M28_Spy0001	SSF48295	TrpR-like
M28_Spy0001	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0002	SSF55979	DNA clamp
M28_Spy0004	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0004	SSF81271	TGS-like
M28_Spy0005	SSF53178	Peptidyl-tRNA hydrolase-like
M28_Spy0006	SSF141259	CarD-like
M28_Spy0006	SSF143517	TRCF domain-like
M28_Spy0006	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0007	SSF55174	Alpha-L RNA-binding motif
M28_Spy0010	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy0011	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy0012	SSF53271	PRTase-like
M28_Spy0013	SSF140990	FtsH protease domain-like
M28_Spy0013	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0017	SSF54001	Cysteine proteinases
M28_Spy0018	SSF53271	PRTase-like
M28_Spy0019	SSF50249	Nucleic acid-binding proteins
M28_Spy0019	SSF57863	ArfGap/RecO-like zinc finger
M28_Spy0020	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
M28_Spy0021	SSF47336	ACP-like
M28_Spy0022	SSF56104	SAICAR synthase-like
M28_Spy0023	SSF52317	Class I glutamine amidotransferase-like
M28_Spy0023	SSF55326	PurM N-terminal domain-like
M28_Spy0023	SSF56042	PurM C-terminal domain-like
M28_Spy0024	SSF53271	PRTase-like
M28_Spy0024	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
M28_Spy0025	SSF55326	PurM N-terminal domain-like
M28_Spy0025	SSF56042	PurM C-terminal domain-like
M28_Spy0026	SSF53328	Formyltransferase
M28_Spy0027	SSF52335	Methylglyoxal synthase-like
M28_Spy0027	SSF53927	Cytidine deaminase-like
M28_Spy0028	SSF54001	Cysteine proteinases
M28_Spy0029	SSF51246	Rudiment single hybrid motif
M28_Spy0029	SSF52440	PreATP-grasp domain
M28_Spy0029	SSF56059	Glutathione synthetase ATP-binding domain-like
M28_Spy0030	SSF52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
M28_Spy0031	SSF51246	Rudiment single hybrid motif
M28_Spy0031	SSF52440	PreATP-grasp domain
M28_Spy0031	SSF56059	Glutathione synthetase ATP-binding domain-like
M28_Spy0033	SSF48557	L-aspartase-like
M28_Spy0034	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0035	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0036	SSF52788	Phosphotyrosine protein phosphatases I
M28_Spy0037	SSF82185	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
M28_Spy0038	SSF52266	SGNH hydrolase
M28_Spy0039	SSF53720	ALDH-like
M28_Spy0039	SSF56796	Dehydroquinate synthase-like
M28_Spy0040	SSF50129	GroES-like
M28_Spy0040	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0042	SSF54999	Ribosomal protein S10
M28_Spy0043	SSF50447	Translation proteins
M28_Spy0044	SSF52166	Ribosomal protein L4
M28_Spy0045	SSF54189	Ribosomal proteins S24e, L23 and L15e
M28_Spy0046	SSF50104	Translation proteins SH3-like domain
M28_Spy0046	SSF50249	Nucleic acid-binding proteins
M28_Spy0047	SSF54570	Ribosomal protein S19
M28_Spy0048	SSF54843	Ribosomal protein L22
M28_Spy0049	SSF54814	Prokaryotic type KH domain (KH-domain type II)
M28_Spy0049	SSF54821	Ribosomal protein S3 C-terminal domain
M28_Spy0050	SSF54686	Ribosomal protein L16p/L10e
M28_Spy0051	SSF46561	Ribosomal protein L29 (L29p)
M28_Spy0052	SSF50249	Nucleic acid-binding proteins
M28_Spy0053	SSF50193	Ribosomal protein L14
M28_Spy0054	SSF50104	Translation proteins SH3-like domain
M28_Spy0055	SSF55282	RL5-like
M28_Spy0056	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
M28_Spy0057	SSF56047	Ribosomal protein S8
M28_Spy0058	SSF56053	Ribosomal protein L6
M28_Spy0059	SSF53137	Translational machinery components
M28_Spy0060	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0060	SSF54768	dsRNA-binding domain-like
M28_Spy0061	SSF55129	Ribosomal protein L30p/L7e
M28_Spy0062	SSF52080	Ribosomal proteins L15p and L18e
M28_Spy0063	SSF103491	Preprotein translocase SecY subunit
M28_Spy0064	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0065	SSF50249	Nucleic acid-binding proteins
M28_Spy0066	SSF57840	Ribosomal protein L36
M28_Spy0067	SSF46946	S13-like H2TH domain
M28_Spy0068	SSF53137	Translational machinery components
M28_Spy0069	SSF47789	C-terminal domain of RNA polymerase alpha subunit
M28_Spy0069	SSF55257	RBP11-like subunits of RNA polymerase
M28_Spy0069	SSF56553	Insert subdomain of RNA polymerase alpha subunit
M28_Spy0070	SSF64263	Prokaryotic ribosomal protein L17
M28_Spy0073	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0074	SSF55060	GHMP Kinase, C-terminal domain
M28_Spy0075	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0076	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0077	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
M28_Spy0078	SSF54197	HIT-like
M28_Spy0079	SSF52374	Nucleotidylyl transferase
M28_Spy0079	SSF55174	Alpha-L RNA-binding motif
M28_Spy0080	SSF53955	Lysozyme-like
M28_Spy0080	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy0081	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
M28_Spy0082	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
M28_Spy0084	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0086	SSF54523	Pili subunits
M28_Spy0091	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0092	SSF53067	Actin-like ATPase domain
M28_Spy0094	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
M28_Spy0094	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0095	SSF101821	Aminopeptidase/glucanase lid domain
M28_Spy0095	SSF53187	Zn-dependent exopeptidases
M28_Spy0098	SSF52833	Thioredoxin-like
M28_Spy0099	SSF50249	Nucleic acid-binding proteins
M28_Spy0100	SSF50249	Nucleic acid-binding proteins
M28_Spy0101	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0102	SSF51395	FMN-linked oxidoreductases
M28_Spy0103	SSF118352	HSP33 redox switch-like
M28_Spy0103	SSF64397	Hsp33 domain
M28_Spy0106	SSF63817	Sortase
M28_Spy0108	SSF51306	LexA/Signal peptidase
M28_Spy0110	SSF63817	Sortase
M28_Spy0112	SSF46689	Homeodomain-like
M28_Spy0113	SSF49401	Bacterial adhesins
M28_Spy0113	SSF49478	Cna protein B-type domain
M28_Spy0116	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0116	SSF53850	Periplasmic binding protein-like II
M28_Spy0117	SSF53901	Thiolase-like
M28_Spy0118	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy0119	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy0121	SSF55298	YjgF-like
M28_Spy0125	SSF81333	F1F0 ATP synthase subunit C
M28_Spy0127	SSF103486	V-type ATP synthase subunit C
M28_Spy0128	SSF159468	AtpF-like
M28_Spy0129	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0129	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0129	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0130	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0134	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0135	SSF53822	Periplasmic binding protein-like I
M28_Spy0136	SSF50104	Translation proteins SH3-like domain
M28_Spy0136	SSF82679	N-utilization substance G protein NusG, N-terminal domain
M28_Spy0139	SSF56978	Perfringolysin
M28_Spy0144	SSF53383	PLP-dependent transferases
M28_Spy0145	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy0145	SSF50677	ValRS/IleRS/LeuRS editing domain
M28_Spy0145	SSF52374	Nucleotidylyl transferase
M28_Spy0147	SSF52794	PTS system IIB component-like
M28_Spy0148	SSF55804	Phoshotransferase/anion transport protein
M28_Spy0149	SSF51366	Ribulose-phoshate binding barrel
M28_Spy0150	SSF51658	Xylose isomerase-like
M28_Spy0151	SSF53639	AraD/HMP-PK domain-like
M28_Spy0153	SSF63520	PTS-regulatory domain, PRD
M28_Spy0154	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0155	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0155	SSF54631	CBS-domain pair
M28_Spy0156	SSF161098	MetI-like
M28_Spy0156	SSF53850	Periplasmic binding protein-like II
M28_Spy0157	SSF47807	5' to 3' exonuclease, C-terminal subdomain
M28_Spy0157	SSF53098	Ribonuclease H-like
M28_Spy0157	SSF56672	DNA/RNA polymerases
M28_Spy0157	SSF88723	PIN domain-like
M28_Spy0158	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0159	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0161	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy0162	SSF110849	ParB/Sulfiredoxin
M28_Spy0163	SSF53098	Ribonuclease H-like
M28_Spy0164	SSF53098	Ribonuclease H-like
M28_Spy0166	SSF46689	Homeodomain-like
M28_Spy0168	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
M28_Spy0168	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
M28_Spy0169	SSF53098	Ribonuclease H-like
M28_Spy0170	SSF46689	Homeodomain-like
M28_Spy0173	SSF51713	tRNA-guanine transglycosylase
M28_Spy0174	SSF161219	CHY zinc finger-like
M28_Spy0176	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0177	SSF53927	Cytidine deaminase-like
M28_Spy0178	SSF54001	Cysteine proteinases
M28_Spy0180	SSF50203	Bacterial enterotoxins
M28_Spy0180	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy0183	SSF53697	SIS domain
M28_Spy0186	SSF144091	Rhomboid-like
M28_Spy0187	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0188	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
M28_Spy0188	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0189	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0190	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0190	SSF90123	ABC transporter transmembrane region
M28_Spy0191	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0191	SSF90123	ABC transporter transmembrane region
M28_Spy0193	SSF51283	dUTPase-like
M28_Spy0194	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0194	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0195	SSF53056	beta-carbonic anhydrase, cab
M28_Spy0196	SSF51219	TRAP-like
M28_Spy0197	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
M28_Spy0197	SSF52374	Nucleotidylyl transferase
M28_Spy0198	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0200	SSF52172	CheY-like
M28_Spy0201	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0203	SSF82708	R3H domain
M28_Spy0206	SSF51366	Ribulose-phoshate binding barrel
M28_Spy0207	SSF53850	Periplasmic binding protein-like II
M28_Spy0208	SSF161098	MetI-like
M28_Spy0209	SSF161098	MetI-like
M28_Spy0211	SSF51569	Aldolase
M28_Spy0212	SSF53067	Actin-like ATPase domain
M28_Spy0213	SSF46689	Homeodomain-like
M28_Spy0213	SSF53697	SIS domain
M28_Spy0214	SSF51556	Metallo-dependent hydrolases
M28_Spy0215	SSF110455	Toprim domain
M28_Spy0216	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0217	SSF50249	Nucleic acid-binding proteins
M28_Spy0217	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0218	SSF51366	Ribulose-phoshate binding barrel
M28_Spy0219	SSF63999	Thiamin pyrophosphokinase, catalytic domain
M28_Spy0220	SSF58113	Apolipoprotein A-I
M28_Spy0221	SSF109604	HD-domain/PDEase-like
M28_Spy0222	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0222	SSF53271	PRTase-like
M28_Spy0224	SSF50249	Nucleic acid-binding proteins
