TPY_0008	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TPY_0009	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TPY_0010	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TPY_0010	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TPY_0011	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TPY_0020	PWY-4261	glycerol degradation I
TPY_0089	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TPY_0089	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TPY_0090	PWY-5028	L-histidine degradation II
TPY_0090	PWY-5030	L-histidine degradation III
TPY_0095	PWY-5028	L-histidine degradation II
TPY_0095	PWY-5030	L-histidine degradation III
TPY_0096	PWY-5028	L-histidine degradation II
TPY_0096	PWY-5030	L-histidine degradation III
TPY_0104	PWY-5392	reductive TCA cycle II
TPY_0104	PWY-5537	pyruvate fermentation to acetate V
TPY_0104	PWY-5538	pyruvate fermentation to acetate VI
TPY_0104	PWY-5690	TCA cycle II (plants and fungi)
TPY_0104	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_0104	PWY-6728	methylaspartate cycle
TPY_0104	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_0104	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_0106	PWY-2941	L-lysine biosynthesis II
TPY_0106	PWY-2942	L-lysine biosynthesis III
TPY_0106	PWY-5097	L-lysine biosynthesis VI
TPY_0121	PWY-6728	methylaspartate cycle
TPY_0121	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_0121	PWY-7118	chitin degradation to ethanol
TPY_0121	PWY-7294	xylose degradation IV
TPY_0121	PWY-7295	L-arabinose degradation IV
TPY_0122	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_0133	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_0141	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_0141	PWY-5109	2-methylbutanoate biosynthesis
TPY_0141	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_0141	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_0141	PWY-5177	glutaryl-CoA degradation
TPY_0141	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_0141	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_0141	PWY-6583	pyruvate fermentation to butanol I
TPY_0141	PWY-6863	pyruvate fermentation to hexanol
TPY_0141	PWY-6883	pyruvate fermentation to butanol II
TPY_0141	PWY-6944	androstenedione degradation
TPY_0141	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_0141	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_0141	PWY-7007	methyl ketone biosynthesis
TPY_0141	PWY-7046	4-coumarate degradation (anaerobic)
TPY_0141	PWY-7094	fatty acid salvage
TPY_0141	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_0141	PWY-735	jasmonic acid biosynthesis
TPY_0141	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_0142	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_0142	PWY-5109	2-methylbutanoate biosynthesis
TPY_0142	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_0142	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_0142	PWY-5177	glutaryl-CoA degradation
TPY_0142	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_0142	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_0142	PWY-6583	pyruvate fermentation to butanol I
TPY_0142	PWY-6863	pyruvate fermentation to hexanol
TPY_0142	PWY-6883	pyruvate fermentation to butanol II
TPY_0142	PWY-6944	androstenedione degradation
TPY_0142	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_0142	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_0142	PWY-7007	methyl ketone biosynthesis
TPY_0142	PWY-7046	4-coumarate degradation (anaerobic)
TPY_0142	PWY-7094	fatty acid salvage
TPY_0142	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_0142	PWY-735	jasmonic acid biosynthesis
TPY_0142	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_0147	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TPY_0147	PWY-7177	UTP and CTP dephosphorylation II
TPY_0147	PWY-7185	UTP and CTP dephosphorylation I
TPY_0154	PWY-6853	ethylene biosynthesis II (microbes)
TPY_0167	PWY-6174	mevalonate pathway II (archaea)
TPY_0167	PWY-7391	isoprene biosynthesis II (engineered)
TPY_0167	PWY-7524	mevalonate pathway III (archaea)
TPY_0167	PWY-922	mevalonate pathway I
TPY_0173	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TPY_0173	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TPY_0173	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_0173	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TPY_0173	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TPY_0173	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TPY_0183	PWY-7052	cyanophycin metabolism
