -4.1  -2.97012   AAATCAGCCACAAAC             GCTTAAG CATT CTGAAGC              TCCGTTACACCTTCT  47 10
        dltD 2122063 .. 2122096 -  -9.7  -3.86015   CATTTTCCTCACAAA     TCAA-GGAGCCAGGAT TCG ATCCTGCCCCCTTTGA     TCAAGCATTATTTAA  85 33
   Spaf_2061 NONE
        aspS NONE
   Spaf_2059 2118707 .. 2118736 -  -2.4  -2.57931   CGGAGGTGGGACAAC      GAAATCG--AATTC TAAC GAATTACCGATTTC       TGTCCCACTCTCTTA  40 44
   Spaf_2058 2118509 .. 2118521 -  -6.3  -2.74144   CCCCTATTCCTAAAG                GAAAG GAA CTTTC                TATTCCTGCCCATAG  55 25
        malQ NONE
        glgP 2106693 .. 2106717 - -10.8  -5.33866   CAAAGCTACAAAAAA          GACCAAGATC TGAAG GACCTTGGTC          TAACAACTAGTGATT 100 39
        gbpC 2103498 .. 2103530 - -10.6  -4.19483   CGATACAGATAGAAA      GGCAAGCGCCTCAA AACCG TGGAAGCACTTGCC      TGATCACTGATACGT  90 367
   Spaf_2044 2102886 .. 2102914 - -12.6  -3.33696   TTTTTCTCCAATCAA        GAAGCTCTCTTA TCCTC TAAGAGAGCTCC        ATTCAAACTTATCTA  93 41
        nrdI 2102386 .. 2102415 - -13.1  -3.51232   TTTTCTTTAAATGAA       CAAAAAACGCTGA TTTC TCAGCGTTTTTTA        TAAATGATACAAATC 100 23
       argR2 2100013 .. 2100039 -  -4.5  -3.79993   CCATAGATGAAAACA        GGA-GTAGATAG CTCA CTATCTTCCTCC         TTTTGACATCTCTCT  57 61
       mutS3 2097157 .. 2097179 -  -8.4  -5.49569   CACTAAGAGAAAAAA           GACTGGGCAA AAA CTGTCCAGTC           TTCGATGTTTAATAG 100 251
        mutL NONE
        ruvA NONE
   Spaf_2033 2092861 .. 2092875 -   -10  -5.13521   AAATTATTTAAAAAA               GTCGCA ACC TGCGAC               TTTTTATTGTTCCTA 100 38
        cinA NONE
        recA 2090194 .. 2090209 -  -4.8  -2.62184   CCTTTCGCTACACGA              TAATAC TATC GTATTA               AATTATAACACAAAA  49 73
   Spaf_2030 2089739 .. 2089759 -  -9.1  -5.64873   TTGAACAAGAAAAAA            TCAGAAACA AAC CGTTTCTGA            TTTCAATCGCTTTAA 100 37
   Spaf_2029 NONE
   Spaf_2028 NONE
        ruvX NONE
   Spaf_2026 2087887 .. 2087899 -  -9.1  -4.57073   GAGCTGGGCTAAAAA                CGTCC CCC GGACG                TTTTTACTCCTCCAT  90 29
   Spaf_2025 NONE
   Spaf_2024 2085928 .. 2085953 - -11.3  -5.42975   TTAGATAAACAAAAA         GAGATTGAAGA TACG TCTTCAACCTC          TACAGGGTCTTTACT 100 48
   Spaf_2022 2084258 .. 2084283 - -10.5  -4.71061   AGTCATATGTAAAAA         GAGTCAGGCAT CTCG ATTCCTGACTC          TGATTTTCGTTTTTA  95 46
   Spaf_2021 2082243 .. 2082295 -  -2.4  -5.61881   CTCCAAAAATAAAAA TCAATATCTTGTG--GTGAAAATTCT AAA AAACTTTCCAAAACACAAGATATTGA TTTCATTAAGACCGT  80 31
        nrdD NONE
   Spaf_2019 2079802 .. 2079819 -  -7.7  -4.50976   CCCCATACGAGAAAA             GCGAGAG CGAA CTCTCAC              TTTTTCTTATTTTTA  82 22
   Spaf_2018 NONE
        nrdG 2078615 .. 2078646 - -13.2  -4.05181   ACTAGAAATACGAAA      GCAGAACGATTTTT AAAT AAAATTCGTTCTGC       CCTACTTCTTTACAA 100 46
        cpsA NONE
        cpsB NONE
        cpsC NONE
       cpsFD NONE
       cpsFE NONE
       cpsFF NONE
       cpsFG NONE
   Spaf_2009 NONE
   Spaf_2008 NONE
       cpsFI NONE
       cpsFH NONE
       cpsFK NONE
   Spaf_2004 NONE
       cpsFJ 2062889 .. 2062912 -  -6.1  -5.28778   ATTAGTGATAAAAAA          TGGAGATAGC ACTGG GCT-TCTCCA          TTTTCAAATATACAT  89 55
   Spaf_2002 2058514 .. 2058526 -  -4.1  -2.96982   GCAATTAAAAAAATT                TCCCT TTT AGAGA                CTGGCTACAATACAA  47 180
   Spaf_2001 2056551 .. 2056593 - -11.5  -6.60575   ACTGAAAAAAAAAAA GCAAAAGAACATAGCCCTG TCAAT CAAGGCTATGTTCTTTCAA TTTTCGTAGTTGAAA 100 43
   Spaf_1999 2053157 .. 2053182 - -13.3   -3.8323   AACTTTAAACAAATA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 182
        secE 2051572 .. 2051596 - -15.1  -4.87626   TTTGAACATCAAAAA          GGAGAGAACCA AGT TGGTCCTCTCC          AGGTTATAACTTTTC 100 184
        nusG 2049347 .. 2049372 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          ATTTCGTTTCTTACA 100 36
        rpsB 2047774 .. 2047804 -   -14  -4.63932   TATTTTTTAATAAAA       TAAGAGGGTCGGGC TGA GCCCTGCCCTCTTA       GGTTCGTTACTTATT 100 49
   Spaf_1993 2046606 .. 2046638 -   -10  -4.76874   AAGACAAAACTAAAA      GGACTTAGTCCCGT GCAGT ACAGAACTAAATCC      TTTACTTAAATTAAT 100 92
   Spaf_1989 2043426 .. 2043451 -    -9  -5.15969   CCGTAACCCAAAAAA         GAGGCTGGGA GAAAAG TCCTAGCCTC          TCAATTATTTTTGGA 100 189
   Spaf_1988 2036368 .. 2036392 - -10.7  -3.68529   ATGTCATCAGGTAAA          GAGGGTGGAGA CTT TCCCCATCCTC          TTTCTGTTACCTGTG  86 78
   Spaf_1987 2032438 .. 2032463 -  -3.9   -5.3658   AGGAGAAAAATAAAA         GAGAGTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA  78 191
        ctsR NONE
        clpC NONE
   Spaf_1984 NONE
   Spaf_1983 2028296 .. 2028321 - -13.3  -4.67011   AACTTTAGCCAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 181
   Spaf_1981 2027404 .. 2027435 -  -9.6  -5.87996   GAACCAACAAAAAAA      GATCTGAAAAGAGA AGCT TATCCTTTCAGATC       TTTCGAATTTTATTC 100 35
        nadR NONE
        pnuC 2025434 .. 2025447 -  -3.8  -2.54896   TTTCCATCTAAGCCA               CCTC CTTCTT GAGG                GCTTTGGTCCATTGG  45 4
   Spaf_1978 2024596 .. 2024625 - -10.1   -5.1286   GAAAAATCAGAAAAA       GCCCTTCCGTTACT AAA AGTAAGGGA-GGGC       TGGTAGAATGAACCC 100 49
   Spaf_1977 2023804 .. 2023829 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTATAGATTATC 100 29
   Spaf_1974 2021505 .. 2021522 -  -7.1  -2.69151   CTTTTTCATATACCA             TAGATAG GATG CTATCTA              TGCCTTTCTTCAAAC  60 121
        purA 2020004 .. 2020029 - -13.3  -4.56597   TTCTGCTTTCAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTCTTTGGA 100 189
   Spaf_1972 2019298 .. 2019312 -  -3.6  -2.82987   GCAATATTCAGCAGA               TTAGAA AAG TTCCAA               CTTTTAATATTTTGG  46 47
   Spaf_1971 2017817 .. 2017838 -  -4.5  -4.21275   CTAATTTATTTAAAA           TCGTGATTA TTTA CAATCACAA            TTATAGTTAAATACT  63 107
   Spaf_1970 2015945 .. 2015961 -  -7.2  -5.64274   CGACTCACAAAAAAA              GCCGCC GATTG GGCGAC              TCTTATGGGAGATTA 100 245
   Spaf_1969 2015082 .. 2015100 -  -3.9  -4.89393   CAAATGGTAGAAAAA            GAGGCTTC TTCC GAAGC-TC             TATTTTCACGCTATT  72 294
   Spaf_1967 2011901 .. 2011918 -  -7.7  -5.68023   TTACAAGTAAAAAAA             CGACCTC TGGC GAGATCG              TTTTGTCTATTGATT 100 39
   Spaf_1966 2010712 .. 2010731 -  -5.7   -5.1675   TGATGGACTAAAAAA            GATCGGA GAGATA TCCGACC             TTTTAGATGCTTATC  81 41
   Spaf_1963 2009506 .. 2009524 - -14.6  -3.86015   TAGCCCTGGTACAAA             CCACCCGT TTG ACGGGTGG             TCATGATTCATTGAT 100 41
   Spaf_1961 NONE
   Spaf_1960 2007074 .. 2007090 -  -2.3  -3.91911   TTCATTTCAATTAAA              GGTAT TCATATT ATACC              ACAAACCCAAAGAGA  51 202
        dapD 2006318 .. 2006337 - -12.2  -3.40403   TTCTTTCTATTAGAA            TAGAGGCC TTGC GGCCTCTA             CCATTCCTATCTTAC  89 37
   Spaf_1958 2005126 .. 2005159 -  -9.7  -4.77173   TTTTTATAAAACAAA     GAAAAATCCAACTCC AGAC GGAGTTGAATCATTC      ATTTATTGGTTAGCC 100 28
   Spaf_1957 NONE
   Spaf_1956 2003676 .. 2003703 -  -9.8  -5.93809   TTTTTAGAAAAAAAA        GGAGGCTGGGAC AAAA GTCCTAGCCTCT         CAATTATTTTTGGAT 100 176
   Spaf_1955 2001405 .. 2001429 -  -7.8  -5.24129   TTTTGTTATAAAAAA          GAAGCCGGAC TTTTC GCCCAGCCTC          TTCCATTAATAGGAC  93 72
   Spaf_1951 1998261 .. 1998310 - -14.5  -4.78149   TTGATAACCTAAAAA TGCAACAACGGCCTTGCCCCTCTT AAA ACGAGGAACAAGACCGTTGCT-CA ATCTTTTATACATTC 100 90
   Spaf_1950 1993851 .. 1993891 -  -9.2  -2.64155   CTTTTTTCAAATTGA GTATTGGCTGTGCTAGCTT TTTA AAACT-GCACAACCAATCC  TCCTTGATGTTTCCT  72 39
   Spaf_1949 1987143 .. 1987172 - -16.5  -4.65895   CTTGTTATTTAAAAA       GAGAGGCTGGGAC AAAA GTCCTAGCCTCTC        AATTATTTTTGGATT 100 224
   Spaf_1947 NONE
   Spaf_1946 NONE
        radA 1984498 .. 1984509 -    -3  -4.07568   TTCCTTTCTGGAAAA                CAAA GTAT TTTG                 ATTTCCAAATTATTT  55 92
         cah 1983832 .. 1983842 -    -4  -4.24294   ACTAATGATCCAAAA                 GATT CCA AATC                 CTTCGCCTTTTGCAC  61 162
   Spaf_1943 NONE
   Spaf_1942 1973072 .. 1973099 -  -6.3   -3.8917   TCTCAACGACAATAA        GGGTGTGAAGT TCTACC ACTCCAAACCC         TACTGTATTCCAATT  65 122
   Spaf_1941 NONE
   Spaf_1940 1970668 .. 1970693 -  -7.5  -5.42605   TTAAGAAAAAGAAAA         GAGGATGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA  95 482
   Spaf_1939 1969524 .. 1969552 - -13.3   -5.1287   TCCACAGCCAAAAAA        GCCTTCCCATCTA AAT TAGATGAGAAAGC        TTCTAGGCGCCTACT 100 58
   Spaf_1938 1967676 .. 1967703 -  -4.8  -4.59773   TTCTACTGTTAAAAA        CACTCGGCAAGCC TTC GGC-CACCAAGCG        TTTCGTTTTCTACTA  71 41
        estA 1966824 .. 1966843 -  -8.6   -5.4833   TTATGCAAGAAAAAA            GTCAGAAC AAAT GCTCTGAC             TGATATCCAATCTAT 100 48
       gltX1 1965206 .. 1965222 -  -2.9  -5.54338   TAAGTAAAACAAAAA              GCCCCAT TTA ATAGGGA              CTTTTCTGATAATTA  77 38
         gly NONE
         nss NONE
       galT1 NONE
       galT2 1960100 .. 1960126 -  -2.5  -3.97681   ATGAAGTAAAAAAAG        GAAACAGTCATT TATA AATAA-TGTTTC         TGCTTCCCTCTCTTT  52 163
        fap1 1951740 .. 1951795 - -15.3  -2.93549   TATTCTGAATAATTA TAACATAAAAACAAG-GTTGA-GGTGT GTAA ACACCACCAACCCTTGCTTTTATGTTA ATTAAAGATAGTCCT 100 47
       secY2 NONE
        gap1 NONE
        gap2 NONE
        gap3 NONE
       secA2 NONE
        gtf1 NONE
        gtf2 1941138 .. 1941162 - -11.5  -4.87626   TTTGAACATCAAAAA          GGAAAGGAGCA AGT TGGTCCTTTCC          AGGTTATAACTTTTC 100 339
   Spaf_1922 NONE
   Spaf_1921 1938898 .. 1938919 -    -3  -5.76949   TATTTTCAAAAAAAA           CCAATCTC ACTCAG GAAATCGG            TTGTTACTTGAATAC  81 29
        rnpA NONE
   Spaf_1919 1937664 .. 1937676 -  -4.8  -2.94099   TTGCTCCAGTATATA                GGAC CATAT GTCC                ACCTCTTTCTTATTT  52 35
   Spaf_1918 1936671 .. 1936701 -  -4.1  -5.10208   TAAGCCTAACAAAAA      GGGAGAAGATCGG CTCAATC CCG-TC-TCTCCC      TCATGGGAAATAATA  74 47