M28_Spy0225	SSF47973	Ribosomal protein S7
M28_Spy0226	SSF50447	Translation proteins
M28_Spy0226	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0226	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0226	SSF54980	EF-G C-terminal domain-like
M28_Spy0227	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0227	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
M28_Spy0229	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0230	SSF161098	MetI-like
M28_Spy0230	SSF53850	Periplasmic binding protein-like II
M28_Spy0237	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0238	SSF101960	Stabilizer of iron transporter SufD
M28_Spy0239	SSF53383	PLP-dependent transferases
M28_Spy0240	SSF82649	SufE/NifU
M28_Spy0241	SSF101960	Stabilizer of iron transporter SufD
M28_Spy0242	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy0243	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy0243	SSF69189	Penicillin-binding protein associated domain
M28_Spy0244	SSF53850	Periplasmic binding protein-like II
M28_Spy0245	SSF161098	MetI-like
M28_Spy0246	SSF161098	MetI-like
M28_Spy0247	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0248	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0252	SSF56784	HAD-like
M28_Spy0253	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0254	SSF75471	YhbY-like
M28_Spy0255	SSF52374	Nucleotidylyl transferase
M28_Spy0256	SSF109604	HD-domain/PDEase-like
M28_Spy0257	SSF81301	Nucleotidyltransferase
M28_Spy0258	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0259	SSF52374	Nucleotidylyl transferase
M28_Spy0261	SSF75625	YebC-like
M28_Spy0262	SSF53850	Periplasmic binding protein-like II
M28_Spy0263	SSF53850	Periplasmic binding protein-like II
M28_Spy0264	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0264	SSF55021	ACT-like
M28_Spy0265	SSF161098	MetI-like
M28_Spy0267	SSF118215	Proton glutamate symport protein
M28_Spy0268	SSF116726	TrkA C-terminal domain-like
M28_Spy0268	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0270	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0271	SSF140478	LemA-like
M28_Spy0274	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy0274	SSF52172	CheY-like
M28_Spy0275	SSF158472	HAMP domain-like
M28_Spy0275	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy0275	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0278	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0279	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0280	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0282	SSF51984	MurCD N-terminal domain
M28_Spy0282	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy0282	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy0283	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0285	SSF46557	GreA transcript cleavage protein, N-terminal domain
M28_Spy0285	SSF54534	FKBP-like
M28_Spy0287	SSF54975	Acylphosphatase/BLUF domain-like
M28_Spy0288	SSF55315	L30e-like
M28_Spy0288	SSF75217	alpha/beta knot
M28_Spy0289	SSF109604	HD-domain/PDEase-like
M28_Spy0292	SSF53681	Aspartate/glutamate racemase
M28_Spy0293	SSF52972	ITPase-like
M28_Spy0294	SSF56300	Metallo-dependent phosphatases
M28_Spy0295	SSF54631	CBS-domain pair
M28_Spy0296	SSF56349	DNA breaking-rejoining enzymes
M28_Spy0298	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0299	SSF55120	Pseudouridine synthase
M28_Spy0299	SSF55174	Alpha-L RNA-binding motif
M28_Spy0301	SSF75217	alpha/beta knot
M28_Spy0303	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
M28_Spy0304	SSF102114	Radical SAM enzymes
M28_Spy0305	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0306	SSF54631	CBS-domain pair
M28_Spy0306	SSF56176	FAD-binding/transporter-associated domain-like
M28_Spy0307	SSF102114	Radical SAM enzymes
M28_Spy0308	SSF64182	DHH phosphoesterases
M28_Spy0310	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
M28_Spy0311	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
M28_Spy0312	SSF53807	"Helical backbone" metal receptor
M28_Spy0313	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0314	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy0314	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy0314	SSF63418	MurE/MurF N-terminal domain
M28_Spy0316	SSF53271	PRTase-like
M28_Spy0317	SSF52096	ClpP/crotonase
M28_Spy0319	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0320	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0323	SSF53790	Tetrapyrrole methylase
M28_Spy0325	SSF110395	CutC-like
M28_Spy0326	SSF52833	Thioredoxin-like
M28_Spy0327	SSF56219	DNase I-like
M28_Spy0328	SSF51395	FMN-linked oxidoreductases
M28_Spy0329	SSF52025	PA domain
M28_Spy0329	SSF52743	Subtilisin-like
M28_Spy0332	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy0332	SSF50249	Nucleic acid-binding proteins
M28_Spy0332	SSF52374	Nucleotidylyl transferase
M28_Spy0334	SSF47240	Ferritin-like
M28_Spy0335	SSF52218	Flavoproteins
M28_Spy0336	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
M28_Spy0336	SSF51998	PFL-like glycyl radical enzymes
M28_Spy0337	SSF56399	ADP-ribosylation
M28_Spy0345	SSF50203	Bacterial enterotoxins
M28_Spy0345	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy0348	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0349	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0349	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
M28_Spy0350	SSF103473	MFS general substrate transporter
M28_Spy0351	SSF51161	Trimeric LpxA-like enzymes
M28_Spy0351	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0352	SSF55811	Nudix
M28_Spy0354	SSF53167	Purine and uridine phosphorylases
M28_Spy0356	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0356	SSF47979	Iron-dependent repressor protein, dimerization domain
M28_Spy0357	SSF53807	"Helical backbone" metal receptor
M28_Spy0358	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0359	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
M28_Spy0360	SSF50891	Cyclophilin-like
M28_Spy0361	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0361	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0363	SSF46906	Ribosomal protein L11, C-terminal domain
M28_Spy0363	SSF54747	Ribosomal L11/L12e N-terminal domain
M28_Spy0364	SSF56808	Ribosomal protein L1
M28_Spy0365	SSF53633	Carbamate kinase-like
M28_Spy0366	SSF55194	Ribosome recycling factor, RRF
M28_Spy0367	SSF50249	Nucleic acid-binding proteins
M28_Spy0368	SSF55068	Peptide methionine sulfoxide reductase
M28_Spy0369	SSF140652	YozE-like
M28_Spy0370	SSF54106	LysM domain
M28_Spy0371	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0372	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0373	SSF52141	Uracil-DNA glycosylase-like
M28_Spy0374	SSF55486	Metalloproteases ("zincins"), catalytic domain
M28_Spy0376	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0376	SSF54814	Prokaryotic type KH domain (KH-domain type II)
M28_Spy0377	SSF55811	Nudix
M28_Spy0395	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0396	SSF46946	S13-like H2TH domain
M28_Spy0396	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
M28_Spy0396	SSF81624	N-terminal domain of MutM-like DNA repair proteins
M28_Spy0397	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0398	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0399	SSF103473	MFS general substrate transporter
M28_Spy0400	SSF57829	Zn-binding ribosomal proteins
M28_Spy0402	SSF50249	Nucleic acid-binding proteins
M28_Spy0403	SSF74982	Small protein B (SmpB)
M28_Spy0404	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase
M28_Spy0405	SSF53182	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
M28_Spy0408	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0409	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
M28_Spy0410	SSF55469	FMN-dependent nitroreductase-like
M28_Spy0411	SSF53092	Creatinase/prolidase N-terminal domain
M28_Spy0411	SSF55920	Creatinase/aminopeptidase
M28_Spy0412	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0412	SSF53822	Periplasmic binding protein-like I
M28_Spy0413	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
M28_Spy0414	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
M28_Spy0415	SSF52954	Class II aaRS ABD-related
M28_Spy0415	SSF55186	ThrRS/AlaRS common domain
M28_Spy0415	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0415	SSF81271	TGS-like
M28_Spy0416	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0420	SSF53901	Thiolase-like
M28_Spy0421	SSF56801	Acetyl-CoA synthetase-like
M28_Spy0423	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy0423	SSF52172	CheY-like
M28_Spy0424	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy0424	SSF55785	PYP-like sensor domain (PAS domain)
M28_Spy0424	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0425	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0426	SSF54768	dsRNA-binding domain-like
M28_Spy0426	SSF69065	RNase III domain-like
M28_Spy0427	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0427	SSF75553	Smc hinge domain
M28_Spy0428	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0429	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0429	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
M28_Spy0430	SSF51658	Xylose isomerase-like
M28_Spy0431	SSF144010	CofE-like
M28_Spy0432	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0434	SSF53795	PEP carboxykinase-like
M28_Spy0435	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0437	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
M28_Spy0437	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0437	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
M28_Spy0438	SSF103473	MFS general substrate transporter
M28_Spy0439	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0445	SSF143011	RelE-like
M28_Spy0447	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0448	SSF53098	Ribonuclease H-like
M28_Spy0449	SSF46689	Homeodomain-like
M28_Spy0451	SSF56784	HAD-like
M28_Spy0452	SSF56784	HAD-like
M28_Spy0453	SSF47364	Domain of the SRP/SRP receptor G-proteins
M28_Spy0453	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0454	SSF103473	MFS general substrate transporter
M28_Spy0455	SSF50151	SacY-like RNA-binding domain
M28_Spy0455	SSF63520	PTS-regulatory domain, PRD
M28_Spy0456	SSF51261	Duplicated hybrid motif
M28_Spy0456	SSF55604	Glucose permease domain IIB
M28_Spy0457	SSF51445	(Trans)glycosidases
M28_Spy0461	SSF158832	Tex N-terminal region-like
M28_Spy0461	SSF47781	RuvA domain 2-like
M28_Spy0461	SSF50249	Nucleic acid-binding proteins
M28_Spy0461	SSF53098	Ribonuclease H-like
M28_Spy0465	SSF53795	PEP carboxykinase-like
M28_Spy0465	SSF75138	HprK N-terminal domain-like
M28_Spy0471	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
