M28_Spy0012	PWY-6599	guanine and guanosine salvage II
M28_Spy0012	PWY-6609	adenine and adenosine salvage III
M28_Spy0012	PWY-6610	adenine and adenosine salvage IV
M28_Spy0012	PWY-6620	guanine and guanosine salvage
M28_Spy0022	PWY-6123	inosine-5'-phosphate biosynthesis I
M28_Spy0022	PWY-6124	inosine-5'-phosphate biosynthesis II
M28_Spy0022	PWY-7234	inosine-5'-phosphate biosynthesis III
M28_Spy0024	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
M28_Spy0024	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
M28_Spy0024	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
M28_Spy0024	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
M28_Spy0025	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
M28_Spy0025	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
M28_Spy0025	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
M28_Spy0026	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
M28_Spy0026	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
M28_Spy0027	PWY-6123	inosine-5'-phosphate biosynthesis I
M28_Spy0027	PWY-6124	inosine-5'-phosphate biosynthesis II
M28_Spy0027	PWY-7234	inosine-5'-phosphate biosynthesis III
M28_Spy0029	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
M28_Spy0029	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
M28_Spy0029	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
M28_Spy0033	PWY-6123	inosine-5'-phosphate biosynthesis I
M28_Spy0033	PWY-6124	inosine-5'-phosphate biosynthesis II
M28_Spy0033	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0033	PWY-7234	inosine-5'-phosphate biosynthesis III
M28_Spy0039	PWY-3162	L-tryptophan degradation V (side chain pathway)
M28_Spy0039	PWY-5057	L-valine degradation II
M28_Spy0039	PWY-5076	L-leucine degradation III
M28_Spy0039	PWY-5078	L-isoleucine degradation II
M28_Spy0039	PWY-5079	L-phenylalanine degradation III
M28_Spy0039	PWY-5082	L-methionine degradation III
M28_Spy0039	PWY-5162	2-oxopentenoate degradation
M28_Spy0039	PWY-5436	L-threonine degradation IV
M28_Spy0039	PWY-5480	pyruvate fermentation to ethanol I
M28_Spy0039	PWY-5486	pyruvate fermentation to ethanol II
M28_Spy0039	PWY-5751	phenylethanol biosynthesis
M28_Spy0039	PWY-6028	acetoin degradation
M28_Spy0039	PWY-6313	serotonin degradation
M28_Spy0039	PWY-6333	acetaldehyde biosynthesis I
M28_Spy0039	PWY-6342	noradrenaline and adrenaline degradation
M28_Spy0039	PWY-6587	pyruvate fermentation to ethanol III
M28_Spy0039	PWY-6802	salidroside biosynthesis
M28_Spy0039	PWY-6871	3-methylbutanol biosynthesis
M28_Spy0039	PWY-7013	L-1,2-propanediol degradation
M28_Spy0039	PWY-7085	triethylamine degradation
M28_Spy0039	PWY-7111	pyruvate fermentation to isobutanol (engineered)
M28_Spy0039	PWY-7118	chitin degradation to ethanol
M28_Spy0039	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
M28_Spy0039	PWY-7396	butanol and isobutanol biosynthesis (engineered)
M28_Spy0039	PWY-7557	dehydrodiconiferyl alcohol degradation
M28_Spy0064	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0073	PWY-7560	methylerythritol phosphate pathway II
M28_Spy0092	PWY-5482	pyruvate fermentation to acetate II
M28_Spy0092	PWY-5485	pyruvate fermentation to acetate IV
M28_Spy0092	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy0094	PWY-3341	L-proline biosynthesis III
M28_Spy0094	PWY-4981	L-proline biosynthesis II (from arginine)
M28_Spy0094	PWY-6344	L-ornithine degradation II (Stickland reaction)
M28_Spy0122	PWY-7310	D-glucosaminate degradation
M28_Spy0129	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0130	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0134	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0147	PWY-7310	D-glucosaminate degradation
M28_Spy0149	PWY-5686	UMP biosynthesis
M28_Spy0150	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
M28_Spy0153	PWY-7310	D-glucosaminate degradation
M28_Spy0168	PWY-5316	nicotine biosynthesis
M28_Spy0168	PWY-5381	pyridine nucleotide cycling (plants)
M28_Spy0168	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
M28_Spy0168	PWY-7342	superpathway of nicotine biosynthesis
M28_Spy0173	PWY-6700	queuosine biosynthesis
M28_Spy0183	PWY-3801	sucrose degradation II (sucrose synthase)
M28_Spy0183	PWY-5054	sorbitol biosynthesis I
M28_Spy0183	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
M28_Spy0183	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
M28_Spy0183	PWY-5659	GDP-mannose biosynthesis
M28_Spy0183	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0183	PWY-621	sucrose degradation III (sucrose invertase)
M28_Spy0183	PWY-622	starch biosynthesis
M28_Spy0183	PWY-6531	mannitol cycle
M28_Spy0183	PWY-6981	chitin biosynthesis
M28_Spy0183	PWY-7238	sucrose biosynthesis II
M28_Spy0183	PWY-7347	sucrose biosynthesis III
M28_Spy0183	PWY-7385	1,3-propanediol biosynthesis (engineered)
M28_Spy0187	PWY-3801	sucrose degradation II (sucrose synthase)
M28_Spy0187	PWY-6527	stachyose degradation
M28_Spy0187	PWY-6981	chitin biosynthesis
M28_Spy0187	PWY-7238	sucrose biosynthesis II
M28_Spy0187	PWY-7343	UDP-glucose biosynthesis
M28_Spy0188	PWY-5667	CDP-diacylglycerol biosynthesis I
M28_Spy0188	PWY-5981	CDP-diacylglycerol biosynthesis III