   Spaf_1917 1935995 .. 1936022 -  -6.4   -3.3579   AAATTGTTGCAAATA        CAGGTCGGAGAAA ACC TTTCTAC-ACCTG        ACGGGTTGCCAAGTA  62 17
   Spaf_1916 1935688 .. 1935711 -  -3.9  -5.58522   CAGACAAAACAAAAA          CCAGTAG TCTCGAGTTT CTACTGG           TTTTTAGGTTTTTAT  81 46
        tatD NONE
        rnmV 1934255 .. 1934272 -  -6.3  -3.08015   GTAATCAGTCTAAGA             GTAAAGG ATCC CCTCTAC              TTACGTCCTAATAAC  56 138
        ksgA 1933308 .. 1933345 - -17.3  -3.28712   CCTTTCCTTCTATAA   CAGAAAAGACATGAGTT ATGA AGCTCATGTCTTTTCTG    TTATTTTATTCCTGC 100 26
   Spaf_1910 NONE
        rsgA NONE
   Spaf_1908 NONE
   Spaf_1907 NONE
        rmuC NONE
   Spaf_1904 1927371 .. 1927389 -  -3.1  -4.04789   AGCGAAAAAAACGAA             CATTCTG ATTTA CAGAAGG             CCGTTTTTCCCTAAT  57 84
        purR NONE
   Spaf_1902 1925860 .. 1925889 -  -7.3   -5.1166   GACCAAAAGTAAAAA       GTACCGTC-TATTA TTA TAACATGACGGCAC       TTTGTTTGCAAGATC  90 76
        rpsL NONE
        rpsG 1924619 .. 1924639 -  -9.7  -5.11063   ATGATTTAATAAAAA            CGGATAGGC AGG ACCTACCCG            TTCTCAGTGTTTTCA 100 216
        fusA 1922438 .. 1922458 -    -9  -5.42975   CCAGACAAACAAAAA            CCCTTCCC TAAAC GGGAAGAG            TTCTCAGATTTGGTA 100 43
        gapA 1921143 .. 1921160 - -11.3  -5.77632   AAAAGTACAAAAAAA             GAGGAGG TTTC CCTCCTC              TCATCATACGCATGA 100 42
   Spaf_1897 1916107 .. 1916130 - -15.4  -4.06825   CAAAATAAGATCAAA          CCTCTCTGGT TTTC ACCAGAGAGG           TTTTTTTGAGAGTGA 100 75
   Spaf_1894 1913996 .. 1914021 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTCATTCTATTTAG 100 42
   Spaf_1893 1913206 .. 1913243 -  -8.1     -6.13   ATATCGAAAAAAAAA   TCTATGTCAAGATTAAAT GTT ATATAATCTT-ACATAGA   TTTTTTGTGCTTCTT 100 17
        glnR 1912805 .. 1912823 -  -4.6  -3.77206   TACAAGCTTATGAAA             TGATCAAC GAA ATTGACCA             TATGGCGATGGGGAA  57 10
        glnA 1911233 .. 1911258 - -13.3  -4.77036   TTTGAGGATCAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 189
   Spaf_1888 NONE
        rimI NONE
   Spaf_1886 1906808 .. 1906834 -  -3.1  -5.15634   GATCCCAGCAAAAAA        GCCA-TTGGA ATCGCACA TCCAATTGGC         TCCTTTTTCTTATTC  73 35
   Spaf_1885 NONE
   Spaf_1884 NONE
   Spaf_1882 NONE
   Spaf_1881 NONE
   Spaf_1880 1903240 .. 1903282 -  -8.8  -2.79183   CTGACTCCCATTATA CTCCAATTGTTACAAAAA TCAAGTT TTTTTGTAACAATTGTAA TTTTTTTGTAACATA  69 50
   Spaf_1879 1902512 .. 1902536 -   -13  -5.47821   ATCTATCTAAAAAAA          CGAACTCGAT TTTCC ATCGAGTTCG          TCTTTTTATTGTTCT 100 31
        cidA NONE
   Spaf_1875 1898537 .. 1898567 - -11.4  -3.62224   AGATTTTTTCAATAA       CTTTCCGAAAAA TATCTGT TTTTTCGGAAAG       ATGGCTAATAATCTT  87 484
   Spaf_1874 1896995 .. 1897020 -    -7  -4.53034   TTGAGATAATGAAAA         TCCTATGAAA TCAAAG TCTCATAGGA          TTTTTTGTTTTGTTT  79 498
       mutR2 1895544 .. 1895554 -  -2.6  -3.48276   TTCCCTTTTACACAA                 TTTA TTC TAAA                 TCGTTCAACACTTGT  48 16
   Spaf_1872 1895323 .. 1895352 - -12.9  -4.45544   CCTCATTAATGAAAA       CAGAGATGGGGAA ATTT TTCCCCACCTCGG        AAGAAACTATCGACC 100 32
   Spaf_1871 NONE
   Spaf_1870 1892311 .. 1892325 -  -2.8  -5.93252   GGCAAAAAGAAAAAA               CGCT TGAAATC AGCG               TTTTTCTTCTGTATT  85 268
   Spaf_1869 NONE
   Spaf_1868 1891196 .. 1891221 -  -9.1  -5.85244   AATTAAAAGAAAAAA         GCCTTTGAAAT GCTG ATTTCATAGGC          TTTTAATATATCTAA 100 75
   Spaf_1865 1887986 .. 1887997 -    -3   -3.1314   GAAATTCTAACAAAT                TACA CCCT TGTA                 CATTAGAATCACTTC  45 108
   Spaf_1864 1885969 .. 1886011 - -14.4  -3.66742   TCTATACAAATAATA GAAAAGGACTCAGTCCTGTA CAA TACAGAACTAAATCCTTTGC TTAAATTAATTGTCT 100 96
   Spaf_1852 1875374 .. 1875396 -  -6.3  -5.46706   ACTGTAAAATAAAAA           GAGTTAAGC TAGTT GCTTTACTC           TTGAGTAATAGTGGG  91 6
   Spaf_1851 NONE
   Spaf_1850 NONE
   Spaf_1849 1872729 .. 1872751 -  -2.6   -4.5115   CATAAAAATTGAAAA           CCCAACTCCC ATA AGGAATGAGG           AGGGGTGGACTTGGC  60 135
   Spaf_1848 NONE
   Spaf_1847 NONE
   Spaf_1846 NONE
   Spaf_1845 NONE
   Spaf_1844 NONE
   Spaf_1843 NONE
   Spaf_1842 NONE
   Spaf_1841 NONE
   Spaf_1840 NONE
   Spaf_1839 NONE
   Spaf_1838 NONE
        xerC 1861729 .. 1861740 -  -5.8  -3.14132   TTCCTTTCGTATCAA                GGGT TTAG ACCC                 TATTGCTTATTTTTC  58 64
   Spaf_1836 1861349 .. 1861374 - -13.3  -3.74868   TCCAAAAACAATTAA         GAGGCTCGGAC TTTT GTCCCAGCCTC          TTTTGAGTTGATGAA 100 52
   Spaf_1832 1856241 .. 1856269 -    -4  -4.63218   TTTTGCGCAAGAAAA       GACAGATTTCTCA AAAT TTAG-AATCTGTC        TTTCTTTTCTTAATA  66 35
   Spaf_1831 NONE
   Spaf_1829 1854421 .. 1854443 -  -9.9  -4.41353   TGACAGATAGCAAAA           GGCCAGGAT CCATC ATCCTAGCC           TTCCATTTCTATTTT  91 34
       mvaK2 NONE
        mvaD NONE
       mvaK1 NONE
   Spaf_1825 1850340 .. 1850367 - -14.3  -4.36914   TCCGCTGTGAGAAAA        GTGCCTGAAAC GTTTTT GTTTCAGGCAC         TCGGGAGTTTTGAAA 100 153
   Spaf_1824 NONE
   Spaf_1823 1847530 .. 1847553 - -12.6  -4.16943   GTTTACATTCTAAAA          GAACTAAGAC GCAC GTCTTAGTTC           TTTTTTGTTTGAAAA  95 52
        dinB 1838797 .. 1838824 - -12.9  -4.36914   TCCGCCGTGAGAAAA        GTGCTAGAAAC ACTATG GTTTCTAGCAC         TCGGGAGTTTTGAAA 100 156
   Spaf_1812 NONE
   Spaf_1811 NONE
       mutS2 1831095 .. 1831122 - -17.2  -4.36914   TCCGCCGTGAGAAAA        GTGCCTGAAACA TAAT TGTTTCAGGCAC         TCGGGAGTTTTGAAA 100 168
        pepD 1829130 .. 1829152 - -13.6  -5.00267   AATGAGAAAAAGAAA           GAGTACATGT CAA ACATGTACTC           TGGTCCTGCTTAAAA 100 280
   Spaf_1808 1827717 .. 1827752 - -16.4  -3.26031   CCTATCTCAAATAGA    CAAGAAAACCCAGACC TCGC GATCTGGGTTTTCTTA     TTTTTTAAAGTAGCG 100 23
   Spaf_1806 1825467 .. 1825488 - -11.7  -3.77806   TTCTACACCAAAATA           GCTCAGAAA AATA TTTCTGAGC            TTTTTTACATGATTC  91 30
   Spaf_1805 NONE
   Spaf_1804 1823510 .. 1823529 - -10.8  -5.28755   AAATAGACCAAAAAA            GCTCAGAA AGGT TTCTGAGC             TTTTTTGTGTTAAAA 100 64
   Spaf_1802 1822865 .. 1822880 -  -3.2  -4.07568   CGCTGCCTTTGAAAA              CGTAGC AAAT GCTATG               ATTGCACAAGGTCTT  57 47
       pyrD3 1820280 .. 1820305 - -10.5    -5.252   CACTCTCATAAAAAA         CTCCCCCAAGT TTCC ACTTGAGGAAG          TTTTTTTCGAAAGAT 100 40
   Spaf_1799 1819515 .. 1819539 -  -9.4   -4.7254   ATTCTGCATCAAAAA          TCCCTTCTAC TATAT GTAAAAGGGA          TTCAATCCTTCTTAT 100 172
        msrB 1818345 .. 1818372 - -17.2  -5.00616   TCCGCTGTGAAAAAA        GTGCCTGAAACA TAAT TGTTTCAGGCAC         ACGGGAGTTTTGAAA 100 130
        pgsA NONE
        mutS NONE
   Spaf_1795 1814329 .. 1814352 -  -3.9  -5.09225   AGGGCAGTCAAAAAA          GCTAACC TATCTTTGCC GGTTAGC           TTCTATTTTTTTATC  74 36
   Spaf_1794 1813548 .. 1813567 -  -4.2  -4.21275   TCAAGCCAGTCAAAA            CTACCCGT GAGA ACAGGTGG             CTTATGAAGGTTGCT  63 59
   Spaf_1793 NONE
   Spaf_1792 1811939 .. 1811960 -    -6   -5.4477   AAAGTTTTAAAAAAA           CAAATCTT ACTTTG AAGATTTG            TCTAGTTGGGCTTGT  91 55
   Spaf_1791 NONE
   Spaf_1790 1811075 .. 1811086 -  -4.4  -2.59564   CCTTTATTCCACAAT                CATG TGAC CATG                 CATCATGTTCATTCC  47 2
       copA2 1808622 .. 1808675 -   -23  -5.61913   AAGAAAGATAAAAAA GAGAGTGGGACAGAAATCGGTAATTC GTTA GAATT--CGATTTCTGTCCCACTCTC TTTTCTCACGGCGGA 100 180
        poxL 1806493 .. 1806510 -  -7.7  -4.83615   TATCCTCCACAAAAA             GACCGGA TAGC TCCGATC              TTTTTATTTTCCACG  88 48
   Spaf_1787 1806046 .. 1806063 -  -7.7   -5.4505   GTCTTTAATAAAAAA             GACCGGA TTGC TCCGATC              TTTTTAAGTTCCACT 100 88
   Spaf_1784 NONE
        rhaA NONE
        rhaD 1800366 .. 1800382 -  -9.4  -3.55219   AATTCCATGATAGAA              GGGAGG TCCTG CCTCCC              TTAGCTTCATCATCT  78 58
   Spaf_1781 1799072 .. 1799097 -  -9.9  -5.49234   ATATTTAATAAAAAA         CTAGGAGATTGA TCT TCA-TCTCCTAG         CATATATTCTAATCA 100 41
   Spaf_1776 NONE
   Spaf_1775 1789112 .. 1789139 -  -3.5  -4.19817   GGTAGCTATCGAAAA        CGACACATT GAAAAAAACA AATGTGCCG         TTATCACTTTATCAT  59 87
   Spaf_1774 NONE
   Spaf_1773 1785541 .. 1785564 -  -8.2  -5.44119   TTTACTCTAAAAAAA          GATCCCAAGC CCTT ACTTGAGATC           TAAAAATCCATCTTA 100 38
        bglA 1783945 .. 1783980 - -13.4  -4.97824   AAAATGCAAAGAAAA    CACTCGACCAAGTGAA GGAT TCCTCTTGATCGAGTG     CTCATTTAATTGACA 100 31
   Spaf_1771 NONE
   Spaf_1770 1782259 .. 1782279 - -15.5  -5.20333   GATTTATAACAAAAA            GGCTTGAGC ACT GCTCAAGCC            TTTTTTCTTAGTGTA 100 19
   Spaf_1764 1776532 .. 1776561 -  -2.9  -5.31456   CTAAGTCATAAAAAA       GACTTCACCTTATC CTA GATT-GGTGAAGTT       TTTTGATTTTTCTTC  74 10
   Spaf_1763 NONE
   Spaf_1761 NONE
   Spaf_1760 NONE
       cbiO2 1773196 .. 1773207 -  -4.4  -3.48193   TATTAAACACAAAAG                TCAC CCAT GTGA                 GTTCTTGCCAGAAGC  55 86
   Spaf_1753 1771514 .. 1771538 - -14.3  -4.95758   AGTATATCATAAAAA          GAGGTGGGGCA ATA TGCCCAACCTC          ATGTATTTTATTAAT 100 46
   Spaf_1752 1770442 .. 1770476 - -14.6  -3.29144   TTAGCCTTGTTATAA     GAAAAGCTCAAGTTTT AAA AAAACTTGAGCTTTTG     TATTTGCTATTTGTT 100 39
   Spaf_1749 1768456 .. 1768478 -  -8.5  -5.55664   TTAGTATCAAAAAAA           CTCCTAGAG ATAAA CTCTAAGAG           TGTAAATAACTATTC 100 41
        hemH NONE
   Spaf_1747 1766101 .. 1766137 -   -11  -5.02502   TACAGCATAGAAAAA    GGCTTGGGAATACAAC TTACT GTTGCATTTCCAAACC    TTTGATAGAACTAGA 100 47
   Spaf_1745 NONE
   Spaf_1743 1762813 .. 1762840 -  -4.2  -5.65513   TACTAACTAAAAAAA        TTCTAGTGGATT TGAG ATTCTACTAGAA         TTTTTCATTATCTGA  86 274
   Spaf_1740 NONE
   Spaf_1739 NONE
   Spaf_1737 NONE
   Spaf_1736 1759675 .. 1759689 -  -4.2   -3.4799   AGAAAAGACCTATAA               GTGATG AAC CATCTC               TAGGCACAATTCTAA  55 5