M28_Spy0474	SSF50249	Nucleic acid-binding proteins
M28_Spy0474	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0475	SSF56784	HAD-like
M28_Spy0476	SSF53254	Phosphoglycerate mutase-like
M28_Spy0477	SSF55826	YbaK/ProRS associated domain
M28_Spy0479	SSF51445	(Trans)glycosidases
M28_Spy0482	SSF52833	Thioredoxin-like
M28_Spy0483	SSF55486	Metalloproteases ("zincins"), catalytic domain
M28_Spy0484	SSF51621	Phosphoenolpyruvate/pyruvate domain
M28_Spy0487	SSF50447	Translation proteins
M28_Spy0487	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
M28_Spy0487	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0488	SSF51351	Triosephosphate isomerase (TIM)
M28_Spy0489	SSF46589	tRNA-binding arm
M28_Spy0489	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0490	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0491	SSF56784	HAD-like
M28_Spy0493	SSF109604	HD-domain/PDEase-like
M28_Spy0494	SSF50814	Lipocalins
M28_Spy0495	SSF56784	HAD-like
M28_Spy0495	SSF81653	Calcium ATPase, transduction domain A
M28_Spy0495	SSF81660	Metal cation-transporting ATPase, ATP-binding domain N
M28_Spy0495	SSF81665	Calcium ATPase, transmembrane domain M
M28_Spy0496	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0496	SSF53822	Periplasmic binding protein-like I
M28_Spy0497	SSF48230	Chondroitin AC/alginate lyase
M28_Spy0500	SSF52728	PTS IIb component
M28_Spy0501	SSF48208	Six-hairpin glycosidases
M28_Spy0502	SSF53062	PTS system fructose IIA component-like
M28_Spy0503	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0504	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
M28_Spy0505	SSF53613	Ribokinase-like
M28_Spy0506	SSF51569	Aldolase
M28_Spy0507	SSF56784	HAD-like
M28_Spy0508	SSF46548	alpha-helical ferredoxin
M28_Spy0509	SSF75620	Release factor
M28_Spy0510	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0512	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0513	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0514	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0514	SSF53098	Ribonuclease H-like
M28_Spy0515	SSF53383	PLP-dependent transferases
M28_Spy0516	SSF50249	Nucleic acid-binding proteins
M28_Spy0516	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0517	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0518	SSF142338	CofD-like
M28_Spy0519	SSF55608	Homing endonucleases
M28_Spy0521	SSF50814	Lipocalins
M28_Spy0521	SSF53807	"Helical backbone" metal receptor
M28_Spy0522	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0522	SSF64288	Chorismate lyase-like
M28_Spy0523	SSF53697	SIS domain
M28_Spy0524	SSF143800	L28p-like
M28_Spy0525	SSF64182	DHH phosphoesterases
M28_Spy0526	SSF52218	Flavoproteins
M28_Spy0527	SSF48600	Chorismate mutase II
M28_Spy0528	SSF81340	Clc chloride channel
M28_Spy0529	SSF50104	Translation proteins SH3-like domain
M28_Spy0530	SSF56349	DNA breaking-rejoining enzymes
M28_Spy0531	SSF56784	HAD-like
M28_Spy0532	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0532	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0532	SSF56719	Type II DNA topoisomerase
M28_Spy0534	SSF160515	YueI-like
M28_Spy0535	SSF51604	Enolase C-terminal domain-like
M28_Spy0535	SSF54826	Enolase N-terminal domain-like
M28_Spy0541	SSF55469	FMN-dependent nitroreductase-like
M28_Spy0546	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0549	SSF56219	DNase I-like
M28_Spy0551	SSF47781	RuvA domain 2-like
M28_Spy0551	SSF50249	Nucleic acid-binding proteins
M28_Spy0551	SSF52113	BRCT domain
M28_Spy0551	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
M28_Spy0552	SSF111331	NAD kinase/diacylglycerol kinase-like
M28_Spy0553	SSF81333	F1F0 ATP synthase subunit C
M28_Spy0554	SSF81336	F1F0 ATP synthase subunit A
M28_Spy0555	SSF81573	F1F0 ATP synthase subunit B, membrane domain
M28_Spy0556	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
M28_Spy0557	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0557	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0557	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0558	SSF52943	ATP synthase (F1-ATPase), gamma subunit
M28_Spy0559	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0559	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
M28_Spy0559	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0560	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
M28_Spy0562	SSF55205	EPT/RTPC-like
M28_Spy0566	SSF46589	tRNA-binding arm
M28_Spy0566	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0567	SSF46955	Putative DNA-binding domain
M28_Spy0567	SSF50249	Nucleic acid-binding proteins
M28_Spy0567	SSF54991	Anticodon-binding domain of PheRS
M28_Spy0567	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0567	SSF56037	PheT/TilS domain
M28_Spy0568	SSF82784	OsmC-like
M28_Spy0571	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0573	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0573	SSF52980	Restriction endonuclease-like
M28_Spy0574	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0574	SSF52980	Restriction endonuclease-like
M28_Spy0575	SSF53850	Periplasmic binding protein-like II
M28_Spy0577	SSF81330	Gated mechanosensitive channel
M28_Spy0578	SSF56731	DNA primase core
M28_Spy0578	SSF57783	Zinc beta-ribbon
M28_Spy0579	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
M28_Spy0579	SSF88946	Sigma2 domain of RNA polymerase sigma factors
M28_Spy0580	SSF117916	Fe-S cluster assembly (FSCA) domain-like
M28_Spy0581	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0582	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
M28_Spy0583	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0585	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0586	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0589	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0593	SSF53187	Zn-dependent exopeptidases
M28_Spy0593	SSF55031	Bacterial exopeptidase dimerisation domain
M28_Spy0595	SSF54862	4Fe-4S ferredoxins
M28_Spy0597	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0598	SSF54364	Translation initiation factor IF3, N-terminal domain
M28_Spy0598	SSF55200	Translation initiation factor IF3, C-terminal domain
M28_Spy0599	SSF143034	L35p-like
M28_Spy0600	SSF74731	Ribosomal protein L20
M28_Spy0601	SSF53649	Alkaline phosphatase-like
M28_Spy0602	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0602	SSF88697	PUA domain-like
M28_Spy0603	SSF51569	Aldolase
M28_Spy0604	SSF103263	Chorismate synthase, AroC
M28_Spy0605	SSF158622	YheA/YmcA-like
M28_Spy0607	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0607	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
M28_Spy0608	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy0608	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy0610	SSF53383	PLP-dependent transferases
M28_Spy0611	SSF143437	THUMP domain-like
M28_Spy0611	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy0612	SSF56300	Metallo-dependent phosphatases
M28_Spy0613	SSF141091	L21p-like
M28_Spy0614	SSF118010	TM1457-like
M28_Spy0615	SSF110324	Ribosomal L27 protein-like
M28_Spy0616	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0616	SSF53850	Periplasmic binding protein-like II
M28_Spy0618	SSF55120	Pseudouridine synthase
M28_Spy0618	SSF55174	Alpha-L RNA-binding motif
M28_Spy0619	SSF53271	PRTase-like
M28_Spy0621	SSF53671	Aspartate/ornithine carbamoyltransferase
M28_Spy0622	SSF52021	Carbamoyl phosphate synthetase, small subunit N-terminal domain
M28_Spy0622	SSF52317	Class I glutamine amidotransferase-like
M28_Spy0624	SSF48108	Carbamoyl phosphate synthetase, large subunit connection domain
M28_Spy0624	SSF52335	Methylglyoxal synthase-like
M28_Spy0624	SSF52440	PreATP-grasp domain
M28_Spy0624	SSF56059	Glutathione synthetase ATP-binding domain-like
M28_Spy0625	SSF111369	HlyD-like secretion proteins
M28_Spy0626	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0628	SSF51695	PLC-like phosphodiesterases
M28_Spy0629	SSF54565	Ribosomal protein S16
M28_Spy0630	SSF54814	Prokaryotic type KH domain (KH-domain type II)
M28_Spy0632	SSF52058	L domain-like
M28_Spy0633	SSF50475	FMN-binding split barrel
M28_Spy0634	SSF161111	Cation efflux protein transmembrane domain-like
M28_Spy0635	SSF46689	Homeodomain-like
M28_Spy0636	SSF50346	PRC-barrel domain
M28_Spy0636	SSF50447	Translation proteins
M28_Spy0637	SSF75217	alpha/beta knot
M28_Spy0638	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0640	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
M28_Spy0640	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0641	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy0641	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0642	SSF53613	Ribokinase-like
M28_Spy0643	SSF52794	PTS system IIB component-like
M28_Spy0643	SSF55804	Phoshotransferase/anion transport protein
M28_Spy0648	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy0649	SSF54001	Cysteine proteinases
M28_Spy0650	SSF54919	Nucleoside diphosphate kinase, NDK
M28_Spy0651	SSF54611	SecB-like
M28_Spy0652	SSF82549	DAK1/DegV-like
M28_Spy0653	SSF81301	Nucleotidyltransferase
M28_Spy0653	SSF81891	Poly A polymerase C-terminal region-like
M28_Spy0654	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0657	SSF56420	Peptide deformylase
M28_Spy0658	SSF55816	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
M28_Spy0658	SSF56300	Metallo-dependent phosphatases
M28_Spy0659	SSF81301	Nucleotidyltransferase
M28_Spy0660	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy0660	SSF52172	CheY-like
M28_Spy0661	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy0661	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0662	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0662	SSF55060	GHMP Kinase, C-terminal domain
M28_Spy0663	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0663	SSF55060	GHMP Kinase, C-terminal domain
M28_Spy0664	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0664	SSF55060	GHMP Kinase, C-terminal domain
M28_Spy0665	SSF51395	FMN-linked oxidoreductases
M28_Spy0666	SSF55035	NAD-binding domain of HMG-CoA reductase
M28_Spy0666	SSF56542	Substrate-binding domain of HMG-CoA reductase
M28_Spy0667	SSF53901	Thiolase-like
M28_Spy0668	SSF55831	Thymidylate synthase/dCMP hydroxymethylase
M28_Spy0669	SSF53597	Dihydrofolate reductase-like
M28_Spy0671	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0671	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
M28_Spy0672	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0674	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0675	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy0675	SSF75445	D-ribose-5-phosphate isomerase (RpiA), lid domain
M28_Spy0676	SSF143856	DeoB insert domain-like