M28_Spy0195	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
M28_Spy0195	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0195	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
M28_Spy0195	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
M28_Spy0197	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
M28_Spy0218	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy0218	PWY-5723	Rubisco shunt
M28_Spy0219	PWY-6898	thiamin salvage III
M28_Spy0219	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
M28_Spy0219	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
M28_Spy0227	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy0227	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy0227	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy0227	PWY-7003	glycerol degradation to butanol
M28_Spy0235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
M28_Spy0235	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
M28_Spy0235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
M28_Spy0239	PWY-6823	molybdenum cofactor biosynthesis
M28_Spy0239	PWY-6891	thiazole biosynthesis II (Bacillus)
M28_Spy0239	PWY-6892	thiazole biosynthesis I (E. coli)
M28_Spy0239	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
M28_Spy0243	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
M28_Spy0243	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
M28_Spy0255	PWY-5381	pyridine nucleotide cycling (plants)
M28_Spy0255	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
M28_Spy0282	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy0282	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy0292	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy0292	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy0293	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
M28_Spy0316	PWY-7183	pyrimidine nucleobases salvage I
M28_Spy0319	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy0319	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0319	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0319	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
M28_Spy0319	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy0319	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy0334	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy0334	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0334	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy0334	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy0334	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0334	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0334	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0334	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
M28_Spy0336	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy0336	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0336	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy0336	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy0336	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0336	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0336	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0336	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
M28_Spy0351	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
M28_Spy0354	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
M28_Spy0354	PWY-6153	autoinducer AI-2 biosynthesis I
M28_Spy0354	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
M28_Spy0375	PWY-7039	phosphatidate metabolism, as a signaling molecule
M28_Spy0429	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy0431	PWY-5199	factor 420 polyglutamylation
M28_Spy0433	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
M28_Spy0433	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
M28_Spy0437	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
M28_Spy0456	PWY-7310	D-glucosaminate degradation
M28_Spy0484	PWY-1622	formaldehyde assimilation I (serine pathway)
M28_Spy0484	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
M28_Spy0484	PWY-5913	TCA cycle VI (obligate autotrophs)
M28_Spy0484	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0484	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
M28_Spy0484	PWY-6549	L-glutamine biosynthesis III
M28_Spy0484	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
M28_Spy0484	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
M28_Spy0484	PWY-7124	ethylene biosynthesis V (engineered)
M28_Spy0488	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy0488	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy0488	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0488	PWY-7003	glycerol degradation to butanol
M28_Spy0497	PWY-6986	alginate degradation
M28_Spy0500	PWY-7310	D-glucosaminate degradation
M28_Spy0506	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
M28_Spy0506	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
M28_Spy0506	PWY-7242	D-fructuronate degradation
M28_Spy0506	PWY-7310	D-glucosaminate degradation
M28_Spy0513	PWY-6389	(<i>S</i>)-acetoin biosynthesis
M28_Spy0527	PWY-3461	L-tyrosine biosynthesis II
M28_Spy0527	PWY-3462	L-phenylalanine biosynthesis II