       trkH2 NONE
       trkA2 1757552 .. 1757565 -  -5.9  -5.69473   TAGAGGAGAAAAAAA               CGACC TTTC GGCCG                TCTCCATTACACAAT  91 40
   Spaf_1732 1756656 .. 1756678 -    -7  -5.48825   TAGCACTCAAAAAAA           GGCCTGTCAA CAC TTGACAGAAC           CTTTCCTAAAATTTT 100 47
   Spaf_1731 NONE
   Spaf_1730 1754312 .. 1754327 -  -2.6  -3.58731   AAAATAGGGGTGAAA              TTGCAA GAAT TTACAA               GTCTTCTCCCTCTTC  48 20
        dexB 1752572 .. 1752611 - -10.3  -4.59511   AACAGTCCCTAAAAA GTA-AAGCAGG-CCTTCTC TACT GAGAAAGACCTGCTTCTAC  GAGGAAGTAATTTCC  95 60
        metE 1750043 .. 1750064 -  -4.5  -4.15565   GGGATGAGTCGAAAA           CCCTCTA-CA CGA TGATAGAAGG           TCCTCGAAGCATTTC  61 41
        metF 1749039 .. 1749067 - -11.1  -5.30616   TTATCCAAATAAAAA        GAGACTGAGAACG ATT CTTTCTCAATCTC        TACACTTCCTACTAA 100 50
   Spaf_1724 1745903 .. 1745937 -    -8  -5.07275   CTACACACATAAAAA     GCATAGAAACACTC ATTGCTA GGGTATTTCTATGC     TTTTTCTTCGTTTTC  93 111
        hutI 1734230 .. 1734261 - -13.2  -5.20154   ATACAATTGAAAAAA      GACTTCGCTGATTT TTAC AAACCAGCAAAGTC       CCAAATGAAATGGAG 100 45
   Spaf_1713 1731426 .. 1731451 - -13.3  -4.46212   CTGTTCATCACAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 180
   Spaf_1712 1729073 .. 1729099 -  -6.7  -5.67529   AATTAAAAACAAAAA        GGAAGC--CCTCT TAG AGAGGATGCTTCC        TAGTTTTGATTAATT  93 35
   Spaf_1711 1724411 .. 1724439 - -12.6  -2.69151   CCTTTTTACACACTA        GGTTAAGGTAGC TTCAC ACTACCTTAACC        CTTATTTTATCCTTG  85 60
   Spaf_1710 1719825 .. 1719862 - -15.1  -3.46647   TCCAGCTATGAAATA   GAAAACGAGCAGTTCCA ACTA TAGAATTGCTCGTTTTC    CGACATGTCAACAAT 100 52
   Spaf_1709 1719684 .. 1719694 -  -5.4   -3.5772   ATCACAAAAATAAAC                 CGTT TTC AACG                 CACTGCTTATCCTTC  58 32
   Spaf_1708 1719118 .. 1719145 -   -15  -4.80396   TAAAATACTCAAAAA        CGAGCAGTTCTA TGTA TAGAACCGCTCG         TTTTTGAGTAACATT 100 64
        rpsF 1716046 .. 1716058 -  -4.1  -2.70476   ATTGTTAATCATAAG                TCACC TCT GATGA                TTTCTTACGCGTCAA  45 30
   Spaf_1703 1715539 .. 1715553 -  -8.6  -2.74322   TTTAATTCGTTAAAC               CCATTC TTA GAATGG               AAGATCGTCGTCTGA  68 17
        rpsR 1715243 .. 1715256 -  -8.1  -5.52986   AGCTCATGAAAAAAA               GACCC GTTA GGGTC                TTTTTTTTTAATCTT 100 33
   Spaf_1700 1714062 .. 1714073 -  -5.8   -3.2218   CTTAACACTCACGAA                GAGC TATG GCTC                 AACAATAATGTGGCA  55 364
   Spaf_1696 NONE
   Spaf_1695 1709306 .. 1709324 - -11.8  -4.87389   GACGTTAAAAAGAAA             CGGATGAA GTT TTCATCCG             TTTTTGTTTTACTGT 100 159
   Spaf_1691 NONE
        pepP 1703420 .. 1703438 -  -7.5  -3.45571   TTTCTCAAACAGCAA             TCTTCTC TTTTT GAGAAGA             AAGGATTGCTATGGA  67 224
   Spaf_1688 NONE
   Spaf_1687 NONE
        nusB 1701915 .. 1701928 -  -8.1  -5.52384   TTTTTACCAAAAAAA               GAGCC AGTA GGCTC                TTTTTACTTATTCTT 100 33
   Spaf_1683 1699121 .. 1699131 -  -6.8  -3.75153   TTTTTGTAATGTAAA                 CGGT TCA ACCG                 TCTCTACGTTTTCAA  66 141
        scrA 1697023 .. 1697057 -   -10  -4.99043   TTTTGAGAAATAAAA     TTCAAGGACTGGAGAG AAC CTGACCAGTCCTTGAG     AACTTATTGATATTA 100 41
        scrK 1695955 .. 1695974 - -12.2  -4.55209   GATAGACGAAAGAAA            CCGAGACA AATC TGTCTCGG             TATCGCTCTTGTTTC 100 65
   Spaf_1680 1695479 .. 1695497 -  -9.6  -5.14563   TTTCCTAGTAAAAAA             TGGAGCCA GAT TGACTCCA             TCCATCACTTCTATA 100 36
   Spaf_1679 NONE
   Spaf_1677 1694046 .. 1694067 -  -8.1  -5.68023   CTACAATGAAAAAAA           CACTAAGAT TGTA ACCTTAGTG            TTTTTTTAGTTCCTT 100 20
        manA 1691772 .. 1691785 -  -2.5   -3.1577   AGTCAAGACTTAACA               TAAAA ATAG TTTTA                TTTCAGAAAAAAGGC  45 80
        merR 1690789 .. 1690816 -  -9.8   -5.1675   TGATCCAGCAAAAAA        CGAGGCTGGGAC AAAA GTCCTAGCCTCT         CAATTATTTTTGGAT 100 180
   Spaf_1672 1688542 .. 1688559 -  -7.7  -5.11613   AGATCATTCAAAAAA             TGCCTGC CAAA GCAGACA              TCTTATAACATAGAA  93 218
        secA 1685898 .. 1685908 -  -3.2  -2.85176   AAAAATCAAAATTTA                 CGTC CGT GACA                 GTTTTTAAATTTCTT  44 5
        aroF 1684774 .. 1684801 -  -8.4  -4.03183   ACTGACAAAAGAGAA        GGGGCTAAAGAA TCAC TCCTTCCGCCCC         TGCCTTTTACTTATT  79 32
        acpS NONE
   Spaf_1666 NONE
        recG 1681130 .. 1681169 -  -9.4  -3.72485   AAATACAATCTTAAA  GGGAGTAGACTGGA-ATCC AAA GAATTTCCTCTCTACTCCC  TTTTTATATTTTAGT  81 36
   Spaf_1663 1678118 .. 1678170 - -11.6  -2.76242   ATCCAAGACACAGTA GCTGATT-GAATTCTT-CTCCCGCCT TTT AGCCCGGAGGAAGAATCCTAATCAGC CTTGTGGGGGCAGGA  82 411
   Spaf_1661 1675894 .. 1675917 -    -9  -5.66868   AATGAATCAAAAAAA          GATTGAAGAC CTTC ATCTTCAATC           CTTCATGATAATTAG 100 37
        codY NONE
   Spaf_1659 1674335 .. 1674378 -  -3.4   -5.4593   TTAAAATAAGAAAAA GAG-ATGAGACTAATTGAG AACTACA CTCAACTAATTTCATACTC TTTATTTATTTTCAC  79 27
       gatC2 NONE
       gatA2 NONE
       gatB2 1671009 .. 1671020 -  -2.2  -4.81551   TATGGATAGTAAAAA                CCAA CCTC TCGG                 CTGTTTTTTTTCTCT  64 42
   Spaf_1655 NONE
   Spaf_1654 1669299 .. 1669321 -  -9.9  -4.46926   TATTGTATCACAAAA           GGCCGAAAC TACAC GTTTCAGCC           TTGCTTTATTTTATA  91 54
   Spaf_1653 1668292 .. 1668313 -  -5.1  -5.01535   CGAGAATCACAAAAA           GGCCAAGAC TTTC GTCTCAACC            TTTTTACTGAAAAAC  76 55
   Spaf_1651 1667061 .. 1667087 -    -8  -5.06505   AACTATAGATAAAAA         CACTCCTAGATC TAT GTCCTAGAAGTG         CCAACTTCCGCATTA  89 38
   Spaf_1650 1665737 .. 1665757 -  -2.7  -3.09831   GCCATTTTAAAAGTA            TTTTTTTAT TTT ATCAAAAAA            GCATTTGCTTGCCTA  43 77
   Spaf_1649 NONE
        metQ 1663924 .. 1663949 - -12.7  -3.52475   CCTAATACACGATAA         GAGGTAGAGAA TCGC TTCTCCACCTC          CTTCATACACTTGAG  95 49
        dapE NONE
        metN NONE
        metI NONE
   Spaf_1644 NONE
   Spaf_1643 NONE
   Spaf_1642 1658575 .. 1658600 -    -9  -5.72622   TTGATAAACAAAAAA         GAGGCTGGGA AAAAAG TCCTAGCCTC          TCAATTGTCTTTGGA 100 190
   Spaf_1641 1658274 .. 1658291 -  -3.5  -2.75844   CTTTCTATGTTAAAG             CTGTTACT CCC AG-AACAG             TTGATCCAGCGTCTT  44 11
   Spaf_1640 NONE
   Spaf_1639 1657544 .. 1657556 -  -6.3  -3.13743   AAATCTCACACCCAA                TCGTT AAC AACGA                ACAGAATAATACAAT  58 16
   Spaf_1638 1657213 .. 1657238 - -11.3  -4.66609   TATTTGACTGAAAAA         TAAAAGCCTGG GATT CCAGACTTTTA          TACGACGAAACCAAA  95 52
   Spaf_1637 1656101 .. 1656120 -  -8.6   -4.9725   ATTTCCATATAAAAA            CAGCCTGA GCTT TCAGACTG             TTTGTTTCCATTATG 100 36
   Spaf_1636 1655060 .. 1655111 -  -3.8  -5.36965   GAAGAGTATAAAAAA GAACTG-CTCCCAGACGTTAGAT TTTTAGG ATCAAACGTCGAAGGGACAGTTC ACTGCGATATTTTTT  78 40
   Spaf_1635 NONE
        cbiO NONE
        cbiQ NONE
   Spaf_1632 1650898 .. 1650922 -  -7.2   -5.5762   AGGAAAGATAAAAAA         CAACCAACCCC TTGT GGAGT-GGTTG          CTTCTCATTTTAATC 100 35
   Spaf_1630 1649764 .. 1649795 - -13.8  -3.89215   GCGGATAAAGTCAAA      TAAGAGGCTGGGAC AAAA GTCCTAGCCTCTCA       ATTATTTTTGGATTG 100 176
       lemA2 1648379 .. 1648404 -  -3.3  -3.55622   TGCAATTTGGTCAAA         CAGCATATTAG TCTC CTAATCCGCTA          AAGTCCACCTTTGGT  50 7
        htpX 1647325 .. 1647351 - -16.8  -4.36914   TCCGCCGTGAGAAAA         GTGCTAGAAACA AGT TGTTTCTAGCAC         TCGGGAGTTTTGGAA 100 162
   Spaf_1620 1643749 .. 1643771 -  -9.2  -4.29905   AGTATATCAAAAGAA           GGCCTTTCCT CAA AGAAAAGACC           TGTATTTATGTCTAA  86 64
   Spaf_1619 1642165 .. 1642190 - -10.5  -5.27023   ATCTTAAAAACAAAA         GTGCCCGAGAA ACAG TTCTCAGACAC          TTCCTGATGAATGAC 100 42
   Spaf_1618 NONE
   Spaf_1617 1639876 .. 1639902 - -16.8  -5.37593   TTTGAAACTAAAAAA         CATTCGAATCCT TAA AGGATTCGAATG         TTTCATTCTAACTCA 100 28
        ptsG 1637423 .. 1637435 -  -6.2  -4.39696   TTCCAAATCAAGAAA                CGGC AAGAG GCCG                GGTGCACTGCCCCAA  73 65
   Spaf_1614 1636528 .. 1636564 -  -3.9  -5.42514   TTACAAATTAAAAAA    GTCCTAAAACAATTTAA AAC TAAAATCATTCTAGAAC    TCTCATTTGATTTTA  78 38
        nrdR NONE
        dnaB NONE
        dnaI NONE
   Spaf_1610 NONE
        engA 1631681 .. 1631698 -  -5.5  -5.52986   ATCTTATTAAAAAAA             GCAACGC TTAT GCGCTAC              TTTTAGTTGTTTTCA  88 111
   Spaf_1608 NONE
   Spaf_1607 NONE
        murC 1626022 .. 1626055 - -13.3  -4.13246   CAGTGGACAGATAAA     TTTGAGTCTGGAACC AATC GATTCCAGACTCAAT      CATCTCTTATTGTAC 100 32
   Spaf_1605 NONE
   Spaf_1604 1625005 .. 1625018 -  -3.1  -4.49781   AAAAGATTTAGAAAA               GCAAT ACAA ATCGC                CCTTCTTCTTCAAAA  62 52
   Spaf_1603 1623427 .. 1623446 -  -4.3  -4.87291   TATTTGAATGAAAAA            GC-TGTGG ACGCG CCACATGC            TTTTTCTAGTTTGAA  71 31
        greA 1622882 .. 1622902 -  -9.7  -4.89393   CAAATGGTAGAAAAA            CAAGCCCTC TTG GAGAGCCTG            CTTTTATAGTTACGC 100 35
        spoU NONE
   Spaf_1596 NONE
   Spaf_1595 1617711 .. 1617730 -  -9.2  -5.80817   CGGAAGACAAAAAAA            GCCGAGGC TATT GCCCCAGC             TCAATCTCTCTTTGA 100 41
        lysA NONE
   Spaf_1593 1616039 .. 1616060 -  -5.1  -4.07568   CTCTTCCTTCCAAAA           GGAGGGACT AAGA AATTCCTCC            AAGCCCCTCTCATTT  63 64
        murI NONE
   Spaf_1591 NONE
   Spaf_1590 NONE
   Spaf_1589 NONE
   Spaf_1588 NONE
        scpA NONE
        scpB NONE
        rluB NONE
   Spaf_1584 1610287 .. 1610315 - -14.1  -5.24129   CTCTTGTACAAAAAA        TACCCTTAGAAAC ATA ATTTCTAAGGGTA        TTTCTGTTTATTTGT 100 48
        cspR 1606525 .. 1606538 -  -6.7  -6.17268   TGATAACAAAAAAAA               CTTGC CTAG GCAAG                TTTTTGTAACGTCAT 100 75
   Spaf_1580 NONE