TPY_0184	PWY-7052	cyanophycin metabolism
TPY_0185	PWY-7560	methylerythritol phosphate pathway II
TPY_0194	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TPY_0202	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_0212	PWY-6832	2-aminoethylphosphonate degradation II
TPY_0213	PWY-5659	GDP-mannose biosynthesis
TPY_0213	PWY-6073	alginate biosynthesis I (algal)
TPY_0213	PWY-6082	alginate biosynthesis II (bacterial)
TPY_0213	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TPY_0214	PWY-3801	sucrose degradation II (sucrose synthase)
TPY_0214	PWY-6527	stachyose degradation
TPY_0214	PWY-6981	chitin biosynthesis
TPY_0214	PWY-7238	sucrose biosynthesis II
TPY_0214	PWY-7343	UDP-glucose biosynthesis
TPY_0226	PWY-6614	tetrahydrofolate biosynthesis
TPY_0227	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TPY_0227	PWY-6148	tetrahydromethanopterin biosynthesis
TPY_0227	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TPY_0227	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TPY_0228	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TPY_0228	PWY-6148	tetrahydromethanopterin biosynthesis
TPY_0228	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TPY_0228	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TPY_0229	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_0229	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_0230	PWY-6167	flavin biosynthesis II (archaea)
TPY_0230	PWY-6168	flavin biosynthesis III (fungi)
TPY_0231	PWY-6167	flavin biosynthesis II (archaea)
TPY_0231	PWY-6168	flavin biosynthesis III (fungi)
TPY_0231	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TPY_0232	PWY-6167	flavin biosynthesis II (archaea)
TPY_0232	PWY-6168	flavin biosynthesis III (fungi)
TPY_0232	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0234	PWY-6823	molybdenum cofactor biosynthesis
TPY_0235	PWY-3961	phosphopantothenate biosynthesis II
TPY_0250	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_0250	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_0251	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_0251	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_0254	PWY-6902	chitin degradation II
TPY_0282	PWY-7560	methylerythritol phosphate pathway II
TPY_0283	PWY-7560	methylerythritol phosphate pathway II
TPY_0287	PWY-5101	L-isoleucine biosynthesis II
TPY_0287	PWY-5103	L-isoleucine biosynthesis III
TPY_0287	PWY-5104	L-isoleucine biosynthesis IV
TPY_0287	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TPY_0308	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_0308	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_0344	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0353	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
TPY_0353	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TPY_0363	PWY-6936	seleno-amino acid biosynthesis
TPY_0365	PWY-3781	aerobic respiration I (cytochrome c)
TPY_0365	PWY-4521	arsenite oxidation I (respiratory)
TPY_0365	PWY-6692	Fe(II) oxidation
TPY_0365	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TPY_0373	PWY-31	canavanine degradation
TPY_0373	PWY-4984	urea cycle
TPY_0373	PWY-6305	putrescine biosynthesis IV
TPY_0373	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TPY_0377	PWY-6823	molybdenum cofactor biosynthesis
TPY_0401	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TPY_0401	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TPY_0403	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TPY_0403	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TPY_0491	PWY-5057	L-valine degradation II
TPY_0491	PWY-5076	L-leucine degradation III
TPY_0491	PWY-5078	L-isoleucine degradation II
TPY_0491	PWY-5101	L-isoleucine biosynthesis II
TPY_0491	PWY-5103	L-isoleucine biosynthesis III
TPY_0491	PWY-5104	L-isoleucine biosynthesis IV
TPY_0491	PWY-5108	L-isoleucine biosynthesis V
TPY_0587	PWY-5839	menaquinol-7 biosynthesis
TPY_0587	PWY-5844	menaquinol-9 biosynthesis
TPY_0587	PWY-5849	menaquinol-6 biosynthesis
TPY_0587	PWY-5890	menaquinol-10 biosynthesis
TPY_0587	PWY-5891	menaquinol-11 biosynthesis
TPY_0587	PWY-5892	menaquinol-12 biosynthesis
TPY_0587	PWY-5895	menaquinol-13 biosynthesis
TPY_0600	PWY-2161	folate polyglutamylation
TPY_0631	PWY-5418	phenol degradation I (aerobic)
TPY_0633	PWY-5419	catechol degradation to 2-oxopent-4-enoate II
TPY_0633	PWY-5641	2-nitrotoluene degradation
TPY_0641	PWY-5162	2-oxopentenoate degradation
TPY_0641	PWY-5436	L-threonine degradation IV
TPY_0641	PWY-5480	pyruvate fermentation to ethanol I
TPY_0641	PWY-6587	pyruvate fermentation to ethanol III