M28_Spy0527	PWY-6120	L-tyrosine biosynthesis III
M28_Spy0527	PWY-6627	salinosporamide A biosynthesis
M28_Spy0535	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy0535	PWY-1622	formaldehyde assimilation I (serine pathway)
M28_Spy0535	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
M28_Spy0535	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy0535	PWY-5723	Rubisco shunt
M28_Spy0535	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0535	PWY-6886	1-butanol autotrophic biosynthesis
M28_Spy0535	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy0535	PWY-7003	glycerol degradation to butanol
M28_Spy0535	PWY-7124	ethylene biosynthesis V (engineered)
M28_Spy0535	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
M28_Spy0552	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
M28_Spy0552	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
M28_Spy0552	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
M28_Spy0557	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0559	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0562	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy0562	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy0597	PWY-7205	CMP phosphorylation
M28_Spy0603	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy0603	PWY-6416	quinate degradation II
M28_Spy0603	PWY-6707	gallate biosynthesis
M28_Spy0604	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy0607	PWY-4081	glutathione redox reactions I
M28_Spy0608	PWY-2161	folate polyglutamylation
M28_Spy0610	PWY-6823	molybdenum cofactor biosynthesis
M28_Spy0610	PWY-6891	thiazole biosynthesis II (Bacillus)
M28_Spy0610	PWY-6892	thiazole biosynthesis I (E. coli)
M28_Spy0610	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
M28_Spy0619	PWY-7183	pyrimidine nucleobases salvage I
M28_Spy0621	PWY-5686	UMP biosynthesis
M28_Spy0622	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
M28_Spy0622	PWY-5686	UMP biosynthesis
M28_Spy0622	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
M28_Spy0624	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
M28_Spy0624	PWY-5686	UMP biosynthesis
M28_Spy0624	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
M28_Spy0633	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
M28_Spy0633	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
M28_Spy0637	PWY-6829	tRNA methylation (yeast)
M28_Spy0637	PWY-7285	methylwyosine biosynthesis
M28_Spy0637	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
M28_Spy0638	PWY-101	photosynthesis light reactions
M28_Spy0638	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
M28_Spy0639	PWY-7310	D-glucosaminate degradation
M28_Spy0640	PWY-6654	phosphopantothenate biosynthesis III
M28_Spy0642	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
M28_Spy0642	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
M28_Spy0643	PWY-7310	D-glucosaminate degradation
M28_Spy0650	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy0650	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
M28_Spy0650	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0650	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0650	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
M28_Spy0650	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy0650	PWY-7205	CMP phosphorylation
M28_Spy0650	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy0650	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0650	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0650	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0650	PWY-7224	purine deoxyribonucleosides salvage
M28_Spy0650	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0650	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
M28_Spy0662	PWY-3821	galactose degradation III
M28_Spy0662	PWY-6174	mevalonate pathway II (archaea)
M28_Spy0662	PWY-6317	galactose degradation I (Leloir pathway)
M28_Spy0662	PWY-6527	stachyose degradation
M28_Spy0662	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0662	PWY-922	mevalonate pathway I
M28_Spy0663	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0663	PWY-922	mevalonate pathway I
M28_Spy0664	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0664	PWY-922	mevalonate pathway I
M28_Spy0665	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
M28_Spy0665	PWY-6174	mevalonate pathway II (archaea)
M28_Spy0665	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
M28_Spy0665	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
M28_Spy0665	PWY-7102	bisabolene biosynthesis
M28_Spy0665	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0665	PWY-7524	mevalonate pathway III (archaea)
M28_Spy0665	PWY-7560	methylerythritol phosphate pathway II
M28_Spy0665	PWY-922	mevalonate pathway I
M28_Spy0666	PWY-6174	mevalonate pathway II (archaea)
M28_Spy0666	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0666	PWY-7524	mevalonate pathway III (archaea)
M28_Spy0666	PWY-922	mevalonate pathway I
M28_Spy0667	PWY-6174	mevalonate pathway II (archaea)
M28_Spy0667	PWY-7391	isoprene biosynthesis II (engineered)
M28_Spy0667	PWY-7524	mevalonate pathway III (archaea)
M28_Spy0667	PWY-922	mevalonate pathway I