   Spaf_1579 1604819 .. 1604843 -  -7.2  -6.19443   TATAGCAAAAAAAAA          GTCGAACTCA AAACG CGAGTTCAAC          TCCTAGTTGTTAGTT 100 39
   Spaf_1578 NONE
   Spaf_1577 NONE
   Spaf_1576 NONE
   Spaf_1575 1600531 .. 1600541 -  -2.6  -4.34771   GAAAATTTATGAAAA                 TATT ACA AATA                 TCTACAATTGACAAA  57 473
   Spaf_1573 1595460 .. 1595484 - -15.1  -4.87626   TTTGAACATCAAAAA          GGAGAGAACCA AGT TGGTCCTCTCC          AGGTTATAACTTTTC 100 73
   Spaf_1570 1590977 .. 1591005 -  -3.2  -4.78839   AATCCTATAACAAAA        TAGTGCTAAG ACAAATGAG CTTAGCACTT        TTTAAATCTTTAAAT  67 35
   Spaf_1568 NONE
   Spaf_1567 1586951 .. 1586980 - -12.1  -4.36914   TCCGCCGTGAGAAAA       GTGAGGCTGGGAC AAAA GTCCTAGCCTCTC        AATTGTTTTTGGATT 100 387
   Spaf_1566 NONE
        tlyC 1585001 .. 1585026 -  -8.4  -5.88476   AAAATAAATAAAAAA         TCCGCTTAGA TCATTC TCTAAACGGA          TGCTTGAAATTCTCC 100 374
   Spaf_1564 NONE
   Spaf_1562 NONE
   Spaf_1561 1582091 .. 1582116 - -13.3  -3.67976   GTCATCAATCTGAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 182
        treB NONE
        treC 1577056 .. 1577081 - -10.5  -5.61881   TTTCAAAAAGAAAAA         CACTTCGACCC AAAA AGATCGAAGTG          TAAAATACTTAAACT 100 34
   Spaf_1557 1574606 .. 1574620 -  -7.8  -5.67063   TTTAGGAGAAAAAAA               GGAGCC AGC GACTCC               TTTTTTAGATCTTTC 100 53
       pflA2 1573610 .. 1573628 -  -8.9  -5.31275   TTTCACTAGAAAAAA             CAGTTGG GTTTG CCAACTG             TTTTTCTTCTTTATC 100 36
   Spaf_1554 1572538 .. 1572551 -  -6.7  -5.14563   CCTCCTAGCAAAAAA               GGAGT CGAA ACTCC                TTTTTAACAATGGGC  86 55
   Spaf_1553 NONE
   Spaf_1552 1571349 .. 1571369 - -14.1  -4.17906   AATCAAACGAAACAA            GGCTAGGAA GTT TTCCTAGCC            TTTATTTTTTTATAA 100 27
   Spaf_1550 1568142 .. 1568167 - -15.5  -4.76802   TCCAAAAACAATAAA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TCAGGTTTATTTCAT 100 32
        metB NONE
        patB 1565361 .. 1565387 - -12.4  -5.31456   GTAAGGCATAAAAAA         GAGTCCTACC CTCGATC GGTAGGACTC         ATGAAACTCGTCATT 100 252
        mgtA 1562485 .. 1562495 -  -2.6  -3.86202   TCTTATTATACCAAA                 TTTT ACA AAAA                 AAAGAGAGCCCTTAC  52 83
   Spaf_1546 1561667 .. 1561681 -  -2.8   -2.8916   CAAAAAAGGTCAAAT               CTAAAG CAC CTTTCG               GACTTATAATGAATG  42 47
        clpP 1560939 .. 1560957 -   -11  -5.23316   TATGAGAGCAAAAAA             GGCTAGAC ATT GCCTAGCC             TTGACGGACCTTCCC 100 51
   Spaf_1544 1560556 .. 1560579 -  -3.2   -5.7946   TTGTCAATAAAAAAA          GCGCAATCCAT CAA AT-GATTGCGT          TTTCTATCCTTCTGT  88 29
        livK 1559264 .. 1559295 -  -2.2  -2.89055   TCTAACAATAAAGAG      CGAGGCCAGGAA TTTTCATT CTCCCAGCCTCT       TGTACAAACAACAAA  41 47
        livH NONE
        livM NONE
        livG NONE
        livF 1555903 .. 1555932 - -12.4  -2.86651   AAACAAGCGAAGAAT       GAAAAGAAAGGT TCAATG ACCTTTCTTTTC        TATTTATTTTATCCA  84 34
        acuB 1555095 .. 1555120 - -12.7   -4.9792   TACCTTATAGAAAAA         TCAGACTGGAT GATC ATCCAGCCTGA          TTTTTTATTAAATAG 100 33
   Spaf_1536 NONE
        holB NONE
        yabA NONE
   Spaf_1533 NONE
   Spaf_1532 NONE
   Spaf_1531 NONE
   Spaf_1530 1549488 .. 1549515 - -15.8  -4.36914   TTCGCCGTGAGAAAA        GTGCTAGAAACA TTAT TGTTTCTAGCAC         TCGGGAGTTTTGAGA 100 162
   Spaf_1529 1547720 .. 1547737 -  -9.9  -4.72772   AAAAAATAATGAAAA             GAGAACC TCGC GGTTCTC              TTTTTGTGTTTACGT 100 35
   Spaf_1527 NONE
   Spaf_1526 NONE
   Spaf_1525 1543904 .. 1543922 -  -4.5  -5.06735   CAGAAAGCAGAAAAA             CAGCACC GAGTG GGCACTG             TTCTTTAGAGCTGTT  74 81
       ftsK2 NONE
   Spaf_1523 NONE
        yfgQ 1538513 .. 1538540 - -15.8  -4.36914   TCCGCCGTGAGAAAA        GTGCTTGAAACA ACAA TGTTTCAAGCAC         TCGGGAGTTTTGAGA 100 170
        rplK NONE
        rplA 1536640 .. 1536655 -  -6.8  -5.64274   TGACGTACAAAAAAA              GCTACC CGAA GGCAGC               TTTTCATTTCAATTA  93 38
        pyrH NONE
   Spaf_1516 1535144 .. 1535166 -  -6.2  -4.94962   ATAATGGAAATAAAA           CCCAGCCAGC AGT GCCAACTGAG           TCTTTCTTTCCTGTA  84 55
   Spaf_1514 NONE
   Spaf_1513 1533980 .. 1534008 -  -3.1  -4.36554   TATTATTATAACAAA        GAGGCCGAGAA AAAACCA TCCTCGACCTG        TCCTTTTCTAGTGGG  62 33
        phoH 1532913 .. 1532936 -   -14  -4.28656   ATCTAACATTCAAAA          GGCAAAGATC CGAT GATCTTTGCC           TTTTCTTTTATTCTT 100 33
   Spaf_1509 1530854 .. 1530878 -  -9.4  -5.42259   GGAGTCGCAAAAAAA          GAAGCCTAGA TCTTC TCTAAGCTTC          TCTCTTCTGCTATGC 100 161
   Spaf_1508 NONE
        msbA 1526809 .. 1526836 - -15.8  -4.36914   TCCGCCGTGAGAAAA        GTGCTTGAAACA GTAC TGTTTCAAGCAC         TCGGGAGTTTTGAGA 100 225
   Spaf_1506 NONE
        dgkA NONE
   Spaf_1504 1524801 .. 1524822 -  -6.5  -4.40561   CTTCTCTAAAAACAA           GAAGCAGGC TTCT GCCCACCTC            TTCTTAATATTCTTT  76 29
        mutM NONE
        coaE 1523301 .. 1523311 -  -4.6  -3.28472   TCCGATGAAAAAGCA                 CCCG ATC CAGG                 CAATATATAGATTTT  51 70
   Spaf_1501 NONE
        secG 1521699 .. 1521723 -  -7.1  -5.45802   TTTGCAAAATAAAAA          TAGGCAAAGAC ATT GTCTGAGCCTA          TCTTATTTACTAGAA 100 28
   Spaf_1499 NONE
        smpB 1518801 .. 1518826 -  -9.9  -5.77632   AAAACTATAAAAAAA         CAGTTCTGAAA CAAG TTTCAAAACTG          CCTTTTTCTTTAACG 100 35
   Spaf_1497 1516877 .. 1516902 -  -9.7  -4.63542   TACAAGTTGGAAAAA         GAGGCTCCACC CTCT AGCGGAACCTC          CTTGTTAGGATCTCA  91 162
        tehB 1515610 .. 1515626 -  -2.9  -2.87647   ATGCATTAGATGATA              CCCCTAA TGC TAAGGAG              CACATCATTGCAGAT  42 346
   Spaf_1494 1514202 .. 1514223 - -13.7  -2.89565   AAGCCCAGATAACTA           GCCAGCGCC TAAA GACGCTGGC            TTTCACTTTGTTCAA 100 233
   Spaf_1492 NONE
   Spaf_1491 1509118 .. 1509160 - -10.9  -5.01042   AACTCAAAGGAAAAA GATAAATCCAACTA-AAAGC GGAC GCTTCGTCGTTGGATTTATC TTTTTCCTTTGAGTT 100 59
   Spaf_1490 1507823 .. 1507834 -  -2.2  -2.80522   AGTCTATTGAACAAC                CGTC AAGG AACG                 ACTTCCGTTAATCCT  41 77
   Spaf_1489 1507290 .. 1507317 - -12.9  -5.15634   GATCTCAGCAAAAAA        GATCGAAGAAG GTTACA CTTCTTCGATC         TTTTTCTTATGAAAC 100 32
        ccpA 1500902 .. 1500929 - -14.3  -5.31275   TTGTAGTATAAAAAA        GAAGCCAGAAC CCATCT GTTCTGGCTTC         CCAGACTAGTAGACA 100 76
   Spaf_1483 NONE
   Spaf_1482 1498265 .. 1498288 -   -11  -5.46129   TAAGAAATCAAAAAA          GCGACCTCCT CGAA AGGACGTCGC           AACGTGGTTCCACCT 100 253
        thrS 1496182 .. 1496205 -  -6.1  -5.08367   AAGACAAAGCAAAAA          GACTGAGAT CGTTAC ATCTCAATC           TTTTCTTTTTGCATT  83 39
        vicR NONE
        vicK NONE
   Spaf_1478 1493165 .. 1493187 -    -7  -3.94773   TATTTAAAAAAGGAA           GCAACTAACA AGG TGACAGTTGC           TTTTCTCTATTTTAT  71 37
   Spaf_1477 1492643 .. 1492660 -  -4.1   -5.2422   AAGTATACCAAAAAA             GAAGCAC GAAC GCACTTC              TTTTCCTAGTTCTAG  74 59
   Spaf_1476 NONE
   Spaf_1475 NONE
   Spaf_1474 NONE
   Spaf_1473 NONE
        ftsY 1485050 .. 1485076 -  -8.9  -5.38326   GTAAGGAAATAAAAA         GACAAATTGTC CTTCC AACAATTTGTC         TTTTTCTATTTGACT 100 42
   Spaf_1467 1479021 .. 1479062 -  -7.5  -3.54741   GACGATTTTGCGAAA GACCTCTAACCCGAAAACTT GGT ATATTTTCGGGTT-GAAATC AAGGTGTCGATCCTT  69 141
   Spaf_1466 NONE
   Spaf_1465 1477936 .. 1477962 -  -4.5  -4.90013   TAAGGCAAGCAAAAA        GAGGTC-AAGAC AAAG GTCTCCAACCTC         TAGGAAATGATGGTA  74 57
        ptsK NONE
   Spaf_1463 NONE
   Spaf_1462 NONE
   Spaf_1461 1474880 .. 1474898 - -14.6  -3.86015   TAGCCCTGGTACAAA             CCACCCGT TTG ACGGGTGG             TCATGATTCACTCGA 100 377
   Spaf_1458 NONE
   Spaf_1457 1471363 .. 1471382 -  -3.5  -5.06816   ATCGCCCAACAAAAA            GGAGAGG TTTAAC CCTCTCT             TTTTTTGTTATACTC  70 33
   Spaf_1455 1470715 .. 1470733 -  -7.4  -5.44721   ACTATGGCAAAAAAA             GAAGTCCT TGA AGGACCCC             TTTTCTTAATTTTTA 100 31
   Spaf_1454 NONE
   Spaf_1453 1468654 .. 1468679 - -15.5  -2.79912   TCCAAAAACAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTTTGTTTAT 100 37
        hlyD NONE
   Spaf_1449 NONE
   Spaf_1448 1463660 .. 1463672 -  -3.3  -4.21314   AATAATATCTGAAAA                CTGTC GTT GACTG                CTTAAACTGTTTAAC  59 148
        lysS 1462003 .. 1462022 -  -7.2  -5.27779   TGGAAGACTAAAAAA            CACTGATC TTGC AATCAGTG             TTTTCTTTTAGCTTA  95 38
        ftsW NONE
   Spaf_1440 1455476 .. 1455511 - -20.8  -3.53444   TCACTTCCTTCCAAA    GCTAAAAAATCGGAAC AATT GTTCCGATTTTTTAGC     CTGAATTTCGTAATC 100 21
   Spaf_1439 1453973 .. 1453988 - -10.4  -5.50723   TTACCAAAATAAAAA              CCCCGT CTTC ACGGGG               TTTTCTGTCTGTCTA 100 71
        tpiA 1452850 .. 1452878 -  -8.3  -6.09196   CGTAAAATAAAAAAA        GTTGAAAAGGTTC CCC AAACCTTTTCAAT        CTTCCCACCCCCGCA 100 257
   Spaf_1433 1447647 .. 1447672 - -11.3  -5.24129   CTTTTGCACAAAAAA         GAGACCTGTTT GAAA AAACAAGTCTC          GCCGTTTAATATAGT 100 162
   Spaf_1432 1444886 .. 1444901 -  -5.4  -5.42259   TTACCCGCAAAAAAA              GCCATC CAAA GATGAC               TTTTTTTATGTTTAA  86 37
        prfB 1442555 .. 1442568 -  -3.9  -3.13728   ATCATTGACATGTAA               TGAAA TTCC TTTCA                TTCTTTTCTGGGTTA  48 52
        ftsE NONE
        ftsX 1440916 .. 1440931 -  -7.6  -5.74086   AAAGTAAACAAAAAA              GCAAGT GCGA ACTTGC               TTTTTAATTATATCT 100 33
        dinG NONE
   Spaf_1424 NONE
        rodA NONE
        thiJ 1434713 .. 1434743 -  -6.2  -5.03409   GGACAAAAAAAATAA       GCTAAAACCCAC ATTTAGG GGGGATTTTAGC       CATTTTTTACGGTCA  80 124
   Spaf_1421 NONE
        gyrB 1432108 .. 1432118 -  -2.6   -3.1886   ACGTAATCCTAGTAA                 TTAT ACC ATAA                 AATATCCATTAATGG  45 58