TPY_0641	PWY-7085	triethylamine degradation
TPY_0641	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TPY_0642	PWY-5162	2-oxopentenoate degradation
TPY_0659	PWY-5381	pyridine nucleotide cycling (plants)
TPY_0659	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TPY_0666	PWY-2201	folate transformations I
TPY_0666	PWY-5497	purine nucleobases degradation II (anaerobic)
TPY_0674	PWY-5101	L-isoleucine biosynthesis II
TPY_0674	PWY-5103	L-isoleucine biosynthesis III
TPY_0674	PWY-5104	L-isoleucine biosynthesis IV
TPY_0674	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TPY_0675	PWY-6871	3-methylbutanol biosynthesis
TPY_0676	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TPY_0677	PWY-5101	L-isoleucine biosynthesis II
TPY_0677	PWY-5103	L-isoleucine biosynthesis III
TPY_0677	PWY-5104	L-isoleucine biosynthesis IV
TPY_0677	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
TPY_0677	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
TPY_0677	PWY-6389	(<i>S</i>)-acetoin biosynthesis
TPY_0677	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TPY_0678	PWY-5057	L-valine degradation II
TPY_0678	PWY-5076	L-leucine degradation III
TPY_0678	PWY-5078	L-isoleucine degradation II
TPY_0678	PWY-5101	L-isoleucine biosynthesis II
TPY_0678	PWY-5103	L-isoleucine biosynthesis III
TPY_0678	PWY-5104	L-isoleucine biosynthesis IV
TPY_0678	PWY-5108	L-isoleucine biosynthesis V
TPY_0696	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TPY_0696	PWY-7118	chitin degradation to ethanol
TPY_0716	PWY-7039	phosphatidate metabolism, as a signaling molecule
TPY_0718	PWY-6556	pyrimidine ribonucleosides salvage II
TPY_0718	PWY-7181	pyrimidine deoxyribonucleosides degradation
TPY_0718	PWY-7193	pyrimidine ribonucleosides salvage I
TPY_0718	PWY-7199	pyrimidine deoxyribonucleosides salvage
TPY_0724	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TPY_0724	PWY-6549	L-glutamine biosynthesis III
TPY_0724	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TPY_0724	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TPY_0729	PWY-5663	tetrahydrobiopterin biosynthesis I
TPY_0729	PWY-5664	tetrahydrobiopterin biosynthesis II
TPY_0729	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TPY_0729	PWY-6703	preQ<sub>0</sub> biosynthesis
TPY_0729	PWY-6983	tetrahydrobiopterin biosynthesis III
TPY_0729	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TPY_0730	PWY-6823	molybdenum cofactor biosynthesis
TPY_0737	PWY-5278	sulfite oxidation III
TPY_0737	PWY-5340	sulfate activation for sulfonation
TPY_0737	PWY-6683	sulfate reduction III (assimilatory)
TPY_0737	PWY-6932	selenate reduction
TPY_0745	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TPY_0745	PWY-2161	folate polyglutamylation
TPY_0745	PWY-2201	folate transformations I
TPY_0745	PWY-3841	folate transformations II
TPY_0764	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_0764	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_0766	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_0766	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_0767	PWY-6749	CMP-legionaminate biosynthesis I
TPY_0773	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_0774	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0778	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_0778	PWY-5723	Rubisco shunt
TPY_0778	PWY-6891	thiazole biosynthesis II (Bacillus)
TPY_0778	PWY-6892	thiazole biosynthesis I (E. coli)
TPY_0778	PWY-6901	superpathway of glucose and xylose degradation
TPY_0778	PWY-7560	methylerythritol phosphate pathway II
TPY_0779	PWY-1042	glycolysis IV (plant cytosol)
TPY_0779	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_0779	PWY-6901	superpathway of glucose and xylose degradation
TPY_0779	PWY-7003	glycerol degradation to butanol
TPY_0781	PWY-5532	adenosine nucleotides degradation IV
TPY_0781	PWY-5723	Rubisco shunt
TPY_0782	PWY-5532	adenosine nucleotides degradation IV
TPY_0782	PWY-5723	Rubisco shunt
TPY_0783	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_0783	PWY-5723	Rubisco shunt
TPY_0784	PWY-5723	Rubisco shunt
TPY_0784	PWY-7193	pyrimidine ribonucleosides salvage I
TPY_0785	PWY-1042	glycolysis IV (plant cytosol)
TPY_0785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_0785	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_0785	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_0785	PWY-7385	1,3-propanediol biosynthesis (engineered)
TPY_0786	PWY-1622	formaldehyde assimilation I (serine pathway)