M28_Spy0668	PWY-3841	folate transformations II
M28_Spy0668	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy0668	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy0668	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy0668	PWY-7199	pyrimidine deoxyribonucleosides salvage
M28_Spy0668	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy0669	PWY-3841	folate transformations II
M28_Spy0669	PWY-6614	tetrahydrofolate biosynthesis
M28_Spy0675	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy0675	PWY-5723	Rubisco shunt
M28_Spy0676	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
M28_Spy0677	PWY-4202	arsenate detoxification I (glutaredoxin)
M28_Spy0677	PWY-4621	arsenate detoxification II (glutaredoxin)
M28_Spy0678	PWY-4202	arsenate detoxification I (glutaredoxin)
M28_Spy0678	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
M28_Spy0678	PWY-6608	guanosine nucleotides degradation III
M28_Spy0678	PWY-6609	adenine and adenosine salvage III
M28_Spy0678	PWY-6611	adenine and adenosine salvage V
M28_Spy0678	PWY-6620	guanine and guanosine salvage
M28_Spy0678	PWY-6627	salinosporamide A biosynthesis
M28_Spy0678	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
M28_Spy0678	PWY-7179	purine deoxyribonucleosides degradation I
M28_Spy0678	PWY-7179-1	purine deoxyribonucleosides degradation
M28_Spy0679	PWY-4202	arsenate detoxification I (glutaredoxin)
M28_Spy0679	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
M28_Spy0679	PWY-6608	guanosine nucleotides degradation III
M28_Spy0679	PWY-6609	adenine and adenosine salvage III
M28_Spy0679	PWY-6611	adenine and adenosine salvage V
M28_Spy0679	PWY-6620	guanine and guanosine salvage
M28_Spy0679	PWY-6627	salinosporamide A biosynthesis
M28_Spy0679	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
M28_Spy0679	PWY-7179	purine deoxyribonucleosides degradation I
M28_Spy0679	PWY-7179-1	purine deoxyribonucleosides degradation
M28_Spy0683	PWY-5686	UMP biosynthesis
M28_Spy0684	PWY-5686	UMP biosynthesis
M28_Spy0685	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
M28_Spy0689	PWY-5686	UMP biosynthesis
M28_Spy0693	PWY-5057	L-valine degradation II
M28_Spy0693	PWY-5076	L-leucine degradation III
M28_Spy0693	PWY-5078	L-isoleucine degradation II
M28_Spy0693	PWY-5101	L-isoleucine biosynthesis II
M28_Spy0693	PWY-5103	L-isoleucine biosynthesis III
M28_Spy0693	PWY-5104	L-isoleucine biosynthesis IV
M28_Spy0693	PWY-5108	L-isoleucine biosynthesis V
M28_Spy0702	PWY-2781	<i>cis</i>-zeatin biosynthesis
M28_Spy0708	PWY-6605	adenine and adenosine salvage II
M28_Spy0708	PWY-6610	adenine and adenosine salvage IV
M28_Spy0712	PWY-5663	tetrahydrobiopterin biosynthesis I
M28_Spy0712	PWY-5664	tetrahydrobiopterin biosynthesis II
M28_Spy0712	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
M28_Spy0712	PWY-6703	preQ<sub>0</sub> biosynthesis
M28_Spy0712	PWY-6983	tetrahydrobiopterin biosynthesis III
M28_Spy0712	PWY-7442	drosopterin and aurodrosopterin biosynthesis
M28_Spy0714	PWY-3221	dTDP-L-rhamnose biosynthesis II
M28_Spy0714	PWY-6808	dTDP-D-forosamine biosynthesis
M28_Spy0714	PWY-6942	dTDP-D-desosamine biosynthesis
M28_Spy0714	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
M28_Spy0714	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
M28_Spy0714	PWY-6974	dTDP-L-olivose biosynthesis
M28_Spy0714	PWY-6976	dTDP-L-mycarose biosynthesis
M28_Spy0714	PWY-7104	dTDP-L-megosamine biosynthesis
M28_Spy0714	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
M28_Spy0714	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
M28_Spy0714	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
M28_Spy0714	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
M28_Spy0714	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
M28_Spy0714	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
M28_Spy0714	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
M28_Spy0714	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
M28_Spy0716	PWY-3221	dTDP-L-rhamnose biosynthesis II
M28_Spy0716	PWY-6808	dTDP-D-forosamine biosynthesis
M28_Spy0716	PWY-6942	dTDP-D-desosamine biosynthesis
M28_Spy0716	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
M28_Spy0716	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
M28_Spy0716	PWY-6974	dTDP-L-olivose biosynthesis
M28_Spy0716	PWY-6976	dTDP-L-mycarose biosynthesis
M28_Spy0716	PWY-7104	dTDP-L-megosamine biosynthesis
M28_Spy0716	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
M28_Spy0716	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
M28_Spy0716	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
M28_Spy0716	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
M28_Spy0716	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
M28_Spy0716	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
M28_Spy0716	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
M28_Spy0716	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
M28_Spy0717	PWY-6502	oxidized GTP and dGTP detoxification
M28_Spy0734	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
M28_Spy0734	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
M28_Spy0737	PWY-6984	lipoate salvage II