M28_Spy0676	SSF53649	Alkaline phosphatase-like
M28_Spy0677	SSF52833	Thioredoxin-like
M28_Spy0678	SSF53167	Purine and uridine phosphorylases
M28_Spy0679	SSF53167	Purine and uridine phosphorylases
M28_Spy0681	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0681	SSF53850	Periplasmic binding protein-like II
M28_Spy0683	SSF51366	Ribulose-phoshate binding barrel
M28_Spy0684	SSF53271	PRTase-like
M28_Spy0685	SSF75304	Amidase signature (AS) enzymes
M28_Spy0686	SSF53850	Periplasmic binding protein-like II
M28_Spy0687	SSF161098	MetI-like
M28_Spy0688	SSF52141	Uracil-DNA glycosylase-like
M28_Spy0689	SSF51338	Composite domain of metallo-dependent hydrolases
M28_Spy0689	SSF51556	Metallo-dependent hydrolases
M28_Spy0691	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy0691	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0691	SSF56719	Type II DNA topoisomerase
M28_Spy0692	SSF101904	GyrA/ParC C-terminal domain-like
M28_Spy0692	SSF56719	Type II DNA topoisomerase
M28_Spy0693	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
M28_Spy0695	SSF50249	Nucleic acid-binding proteins
M28_Spy0697	SSF52821	Rhodanese/Cell cycle control phosphatase
M28_Spy0699	SSF47616	GST C-terminal domain-like
M28_Spy0702	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0703	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0705	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0706	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0707	SSF64182	DHH phosphoesterases
M28_Spy0708	SSF53271	PRTase-like
M28_Spy0709	SSF158499	DnaD domain-like
M28_Spy0710	SSF48150	DNA-glycosylase
M28_Spy0711	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0712	SSF102705	NIF3 (NGG1p interacting factor 3)-like
M28_Spy0713	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0713	SSF54373	FAD-linked reductases, C-terminal domain
M28_Spy0714	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy0715	SSF51182	RmlC-like cupins
M28_Spy0716	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0717	SSF55811	Nudix
M28_Spy0719	SSF48452	TPR-like
M28_Spy0722	SSF53822	Periplasmic binding protein-like I
M28_Spy0725	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0726	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy0727	SSF53474	alpha/beta-Hydrolases
M28_Spy0729	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0730	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
M28_Spy0731	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
M28_Spy0731	SSF52922	TK C-terminal domain-like
M28_Spy0732	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
M28_Spy0732	SSF51230	Single hybrid motif
M28_Spy0732	SSF52777	CoA-dependent acyltransferases
M28_Spy0734	SSF51230	Single hybrid motif
M28_Spy0734	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0734	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
M28_Spy0736	SSF48230	Chondroitin AC/alginate lyase
M28_Spy0736	SSF74650	Galactose mutarotase-like
M28_Spy0737	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0737	SSF82649	SufE/NifU
M28_Spy0738	SSF52317	Class I glutamine amidotransferase-like
M28_Spy0739	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy0740	SSF143597	YojJ-like
M28_Spy0742	SSF53738	Phosphoglucomutase, first 3 domains
M28_Spy0742	SSF55957	Phosphoglucomutase, C-terminal domain
M28_Spy0744	SSF102114	Radical SAM enzymes
M28_Spy0745	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
M28_Spy0746	SSF56784	HAD-like
M28_Spy0750	SSF143430	TTP0101/SSO1404-like
M28_Spy0753	SSF50447	Translation proteins
M28_Spy0753	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0753	SSF54980	EF-G C-terminal domain-like
M28_Spy0755	SSF51316	Mss4-like
M28_Spy0757	SSF53062	PTS system fructose IIA component-like
M28_Spy0758	SSF52728	PTS IIb component
M28_Spy0761	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0762	SSF46689	Homeodomain-like
M28_Spy0762	SSF52172	CheY-like
M28_Spy0763	SSF53850	Periplasmic binding protein-like II
M28_Spy0764	SSF53720	ALDH-like
M28_Spy0765	SSF46600	C-terminal UvrC-binding domain of UvrB
M28_Spy0765	SSF47781	RuvA domain 2-like
M28_Spy0765	SSF82771	GIY-YIG endonuclease
M28_Spy0766	SSF55469	FMN-dependent nitroreductase-like
M28_Spy0767	SSF53187	Zn-dependent exopeptidases
M28_Spy0767	SSF55031	Bacterial exopeptidase dimerisation domain
M28_Spy0768	SSF116878	TrmE connector domain
M28_Spy0768	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0769	SSF160369	Ribosomal protein L10-like
M28_Spy0770	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
M28_Spy0770	SSF54736	ClpS-like
M28_Spy0774	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0779	SSF52172	CheY-like
M28_Spy0780	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy0780	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0782	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0782	SSF90123	ABC transporter transmembrane region
M28_Spy0783	SSF158745	LanC-like
M28_Spy0785	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0788	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0792	SSF56349	DNA breaking-rejoining enzymes
M28_Spy0793	SSF56349	DNA breaking-rejoining enzymes
M28_Spy0794	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy0794	SSF69189	Penicillin-binding protein associated domain
M28_Spy0795	SSF88713	Glycoside hydrolase/deacetylase
M28_Spy0797	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy0797	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy0798	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
M28_Spy0799	SSF51717	Dihydropteroate synthetase-like
M28_Spy0800	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
M28_Spy0801	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
M28_Spy0802	SSF56176	FAD-binding/transporter-associated domain-like
M28_Spy0802	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
M28_Spy0803	SSF50331	MOP-like
M28_Spy0803	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0804	SSF161098	MetI-like
M28_Spy0805	SSF161098	MetI-like
M28_Spy0806	SSF53850	Periplasmic binding protein-like II
M28_Spy0807	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0807	SSF52172	CheY-like
M28_Spy0808	SSF103190	Sensory domain-like
M28_Spy0808	SSF55890	Sporulation response regulatory protein Spo0B
M28_Spy0810	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0810	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
M28_Spy0811	SSF50129	GroES-like
M28_Spy0811	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0812	SSF56784	HAD-like
M28_Spy0813	SSF81340	Clc chloride channel
M28_Spy0814	SSF52266	SGNH hydrolase
M28_Spy0816	SSF47781	RuvA domain 2-like
M28_Spy0817	SSF52317	Class I glutamine amidotransferase-like
M28_Spy0818	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0818	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0819	SSF160800	Lp2179-like
M28_Spy0820	SSF53383	PLP-dependent transferases
M28_Spy0821	SSF53271	PRTase-like
M28_Spy0822	SSF55154	CYTH-like phosphatases
M28_Spy0823	SSF81301	Nucleotidyltransferase
M28_Spy0824	SSF111331	NAD kinase/diacylglycerol kinase-like
M28_Spy0825	SSF55120	Pseudouridine synthase
M28_Spy0826	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
M28_Spy0827	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0829	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0830	SSF161098	MetI-like
M28_Spy0830	SSF53850	Periplasmic binding protein-like II
M28_Spy0831	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
M28_Spy0832	SSF53271	PRTase-like
M28_Spy0834	SSF143631	ApbE-like
M28_Spy0835	SSF55331	Tautomerase/MIF
M28_Spy0836	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0836	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
M28_Spy0837	SSF75620	Release factor
M28_Spy0838	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0839	SSF55821	YrdC/RibB
M28_Spy0840	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0841	SSF53383	PLP-dependent transferases
M28_Spy0843	SSF53955	Lysozyme-like
M28_Spy0844	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0844	SSF90123	ABC transporter transmembrane region
M28_Spy0845	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0845	SSF90123	ABC transporter transmembrane region
M28_Spy0846	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0846	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
M28_Spy0847	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0847	SSF56327	LDH C-terminal domain-like
M28_Spy0848	SSF101904	GyrA/ParC C-terminal domain-like
M28_Spy0848	SSF56719	Type II DNA topoisomerase
M28_Spy0849	SSF63817	Sortase
M28_Spy0850	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
M28_Spy0853	SSF111331	NAD kinase/diacylglycerol kinase-like
M28_Spy0856	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0857	SSF53098	Ribonuclease H-like
M28_Spy0858	SSF102405	MCP/YpsA-like
M28_Spy0859	SSF56712	Prokaryotic type I DNA topoisomerase
M28_Spy0859	SSF57783	Zinc beta-ribbon
M28_Spy0860	SSF53850	Periplasmic binding protein-like II
M28_Spy0863	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy0863	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
M28_Spy0866	SSF51905	FAD/NAD(P)-binding domain
M28_Spy0867	SSF51569	Aldolase
M28_Spy0867	SSF89000	post-HMGL domain-like
M28_Spy0869	SSF51230	Single hybrid motif
M28_Spy0872	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0872	SSF48008	GntR ligand-binding domain-like
M28_Spy0875	SSF51230	Single hybrid motif
M28_Spy0879	SSF51621	Phosphoenolpyruvate/pyruvate domain
M28_Spy0880	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy0882	SSF51569	Aldolase
M28_Spy0882	SSF89000	post-HMGL domain-like
M28_Spy0883	SSF52374	Nucleotidylyl transferase
M28_Spy0883	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0885	SSF56349	DNA breaking-rejoining enzymes
M28_Spy0886	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy0886	SSF51306	LexA/Signal peptidase
M28_Spy0887	SSF47446	Signal peptide-binding domain
M28_Spy0887	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0888	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
M28_Spy0889	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0889	SSF64288	Chorismate lyase-like
M28_Spy0890	SSF51126	Pectin lyase-like
M28_Spy0891	SSF52317	Class I glutamine amidotransferase-like
M28_Spy0891	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy0891	SSF54810	GMP synthetase C-terminal dimerisation domain
M28_Spy0892	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy0893	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0895	SSF53613	Ribokinase-like
M28_Spy0896	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0896	SSF53383	PLP-dependent transferases
M28_Spy0898	SSF56024	Phospholipase D/nuclease