TPY_0786	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TPY_0786	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_0786	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_0786	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
TPY_0786	PWY-6549	L-glutamine biosynthesis III
TPY_0786	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TPY_0786	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TPY_0786	PWY-7124	ethylene biosynthesis V (engineered)
TPY_0793	PWY-6019	pseudouridine degradation
TPY_0803	PWY-7183	pyrimidine nucleobases salvage I
TPY_0810	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0812	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0819	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TPY_0819	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
TPY_0835	PWY-5392	reductive TCA cycle II
TPY_0835	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TPY_0835	PWY-5690	TCA cycle II (plants and fungi)
TPY_0835	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_0835	PWY-6728	methylaspartate cycle
TPY_0835	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_0835	PWY-7254	TCA cycle VII (acetate-producers)
TPY_0835	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_0842	PWY-7560	methylerythritol phosphate pathway II
TPY_0877	PWY-6749	CMP-legionaminate biosynthesis I
TPY_0878	PWY-6749	CMP-legionaminate biosynthesis I
TPY_0887	PWY-381	nitrate reduction II (assimilatory)
TPY_0887	PWY-5675	nitrate reduction V (assimilatory)
TPY_0887	PWY-6549	L-glutamine biosynthesis III
TPY_0887	PWY-6963	ammonia assimilation cycle I
TPY_0887	PWY-6964	ammonia assimilation cycle II
TPY_0925	PWY-5030	L-histidine degradation III
TPY_0931	PWY-6012	acyl carrier protein metabolism I
TPY_0931	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TPY_0932	PWY-6938	NADH repair
TPY_0933	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TPY_0945	PWY-5155	&beta;-alanine biosynthesis III
TPY_0947	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TPY_0947	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TPY_0947	PWY-6896	thiamin salvage I
TPY_0947	PWY-6897	thiamin salvage II
TPY_0954	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_0954	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_0955	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TPY_0955	PWY-6596	adenosine nucleotides degradation I
TPY_0955	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0956	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_0956	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_0958	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_0958	PWY-5109	2-methylbutanoate biosynthesis
TPY_0958	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_0958	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_0958	PWY-5177	glutaryl-CoA degradation
TPY_0958	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_0958	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_0958	PWY-6583	pyruvate fermentation to butanol I
TPY_0958	PWY-6863	pyruvate fermentation to hexanol
TPY_0958	PWY-6883	pyruvate fermentation to butanol II
TPY_0958	PWY-6944	androstenedione degradation
TPY_0958	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_0958	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_0958	PWY-7007	methyl ketone biosynthesis
TPY_0958	PWY-7046	4-coumarate degradation (anaerobic)
TPY_0958	PWY-7094	fatty acid salvage
TPY_0958	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_0958	PWY-735	jasmonic acid biosynthesis
TPY_0958	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_0968	PWY-6599	guanine and guanosine salvage II
TPY_0968	PWY-6609	adenine and adenosine salvage III
TPY_0968	PWY-6610	adenine and adenosine salvage IV
TPY_0968	PWY-6620	guanine and guanosine salvage
TPY_0969	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0970	PWY-6123	inosine-5'-phosphate biosynthesis I
TPY_0970	PWY-6124	inosine-5'-phosphate biosynthesis II
TPY_0970	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_0970	PWY-7234	inosine-5'-phosphate biosynthesis III
TPY_0971	PWY-6123	inosine-5'-phosphate biosynthesis I
TPY_0971	PWY-6124	inosine-5'-phosphate biosynthesis II
TPY_0971	PWY-7234	inosine-5'-phosphate biosynthesis III