M28_Spy0737	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
M28_Spy0737	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
M28_Spy0742	PWY-6749	CMP-legionaminate biosynthesis I
M28_Spy0758	PWY-7310	D-glucosaminate degradation
M28_Spy0794	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
M28_Spy0794	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
M28_Spy0797	PWY-2161	folate polyglutamylation
M28_Spy0798	PWY-5663	tetrahydrobiopterin biosynthesis I
M28_Spy0798	PWY-5664	tetrahydrobiopterin biosynthesis II
M28_Spy0798	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
M28_Spy0798	PWY-6703	preQ<sub>0</sub> biosynthesis
M28_Spy0798	PWY-6983	tetrahydrobiopterin biosynthesis III
M28_Spy0798	PWY-7442	drosopterin and aurodrosopterin biosynthesis
M28_Spy0799	PWY-6614	tetrahydrofolate biosynthesis
M28_Spy0800	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
M28_Spy0800	PWY-6148	tetrahydromethanopterin biosynthesis
M28_Spy0800	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
M28_Spy0800	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
M28_Spy0801	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
M28_Spy0801	PWY-6148	tetrahydromethanopterin biosynthesis
M28_Spy0801	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
M28_Spy0801	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
M28_Spy0802	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy0802	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy0812	PWY-6348	phosphate acquisition
M28_Spy0812	PWY-6357	phosphate utilization in cell wall regeneration
M28_Spy0812	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
M28_Spy0812	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
M28_Spy0820	PWY-6823	molybdenum cofactor biosynthesis
M28_Spy0820	PWY-6891	thiazole biosynthesis II (Bacillus)
M28_Spy0820	PWY-6892	thiazole biosynthesis I (E. coli)
M28_Spy0820	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
M28_Spy0824	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
M28_Spy0824	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
M28_Spy0824	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
M28_Spy0826	PWY-1281	sulfoacetaldehyde degradation I
M28_Spy0826	PWY-5482	pyruvate fermentation to acetate II
M28_Spy0826	PWY-5485	pyruvate fermentation to acetate IV
M28_Spy0826	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy0826	PWY-6637	sulfolactate degradation II
M28_Spy0836	PWY-7199	pyrimidine deoxyribonucleosides salvage
M28_Spy0841	PWY-1622	formaldehyde assimilation I (serine pathway)
M28_Spy0841	PWY-181	photorespiration
M28_Spy0841	PWY-2161	folate polyglutamylation
M28_Spy0841	PWY-2201	folate transformations I
M28_Spy0841	PWY-3661	glycine betaine degradation I
M28_Spy0841	PWY-3661-1	glycine betaine degradation II (mammalian)
M28_Spy0841	PWY-3841	folate transformations II
M28_Spy0841	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy0847	PWY-5481	pyruvate fermentation to lactate
M28_Spy0847	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy0850	PWY-5386	methylglyoxal degradation I
M28_Spy0853	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
M28_Spy0853	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
M28_Spy0853	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
M28_Spy0862	PWY-7310	D-glucosaminate degradation
M28_Spy0870	PWY-6339	syringate degradation
M28_Spy0871	PWY-5796	malonate decarboxylase activation
M28_Spy0876	PWY-6339	syringate degradation
M28_Spy0877	PWY-6339	syringate degradation
M28_Spy0879	PWY-5392	reductive TCA cycle II
M28_Spy0879	PWY-6038	citrate degradation
M28_Spy0880	PWY-6038	citrate degradation
M28_Spy0891	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy0895	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
M28_Spy0895	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
M28_Spy0899	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
M28_Spy0899	PWY-2161	folate polyglutamylation
M28_Spy0899	PWY-2201	folate transformations I
M28_Spy0899	PWY-3841	folate transformations II
M28_Spy0900	PWY-6984	lipoate salvage II
M28_Spy0900	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
M28_Spy0900	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
M28_Spy0906	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
M28_Spy0906	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
M28_Spy0910	PWY-6749	CMP-legionaminate biosynthesis I
M28_Spy0915	PWY-6556	pyrimidine ribonucleosides salvage II
M28_Spy0915	PWY-7181	pyrimidine deoxyribonucleosides degradation
M28_Spy0915	PWY-7193	pyrimidine ribonucleosides salvage I
M28_Spy0915	PWY-7199	pyrimidine deoxyribonucleosides salvage
M28_Spy0917	PWY-3961	phosphopantothenate biosynthesis II
M28_Spy0933	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
M28_Spy0933	PWY-6167	flavin biosynthesis II (archaea)
M28_Spy0933	PWY-6168	flavin biosynthesis III (fungi)
M28_Spy0958	PWY-6749	CMP-legionaminate biosynthesis I
M28_Spy0960	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy0960	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
M28_Spy0960	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy0960	PWY-5723	Rubisco shunt