M28_Spy0899	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0900	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0900	SSF82649	SufE/NifU
M28_Spy0901	SSF52467	DHS-like NAD/FAD-binding domain
M28_Spy0902	SSF52949	Macro domain-like
M28_Spy0903	SSF51230	Single hybrid motif
M28_Spy0904	SSF51679	Bacterial luciferase-like
M28_Spy0905	SSF51395	FMN-linked oxidoreductases
M28_Spy0906	SSF55681	Class II aaRS and biotin synthetases
M28_Spy0907	SSF102645	CoaB-like
M28_Spy0908	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
M28_Spy0910	SSF53738	Phosphoglucomutase, first 3 domains
M28_Spy0910	SSF55957	Phosphoglucomutase, C-terminal domain
M28_Spy0913	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0914	SSF53822	Periplasmic binding protein-like I
M28_Spy0915	SSF53927	Cytidine deaminase-like
M28_Spy0916	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0917	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0918	SSF46992	Ribosomal protein S20
M28_Spy0919	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy0919	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy0920	SSF52172	CheY-like
M28_Spy0921	SSF55486	Metalloproteases ("zincins"), catalytic domain
M28_Spy0921	SSF63737	Leukotriene A4 hydrolase N-terminal domain
M28_Spy0923	SSF109755	PhoU-like
M28_Spy0924	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0925	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0926	SSF161098	MetI-like
M28_Spy0927	SSF161098	MetI-like
M28_Spy0928	SSF53850	Periplasmic binding protein-like II
M28_Spy0929	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy0930	SSF56655	Carbohydrate phosphatase
M28_Spy0931	SSF158504	BH2638-like
M28_Spy0932	SSF52833	Thioredoxin-like
M28_Spy0933	SSF52374	Nucleotidylyl transferase
M28_Spy0933	SSF82114	Riboflavin kinase-like
M28_Spy0934	SSF55120	Pseudouridine synthase
M28_Spy0937	SSF116734	DNA methylase specificity domain
M28_Spy0939	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0940	SSF46689	Homeodomain-like
M28_Spy0942	SSF116726	TrkA C-terminal domain-like
M28_Spy0942	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0944	SSF69047	Hypothetical protein YjbJ
M28_Spy0949	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0952	SSF160240	Cation efflux protein cytoplasmic domain-like
M28_Spy0952	SSF161111	Cation efflux protein transmembrane domain-like
M28_Spy0954	SSF53850	Periplasmic binding protein-like II
M28_Spy0955	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0956	SSF161098	MetI-like
M28_Spy0957	SSF57783	Zinc beta-ribbon
M28_Spy0957	SSF82057	Prokaryotic SH3-related domain
M28_Spy0958	SSF53697	SIS domain
M28_Spy0958	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
M28_Spy0959	SSF51306	LexA/Signal peptidase
M28_Spy0960	SSF50800	PK beta-barrel domain-like
M28_Spy0960	SSF51621	Phosphoenolpyruvate/pyruvate domain
M28_Spy0960	SSF52935	PK C-terminal domain-like
M28_Spy0961	SSF53784	Phosphofructokinase
M28_Spy0962	SSF89550	PHP domain-like
M28_Spy0963	SSF46785	"Winged helix" DNA-binding domain
M28_Spy0964	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy0969	SSF50203	Bacterial enterotoxins
M28_Spy0969	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy0970	SSF51445	(Trans)glycosidases
M28_Spy0975	SSF58113	Apolipoprotein A-I
M28_Spy0977	SSF69349	Phage fibre proteins
M28_Spy0995	SSF56399	ADP-ribosylation
M28_Spy0999	SSF143100	TTHA1013/TTHA0281-like
M28_Spy1004	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1011	SSF56747	Prim-pol domain
M28_Spy1014	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1020	SSF46955	Putative DNA-binding domain
M28_Spy1021	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1026	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1030	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1030	SSF51306	LexA/Signal peptidase
M28_Spy1031	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
M28_Spy1033	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1036	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
M28_Spy1037	SSF51445	(Trans)glycosidases
M28_Spy1038	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1038	SSF53822	Periplasmic binding protein-like I
M28_Spy1039	SSF53850	Periplasmic binding protein-like II
M28_Spy1040	SSF160964	MalF N-terminal region-like
M28_Spy1040	SSF161098	MetI-like
M28_Spy1041	SSF161098	MetI-like
M28_Spy1042	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1044	SSF161098	MetI-like
M28_Spy1045	SSF160964	MalF N-terminal region-like
M28_Spy1045	SSF161098	MetI-like
M28_Spy1046	SSF49452	Starch-binding domain-like
M28_Spy1046	SSF51011	Glycosyl hydrolase domain
M28_Spy1046	SSF51445	(Trans)glycosidases
M28_Spy1046	SSF81296	E set domains
M28_Spy1047	SSF51445	(Trans)glycosidases
M28_Spy1047	SSF81296	E set domains
M28_Spy1048	SSF53850	Periplasmic binding protein-like II
M28_Spy1050	SSF53474	alpha/beta-Hydrolases
M28_Spy1052	SSF47336	ACP-like
M28_Spy1054	SSF56801	Acetyl-CoA synthetase-like
M28_Spy1056	SSF46600	C-terminal UvrC-binding domain of UvrB
M28_Spy1056	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1057	SSF161098	MetI-like
M28_Spy1057	SSF53850	Periplasmic binding protein-like II
M28_Spy1058	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1061	SSF55961	Bet v1-like
M28_Spy1062	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
M28_Spy1063	SSF52794	PTS system IIB component-like
M28_Spy1064	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1064	SSF52794	PTS system IIB component-like
M28_Spy1064	SSF55804	Phoshotransferase/anion transport protein
M28_Spy1064	SSF63520	PTS-regulatory domain, PRD
M28_Spy1065	SSF50891	Cyclophilin-like
M28_Spy1065	SSF51445	(Trans)glycosidases
M28_Spy1066	SSF51445	(Trans)glycosidases
M28_Spy1069	SSF102741	Obg GTP-binding protein C-terminal domain
M28_Spy1069	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1069	SSF82051	Obg GTP-binding protein N-terminal domain
M28_Spy1071	SSF46689	Homeodomain-like
M28_Spy1072	SSF53098	Ribonuclease H-like
M28_Spy1073	SSF55120	Pseudouridine synthase
M28_Spy1073	SSF55174	Alpha-L RNA-binding motif
M28_Spy1074	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
M28_Spy1075	SSF103473	MFS general substrate transporter
M28_Spy1077	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
M28_Spy1078	SSF53167	Purine and uridine phosphorylases
M28_Spy1079	SSF53041	Resolvase-like
M28_Spy1085	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1088	SSF55961	Bet v1-like
M28_Spy1090	SSF50249	Nucleic acid-binding proteins
M28_Spy1090	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1092	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1093	SSF55205	EPT/RTPC-like
M28_Spy1095	SSF55920	Creatinase/aminopeptidase
M28_Spy1096	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1096	SSF54631	CBS-domain pair
M28_Spy1096	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
M28_Spy1096	SSF75138	HprK N-terminal domain-like
M28_Spy1097	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1099	SSF55205	EPT/RTPC-like
M28_Spy1100	SSF55973	S-adenosylmethionine synthetase
M28_Spy1101	SSF142887	PhtA domain-like
M28_Spy1101	SSF52058	L domain-like
M28_Spy1102	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1102	SSF50037	C-terminal domain of transcriptional repressors
M28_Spy1102	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1105	SSF48019	post-AAA+ oligomerization domain-like
M28_Spy1105	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1106	SSF55781	GAF domain-like
M28_Spy1109	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1110	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1111	SSF144015	Peptidoglycan deacetylase N-terminal noncatalytic region
M28_Spy1111	SSF88713	Glycoside hydrolase/deacetylase
M28_Spy1112	SSF53720	ALDH-like
M28_Spy1113	SSF47831	Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
M28_Spy1113	SSF51621	Phosphoenolpyruvate/pyruvate domain
M28_Spy1113	SSF52009	Phosphohistidine domain
M28_Spy1114	SSF55594	HPr-like
M28_Spy1115	SSF52833	Thioredoxin-like
M28_Spy1116	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
M28_Spy1116	SSF51998	PFL-like glycyl radical enzymes
M28_Spy1118	SSF47240	Ferritin-like
M28_Spy1119	SSF81340	Clc chloride channel
M28_Spy1125	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1126	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
M28_Spy1126	SSF50447	Translation proteins
M28_Spy1126	SSF55186	ThrRS/AlaRS common domain
M28_Spy1126	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1127	SSF109998	Triger factor/SurA peptide-binding domain-like
M28_Spy1127	SSF54534	FKBP-like
M28_Spy1128	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1129	SSF103473	MFS general substrate transporter
M28_Spy1130	SSF55486	Metalloproteases ("zincins"), catalytic domain
M28_Spy1132	SSF55120	Pseudouridine synthase
M28_Spy1132	SSF55174	Alpha-L RNA-binding motif
M28_Spy1133	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1134	SSF111337	QueA-like
M28_Spy1136	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1137	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1139	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
M28_Spy1139	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
M28_Spy1140	SSF48019	post-AAA+ oligomerization domain-like
M28_Spy1140	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1141	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy1143	SSF47781	RuvA domain 2-like
M28_Spy1144	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1145	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
M28_Spy1146	SSF82771	GIY-YIG endonuclease
M28_Spy1148	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1149	SSF50447	Translation proteins
M28_Spy1149	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1149	SSF54980	EF-G C-terminal domain-like
M28_Spy1151	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy1151	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy1151	SSF63418	MurE/MurF N-terminal domain
M28_Spy1152	SSF52440	PreATP-grasp domain
M28_Spy1152	SSF56059	Glutathione synthetase ATP-binding domain-like
M28_Spy1153	SSF111304	Recombination protein RecR
M28_Spy1157	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1157	SSF75500	Putative transcriptional regulator TM1602, C-terminal domain
M28_Spy1158	SSF53254	Phosphoglycerate mutase-like
M28_Spy1159	SSF51395	FMN-linked oxidoreductases
M28_Spy1161	SSF56784	HAD-like
M28_Spy1161	SSF81653	Calcium ATPase, transduction domain A
M28_Spy1161	SSF81665	Calcium ATPase, transmembrane domain M
M28_Spy1162	SSF47729	IHF-like DNA-binding proteins
M28_Spy1164	SSF52266	SGNH hydrolase
M28_Spy1165	SSF82549	DAK1/DegV-like