        ezrA 1430311 .. 1430328 -  -6.3  -5.46629   AAGATTGTAAAAAAA             TGACCTC CTAA AAGGTCA              TTTTTCTGTTATTAG  91 37
        serB NONE
        glxK 1428421 .. 1428451 - -13.4  -5.30616   TTAGCTAAAGAAAAA       CCAATGGAAGGGAA CAT CTCCTTTCCATTGG       TTTTTTAGTTTGCTT 100 30
   Spaf_1415 1426401 .. 1426424 -   -14   -5.0538   GCTGATCGCAAAAAA          GATCCTTGAG AAAA CTCAAGGATC           TTTTTAGTCTAGTAT 100 47
   Spaf_1412 NONE
   Spaf_1411 NONE
        alsD 1421678 .. 1421696 - -13.2  -3.92592   ATCTTCAATACGAAA             GGTTGAGC TAC GCTCAACC             TTTTTATTCTGCTTT 100 29
   Spaf_1408 NONE
   Spaf_1407 1417407 .. 1417445 -   -11   -5.4492   CAGACATAGAAAAAA   CCACGCGCCAACACCC ACATTCG GAGCGTTGACACGCGG   TACCATCCGTTTTTT 100 262
        pheS NONE
   Spaf_1405 1415737 .. 1415751 -  -6.4  -3.05963   ATTCTGATCGTAAGA               TCCCAC TAG GTGAGA               CCTTTTCAATTCCTT  60 62
        pheT 1413278 .. 1413300 -  -8.5  -5.39755   GATAAGCATAAAAAA           CAGCTGAGA GCATG TCTCAACTG           TTTTGATCTACATAT 100 40
   Spaf_1400 NONE
   Spaf_1399 NONE
   Spaf_1398 NONE
   Spaf_1397 NONE
   Spaf_1396 NONE
   Spaf_1395 1405815 .. 1405836 -  -5.8  -4.15453   CAATGCATGCTAAAA           GCCCCCAG CAATAT CTGAGAGC            TTATCTAATTAGCGA  67 34
   Spaf_1394 NONE
   Spaf_1393 NONE
   Spaf_1392 NONE
   Spaf_1391 NONE
   Spaf_1390 1403195 .. 1403216 - -10.1  -4.86621   ATTTGCAATCAAAAA           GCCCCCAGC TGTA ACTGGGAGC            TCTCTGGTTGAAGTA 100 48
   Spaf_1387 1402175 .. 1402192 -  -2.7  -3.79071   CCGATAAGAGTGAAA             TCTGGTT TACT AACAAGA              TTCTAAGGCAAATCA  50 28
   Spaf_1386 NONE
   Spaf_1385 NONE
   Spaf_1384 1399543 .. 1399557 -  -8.6  -4.08945   AGTAGGGCTGTAAAA               GCTGAT GAA ATCAGC               GTAGTAGAGCCCACT  81 112
        glpQ 1397313 .. 1397325 -  -7.7  -4.78933   TCAAAACACACAAAA                TTCCC TGA GGGAA                AGACCCTAGGGATTA  88 324
   Spaf_1382 NONE
   Spaf_1381 1393597 .. 1393616 -   -10   -5.1925   CCATAAGCCAAAAAA            GCCTGAGC CAAT GCTCAAGC             TTTTTTTCTTTAATC 100 35
   Spaf_1380 1391861 .. 1391896 - -12.2  -5.48303   ATAAGCGTAAAAAAA    GATAAGAATGATATTT GAAT AAACATCATTCTTACC     TTTTTCTTATGGTAT 100 336
   Spaf_1378 NONE
        rexA NONE
   Spaf_1375 1383761 .. 1383788 - -15.8  -4.36914   TCCGCCGTGAGAAAA        GTGCTAGAAACA CTTT TGTTTCTAGCAC         TCGGGAGTTTTGAAA 100 196
        miaA NONE
        hflX NONE
   Spaf_1371 NONE
        elaC NONE
   Spaf_1369 NONE
   Spaf_1367 NONE
   Spaf_1366 1377596 .. 1377617 - -10.1  -3.77303   CATTCAAATAGATAA           GGCTGGGAC AAAA GTCCTAGCC            TCTCAATTATTTTTG  84 176
        recJ 1375157 .. 1375167 -  -2.4  -3.97102   AGCTAAAAGCAACAA                 GGGC TGA GCCA                 GAGGAATTTTATTAG  51 49
   Spaf_1364 1374864 .. 1374877 -  -5.3  -3.38224   ATCGTATTTGAAAGA               CATAC GAAC GTATG                CATTTTAGTTTAGAT  57 83
   Spaf_1363 1374558 .. 1374583 -  -9.1  -4.82855   CATCAAATGCAAAAA         TCCCACATC CGAAAAAT GATGTGGGA          TTGGGTTCCAAAAAA 100 45
   Spaf_1362 1373836 .. 1373879 -  -4.8   -4.8543   TAATTGGCATAAAAA GCTCCCATCTTACAA-GTT CTTAACT AACATTATATGATAGGAGC TTATAGTTTTCAATT  74 78
        metA NONE
        dnaD NONE
   Spaf_1359 1370955 .. 1370977 -  -4.2  -5.42514   CTATAAATGAAAAAA          CTAGCGCCT GATGAA AGG-GCTAG           TTTTCTGTTTTATTT  81 35
   Spaf_1357 1368869 .. 1368895 - -13.9  -4.42386   TCTGCAGTGAGAAAA         GTGCATGAAAC TTTTT GTTTCATGCAC         TCGGGAGTTTTAAAA 100 131
   Spaf_1356 NONE
   Spaf_1355 NONE
   Spaf_1354 1366098 .. 1366119 - -12.3  -3.43826   CAAAAACAATTAAGA           GGCTAGGAC TTTT GTCCCAGCC            TACTTCTTCACATAT  89 25
   Spaf_1353 1365019 .. 1365047 -  -6.7  -5.36441   TGTTTATATAAAAAA        GTCACCTTGCATC TAT GTTACAAGGTGAT        GTTCTTTATCCCAAA  91 137
     cps19fN NONE
     cps19fO 1363340 .. 1363363 -  -8.2  -2.70932   GCCCGTGTTCAATTA          GTTTTGAGCC TAGT GTCTCAAAAC           TTCCGACCACCTGAA  65 161
     cps19fL 1362013 .. 1362036 -  -9.6  -4.69464   AAAATATCTGAAAAA          GTCCAAGCGA TTTT CCACTTGGAC           CTTCTTCATTATTTC  91 34
   Spaf_1349 1360624 .. 1360636 -  -7.7  -5.12068   CAGACTGAAGAAAAA                GTCCA TTT TGGAC                AATTTTCTTCAGTCT  93 195
   Spaf_1345 NONE
        frdA 1354865 .. 1354882 -    -7  -5.27335   TTTTTCAAATAAAAA             GTCACC GAATTT GGTGAC              TTCATTAGGAGATTA  95 252
   Spaf_1343 NONE
   Spaf_1342 1352598 .. 1352612 -  -8.6  -4.08945   AGTAGGGCTGTAAAA               GCTGAT GAA ATCAGC               GTAGTAGAGCCCACT  81 352
   Spaf_1340 NONE
        dnaX NONE
   Spaf_1338 1350021 .. 1350048 - -10.8  -6.04419   AAAACAAGAAAAAAA        CCTTTGAAAAAA GATT TCTTTTCAAAGG         TTTTATTTTCTTTTC 100 28
   Spaf_1334 NONE
   Spaf_1333 NONE
   Spaf_1332 1343166 .. 1343188 - -14.9  -2.84098   TCCTCTAAGGAAGCA           CTCAGGGGC TCTAC GCCCCTGAG           TTACTTACTTGAATC 100 55
   Spaf_1331 1342133 .. 1342155 - -13.6  -5.22289   TATGAAATAGAAAAA           GTTTCCTAGA TTT TCTAGGAAAC           TTCGGATTGAGAAAA 100 345
       vexp1 NONE
   Spaf_1329 NONE
       vexp3 NONE
        vncR NONE
        vncS 1336617 .. 1336642 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTCTTTTCTATTAGG 100 65
        galA NONE
        msmE NONE
        msmF NONE
        msmG 1326266 .. 1326277 -  -4.4  -3.70417   AGGATACGATTGAAA                TCAG CAAG CTGA                 ATCGTCCCTTTGTAT  57 49
   Spaf_1317 1324683 .. 1324705 -  -7.1  -5.28983   TCTAAAACAGAAAAA           GGATAAGCA TTTTT TACTTATCC           TTTAGTTCGTTCATA  95 46
       nagZ3 1322132 .. 1322159 - -12.9  -5.14965   AGTTTTACCAAAAAA        TCTCAATTGGG AAATCA CCCAATTGAGA         TTCTTCATTCATTAG 100 37
        galK NONE
        pgmB NONE
        galT NONE
        galE 1317475 .. 1317494 -  -2.2  -3.55761   GACTGACGTCTGAAA            TGAGTCCTG TAG CAAGA-TCA            ACTGTAGATATAGAT  47 82
   Spaf_1311 1316808 .. 1316832 - -11.5  -5.46706   ATTCTAAAACAAAAA          GAGAGCAGC AAACTGA GCTGCTCTC          CATTTGGTTTATTTT 100 34
   Spaf_1309 NONE
   Spaf_1308 NONE
   Spaf_1307 NONE
   Spaf_1306 NONE
   Spaf_1305 1310424 .. 1310452 -  -5.4  -3.63655   TGAGAATTAAAGCAA        GAGCTTACCAAT ACTTA ATTCGTAAACTC        TTATTTATTTCAATT  58 65
   Spaf_1304 1309881 .. 1309896 -  -2.6  -3.17075   TCTGTGTCAATTTAA              TTAAAG AGTT CTCTAA               TAATAATTGTATGTT  45 353
   Spaf_1303 NONE
   Spaf_1302 1308063 .. 1308078 -  -7.6  -5.15634   TAGTTTATGAAAAAA              CTACTC CGAA GAGTAG               TTCCAATTTTTAATC  93 35
   Spaf_1301 1305786 .. 1305811 - -13.3  -4.91712   TCGAATGCATAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 193
        argG NONE
        argH 1302878 .. 1302899 -  -9.5  -4.87133   ATGCTCCAAATAAAA           GCATCGTAA ATTT TCACGATGC            TTTCCTTATTTTAGT 100 36
   Spaf_1296 NONE
   Spaf_1295 1299201 .. 1299227 - -16.8  -2.61264   TCCTTTATCCACAAC         CTTCAACAGTCT CCC AGACTGTTGAAG         CTATACGGGGGTGGG 100 112
   Spaf_1293 NONE
        rocB NONE
   Spaf_1290 NONE
   Spaf_1289 1289903 .. 1289928 - -13.3  -3.18292   AGTTACCACTAAAAT         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA  95 179
   Spaf_1287 1288330 .. 1288343 -  -8.1  -4.14243   CAGTTTACTTTAAAA               CCACC TCTC GGTGG                TGATTACTTTTTCTT  79 29
   Spaf_1286 1287647 .. 1287672 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTGTTAGAGTTCC 100 31
        thrA NONE
        thrB 1284234 .. 1284255 -  -4.5  -5.33848   AGGAGAAGCAAAAAA           GACATATAC ATTC GTATACATC            CTTCTTTCATTTGTG  81 53
   Spaf_1282 1283181 .. 1283205 -  -5.7  -5.42198   CCCTAAAAAACAAAA          GAAGACCTATA ATA TTCAGGCCTTC          CTTTTATCATTCATT  86 39
        murB 1282054 .. 1282082 - -11.8  -2.82666   TCAAACGAAAACGCA       GCGG-CTGACAGG AAGA CCTGTCAGACCAC        CAATACCTCTCGGGG  82 147
        potA NONE
        potB NONE
        potC NONE
        potD 1278192 .. 1278207 -    -9  -4.90013   TAAGGTAATCAAAAA              GGAACC CGAA GGTTCC               TTTTGTGTTATTTCC 100 33
   Spaf_1276 NONE
   Spaf_1275 1277042 .. 1277052 -  -3.2  -3.85698   TTCGTTTTTGATAAA                 CTCC AGT GAAG                 TCATTAAGATATTCT  55 104
   Spaf_1274 1276495 .. 1276517 -    -2  -3.64103   GACTCATAGCTCAAA           TTCTTTCC TCTTAAT GGATAGAA           TGATCTGTTGATTTT  47 42
Spaf_igr1273 NONE
   Spaf_1273 1275647 .. 1275668 -  -4.4  -4.96501   GTTCACAAAAAGAAA           CCGATAGC TCATCT GCTACCGA            ATCTAGTTCATCTGC  74 90
       iscS2 NONE
        thiI 1272675 .. 1272714 -  -8.8  -4.80455   CATTCAAATAGAAAA  CACCCCAAAAG-CAAGATG TTT CATCTCAACTTTTAAGGTG  TAGTTTATTCATTTA 100 53
   Spaf_1268 NONE
   Spaf_1267 NONE
        fbp3 1266199 .. 1266213 -  -4.3  -3.85817   ATTTTCTTGGACAAA               TGACT TCAAC AGTCA               TAAAATTCATGTAGC  59 16
        rplU NONE
   Spaf_1264 NONE
        rpmA 1264803 .. 1264824 -  -9.5  -5.67711   TAAATAAAAGAAAAA           GCCTTCTGA CAAA TCAGAAAGC            TCTAATTTTGCTATT 100 97
        lacR 1263909 .. 1263930 -  -5.9  -5.25735   TTAAAAAAGCAAAAA           GTGGTCTTCC ATA AGA-GACCAC           TTAGTTTTATATGAT  89 32
        gatA NONE
        gatB 1262833 .. 1262849 -  -3.8  -3.36803   TAATGCCATTCATAA              TAAATC CTCCC GATTTA              TGAATTTTTTGTAAT  50 105
        gatC 1261305 .. 1261329 - -11.6  -5.61881   TTTTAAAAATAAAAA          CACCATATCT AGAAA AGATATGGTG          TCAGTTTTCAAACTA 100 51
        lacA NONE
       lacA2 NONE
        lacC NONE
        lacD 1258196 .. 1258243 -  -8.6   -4.7339   AACAAAGCCTAAAAA TAATGAAGAACATTGGAAGGAA TTTC TTCCTTCCAATGTTCTAAATGT TGCTTTAGGAGGCAA 100 55
        lacT NONE
       lacF2 NONE
        lacE 1255023 .. 1255064 -  -3.8  -4.58773   TGGATCAAAGGAAAA GTGAG-TGGAGAGGAGTTAG TGAG CCATC-CATCTCCATCTCAC TTATTCGTTCTTATT  66 36