M28_Spy0960	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy0960	PWY-6886	1-butanol autotrophic biosynthesis
M28_Spy0960	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy0960	PWY-7003	glycerol degradation to butanol
M28_Spy0960	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
M28_Spy0960	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
M28_Spy0961	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy0961	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy0961	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy0961	PWY-7385	1,3-propanediol biosynthesis (engineered)
M28_Spy1036	PWY-5941	glycogen degradation II (eukaryotic)
M28_Spy1036	PWY-622	starch biosynthesis
M28_Spy1036	PWY-6731	starch degradation III
M28_Spy1036	PWY-6737	starch degradation V
M28_Spy1036	PWY-7238	sucrose biosynthesis II
M28_Spy1037	PWY-5941	glycogen degradation II (eukaryotic)
M28_Spy1037	PWY-6724	starch degradation II
M28_Spy1037	PWY-6737	starch degradation V
M28_Spy1037	PWY-7238	sucrose biosynthesis II
M28_Spy1046	PWY-842	starch degradation I
M28_Spy1060	PWY-7310	D-glucosaminate degradation
M28_Spy1063	PWY-7310	D-glucosaminate degradation
M28_Spy1064	PWY-7310	D-glucosaminate degradation
M28_Spy1092	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy1093	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy1096	PWY-1281	sulfoacetaldehyde degradation I
M28_Spy1096	PWY-5482	pyruvate fermentation to acetate II
M28_Spy1096	PWY-5485	pyruvate fermentation to acetate IV
M28_Spy1096	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy1096	PWY-6637	sulfolactate degradation II
M28_Spy1099	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy1099	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy1100	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
M28_Spy1100	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
M28_Spy1102	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
M28_Spy1102	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
M28_Spy1109	PWY-7193	pyrimidine ribonucleosides salvage I
M28_Spy1116	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy1116	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy1116	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy1116	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy1116	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1116	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1116	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy1116	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
M28_Spy1118	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
M28_Spy1118	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy1118	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
M28_Spy1118	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy1118	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1118	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1118	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
M28_Spy1118	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
M28_Spy1133	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
M28_Spy1133	PWY-6855	chitin degradation I (archaea)
M28_Spy1133	PWY-6906	chitin derivatives degradation
M28_Spy1134	PWY-6700	queuosine biosynthesis
M28_Spy1139	PWY-6854	ethylene biosynthesis III (microbes)
M28_Spy1151	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy1151	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy1152	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy1152	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy1158	PWY-1622	formaldehyde assimilation I (serine pathway)
M28_Spy1158	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy1173	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
M28_Spy1173	PWY-2201	folate transformations I
M28_Spy1173	PWY-3841	folate transformations II
M28_Spy1173	PWY-5030	L-histidine degradation III
M28_Spy1173	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy1173	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
M28_Spy1174	PWY-6749	CMP-legionaminate biosynthesis I
M28_Spy1187	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
M28_Spy1191	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
M28_Spy1191	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
M28_Spy1191	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
M28_Spy1191	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
M28_Spy1192	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
M28_Spy1192	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
M28_Spy1196	PWY-2723	trehalose degradation V
M28_Spy1196	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
M28_Spy1196	PWY-5661	GDP-glucose biosynthesis
M28_Spy1196	PWY-7238	sucrose biosynthesis II
M28_Spy1196	PWY-7385	1,3-propanediol biosynthesis (engineered)
M28_Spy1211	PWY-4981	L-proline biosynthesis II (from arginine)
M28_Spy1211	PWY-4984	urea cycle
M28_Spy1211	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
M28_Spy1213	PWY-4981	L-proline biosynthesis II (from arginine)
M28_Spy1222	PWY-6803	phosphatidylcholine acyl editing
M28_Spy1222	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
M28_Spy1222	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