TPY_0972	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0972	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0972	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0973	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0973	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0973	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0974	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0974	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0974	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0975	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0975	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0975	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0975	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TPY_0976	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0976	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0976	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0977	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0977	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TPY_0978	PWY-6123	inosine-5'-phosphate biosynthesis I
TPY_0978	PWY-6124	inosine-5'-phosphate biosynthesis II
TPY_0978	PWY-7234	inosine-5'-phosphate biosynthesis III
TPY_0979	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TPY_0979	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TPY_0979	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TPY_0987	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TPY_1019	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TPY_1019	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_1019	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TPY_1019	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TPY_1047	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TPY_1047	PWY-6855	chitin degradation I (archaea)
TPY_1047	PWY-6906	chitin derivatives degradation
TPY_1049	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TPY_1051	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_1051	PWY-3801	sucrose degradation II (sucrose synthase)
TPY_1051	PWY-5054	sorbitol biosynthesis I
TPY_1051	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
TPY_1051	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TPY_1051	PWY-5659	GDP-mannose biosynthesis
TPY_1051	PWY-5723	Rubisco shunt
TPY_1051	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_1051	PWY-621	sucrose degradation III (sucrose invertase)
TPY_1051	PWY-622	starch biosynthesis
TPY_1051	PWY-6531	mannitol cycle
TPY_1051	PWY-6981	chitin biosynthesis
TPY_1051	PWY-7238	sucrose biosynthesis II
TPY_1051	PWY-7347	sucrose biosynthesis III
TPY_1051	PWY-7385	1,3-propanediol biosynthesis (engineered)
TPY_1052	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_1052	PWY-5723	Rubisco shunt
TPY_1052	PWY-6891	thiazole biosynthesis II (Bacillus)
TPY_1052	PWY-6892	thiazole biosynthesis I (E. coli)
TPY_1052	PWY-6901	superpathway of glucose and xylose degradation
TPY_1052	PWY-7560	methylerythritol phosphate pathway II
TPY_1054	PWY-381	nitrate reduction II (assimilatory)
TPY_1054	PWY-5675	nitrate reduction V (assimilatory)
TPY_1054	PWY-6549	L-glutamine biosynthesis III
TPY_1054	PWY-6963	ammonia assimilation cycle I
TPY_1054	PWY-6964	ammonia assimilation cycle II
TPY_1066	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TPY_1066	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TPY_1066	PWY-6268	adenosylcobalamin salvage from cobalamin
TPY_1066	PWY-6269	adenosylcobalamin salvage from cobinamide II
TPY_1069	PWY-101	photosynthesis light reactions
TPY_1069	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TPY_1072	PWY-5199	factor 420 polyglutamylation
TPY_1074	PWY-5743	3-hydroxypropanoate cycle
TPY_1074	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_1074	PWY-6728	methylaspartate cycle
TPY_1074	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_1086	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_1086	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_1089	PWY-6123	inosine-5'-phosphate biosynthesis I
TPY_1089	PWY-7234	inosine-5'-phosphate biosynthesis III
TPY_1115	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TPY_1115	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TPY_1115	PWY-6268	adenosylcobalamin salvage from cobalamin
TPY_1115	PWY-6269	adenosylcobalamin salvage from cobinamide II
TPY_1130	PWY-2941	L-lysine biosynthesis II
TPY_1130	PWY-5097	L-lysine biosynthesis VI
TPY_1143	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_1143	PWY-5723	Rubisco shunt
TPY_1149	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TPY_1150	PWY-7181	pyrimidine deoxyribonucleosides degradation
TPY_1151	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TPY_1156	PWY-5642	2,4-dinitrotoluene degradation
TPY_1156	PWY-6373	acrylate degradation
TPY_1159	PWY-5958	acridone alkaloid biosynthesis