        lacG 1253552 .. 1253574 -    -7  -6.20267   GTAAAAATAAAAAAA           GCTGGAACTA AAA CAGTTCCAGT           TGATACTTATTCAAT 100 32
        lysR NONE
        lspA NONE
       rluD2 1251138 .. 1251164 - -11.1  -4.07568   TGCGGGTTGGGAAAA         TTGAAAAGGTT TAGGG AACCTTTTCAA         CCTTTTTATTTTTAA  89 66
        proB NONE
        proA NONE
        proC 1247340 .. 1247367 - -15.8  -4.36914   TCCGCCGTGAGAAAA        GTGCTAGAAACA CTCT TGTTTCTAGCAC         TCGGAATTATTGAGA 100 328
        hemN NONE
   Spaf_1242 NONE
   Spaf_1241 NONE
   Spaf_1240 NONE
   Spaf_1239 NONE
   Spaf_1238 1240407 .. 1240428 -  -3.6  -5.27779   TTTAATAGCAAAAAA           GAGGGGTC TAAAAG GATCCCCC            TTTGATAATACTTAT  78 37
   Spaf_1237 NONE
   Spaf_1236 NONE
   Spaf_1235 NONE
   Spaf_1234 NONE
        pepV 1235335 .. 1235357 - -11.3  -4.65895   CCTTCTATGGAAAAA           CTCAGCCAG AAAAA CTGGCCGAG           TAGTGGATTATTTGA  95 33
   Spaf_1232 NONE
        ybaK NONE
   Spaf_1230 1233742 .. 1233767 -  -8.9  -4.54253   AAATTAGTAAAGAAA         GTGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA  90 177
   Spaf_1229 1232436 .. 1232459 - -13.2  -2.90028   CTCATTATAAAATAG          GGAAAGTGGG TTCC CCCACCTTCC           GTTTTGTGATATTGT  90 40
   Spaf_1228 NONE
   Spaf_1227 1229354 .. 1229376 -  -6.2  -5.14645   ACAATCCAATAAAAA           GGTTGGTGAT TTT AACCCCAACC           TCAGATTGTAGACAA  83 479
        rsmC NONE
   Spaf_1222 NONE
        deoC NONE
   Spaf_1220 1224469 .. 1224480 -  -5.8  -2.82595   GCGAAGTATTGAAAG                GGTC AAAA GACC                 GCCCCACAGACCCAT  55 40
        bmpA 1223250 .. 1223305 - -13.8  -3.04398   GTTTCCTTTCAAAAT TTTTTTATTTCAATAAAATCTGCTAG GTGA CTAACAGATTTTATTGAGACAAAAAT GTCTCACTTTAAAAG 100 78
   Spaf_1218 NONE
   Spaf_1217 NONE
   Spaf_1216 1219652 .. 1219675 -  -8.2  -5.38054   CTTTACAAAGAAAAA          GAGAC-CGAGG AAA CCTCGCATCTC          TCTGTGCATTATTTC 100 34
   Spaf_1215 NONE
        cutC 1218234 .. 1218256 -  -8.4  -3.27475   TTTTGCACTAGAAGA           GGCTGGAAAC AAC GTCCCCAACC           TTGATAACGGATCCT  69 73
   Spaf_1213 NONE
   Spaf_1212 NONE
   Spaf_1211 1214004 .. 1214030 -  -6.1  -5.47159   TTCAAGAAAGAAAAA        CAAGG-TTAAAT TTGC ATTTAAACCTTG         TTTATCCTTATTTCA  91 33
   Spaf_1210 1213665 .. 1213695 -   -20  -3.01712   CCTTTTTTTGCAAGA       GAAACCCTCGTATA GAT TATACGAGGGTTTC       TCTTATTTCTTCCAT 100 28
   Spaf_1206 1210372 .. 1210390 - -14.6  -3.86015   TAGCCCTGGTACAAA             CCACCCGT TTG ACGGGTGG             TCATGATTTATTCTT 100 33
   Spaf_1203 NONE
   Spaf_1202 1207142 .. 1207166 -  -7.2  -5.27335   TTTTTTAAAGAAAAA          GATCCTCAGC TCATT ACTAAGGATC          TTGTAATTTTATTTT  95 34
        asnS 1205648 .. 1205674 -  -8.9  -4.62984   GGAGCAGATATAAAA        GTTAAAAACGCC TAAT GGCGTTTTT-AC         GTCTATTAAGGCTTG  90 31
   Spaf_1200 1204840 .. 1204860 -  -4.1  -2.92175   TTTCAATAGATTATA            TAAGTGTTT CTA AAAGACTTA            CTTAGATTTGCCTAC  46 37
   Spaf_1199 1203560 .. 1203582 - -14.2  -5.27779   CTTAAGATGAAAAAA           CTCTCCCTGC ATA GCAGAGAGAG           TTGAATACTGACCAG 100 57
   Spaf_1198 NONE
   Spaf_1197 1199861 .. 1199888 - -12.9  -4.36914   TCCGCTGTGAGAAAA        GTGCTAGAAAC AAATCA GTTTCTAGCAC         TCGGGAGTTTTGAAA 100 169
   Spaf_1194 NONE
   Spaf_1193 1195468 .. 1195487 -  -3.5  -5.03994   CCTCACATAGAAAAA            GACCAGC TCAAGT ACCGGTC             TTCATTTTCATCATC  70 49
   Spaf_1192 NONE
   Spaf_1191 NONE
   Spaf_1190 NONE
Spaf_igr1189 1191638 .. 1191652 -  -2.8   -4.6951   ACTATCTAAAAGAAA               GCCTCT CTG AAAGAC               GATTGTTTTCTGTGT  62 40
   Spaf_1189 1191337 .. 1191353 -  -4.5   -2.8294   TATTTTGTAGAACGA              TCAAATC CTT GATTTAA              CAGCGTTTTAAGCAC  48 33
   Spaf_1188 NONE
   Spaf_1186 NONE
Spaf_igr1185 1187848 .. 1187859 -  -4.4   -2.9661   GAATCATGTACAAAT                TGGT TAAA ACCA                 CTATCTAAATACGAA  50 91
   Spaf_1185 1187112 .. 1187127 -  -7.6  -5.32944   CTTAGAAGCAAAAAA              GCTAGA TCGC TCTAGC               CCTCGGTTTAAAATC  95 33
        paaI NONE
   Spaf_1183 1185847 .. 1185864 -  -8.4  -4.86621   ATTTTCAAGTAAAAA             GGAGGC AACTTG GCCTCC              CTACATGGATGATAT  95 43
        phnA 1185215 .. 1185226 -  -7.2  -4.86731   TCTCCTGAAAGAAAA                GGGG GTAG CCCC                 TTCAGTTTAATCAGG  83 218
   Spaf_1181 1184325 .. 1184342 -  -9.9  -5.45802   GTTGTAAAAGAAAAA             CCTCCTT TTTC AAGGAGG              TTCAGCAAATGAATG 100 242
        pyrR NONE
        pyrB NONE
        carA NONE
        carB 1179823 .. 1179861 -    -9  -4.84182   CCAAAAAATAAGAAA   CAAAAAAGGATTCGGA TTGATTG TCCGGATCCTTTATTG   TAGATTAGAAAGCTT 100 20
   Spaf_1172 1176371 .. 1176388 -  -5.6  -5.58179   CATTATAACAAAAAA             GATAGG GCTTTG CCTATC              TTAATTCATTATTTT  88 26
        lepA 1174471 .. 1174487 -  -7.2  -5.10163   AAGTCTAAAACAAAA              GCGCCC TCTTG GGGCAC              CTTAAATGTTATTCT  90 34
   Spaf_1170 1173669 .. 1173688 -  -9.4  -5.46629   AAGACTCTAAAAAAA            GATAGATC CTGA GATCTATC             TCACTTGATTAATCC 100 34
   Spaf_1169 NONE
   Spaf_1168 1172392 .. 1172416 -  -4.3  -2.91507   AACACATTTTATAGA          CCTGTCAAG AAAAAAA CTTGACAGT          ATTTAAAATTTTTTA  48 38
        rpsP NONE
   Spaf_1166 1171753 .. 1171767 - -11.4   -5.7946   CTTCCAACAAAAAAA               CGGGAC CAA GTCCCG               CCTTTTTATTTTTCG 100 31
        rimM NONE
        trmD 1170395 .. 1170423 -  -8.4  -5.50723   CTAGTAAAAGAAAAA        GATTAAAGAAAA TTACT TTTTCTTCAATC        TAAAAATGCTGACAC 100 43
   Spaf_1163 1167679 .. 1167723 - -10.2  -5.28826   AAAGTGTACAAAAAA GAGTGGG-AATGAACTCATTT TGTT AAAAGAGTTCTTTTCCCACCC TCATAAGGTTTCTTC 100 102
        fruR NONE
        fruK NONE
        fruA 1163917 .. 1163934 - -11.3   -5.4505   TTGCGCAATAAAAAA             GGTTGGG CAGT CCCAACC              TTTTAGTCATGTTTA 100 38
   Spaf_1157 1163332 .. 1163342 -    -4  -3.17334   CCAAATCAATATAGA                 TCAA CAA TTGA                 TTCACTAGTTGGTGT  48 60
   Spaf_1156 1162755 .. 1162770 -  -4.6   -4.9645   AGTACAAGAAGAAAA              GGTTGG GTGA CCGACC               TGATAATCCAGCAAA  74 111
   Spaf_1155 NONE
   Spaf_1154 NONE
        dapB NONE
   Spaf_1152 NONE
   Spaf_1151 NONE
   Spaf_1150 1157024 .. 1157037 -  -3.1  -3.53563   AGACTTTTTGTCAAA               CGCAA AGGT TTGCA                CGTAACTTTTCTCAA  50 37
   Spaf_1149 1155966 .. 1155992 -  -5.9  -6.02919   GGACAAAGAAAAAAA        GGAGATGCAAGC ATCT GCTAG-ATCTCC         TACTTGACGTCTCAT 100 37
        thyA 1154970 .. 1154986 -  -9.4  -5.59879   TACAAACAGAAAAAA              CCGCGA GGAAT TCGCGG              TTTTTCTTAGCCACA 100 110
        folA NONE
   Spaf_1146 NONE
        clpX NONE
        engB 1152281 .. 1152296 -  -6.2  -5.49568   AATCCAAAATAAAAA              TGACAT TTTC ATGTCA               TTTCAATTTATTTCG  91 28
   Spaf_1143 1151423 .. 1151437 -  -6.4  -5.96219   CATCTACAAAAAAAA               GCAGAC CAT GTCTAC               TTTTTTTGTATCAAT 100 36
   Spaf_1142 1150305 .. 1150324 -  -4.2  -5.45802   TTTCCAAAAGAAAAA            CGCGCCCA AACC TAGACACG             AAAGTACAATACGCT  84 186
        rplJ NONE
        rplL 1149179 .. 1149204 -  -7.6  -5.65496   TATTAAAAAGAAAAA         CCCTGCCAAA TTAATT TTTGGTAGGG          TTTTTGGCAGGAAAC 100 128
   Spaf_1139 NONE
        repA NONE
   Spaf_1137 NONE
   Spaf_1136 1146273 .. 1146286 -  -6.7  -2.84059   GATAGAGATCAATCA               TGGGA GACC TCCCA                AAGATTCGATTGCAT  58 5
   Spaf_1135 NONE
   Spaf_1134 1144949 .. 1144985 - -11.9  -3.85698   CTCCTTTCTTAGAAA    TAAAATGCTAACACCTA CTA TATATGTTAGCATTTTA    TTTCTTTAAAATCAA  93 97
   Spaf_1133 NONE
   Spaf_1132 1143466 .. 1143493 -  -6.4   -5.7946   GTTGGAATAAAAAAA        GCAACTCACT-GC TTT ACGAATGAGTTGC        TTTTGTACTAAAATA  93 33
   Spaf_1131 NONE
   Spaf_1130 NONE
        traG NONE
   Spaf_1128 NONE
   Spaf_1127 1139395 .. 1139420 - -10.5  -4.56597   TTTCCTTTCTAAAAA         GGCTAAGAAGC AATC ACTTCCTAGCC          TTTATCTAATTACAT  95 35
   Spaf_1126 NONE
   Spaf_1125 NONE
   Spaf_1124 1133795 .. 1133847 -  -3.7  -5.95449   AAAGAAAATAAAAAA GATTTAAAATTCTTTGCCCTATTTC AAG AAGATAGCAAATAGAATTTTAAATC TTTATAGAACCTAAA  90 63
   Spaf_1123 NONE
   Spaf_1122 NONE
   Spaf_1121 1131453 .. 1131470 -  -7.7  -4.92314   ATTAACTGAGAAAAA             GACAGGA TAGC CCCTGTC              TTTAGCGTATATTTC  89 27
       nisR2 NONE
       nisK2 1129373 .. 1129399 - -12.4  -5.40004   TATTAAAGTAAAAAA         GATGACTTACAG AAC CTGTAAGCCACC         TAGTCAGTCGGTTTA 100 291
   Spaf_1118 1128800 .. 1128823 - -10.4   -4.3586   TCATCTATACGAAAA          TAGGAGAATC ACAT GATTCCCCTA           CAACTCTATCTCCAT  90 23
   Spaf_1117 NONE
   Spaf_1116 NONE
   Spaf_1115 1121855 .. 1121882 -  -8.6  -5.12617   CAATTAGGCAAAAAA        TGGAGAAGAACCC TCA GAGTT-TTCTCCA        TTTTTTTCATCTTAT 100 32
        sboA 1119415 .. 1119425 -    -4   -5.1356   TCTTATCAACAAAAA                 TGAT AGA ATCA                 ACATAATTCACAATA  74 60
        sboF NONE
        sboE NONE
        sboG 1116895 .. 1116908 -  -6.7  -5.22006   TTATCACAATAAAAA               GACTC CGAA GAGTC                TTCGCATTACTTATG  86 32
   Spaf_1108 NONE
   Spaf_1107 NONE
   Spaf_1106 NONE
   Spaf_1105 1114404 .. 1114421 -  -6.3  -5.41746   AACCTCTCAAAAAAA             GCAG-CCT ATC AGGACTGC             TTAGTACAATTCGGA  89 26
   Spaf_1104 1114094 .. 1114111 -  -7.7  -5.35224   TTTAGAAAAATAAAA             CGCACCA TTTT TGGTGCA              TTATTTATTATTTTT  95 26
   Spaf_1103 NONE
   Spaf_1102 1112797 .. 1112807 -  -2.6  -3.90316   ACTCTCCTAAAAATA                 TAAA TTG TTTA                 TTTTTCAAGTAATTC  52 23
   Spaf_1101 1110246 .. 1110267 -  -5.9  -5.80003   CGAACAAAGAAAAAA           GTAGGCTAA ATTT CTAACCTAC            TTTTTCTGGCTCTAC  93 37
   Spaf_1100 NONE
   Spaf_1099 NONE
   Spaf_1098 1106417 .. 1106427 -  -2.6  -3.68244   ACGAGCAATCCTAAA                 TATT ATT AATA                 ATGCAATTGACCATT  50 364