M28_Spy1222	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
M28_Spy1338	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
M28_Spy1338	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
M28_Spy1338	PWY-6164	3-dehydroquinate biosynthesis I
M28_Spy1339	PWY-6164	3-dehydroquinate biosynthesis I
M28_Spy1344	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
M28_Spy1345	PWY-6807	xyloglucan degradation II (exoglucanase)
M28_Spy1355	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
M28_Spy1370	PWY-6936	seleno-amino acid biosynthesis
M28_Spy1382	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
M28_Spy1390	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
M28_Spy1390	PWY-6153	autoinducer AI-2 biosynthesis I
M28_Spy1390	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
M28_Spy1399	PWY-5381	pyridine nucleotide cycling (plants)
M28_Spy1407	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
M28_Spy1407	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
M28_Spy1407	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
M28_Spy1418	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy1418	PWY-5723	Rubisco shunt
M28_Spy1418	PWY-6891	thiazole biosynthesis II (Bacillus)
M28_Spy1418	PWY-6892	thiazole biosynthesis I (E. coli)
M28_Spy1418	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy1418	PWY-7560	methylerythritol phosphate pathway II
M28_Spy1419	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy1419	PWY-5723	Rubisco shunt
M28_Spy1423	PWY-4261	glycerol degradation I
M28_Spy1423	PWY-6118	glycerol-3-phosphate shuttle
M28_Spy1423	PWY-6952	glycerophosphodiester degradation
M28_Spy1424	PWY-4261	glycerol degradation I
M28_Spy1431	PWY-6906	chitin derivatives degradation
M28_Spy1431	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1431	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1438	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1438	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1443	PWY-7310	D-glucosaminate degradation
M28_Spy1468	PWY-7310	D-glucosaminate degradation
M28_Spy1472	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
M28_Spy1473	PWY-4381	fatty acid biosynthesis initiation I
M28_Spy1473	PWY-5743	3-hydroxypropanoate cycle
M28_Spy1473	PWY-5744	glyoxylate assimilation
M28_Spy1473	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
M28_Spy1473	PWY-6679	jadomycin biosynthesis
M28_Spy1473	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
M28_Spy1474	PWY-4381	fatty acid biosynthesis initiation I
M28_Spy1474	PWY-5743	3-hydroxypropanoate cycle
M28_Spy1474	PWY-5744	glyoxylate assimilation
M28_Spy1474	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
M28_Spy1474	PWY-6679	jadomycin biosynthesis
M28_Spy1474	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
M28_Spy1476	PWY-5971	palmitate biosynthesis II (bacteria and plants)
M28_Spy1476	PWY-5973	<i>cis</i>-vaccenate biosynthesis
M28_Spy1476	PWY-5989	stearate biosynthesis II (bacteria and plants)
M28_Spy1476	PWY-5994	palmitate biosynthesis I (animals and fungi)
M28_Spy1476	PWY-6113	superpathway of mycolate biosynthesis
M28_Spy1476	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
M28_Spy1476	PWY-6519	8-amino-7-oxononanoate biosynthesis I
M28_Spy1476	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
M28_Spy1476	PWYG-321	mycolate biosynthesis
M28_Spy1479	PWY-5367	petroselinate biosynthesis
M28_Spy1479	PWY-5971	palmitate biosynthesis II (bacteria and plants)
M28_Spy1479	PWY-5973	<i>cis</i>-vaccenate biosynthesis
M28_Spy1479	PWY-5989	stearate biosynthesis II (bacteria and plants)
M28_Spy1479	PWY-5994	palmitate biosynthesis I (animals and fungi)
M28_Spy1479	PWY-6113	superpathway of mycolate biosynthesis
M28_Spy1479	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
M28_Spy1479	PWY-6519	8-amino-7-oxononanoate biosynthesis I
M28_Spy1479	PWY-6951	M28_Spy1479|fabG|YP_280944.1|GeneID:3574200
M28_Spy1479	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
M28_Spy1479	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
M28_Spy1479	PWYG-321	mycolate biosynthesis
M28_Spy1480	PWY-4381	fatty acid biosynthesis initiation I
M28_Spy1480	PWY-6799	fatty acid biosynthesis (plant mitochondria)
M28_Spy1480	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
M28_Spy1481	PWY-723	alkylnitronates degradation
M28_Spy1483	PWY-4381	fatty acid biosynthesis initiation I
M28_Spy1496	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
M28_Spy1498	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
M28_Spy1498	PWY-6549	L-glutamine biosynthesis III
M28_Spy1498	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
M28_Spy1498	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
M28_Spy1522	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
M28_Spy1523	PWY-6012	acyl carrier protein metabolism I
M28_Spy1523	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
M28_Spy1525	PWY-3861	mannitol degradation II
M28_Spy1525	PWY-3881	mannitol biosynthesis
M28_Spy1525	PWY-5659	GDP-mannose biosynthesis
M28_Spy1525	PWY-7456	mannan degradation
M28_Spy1525	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