M28_Spy1167	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1168	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1168	SSF55252	C-terminal domain of arginine repressor
M28_Spy1169	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1169	SSF55174	Alpha-L RNA-binding motif
M28_Spy1170	SSF48576	Terpenoid synthases
M28_Spy1171	SSF116842	XseB-like
M28_Spy1173	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1173	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
M28_Spy1174	SSF53738	Phosphoglucomutase, first 3 domains
M28_Spy1174	SSF55957	Phosphoglucomutase, C-terminal domain
M28_Spy1175	SSF48173	Cryptochrome/photolyase FAD-binding domain
M28_Spy1175	SSF52425	Cryptochrome/photolyase, N-terminal domain
M28_Spy1176	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1177	SSF161098	MetI-like
M28_Spy1178	SSF143567	YkuJ-like
M28_Spy1179	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1180	SSF55811	Nudix
M28_Spy1182	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy1182	SSF50677	ValRS/IleRS/LeuRS editing domain
M28_Spy1182	SSF52374	Nucleotidylyl transferase
M28_Spy1184	SSF55174	Alpha-L RNA-binding motif
M28_Spy1187	SSF51419	PLP-binding barrel
M28_Spy1188	SSF52490	Tubulin nucleotide-binding domain-like
M28_Spy1188	SSF55307	Tubulin C-terminal domain-like
M28_Spy1189	SSF53067	Actin-like ATPase domain
M28_Spy1191	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
M28_Spy1192	SSF51984	MurCD N-terminal domain
M28_Spy1192	SSF53244	MurD-like peptide ligases, peptide-binding domain
M28_Spy1192	SSF53623	MurD-like peptide ligases, catalytic domain
M28_Spy1194	SSF50447	Translation proteins
M28_Spy1194	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1194	SSF54980	EF-G C-terminal domain-like
M28_Spy1195	SSF52821	Rhodanese/Cell cycle control phosphatase
M28_Spy1196	SSF53067	Actin-like ATPase domain
M28_Spy1197	SSF158379	YqgQ-like
M28_Spy1198	SSF47240	Ferritin-like
M28_Spy1200	SSF102114	Radical SAM enzymes
M28_Spy1203	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1203	SSF53822	Periplasmic binding protein-like I
M28_Spy1204	SSF50156	PDZ domain-like
M28_Spy1204	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy1205	SSF52374	Nucleotidylyl transferase
M28_Spy1206	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1207	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1208	SSF53633	Carbamate kinase-like
M28_Spy1209	SSF53187	Zn-dependent exopeptidases
M28_Spy1209	SSF55031	Bacterial exopeptidase dimerisation domain
M28_Spy1211	SSF53671	Aspartate/ornithine carbamoyltransferase
M28_Spy1212	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1213	SSF55909	Pentein
M28_Spy1214	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1214	SSF51206	cAMP-binding domain-like
M28_Spy1215	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1215	SSF55252	C-terminal domain of arginine repressor
M28_Spy1216	SSF56037	PheT/TilS domain
M28_Spy1217	SSF142906	YjbR-like
M28_Spy1217	SSF88697	PUA domain-like
M28_Spy1218	SSF158472	HAMP domain-like
M28_Spy1218	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1219	SSF46689	Homeodomain-like
M28_Spy1219	SSF52172	CheY-like
M28_Spy1222	SSF48619	Phospholipase A2, PLA2
M28_Spy1223	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy1226	SSF54001	Cysteine proteinases
M28_Spy1231	SSF58113	Apolipoprotein A-I
M28_Spy1233	SSF69349	Phage fibre proteins
M28_Spy1236	SSF58113	Apolipoprotein A-I
M28_Spy1244	SSF56563	Major capsid protein gp5
M28_Spy1252	SSF88697	PUA domain-like
M28_Spy1253	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1254	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1255	SSF110849	ParB/Sulfiredoxin
M28_Spy1261	SSF159006	YopX-like
M28_Spy1266	SSF103084	Holliday junction resolvase RusA
M28_Spy1268	SSF50249	Nucleic acid-binding proteins
M28_Spy1274	SSF158499	DnaD domain-like
M28_Spy1275	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1282	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1285	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1286	SSF51316	Mss4-like
M28_Spy1286	SSF55068	Peptide methionine sulfoxide reductase
M28_Spy1287	SSF52833	Thioredoxin-like
M28_Spy1289	SSF143430	TTP0101/SSO1404-like
M28_Spy1295	SSF109604	HD-domain/PDEase-like
M28_Spy1295	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1296	SSF46589	tRNA-binding arm
M28_Spy1296	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy1296	SSF50677	ValRS/IleRS/LeuRS editing domain
M28_Spy1296	SSF52374	Nucleotidylyl transferase
M28_Spy1297	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1298	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1299	SSF47794	Rad51 N-terminal domain-like
M28_Spy1300	SSF140121	SPy1572-like
M28_Spy1303	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1308	SSF54001	Cysteine proteinases
M28_Spy1311	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1319	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1321	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1322	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1328	SSF52833	Thioredoxin-like
M28_Spy1329	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1330	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1333	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
M28_Spy1337	SSF46689	Homeodomain-like
M28_Spy1338	SSF51569	Aldolase
M28_Spy1339	SSF56796	Dehydroquinate synthase-like
M28_Spy1341	SSF51182	RmlC-like cupins
M28_Spy1342	SSF51182	RmlC-like cupins
M28_Spy1343	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1344	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1344	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
M28_Spy1345	SSF49303	beta-Galactosidase/glucuronidase domain
M28_Spy1345	SSF49785	Galactose-binding domain-like
M28_Spy1345	SSF51445	(Trans)glycosidases
M28_Spy1346	SSF46689	Homeodomain-like
M28_Spy1346	SSF52172	CheY-like
M28_Spy1347	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1349	SSF53850	Periplasmic binding protein-like II
M28_Spy1350	SSF161098	MetI-like
M28_Spy1351	SSF161098	MetI-like
M28_Spy1352	SSF53067	Actin-like ATPase domain
M28_Spy1354	SSF51445	(Trans)glycosidases
M28_Spy1355	SSF51445	(Trans)glycosidases
M28_Spy1355	SSF55545	beta-N-acetylhexosaminidase-like domain
M28_Spy1356	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1356	SSF53822	Periplasmic binding protein-like I
M28_Spy1357	SSF48208	Six-hairpin glycosidases
M28_Spy1358	SSF74650	Galactose mutarotase-like
M28_Spy1358	SSF88688	Families 57/38 glycoside transferase middle domain
M28_Spy1358	SSF88713	Glycoside hydrolase/deacetylase
M28_Spy1360	SSF50249	Nucleic acid-binding proteins
M28_Spy1360	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1362	SSF159234	FomD-like
M28_Spy1366	SSF69754	Ribosome binding protein Y (YfiA homologue)
M28_Spy1367	SSF53271	PRTase-like
M28_Spy1368	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1369	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy1369	SSF54980	EF-G C-terminal domain-like
M28_Spy1370	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
M28_Spy1371	SSF50249	Nucleic acid-binding proteins
M28_Spy1372	SSF50891	Cyclophilin-like
M28_Spy1372	SSF56784	HAD-like
M28_Spy1373	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy1373	SSF52172	CheY-like
M28_Spy1374	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1376	SSF56112	Protein kinase-like (PK-like)
M28_Spy1377	SSF81606	PP2C-like
M28_Spy1378	SSF48013	NusB-like
M28_Spy1378	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1379	SSF50486	FMT C-terminal domain-like
M28_Spy1379	SSF53328	Formyltransferase
M28_Spy1380	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1381	SSF63562	RPB6/omega subunit-like
M28_Spy1382	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1383	SSF109604	HD-domain/PDEase-like
M28_Spy1383	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
M28_Spy1384	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1384	SSF53850	Periplasmic binding protein-like II
M28_Spy1385	SSF53901	Thiolase-like
M28_Spy1386	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1387	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1388	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1390	SSF63411	LuxS/MPP-like metallohydrolase
M28_Spy1392	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1394	SSF102405	MCP/YpsA-like
M28_Spy1395	SSF52980	Restriction endonuclease-like
M28_Spy1396	SSF53955	Lysozyme-like
M28_Spy1396	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1397	SSF54001	Cysteine proteinases
M28_Spy1398	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy1399	SSF51690	Nicotinate/Quinolinate PRTase C-terminal domain-like
M28_Spy1399	SSF54675	Nicotinate/Quinolinate PRTase N-terminal domain-like
M28_Spy1401	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1403	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1404	SSF161098	MetI-like
M28_Spy1406	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1408	SSF54184	Penicillin-binding protein 2x (pbp-2x), c-terminal domain
M28_Spy1408	SSF56519	Penicillin binding protein dimerisation domain
M28_Spy1408	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1410	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1410	SSF81799	Putative methyltransferase TM0872, insert domain
M28_Spy1413	SSF53720	ALDH-like
M28_Spy1414	SSF53633	Carbamate kinase-like
M28_Spy1416	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1417	SSF109797	Bacteriocin immunity protein-like
M28_Spy1418	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
M28_Spy1418	SSF52922	TK C-terminal domain-like
M28_Spy1419	SSF51569	Aldolase
M28_Spy1421	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1421	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
M28_Spy1422	SSF81338	Aquaporin-like
M28_Spy1423	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1423	SSF54373	FAD-linked reductases, C-terminal domain
M28_Spy1424	SSF53067	Actin-like ATPase domain
M28_Spy1426	SSF158221	YnzC-like
M28_Spy1427	SSF109604	HD-domain/PDEase-like
M28_Spy1428	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1430	SSF51430	NAD(P)-linked oxidoreductase
M28_Spy1431	SSF51338	Composite domain of metallo-dependent hydrolases
M28_Spy1431	SSF51556	Metallo-dependent hydrolases
M28_Spy1432	SSF109755	PhoU-like
M28_Spy1434	SSF82549	DAK1/DegV-like
M28_Spy1435	SSF46689	Homeodomain-like
M28_Spy1436	SSF56784	HAD-like
M28_Spy1438	SSF51569	Aldolase
M28_Spy1439	SSF53613	Ribokinase-like
M28_Spy1440	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
M28_Spy1441	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
M28_Spy1443	SSF52794	PTS system IIB component-like
M28_Spy1444	SSF55804	Phoshotransferase/anion transport protein