   Spaf_1095 NONE
   Spaf_1094 NONE
   Spaf_1093 1101698 .. 1101717 -  -2.2  -3.51394   AATTAAATAAATATA            TTATTAAC TATT GTTAATGA             TTAATAGTGTAAAAC  47 325
   Spaf_1092 1100149 .. 1100181 -  -2.1  -4.21345   AACAAATAAAAAAAT      TTCCTTATTTTCA AACTAAA TGAAATTAAGGAG      TTTTTTTTCTAAAGC  56 18
   Spaf_1091 NONE
   Spaf_1090 1098340 .. 1098357 -  -5.5  -5.66684   GAATGCACAAAAAAA             CCGAGAC CTAA ACCTCGG              TTTTCATTTTGATTG  88 116
   Spaf_1089 1097695 .. 1097721 -    -6  -3.92625   CACACGGCAATGAAA         TATTACAAATGT AAT ACTCTTGTAATA         TATTTATCAACTAAT  65 83
   Spaf_1088 1097150 .. 1097168 -  -6.7  -5.54403   AAAAAAGAAGAAAAA             GAGCAGA TACTC TCTGCCC             TTCTCTTGTATTATT  93 36
   Spaf_1087 1096590 .. 1096607 -  -9.1  -4.65819   AAAAGTAAAGCAAAA             GAGCAGG TTTC CCCGCTC              TTCACTTTCATTATT  90 36
   Spaf_1086 NONE
   Spaf_1084 1092880 .. 1092906 -   -11  -4.61868   GATTTATATAGAAAA         GAGGTTGAGA AATCCAG TCTCAACCTC         CTTAGTTTATTCCGC  95 32
   Spaf_1083 NONE
   Spaf_1082 NONE
   Spaf_1080 1089720 .. 1089739 - -10.8  -5.66684   CAAGGTACAAAAAAA            TCCTGATC CGAA GATCAGGA             TTCGAGGCACCTTTC 100 195
   Spaf_1079 NONE
        lemA 1087999 .. 1088018 -  -4.3   -5.3671   AACAGAAGGAAAAAA            TCCTGAT TCTAAG ACCAGGA             TTTTTAATGGTTATT  81 57
   Spaf_1077 1086696 .. 1086718 -  -2.7  -5.09685   TAAGACATAGAAAAA           CCTTTCTCT ATATA AGAAAGAGG           CTGGGGCTTGCTTGC  70 135
        dapA 1085610 .. 1085636 -  -9.6  -3.14795   AAATTTTCATGAACA         CTCCATTTCCTT TAT AAAGAAATGAAG         ACCTACTACTTTATT  75 142
   Spaf_1075 1085207 .. 1085226 -    -5  -5.02231   TAAAAATACTAAAAA            GAAGCCAC CGAA GTAACTTC             TATTTTATATTCTAG  76 37
   Spaf_1074 NONE
        rnhB NONE
   Spaf_1072 1082577 .. 1082592 -    -4  -6.17669   AAGAAAAGAAAAAAA              GCTCTA TTTC TAGAAC               TTTTTTTGATGTGCA 100 19
   Spaf_1071 1081660 .. 1081675 -    -4  -2.56343   ATGTCAACTAGGAAC              TTCTCC TATA GGAAAA               TCACAATTCGTATTT  45 26
        topA 1079439 .. 1079484 - -11.5  -5.36314   GAAAATACCAAAAAA TGTCTATTATAACAGACATTT ATAA AAATTGCCGTTATAATAGACA TTGAATCATTTAAAA 100 43
   Spaf_1069 NONE
   Spaf_1068 1077983 .. 1078007 -   -10  -4.90917   AAAGCCAAGTAAAAA          GACAGGGAGG TTTTT CCTTCCTGTC          TAGACTTTAACTATT 100 48
   Spaf_1067 1076500 .. 1076530 - -12.1   -3.3197   ATACCATTTTTAGAA       GAAAAAGTCTGGA TTTTC TCCAAACTTTTTC       CTTTCTTGGGTTATT  89 36
   Spaf_1066 NONE
   Spaf_1065 NONE
   Spaf_1064 1073622 .. 1073644 - -12.8  -5.38047   TAGTCACATAAAAAA           CCGATAGGAT CCT ATCCTACCGG           TCGTCATCTTATGAT 100 34
        pdhA NONE
        pdhB 1071369 .. 1071413 -   -11  -2.62442   ATCTAAGATATTAAG GACGCAGAGAACTTTGTACCT AAAA AGATACAAAGTT-TCCTCGTC TAATTCAAATGATAT  78 61
        pdhC NONE
        pdhD 1068307 .. 1068334 - -14.4  -4.81083   CTGAAGTAGTAAAAA        GAAATGTAACGA GTTA TCGTTACATTTC         TCGGAAAAATTGAGA 100 128
        lplA 1067188 .. 1067209 -  -6.5  -5.03715   ACTAGTTTCAAAAAA           GAGAACCGC TTCT GCGAATCTC            TTACGGCTTTATTCC  82 34
   Spaf_1058 NONE
   Spaf_1056 1064205 .. 1064237 - -10.8  -3.89291   TTAATATTAGAATAA      GAGCGTAAGATT TATTTAAGG AATCTTACGCTC      TTTTATTAATTATAT  89 149
       guaA2 1048006 .. 1048018 -  -9.1  -5.75342   GGCTCGTAAAAAAAA                GGTCC ACT GGACC                TTTTTTTTATTCCCA 100 32
   Spaf_1036 1046603 .. 1046623 -  -3.4  -3.72324   GATTTTGAGGAATAA            TAAAAATG TCATG CATTCTTA            AAAAAACTGTAAGCT  52 13
   Spaf_1028 1040194 .. 1040230 - -15.4  -6.23317   AGAAAAATAAAAAAA   GCCTTTCCTGCTATGTG ATAT CACA-AGCAAGAAAGGC    TTTTTTAGTGGAACC 100 42
   Spaf_1021 NONE
        apbE NONE
   Spaf_1011 NONE
   Spaf_1010 1021683 .. 1021699 -  -6.6  -5.88565   GTTACAATAAAAAAA              TGAAGC ACGAG GCTTCA              TTTTTTTATGGTTTC  93 41
   Spaf_1005 1017576 .. 1017627 -  -9.7  -4.41114   CCACTAGACAAGAAA GGGAGTGGGAA-A-GAACTCTGATT AGTT AAAAAGAGTTCGTCTTCCCACCCCC GCACAGTTGATTAGG  91 150
        dinF 1015523 .. 1015550 - -11.4  -4.72846   CTAGATATCTAAAAA        CAACTTCTGTTC AAAT GAGCAGAAGTTG         TTTTGGTCTTATTAA 100 48
   Spaf_1001 NONE
   Spaf_1000 NONE
   Spaf_0999 1011844 .. 1011865 -  -5.9  -5.55664   TCACCATCAAAAAAA           GCCAAGA TAAATTGG TCTTGGC            TTGAAAGGTTATTTT  91 34
        manB 1009977 .. 1010002 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          GTGTTTTAGCCTACA 100 31
   Spaf_0996 1009361 .. 1009386 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          AATTTTTTTATAAAT 100 33
   Spaf_0994 NONE
   Spaf_0993 1006467 .. 1006481 -  -8.6  -4.08945   AGTAGGGCTGTAAAA               GCTGAT GAA ATCAGC               GTAGTAGAGCCCACT  81 128
   Spaf_0987 NONE
       prsA2 NONE
        iscS NONE
   Spaf_0984 NONE
   Spaf_0983  999603 ..  999636 - -11.1  -5.27335   TTGTCTAAAGAAAAA     GCTGATGGCAATGGA GAGT TCCATCAGCATCAGC      TTAGTTTTCAGCTTG 100 26
   Spaf_0982  998789 ..  998802 -  -2.3  -3.47541   CATAAAGAAAAAGTA               GTGAG TATT CTCTC                CCGTCGGAGATTTCT  47 83
   Spaf_0981  997187 ..  997212 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTACCATTTG 100 206
         ldh  991412 ..  991435 -  -7.5  -5.13521   AAAGCAGCTAAAAAA          CATCCCCTT TTTAAT AAGGAGATG           TTTTTTTCTTAGTTT  93 34
   Spaf_0968 NONE
   Spaf_0967  980740 ..  980761 -  -8.7  -4.89838   TTAAGAAACAGAAAA           CAGCATTCC ATTT GGGATGCTG            TTTTTGTGAAAGGAT 100 129
   Spaf_0950  964398 ..  964423 - -11.3  -5.51046   GAAAGACAGAAAAAA         GATCAGC-AGAC GGT GTCTAGCTGATC         ATTTGTAGGGCCTTG 100 2
   Spaf_0948  961685 ..  961724 -  -8.6  -4.78149   TCGACAATCCAAAAA  TAATTGAGAGGCTAGGAC TTTT GTCCCAGCCTCTTTTTTA   CTTATCAAACTTCAC 100 23
   Spaf_0936  952557 ..  952570 -  -3.9   -4.2131   ATCTATTAAAAAATA               TTAAG AGAA CTTAA                TTGAAGAAAAGTCAT  61 266
        trmE  950936 ..  950963 - -15.8  -4.36914   TCCGCTGTGAGAAAA        GTGCTAGAAACA ATCA TGTTTCTAGCAC         TCGGGAGTTTTGAAA 100 140
   Spaf_0931  947578 ..  947598 - -11.9   -5.8187   TATTGAATAAAAAAA            GCGCCTAGA TTT TCTAAGCGC            AAATTAATAATACTG 100 29
   Spaf_0930  946864 ..  946881 -  -5.6  -5.54894   AACGTAGCAAAAAAA             CAGTGA ACATGA TCACTG              TTTTTCTTTTAATGT  88 20
   Spaf_0925  944030 ..  944047 -    -2   -5.5074   GAATTTAATAAAAAA             CTAGAT GAAGAA ATCCAG              CGTATTAAAGATATT  78 87
   Spaf_0918  939007 ..  939028 - -13.1   -5.1244   TGACCAAGATAAAAA           GGCTGAGAA ACCG TTCTCAGCC            TTCGTTCGTGCGAGC 100 20
   Spaf_0917  938309 ..  938332 -  -7.4  -5.55664   TCATGATCAAAAAAA          TCACCCTGTC CTAA GCCAAGGTGA           TTCTGATCTTATTAT 100 37
        rpmE  937905 ..  937925 -    -9  -5.22312   ACGGAGATCAAAAAA            CCACTCCC GAAAG GGAAGTGG            TTCTGTGTTGGTTCT 100 40
   Spaf_0907  929785 ..  929825 -  -9.9  -5.02476   ACATTCCGTAAAAAA  GACAATATCAGTTTTCTGA ATT CCAGAATTCTAATATTGTC  TTTTTTCTTATTTTT 100 132
   Spaf_0895 NONE
   Spaf_0894  919409 ..  919428 -  -7.2  -4.23723   CAAGATCACTGAAAA            TCCTAGAG CCTA CTCTAAGA             TTCTGCGAAATGAAA  73 223
   Spaf_0889 NONE
   Spaf_0888 NONE
   Spaf_0887  914312 ..  914353 - -10.3  -5.66338   AAAGACAACAAAAAA CACCAAAGCGACGAGAT AAGTAACA ATCTCGTCGCTTTTGTT  TAAAAGTTAATGTTG 100 61
   Spaf_0883  910551 ..  910566 -    -9  -4.63184   AAGGGATTGTAAAAA              GCCTTG AGGT CAAGGC               TTTTCTCGTGTACAT  90 198
   Spaf_0857  879836 ..  879859 -   -14  -4.68612   AAAGAAATCACAAAA          TCCCTGAGTT TTTA AACTCAGGGA           TTCTTTTTATTTAGA 100 32
   Spaf_0851  873318 ..  873340 -  -7.1  -4.21471   AGTTTAAAAGAATAA          GGC-TGAAAC AATC GTTTCAAGCC           TTGTTTTTATTTTTA  75 19
   Spaf_0819 NONE
   Spaf_0818  841372 ..  841401 -  -7.3    -4.788   AAATTAATGTAAAAA       TCCTCTGC-AGT TCAATTC ACTAGCAGAGGA       TTTTCTTATTCATTT  83 31
        bioY  835983 ..  836006 - -12.6  -5.18726   TCCCTATAACAAAAA          TCAACATCTG TGTT CAGATGTTGA           TATTTTTAATATATC 100 59
   Spaf_0808 NONE
   Spaf_0807  832034 ..  832059 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          ATCTTTTGTTTTTCA 100 79
   Spaf_0793  817878 ..  817892 -   -10  -5.72207   CTTAAACTAAAAAAA               GCTGGA AAT TCCAGC               TTTTTTATGCTATTT 100 39
   Spaf_0788  811075 ..  811094 - -10.8  -5.31059   ATATCAAGTAAAAAA            GCTAGGAA ATGA TTCCTAGC             TTTAGATTAAAGACA 100 288
   Spaf_0774  796035 ..  796060 -  -8.3  -5.61913   AAGAAAGACAAAAAA         GCCGACCTTCT ACTT AGAAGATCGGA          TCTTTTAATGATTAT 100 37
   Spaf_0772  794487 ..  794513 - -18.2  -4.36914   TCCGCTGTGAGAAAA         GTGCCTGAAACA ATA TGTTTCAGGCAC         TCGGAATTATTGAGC 100 160
        murE NONE
   Spaf_0759 NONE
   Spaf_0758  783666 ..  783679 -  -8.1  -5.19212   ATCAGCATGAAAAAA               GCACC AATC GGTGC                TTTTTTAGTCTTTTA 100 30
        nrdH  752772 ..  752799 - -11.4  -4.93365   CTTTACAAGTAAAAA        GTCTAGTGTTAG GTTG CTAACGCTAGAC         CCTATTTAAGCAAAA 100 52
        nrdA  750512 ..  750525 -  -8.1  -4.91459   GAATACGCACAAAAA               GTCGG CGAA CCGAC                TTTTAATGGCGAACC  95 52
        nrdB  749453 ..  749470 -  -9.9  -5.65177   ATATCTACAAAAAAA             CCTTTCC GTCT GGAAAGG              TTTTTCTTCTTATAG 100 35
        queA NONE
        arcR  735038 ..  735060 - -13.6   -5.1523   GCTACAACATAAAAA           GTTTGGAAAC TTG GTTTCCAAAC           TTTTTATTTACTAAA 100 29
   Spaf_0702  716083 ..  716103 -  -9.8   -5.1764   GATAGAACATAAAAA            GTTGAGAG TTTTT CTCTCAAC            TTTTTTTAATCAAAT 100 31
   Spaf_0701 NONE
   Spaf_0700  714871 ..  714896 - -13.3  -4.54727   TTTTGTAAATGAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 152