M28_Spy1527	PWY-6902	chitin degradation II
M28_Spy1529	PWY-7310	D-glucosaminate degradation
M28_Spy1530	PWY-621	sucrose degradation III (sucrose invertase)
M28_Spy1535	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
M28_Spy1557	PWY-5480	pyruvate fermentation to ethanol I
M28_Spy1557	PWY-5485	pyruvate fermentation to acetate IV
M28_Spy1557	PWY-5493	reductive monocarboxylic acid cycle
M28_Spy1569	PWY-5674	nitrate reduction IV (dissimilatory)
M28_Spy1578	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
M28_Spy1580	PWY-4202	arsenate detoxification I (glutaredoxin)
M28_Spy1580	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
M28_Spy1580	PWY-6608	guanosine nucleotides degradation III
M28_Spy1580	PWY-6609	adenine and adenosine salvage III
M28_Spy1580	PWY-6611	adenine and adenosine salvage V
M28_Spy1580	PWY-6620	guanine and guanosine salvage
M28_Spy1580	PWY-6627	salinosporamide A biosynthesis
M28_Spy1580	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
M28_Spy1580	PWY-7179	purine deoxyribonucleosides degradation I
M28_Spy1580	PWY-7179-1	purine deoxyribonucleosides degradation
M28_Spy1588	PWY-381	nitrate reduction II (assimilatory)
M28_Spy1588	PWY-5675	nitrate reduction V (assimilatory)
M28_Spy1588	PWY-6549	L-glutamine biosynthesis III
M28_Spy1588	PWY-6963	ammonia assimilation cycle I
M28_Spy1588	PWY-6964	ammonia assimilation cycle II
M28_Spy1591	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy1591	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy1591	PWY-6886	1-butanol autotrophic biosynthesis
M28_Spy1591	PWY-6901	superpathway of glucose and xylose degradation
M28_Spy1591	PWY-7003	glycerol degradation to butanol
M28_Spy1597	PWY-1042	glycolysis IV (plant cytosol)
M28_Spy1597	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy1597	PWY-5484	glycolysis II (from fructose 6-phosphate)
M28_Spy1597	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
M28_Spy1597	PWY-7385	1,3-propanediol biosynthesis (engineered)
M28_Spy1599	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
M28_Spy1599	PWY-7177	UTP and CTP dephosphorylation II
M28_Spy1599	PWY-7185	UTP and CTP dephosphorylation I
M28_Spy1623	PWY-7310	D-glucosaminate degradation
M28_Spy1625	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1625	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1626	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1626	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
M28_Spy1646	PWY-6936	seleno-amino acid biosynthesis
M28_Spy1646	PWY-7274	D-cycloserine biosynthesis
M28_Spy1649	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy1649	PWY-5723	Rubisco shunt
M28_Spy1651	PWY-7310	D-glucosaminate degradation
M28_Spy1652	PWY-7310	D-glucosaminate degradation
M28_Spy1678	PWY-7310	D-glucosaminate degradation
M28_Spy1682	PWY-5958	acridone alkaloid biosynthesis
M28_Spy1682	PWY-6543	4-aminobenzoate biosynthesis
M28_Spy1682	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
M28_Spy1682	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
M28_Spy1682	PWY-6722	candicidin biosynthesis
M28_Spy1683	PWY-5958	acridone alkaloid biosynthesis
M28_Spy1683	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
M28_Spy1683	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
M28_Spy1728	PWY-6349	CDP-archaeol biosynthesis
M28_Spy1729	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
M28_Spy1729	PWY-5723	Rubisco shunt
M28_Spy1730	PWY-5480	pyruvate fermentation to ethanol I
M28_Spy1730	PWY-5485	pyruvate fermentation to acetate IV
M28_Spy1730	PWY-5493	reductive monocarboxylic acid cycle
M28_Spy1731	PWY-7310	D-glucosaminate degradation
M28_Spy1732	PWY-7310	D-glucosaminate degradation
M28_Spy1754	PWY-5028	L-histidine degradation II
M28_Spy1754	PWY-5030	L-histidine degradation III
M28_Spy1755	PWY-5028	L-histidine degradation II
M28_Spy1755	PWY-5030	L-histidine degradation III
M28_Spy1756	PWY-5030	L-histidine degradation III
M28_Spy1757	PWY-5030	L-histidine degradation III
M28_Spy1757	PWY-5497	purine nucleobases degradation II (anaerobic)
M28_Spy1758	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
M28_Spy1758	PWY-2161	folate polyglutamylation
M28_Spy1758	PWY-2201	folate transformations I
M28_Spy1758	PWY-3841	folate transformations II
M28_Spy1761	PWY-5028	L-histidine degradation II
M28_Spy1761	PWY-5030	L-histidine degradation III
M28_Spy1768	PWY-7310	D-glucosaminate degradation
M28_Spy1777	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1777	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1777	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
M28_Spy1879	PWY-5269	cardiolipin biosynthesis II
M28_Spy1879	PWY-5668	cardiolipin biosynthesis I
M28_Spy1885	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
M28_Spy1886	PWY-3801	sucrose degradation II (sucrose synthase)
M28_Spy1886	PWY-6527	stachyose degradation
M28_Spy1886	PWY-6981	chitin biosynthesis
M28_Spy1886	PWY-7238	sucrose biosynthesis II
M28_Spy1886	PWY-7343	UDP-glucose biosynthesis
M28_Spy1890	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
M28_Spy1890	PWY-6596	adenosine nucleotides degradation I
M28_Spy1890	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