M28_Spy1445	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1445	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1447	SSF55008	HMA, heavy metal-associated domain
M28_Spy1448	SSF55008	HMA, heavy metal-associated domain
M28_Spy1448	SSF56784	HAD-like
M28_Spy1448	SSF81653	Calcium ATPase, transduction domain A
M28_Spy1448	SSF81665	Calcium ATPase, transmembrane domain M
M28_Spy1449	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1450	SSF53474	alpha/beta-Hydrolases
M28_Spy1451	SSF89919	Ribosome-binding factor A, RbfA
M28_Spy1452	SSF50447	Translation proteins
M28_Spy1452	SSF52156	Initiation factor IF2/eIF5b, domain 3
M28_Spy1452	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1453	SSF55315	L30e-like
M28_Spy1454	SSF64376	YlxR-like
M28_Spy1455	SSF50249	Nucleic acid-binding proteins
M28_Spy1455	SSF54814	Prokaryotic type KH domain (KH-domain type II)
M28_Spy1455	SSF69705	Transcription factor NusA, N-terminal domain
M28_Spy1456	SSF74942	YhbC-like, C-terminal domain
M28_Spy1456	SSF75420	YhbC-like, N-terminal domain
M28_Spy1457	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1458	SSF56112	Protein kinase-like (PK-like)
M28_Spy1460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1461	SSF54197	HIT-like
M28_Spy1464	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1465	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1467	SSF56784	HAD-like
M28_Spy1468	SSF52728	PTS IIb component
M28_Spy1468	SSF53062	PTS system fructose IIA component-like
M28_Spy1472	SSF46589	tRNA-binding arm
M28_Spy1472	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1473	SSF52096	ClpP/crotonase
M28_Spy1474	SSF52096	ClpP/crotonase
M28_Spy1475	SSF51246	Rudiment single hybrid motif
M28_Spy1475	SSF52440	PreATP-grasp domain
M28_Spy1475	SSF56059	Glutathione synthetase ATP-binding domain-like
M28_Spy1476	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
M28_Spy1477	SSF51230	Single hybrid motif
M28_Spy1478	SSF53901	Thiolase-like
M28_Spy1479	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1480	SSF52151	FabD/lysophospholipase-like
M28_Spy1480	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
M28_Spy1481	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
M28_Spy1482	SSF47336	ACP-like
M28_Spy1483	SSF53901	Thiolase-like
M28_Spy1484	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1485	SSF52096	ClpP/crotonase
M28_Spy1486	SSF46565	Chaperone J-domain
M28_Spy1486	SSF49493	HSP40/DnaJ peptide-binding domain
M28_Spy1486	SSF57938	DnaJ/Hsp40 cysteine-rich domain
M28_Spy1487	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
M28_Spy1487	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
M28_Spy1487	SSF53067	Actin-like ATPase domain
M28_Spy1488	SSF51064	Head domain of nucleotide exchange factor GrpE
M28_Spy1488	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
M28_Spy1489	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1489	SSF55781	GAF domain-like
M28_Spy1491	SSF55166	Hedgehog/DD-peptidase
M28_Spy1492	SSF53254	Phosphoglycerate mutase-like
M28_Spy1495	SSF55931	Glutamine synthetase/guanido kinase
M28_Spy1495	SSF89095	GatB/YqeY motif
M28_Spy1496	SSF75304	Amidase signature (AS) enzymes
M28_Spy1497	SSF141000	Glu-tRNAGln amidotransferase C subunit
M28_Spy1498	SSF51621	Phosphoenolpyruvate/pyruvate domain
M28_Spy1500	SSF52499	Isochorismatase-like hydrolases
M28_Spy1501	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1502	SSF53383	PLP-dependent transferases
M28_Spy1503	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy1504	SSF56784	HAD-like
M28_Spy1505	SSF53774	Glutaminase/Asparaginase
M28_Spy1508	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1509	SSF50249	Nucleic acid-binding proteins
M28_Spy1509	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1511	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1514	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1514	SSF90123	ABC transporter transmembrane region
M28_Spy1515	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1515	SSF90123	ABC transporter transmembrane region
M28_Spy1516	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1517	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
M28_Spy1518	SSF53807	"Helical backbone" metal receptor
M28_Spy1520	SSF158911	NEAT domain-like
M28_Spy1520	SSF52058	L domain-like
M28_Spy1521	SSF54001	Cysteine proteinases
M28_Spy1522	SSF50621	Alanine racemase C-terminal domain-like
M28_Spy1522	SSF51419	PLP-binding barrel
M28_Spy1523	SSF56214	4'-phosphopantetheinyl transferase
M28_Spy1524	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1524	SSF81767	Pre-protein crosslinking domain of SecA
M28_Spy1524	SSF81886	Helical scaffold and wing domains of SecA
M28_Spy1525	SSF51182	RmlC-like cupins
M28_Spy1526	SSF53067	Actin-like ATPase domain
M28_Spy1527	SSF51445	(Trans)glycosidases
M28_Spy1529	SSF51261	Duplicated hybrid motif
M28_Spy1529	SSF55604	Glucose permease domain IIB
M28_Spy1530	SSF49899	Concanavalin A-like lectins/glucanases
M28_Spy1530	SSF75005	Arabinanase/levansucrase/invertase
M28_Spy1531	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1531	SSF53822	Periplasmic binding protein-like I
M28_Spy1532	SSF48013	NusB-like
M28_Spy1534	SSF50104	Translation proteins SH3-like domain
M28_Spy1534	SSF50249	Nucleic acid-binding proteins
M28_Spy1535	SSF53927	Cytidine deaminase-like
M28_Spy1536	SSF53092	Creatinase/prolidase N-terminal domain
M28_Spy1536	SSF55920	Creatinase/aminopeptidase
M28_Spy1537	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1538	SSF143865	CorA soluble domain-like
M28_Spy1538	SSF144083	Magnesium transport protein CorA, transmembrane region
M28_Spy1540	SSF46911	Ribosomal protein S18
M28_Spy1541	SSF50249	Nucleic acid-binding proteins
M28_Spy1542	SSF54995	Ribosomal protein S6
M28_Spy1544	SSF48150	DNA-glycosylase
M28_Spy1544	SSF55811	Nudix
M28_Spy1545	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1547	SSF52833	Thioredoxin-like
M28_Spy1548	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
M28_Spy1549	SSF160443	SMR domain-like
M28_Spy1549	SSF48334	DNA repair protein MutS, domain III
M28_Spy1549	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1552	SSF53098	Ribonuclease H-like
M28_Spy1553	SSF51306	LexA/Signal peptidase
M28_Spy1554	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1556	SSF100879	Lesion bypass DNA polymerase (Y-family), little finger domain
M28_Spy1556	SSF56672	DNA/RNA polymerases
M28_Spy1557	SSF51998	PFL-like glycyl radical enzymes
M28_Spy1558	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1559	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
M28_Spy1561	SSF81338	Aquaporin-like
M28_Spy1563	SSF103473	MFS general substrate transporter
M28_Spy1564	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1564	SSF51206	cAMP-binding domain-like
M28_Spy1565	SSF49785	Galactose-binding domain-like
M28_Spy1565	SSF53474	alpha/beta-Hydrolases
M28_Spy1565	SSF81761	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
M28_Spy1566	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1567	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1568	SSF82607	YbaB-like
M28_Spy1569	SSF46955	Putative DNA-binding domain
M28_Spy1569	SSF48695	Multiheme cytochromes
M28_Spy1570	SSF53098	Ribonuclease H-like
M28_Spy1573	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1574	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1577	SSF160996	HI0933 insert domain-like
M28_Spy1577	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1578	SSF51569	Aldolase
M28_Spy1580	SSF53167	Purine and uridine phosphorylases
M28_Spy1581	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1581	SSF64288	Chorismate lyase-like
M28_Spy1582	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
M28_Spy1583	SSF53067	Actin-like ATPase domain
M28_Spy1584	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1585	SSF53067	Actin-like ATPase domain
M28_Spy1587	SSF56281	Metallo-hydrolase/oxidoreductase
M28_Spy1588	SSF54368	Glutamine synthetase, N-terminal domain
M28_Spy1588	SSF55931	Glutamine synthetase/guanido kinase
M28_Spy1589	SSF46955	Putative DNA-binding domain
M28_Spy1591	SSF53748	Phosphoglycerate kinase
M28_Spy1592	SSF56784	HAD-like
M28_Spy1593	SSF117892	Band 7/SPFH domain
M28_Spy1594	SSF101473	DhaL-like
M28_Spy1596	SSF143800	L28p-like
M28_Spy1597	SSF51569	Aldolase
M28_Spy1598	SSF53474	alpha/beta-Hydrolases
M28_Spy1599	SSF52317	Class I glutamine amidotransferase-like
M28_Spy1599	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1601	SSF102735	Trigger factor ribosome-binding domain
M28_Spy1601	SSF109998	Triger factor/SurA peptide-binding domain-like
M28_Spy1601	SSF54534	FKBP-like
M28_Spy1602	SSF50182	Sm-like ribonucleoproteins
M28_Spy1602	SSF82689	Mechanosensitive channel protein MscS (YggB), C-terminal domain
M28_Spy1602	SSF82861	Mechanosensitive channel protein MscS (YggB), transmembrane region
M28_Spy1603	SSF110710	TTHA0583/YokD-like
M28_Spy1605	SSF53613	Ribokinase-like
M28_Spy1606	SSF55120	Pseudouridine synthase
M28_Spy1609	SSF110738	Glycerate kinase I
M28_Spy1610	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1611	SSF116734	DNA methylase specificity domain
M28_Spy1612	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1615	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy1615	SSF52172	CheY-like
M28_Spy1616	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1618	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1619	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1622	SSF51445	(Trans)glycosidases
M28_Spy1623	SSF52794	PTS system IIB component-like
M28_Spy1624	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
M28_Spy1625	SSF51569	Aldolase
M28_Spy1626	SSF53613	Ribokinase-like
M28_Spy1627	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
M28_Spy1628	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
M28_Spy1629	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1629	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1632	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1633	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1634	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy1635	SSF52161	Ribosomal protein L13
M28_Spy1636	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1638	SSF82549	DAK1/DegV-like
M28_Spy1640	SSF55315	L30e-like
M28_Spy1640	SSF75217	alpha/beta knot
M28_Spy1642	SSF69065	RNase III domain-like
M28_Spy1643	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy1643	SSF52374	Nucleotidylyl transferase
M28_Spy1646	SSF51161	Trimeric LpxA-like enzymes
M28_Spy1648	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
M28_Spy1648	SSF50249	Nucleic acid-binding proteins
M28_Spy1648	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy1648	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