   Spaf_0681  696115 ..  696137 -  -2.8   -3.6608   ATCACTGCATTGAAA           TTCATAAAGA ACA TCCTTACAAA           TCAATTTCCAATACA  50 19
   Spaf_0680  695579 ..  695606 -  -5.4  -5.50925   AATGAAGATAAAAAA        GTCGGAGCCGTC ATGT GATGGCTCCGTT         TTTTTTAATGTCTCG  88 152
   Spaf_0664  683881 ..  683893 -  -3.3  -2.53263   GCTAGTGGGAAGGCA                TCTGC TAT GCAGG                GACAACTCCTGACCA  42 341
   Spaf_0657  676965 ..  676987 - -16.4   -4.8622   TTCCTTAATCAAAAA           CACCGAGGAT TTG ATCCTCGGTG           TTTTTATCGTGATTA 100 38
   Spaf_0649  667282 ..  667294 -  -7.7  -5.89921   AGGATAACAAAAAAA                CAGCA AAT TGCTG                TTTTCTGATGAGAAA 100 43
   Spaf_0648  666314 ..  666333 -  -7.9  -5.24416   GAAGCATAAGAAAAA            GCTGAGA CAAAAT TCTCAGC             TTTTTTAGATACTAA  93 30
   Spaf_0633  650689 ..  650714 - -13.3  -2.68952   TCTAAAGACAATTGA         GAGGCCAGGAC TTTT GTCCCAGCCTC          TTTTTTCTACCATTT  88 207
   Spaf_0630  649684 ..  649702 -  -7.4  -6.53504   TATACAAAAAAAAAA             CCGAACCA CTA CAGTTCGG             TTTTTTATCGATTTC 100 43
   Spaf_0624  643269 ..  643294 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGCGTTTTAGT 100 79
   Spaf_0620 NONE
   Spaf_0619  636230 ..  636249 -  -4.9   -5.4433   ATAGACAAAGAAAAA            GCTCTCC TGGAAG GGAGGGC             TTTTGTTGTGACGAT  88 266
        clpE  612765 ..  612790 - -13.3   -5.0666   GAGGGAAAAAAGAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 193
   Spaf_0594 NONE
   Spaf_0593  611858 ..  611877 -  -7.9  -6.01187   AAGGAAATAAAAAAA            GTAAGGC AAATTG GCCTTAC             TTTGTAATTGGAAAG 100 22
        rsuA  595786 ..  595816 - -11.2  -4.70117   AACCTAATAAATAAA       GCTCTAACTGCACA AAG TGTGTGGTTAGAGC       TTTTTTATCTCGTTT  95 30
        comC  594255 ..  594265 -  -6.8  -3.70722   CTCAGTAAGACAGAA                 GGGA TCC TCCC                 AGCCATTGAAAGCTC  65 184
   Spaf_0563  580687 ..  580703 -  -3.1  -3.65046   GGCTCACGTGAATAA              TCAAATA GCA TATTTAA              ACCTCGAGTGGAAGA  52 22
        umuC NONE
   Spaf_0561  578600 ..  578625 -  -7.7  -5.25906   ATAAATCAAGAAAAA         GGATAGCTT CTCAGATC AAGCTATCC          TTTTTCTCTGTCTGA  95 317
        ydjX  569409 ..  569437 - -13.2  -3.81557   TTGGTGAAATAAACA        CAGAAACACGGC GGAAT GCCGTGTTTCAG        ACTGAAGAAAAAGTC 100 266
        recX NONE
   Spaf_0535  559115 ..  559126 -  -5.8  -5.58179   GATTACAAGAAAAAA                GAGC TTTC GCTC                 TTTCCAACTTTATTT  91 35
   Spaf_0534  551440 ..  551459 - -10.8  -4.38447   AGACAAGAATATAAA            TAGAGAGG CTTT CCTCTCTA             TTTTCTTTATGCCTT  95 291
       dacC2  543462 ..  543487 - -10.6  -4.90266   TTCATCAATCAAAAA         TCACAATGGA TTTGAC TCCATTGTGA          TTTTTTGCTTATAAT 100 34
   Spaf_0516 NONE
   Spaf_0515  530764 ..  530793 - -10.9  -5.25803   AAGCGGTACAAAAAA       CAGCTTGCTT-CCA TAC TGGTAAGCAAACTG       TTTCAAGAGATTAAT 100 36
   Spaf_0454  473835 ..  473882 - -23.8  -5.49568   AATGGAAAATAAAAA CCCACCCTATCTTCCACAGTCA AACA TGACTGTAGAAAATAGAGTGGG TCTAGGATGTTAAAG 100 42
   Spaf_0441  461226 ..  461249 -  -9.6  -5.04385   TACATGTGTAAAAAA          GAGGGTGGAT AAAA ATCCAGCCTC           TTGAAATGACATTTG 100 87
   Spaf_0440  457869 ..  457892 - -15.4  -4.60041   ATTTATCTCCAAAAA          GAACCTTCGC GTCT GCGAAGGTTC           TTTTCATGTCATCCA 100 57
   Spaf_0426 NONE
   Spaf_0424  438748 ..  438780 - -12.1  -4.48902   ATATATCCAAAGAAA     GAGCCCTGC-CCTC TTAAAT GAGGAGCAAGGCTC      TTTTGTCTTCAATAA 100 101
   Spaf_0414 NONE
   Spaf_0413  429956 ..  429989 - -19.9  -5.40474   AGTTTCGTAAAAAAA     GTAAGGTAGTAGTGA TGAT TCACTACTACCTTAC      TTTTTGTCATTTACG 100 41
   Spaf_0374  386339 ..  386369 - -14.1  -5.76633   TTATATAGAAAAAAA       CATCCTCGTTAGG TTTTT CCTAGCGAGGATG       TTTGCTTTATTTGTC 100 32
   Spaf_0365  377151 ..  377178 -   -12  -4.72272   CTCTTTCATCAAAAA        GCTTCGGTAGGA AGAA CCCTACCGAGGC         TTTTTAATAAATTTC 100 82
        dacC  369816 ..  369841 - -13.3  -3.65696   ATGTAGACAAACCAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTGTTTTTGGA 100 180
        pflA  360584 ..  360626 - -17.3  -5.31158   GAAAAAAACTAAAAA TCCCCACAGCCATGTTTCAA CCTA CTGAAAC-TAGCTGTGGGGA TTTTTGAGTGGATTA 100 38
        fimC NONE
        fimB NONE
        fimA NONE
         tpx  355231 ..  355245 -   -10  -4.64844   TGTAGATATAGAAAA               GAGGTC GCA GACCTC               TTTTTTCGTTTATCC  91 35
        scaR  353043 ..  353068 -  -7.6  -4.36596   TCCATAAGTAAGAAA         GCATGCAGTC GAATTA GACTGCATGT          TTTTCGATATAAAGT  82 13
   Spaf_0330  340601 ..  340617 -    -8   -5.3671   AAGACAAGCAAAAAA              GCCTTG GTTAT CAAGGC              TTTTACTGTTGAAGT  95 382
   Spaf_0325  337218 ..  337271 - -16.5  -4.19472   TAAGAGAGTTGAAAA TGTACTGCACCCCAAAAGTTAGAC AGAAAAA ATCTAACTTTTGGGAT-CAGTACA TATCCTCGCTTTTTT 100 40
   Spaf_0324  335900 ..  335925 - -12.7  -5.10064   TTGAAGATACAAAAA         GACAAACGCCA AAAA TGACGTTTGTC          TACGTTCTGAGGTAG 100 61
   Spaf_0323 NONE
   Spaf_0322  333319 ..  333344 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTGTGCATAATG 100 256
   Spaf_0319  331571 ..  331585 -  -8.6  -4.08945   AGTAGGGCTGTAAAA               GCTGAT GAA ATCAGC               GTAGTAGAGCCCACT  81 21
        pepA  315757 ..  315770 -  -9.5  -5.00616   TTTCCCTCTAAAAAA               GCCCC TTAC GGGGC                TTCAGATCGATGCTA 100 42
   Spaf_0299  313749 ..  313769 -  -9.8    -5.626   TACTTCATAAAAAAA            CAATCCCT GCTCG AGGGATTG            TTCAAATTGAAGACA 100 314
   Spaf_0275  285933 ..  285959 - -12.4  -4.78839   AAGTGTATAAGAAAA         CCACGAAGTTCA TAC CAAACTTCGTGG         TTTTACTTTCTTAAT 100 36
        rrmA  281804 ..  281838 - -15.2  -2.81045   GCATGCAGAAGATGA     GTAAAAGGCTGAGACA AAT CGTCTCAGCCTTTTAA     TTGAAGACAAAGTCT 100 327
   Spaf_0255  263715 ..  263740 - -13.3  -5.28826   AAATGGTAGAAAAAA         GAGGCTGGGAC AAAA GTCCTAGCCTC          TCAATTATTTTTGGA 100 181
   Spaf_0246 NONE
   Spaf_0245 NONE
   Spaf_0244  253786 ..  253803 -  -8.4  -3.46202   AAATAGATTAAGTAA             GGGGAG GATTAA CTCCCC              TTGTATTTTACTTAT  70 37
   Spaf_0243 NONE
   Spaf_0242  252360 ..  252381 -  -8.8  -5.21709   CGGTATAGTAAAAAA           GACAAGGT TTTCGG ACCTTGTC            TTTTTTTCTCTGTTG 100 68
   Spaf_0238  242763 ..  242778 -  -7.6  -6.22802   TGTGATAAAAAAAAA              CTATCG TTGC CGATAG               TATTTTTGATTAATT 100 35
        cysK  241696 ..  241724 - -13.3  -6.07374   AGAAAAAATAAAAAA        CTTCGATAGGTTT ATA AACCCTATCGAAG        TTTTTTATATAAAGA 100 42
        luxS  224174 ..  224199 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTCTGAGTATTAA 100 37
        recU NONE
       pbp1A  217211 ..  217239 -  -3.2  -6.28401   TAAAAAACAAAAAAA       GTTCACAG-GAGA TGGT CCTTGCTGTGAAC        TAGAATATATTATTC 100 35
   Spaf_0199  201951 ..  201985 - -18.9  -5.67711   GAAACAAAAGAAAAA     CAGAGATGGAAGAAA TTACT TTTCTTCCATCTCTG     TTTTTTGTCCTTGAA 100 6
   Spaf_0179 NONE
   Spaf_0178  177747 ..  177766 - -10.8  -5.97979   AGAATAAGAAAAAAA            CGATTGAG TCTT CTCAATCG             TTTTTACCTGGTTGC 100 118
   Spaf_0172  172920 ..  172942 -  -7.8  -4.85599   TTTAGGGGACAAAAA           GACATGAG GACGTAA CTCATGTC           TGTTAGTATTATAAG  88 34
        adhA  171701 ..  171722 - -14.5  -5.11613   AGAGCACTCAAAAAA           GACTAGCCC AGTT GGGCTAGTC            CTGTAGGTTCAGTTG 100 42
        manL NONE
        manM NONE
        manN  168574 ..  168601 - -10.8    -3.484   TCCATTATATCATAA        TAAAAAGAAGGC CGAA ACCTTCTTTTTA         GTTGATCTTTGCTTA  84 38
        manO  168164 ..  168180 -  -4.5  -3.01191   TATACAAGAAAAGAT              CCTATTT TGC AAATAGA              TTTTTAATTTTAGCC  50 10
        serS  166632 ..  166657 - -11.3  -5.32699   GTAAATATTAAAAAA         CTGAG-CTTGCA ATT TGCAAGACTCAG         TTTTTTTAAGCTTTA 100 38
        lysC  154289 ..  154327 -  -8.5  -6.06723   TCTGGTAAAAAAAAA  GATTGAAGAAAGTAATCA AAAT TGATTT-TTTCTTCAATC   CGAAGTATCTGTTAA 100 64
   Spaf_0149 NONE
   Spaf_0148  152659 ..  152681 -  -6.3    -3.727   CGGAGTATATTCAAA           GAGGTCAAT TATGT ACTGACCCC           AAAAAGTTAGACCAT  63 45
   Spaf_0116  128789 ..  128817 -   -14  -3.49653   AGTAGGGCTATAGAA        GAAAACCCCAGC AGGAA ACTGGGGTTTTC        TTCTTACTCTTATTC 100 35
   Spaf_0098  110333 ..  110370 -  -9.4  -5.38321   AAACATCATAAAAAA  CGAGGAACA--AACTCTG ATGG CAGAGCTGGTGTTCCTCG   TTTATTTATTATGGA 100 102
   Spaf_0095  106971 ..  106996 - -15.5  -2.79912   TCCAAAAATAATTGA         GAGGCTAGGAC TTTT GTCCCAGCCTC          TTTTTCTACCATTTG 100 206
   Spaf_0093 NONE
   Spaf_0092  103646 ..  103674 -  -8.1   -5.4477   AAATTGTTAAAAAAA        TCTCCCGCCCCAT CAA ATGGAACAGGAGT        TCTCCTTAAAGGTCT 100 31
        rpmF NONE
        rpmG  103141 ..  103166 - -10.6  -5.93252   TGCAAAAAGAAAAAA         GCCTTTGAAA TCAATG TTTCAAAGGC          TTTTTCCTACTTAAT 100 40
   Spaf_0085   94028 ..   94045 -  -8.4  -5.07275   GTACATAGAGAAAAA             GCCACC GGTTTT GGTGGC              TCTTATAGGGAGATT 100 180
   Spaf_0084   92665 ..   92688 - -13.2  -5.28176   TGTATGCACAAAAAA          GGCCGGAAGA CGAA TCTTCCAGCC           AGACGATGGTTATAA 100 35
   Spaf_0072   80518 ..   80551 - -11.9  -5.53991   GATTCATCAAAAAAA     GCATGAAAGATGAAG AAAA CCTGATCTTTCATGC      TTTTTAAATAGGGAG 100 47
        gntR   53963 ..   53993 - -16.4  -3.28924   TATGCGGTGTGATAA       GATCGAAAAAGTTC GGG GAACCTTTTCGATC       TTTTTTAATTCCTCG 100 187
   Spaf_0035   44721 ..   44744 -  -8.9  -4.91873   GACATTAATCAAAAA          GGCACTCAT TCAACG ATGAGCGCC           TTTTCTGCTGGTTAT 100 48
   Spaf_0019   26531 ..   26556 -  -4.7  -2.74982   AACTAAGAATAACAT         TGAAGTAGAAC ATTA GTTCTGCTTCT          TTTTCTACCATTTGT  49 205
   Spaf_0003    3083 ..    3108 - -17.7  -3.81287   GAGAGTATTATGAAA         GGTTCGGTCAC TTAT GTGACCGAACC          TTTTCGATTATTTTA 100 33