M28_Spy1648	SSF55666	Ribonuclease PH domain 2-like
M28_Spy1649	SSF51569	Aldolase
M28_Spy1651	SSF52794	PTS system IIB component-like
M28_Spy1652	SSF52794	PTS system IIB component-like
M28_Spy1652	SSF55804	Phoshotransferase/anion transport protein
M28_Spy1652	SSF63520	PTS-regulatory domain, PRD
M28_Spy1654	SSF47060	S15/NS1 RNA-binding domain
M28_Spy1657	SSF56420	Peptide deformylase
M28_Spy1658	SSF52218	Flavoproteins
M28_Spy1659	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1660	SSF50249	Nucleic acid-binding proteins
M28_Spy1660	SSF53098	Ribonuclease H-like
M28_Spy1660	SSF89550	PHP domain-like
M28_Spy1661	SSF52954	Class II aaRS ABD-related
M28_Spy1661	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1661	SSF55826	YbaK/ProRS associated domain
M28_Spy1662	SSF50156	PDZ domain-like
M28_Spy1664	SSF64005	Undecaprenyl diphosphate synthase
M28_Spy1666	SSF52833	Thioredoxin-like
M28_Spy1668	SSF49452	Starch-binding domain-like
M28_Spy1668	SSF51445	(Trans)glycosidases
M28_Spy1668	SSF81296	E set domains
M28_Spy1669	SSF51011	Glycosyl hydrolase domain
M28_Spy1669	SSF51445	(Trans)glycosidases
M28_Spy1670	SSF50331	MOP-like
M28_Spy1670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1671	SSF46689	Homeodomain-like
M28_Spy1672	SSF54328	Staphylokinase/streptokinase
M28_Spy1673	SSF69500	DTD-like
M28_Spy1674	SSF109604	HD-domain/PDEase-like
M28_Spy1674	SSF55021	ACT-like
M28_Spy1674	SSF81271	TGS-like
M28_Spy1674	SSF81301	Nucleotidyltransferase
M28_Spy1676	SSF52218	Flavoproteins
M28_Spy1677	SSF56219	DNase I-like
M28_Spy1678	SSF51261	Duplicated hybrid motif
M28_Spy1678	SSF55604	Glucose permease domain IIB
M28_Spy1679	SSF75217	alpha/beta knot
M28_Spy1679	SSF88697	PUA domain-like
M28_Spy1680	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
M28_Spy1682	SSF56322	ADC synthase
M28_Spy1682	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
M28_Spy1683	SSF52317	Class I glutamine amidotransferase-like
M28_Spy1684	SSF48019	post-AAA+ oligomerization domain-like
M28_Spy1684	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1685	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1686	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1687	SSF50203	Bacterial enterotoxins
M28_Spy1687	SSF54334	Superantigen toxins, C-terminal domain
M28_Spy1689	SSF53850	Periplasmic binding protein-like II
M28_Spy1690	SSF161098	MetI-like
M28_Spy1691	SSF161098	MetI-like
M28_Spy1692	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1693	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1694	SSF69047	Hypothetical protein YjbJ
M28_Spy1695	SSF142887	PhtA domain-like
M28_Spy1696	SSF53807	"Helical backbone" metal receptor
M28_Spy1700	SSF52025	PA domain
M28_Spy1700	SSF52743	Subtilisin-like
M28_Spy1707	SSF54001	Cysteine proteinases
M28_Spy1708	SSF47384	Homodimeric domain of signal transducing histidine kinase
M28_Spy1708	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1709	SSF52172	CheY-like
M28_Spy1711	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1715	SSF101094	Staphylocoagulase
M28_Spy1716	SSF53300	vWA-like
M28_Spy1718	SSF109998	Triger factor/SurA peptide-binding domain-like
M28_Spy1718	SSF54534	FKBP-like
M28_Spy1720	SSF54001	Cysteine proteinases
M28_Spy1721	SSF54001	Cysteine proteinases
M28_Spy1724	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1727	SSF101307	YutG-like
M28_Spy1728	SSF56796	Dehydroquinate synthase-like
M28_Spy1729	SSF51569	Aldolase
M28_Spy1730	SSF51998	PFL-like glycyl radical enzymes
M28_Spy1732	SSF52794	PTS system IIB component-like
M28_Spy1733	SSF46973	Enzyme IIa from lactose specific PTS, IIa-lac
M28_Spy1734	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1735	SSF100950	NagB/RpiA/CoA transferase-like
M28_Spy1735	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1736	SSF102114	Radical SAM enzymes
M28_Spy1738	SSF57829	Zn-binding ribosomal proteins
M28_Spy1739	SSF53955	Lysozyme-like
M28_Spy1739	SSF56601	beta-lactamase/transpeptidase-like
M28_Spy1740	SSF55298	YjgF-like
M28_Spy1742	SSF55120	Pseudouridine synthase
M28_Spy1746	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1747	SSF48592	GroEL equatorial domain-like
M28_Spy1747	SSF52029	GroEL apical domain-like
M28_Spy1747	SSF54849	GroEL-intermediate domain like
M28_Spy1748	SSF50129	GroES-like
M28_Spy1749	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1749	SSF81923	Double Clp-N motif
M28_Spy1751	SSF50249	Nucleic acid-binding proteins
M28_Spy1752	SSF52833	Thioredoxin-like
M28_Spy1753	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1753	SSF52833	Thioredoxin-like
M28_Spy1754	SSF51338	Composite domain of metallo-dependent hydrolases
M28_Spy1754	SSF51556	Metallo-dependent hydrolases
M28_Spy1755	SSF111326	Urocanase
M28_Spy1756	SSF55116	Formiminotransferase domain of formiminotransferase-cyclodeaminase.
M28_Spy1757	SSF101262	Methenyltetrahydrofolate cyclohydrolase-like
M28_Spy1758	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1759	SSF51182	RmlC-like cupins
M28_Spy1761	SSF48557	L-aspartase-like
M28_Spy1762	SSF52768	Arginase/deacetylase
M28_Spy1763	SSF48452	TPR-like
M28_Spy1763	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1764	SSF52313	Ribosomal protein S2
M28_Spy1765	SSF46934	UBA-like
M28_Spy1765	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
M28_Spy1766	SSF55486	Metalloproteases ("zincins"), catalytic domain
M28_Spy1767	SSF51011	Glycosyl hydrolase domain
M28_Spy1767	SSF51445	(Trans)glycosidases
M28_Spy1768	SSF51261	Duplicated hybrid motif
M28_Spy1768	SSF55604	Glucose permease domain IIB
M28_Spy1769	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1769	SSF64288	Chorismate lyase-like
M28_Spy1770	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1771	SSF54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
M28_Spy1773	SSF102114	Radical SAM enzymes
M28_Spy1774	SSF55729	Acyl-CoA N-acyltransferases (Nat)
M28_Spy1775	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1775	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
M28_Spy1777	SSF51998	PFL-like glycyl radical enzymes
M28_Spy1780	SSF53098	Ribonuclease H-like
M28_Spy1782	SSF52833	Thioredoxin-like
M28_Spy1783	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1783	SSF54752	RecA protein, C-terminal domain
M28_Spy1784	SSF142433	CinA-like
M28_Spy1784	SSF53218	Molybdenum cofactor biosynthesis proteins
M28_Spy1785	SSF48150	DNA-glycosylase
M28_Spy1786	SSF46929	DNA helicase RuvA subunit, C-terminal domain
M28_Spy1786	SSF47781	RuvA domain 2-like
M28_Spy1786	SSF50249	Nucleic acid-binding proteins
M28_Spy1787	SSF103473	MFS general substrate transporter
M28_Spy1788	SSF118116	DNA mismatch repair protein MutL
M28_Spy1788	SSF54211	Ribosomal protein S5 domain 2-like
M28_Spy1788	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
M28_Spy1789	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1791	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1791	SSF51306	LexA/Signal peptidase
M28_Spy1792	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1793	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1798	SSF47598	Ribbon-helix-helix
M28_Spy1803	SSF46955	Putative DNA-binding domain
M28_Spy1811	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
M28_Spy1814	SSF48334	DNA repair protein MutS, domain III
M28_Spy1814	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1814	SSF53150	DNA repair protein MutS, domain II
M28_Spy1814	SSF55271	DNA repair protein MutS, domain I
M28_Spy1815	SSF158622	YheA/YmcA-like
M28_Spy1816	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1816	SSF55252	C-terminal domain of arginine repressor
M28_Spy1817	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
M28_Spy1817	SSF52374	Nucleotidylyl transferase
M28_Spy1817	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
M28_Spy1818	SSF109797	Bacteriocin immunity protein-like
M28_Spy1822	SSF50249	Nucleic acid-binding proteins
M28_Spy1822	SSF55261	GAD domain-like
M28_Spy1822	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1823	SSF52954	Class II aaRS ABD-related
M28_Spy1823	SSF55681	Class II aaRS and biotin synthetases
M28_Spy1824	SSF57829	Zn-binding ribosomal proteins
M28_Spy1825	SSF57829	Zn-binding ribosomal proteins
M28_Spy1827	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1828	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1829	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1833	SSF55811	Nudix
M28_Spy1835	SSF46785	"Winged helix" DNA-binding domain
M28_Spy1839	SSF46689	Homeodomain-like
M28_Spy1840	SSF143011	RelE-like
M28_Spy1843	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
M28_Spy1846	SSF46894	C-terminal effector domain of the bipartite response regulators
M28_Spy1856	SSF46955	Putative DNA-binding domain
M28_Spy1862	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1863	SSF47413	lambda repressor-like DNA-binding domains
M28_Spy1864	SSF56349	DNA breaking-rejoining enzymes
M28_Spy1865	SSF55174	Alpha-L RNA-binding motif
M28_Spy1867	SSF48024	N-terminal domain of DnaB helicase
M28_Spy1867	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1868	SSF55653	Ribosomal protein L9 C-domain
M28_Spy1868	SSF55658	L9 N-domain-like
M28_Spy1869	SSF64182	DHH phosphoesterases
M28_Spy1870	SSF51905	FAD/NAD(P)-binding domain
M28_Spy1871	SSF55811	Nudix
M28_Spy1872	SSF52402	Adenine nucleotide alpha hydrolases-like
M28_Spy1873	SSF143548	Serine metabolism enzymes domain
M28_Spy1873	SSF55021	ACT-like
M28_Spy1875	SSF53955	Lysozyme-like
M28_Spy1877	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1878	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1881	SSF63411	LuxS/MPP-like metallohydrolase
M28_Spy1882	SSF63411	LuxS/MPP-like metallohydrolase
M28_Spy1884	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy1885	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
M28_Spy1885	SSF51735	NAD(P)-binding Rossmann-fold domains
M28_Spy1885	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
M28_Spy1886	SSF53448	Nucleotide-diphospho-sugar transferases
M28_Spy1887	SSF55174	Alpha-L RNA-binding motif
M28_Spy1888	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1889	SSF103481	Multidrug resistance efflux transporter EmrE
M28_Spy1890	SSF51412	Inosine monophosphate dehydrogenase (IMPDH)
M28_Spy1890	SSF54631	CBS-domain pair
M28_Spy1891	SSF52374	Nucleotidylyl transferase
M28_Spy1894	SSF52540	P-loop containing nucleoside triphosphate hydrolases
M28_Spy1896	SSF53098	Ribonuclease H-like
M28_Spy1897	SSF75217	alpha/beta knot
M28_Spy1898	SSF50156	PDZ domain-like
M28_Spy1898	SSF50494	Trypsin-like serine proteases
M28_Spy1899	SSF109709	KorB DNA-binding domain-like
M28_Spy1899	SSF110849	ParB/Sulfiredoxin