TPY_1159	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TPY_1159	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TPY_1160	PWY-5958	acridone alkaloid biosynthesis
TPY_1160	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TPY_1160	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TPY_1166	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TPY_1166	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TPY_1166	PWY-6164	3-dehydroquinate biosynthesis I
TPY_1168	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TPY_1174	PWY-6700	queuosine biosynthesis
TPY_1187	PWY-5381	pyridine nucleotide cycling (plants)
TPY_1187	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TPY_1187	PWY-6596	adenosine nucleotides degradation I
TPY_1187	PWY-6606	guanosine nucleotides degradation II
TPY_1187	PWY-6607	guanosine nucleotides degradation I
TPY_1187	PWY-6608	guanosine nucleotides degradation III
TPY_1187	PWY-7185	UTP and CTP dephosphorylation I
TPY_1215	PWY-4381	fatty acid biosynthesis initiation I
TPY_1216	PWY-4381	fatty acid biosynthesis initiation I
TPY_1216	PWY-6799	fatty acid biosynthesis (plant mitochondria)
TPY_1216	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TPY_1217	PWY-5367	petroselinate biosynthesis
TPY_1217	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TPY_1217	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TPY_1217	PWY-5989	stearate biosynthesis II (bacteria and plants)
TPY_1217	PWY-5994	palmitate biosynthesis I (animals and fungi)
TPY_1217	PWY-6113	superpathway of mycolate biosynthesis
TPY_1217	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TPY_1217	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TPY_1217	PWY-6951	TPY_1217
TPY_1217	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
TPY_1217	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TPY_1217	PWYG-321	mycolate biosynthesis
TPY_1233	PWY-6829	tRNA methylation (yeast)
TPY_1233	PWY-7285	methylwyosine biosynthesis
TPY_1233	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TPY_1294	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_1294	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_1300	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TPY_1303	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TPY_1303	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TPY_1303	PWY-6936	seleno-amino acid biosynthesis
TPY_1303	PWY-702	L-methionine biosynthesis II
TPY_1308	PWY-5839	menaquinol-7 biosynthesis
TPY_1308	PWY-5844	menaquinol-9 biosynthesis
TPY_1308	PWY-5849	menaquinol-6 biosynthesis
TPY_1308	PWY-5890	menaquinol-10 biosynthesis
TPY_1308	PWY-5891	menaquinol-11 biosynthesis
TPY_1308	PWY-5892	menaquinol-12 biosynthesis
TPY_1308	PWY-5895	menaquinol-13 biosynthesis
TPY_1336	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_1336	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_1337	PWY-6167	flavin biosynthesis II (archaea)
TPY_1350	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TPY_1353	PWY-5694	allantoin degradation to glyoxylate I
TPY_1353	PWY-5705	allantoin degradation to glyoxylate III
TPY_1358	PWY-6610	adenine and adenosine salvage IV
TPY_1364	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1365	PWY-5194	siroheme biosynthesis
TPY_1365	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1366	PWY-6683	sulfate reduction III (assimilatory)
TPY_1369	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1370	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1372	PWY-5194	siroheme biosynthesis
TPY_1372	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1373	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1376	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TPY_1376	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TPY_1376	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TPY_1376	PWY-6269	adenosylcobalamin salvage from cobinamide II
TPY_1377	PWY-5194	siroheme biosynthesis
TPY_1377	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_1395	PWY-6906	chitin derivatives degradation
TPY_1395	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
TPY_1395	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
TPY_1396	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TPY_1396	PWY-6855	chitin degradation I (archaea)
TPY_1396	PWY-6906	chitin derivatives degradation
TPY_1420	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
TPY_1420	PWY-5739	GDP-D-perosamine biosynthesis
TPY_1420	PWY-5740	GDP-L-colitose biosynthesis
TPY_1420	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
TPY_1470	PWY-381	nitrate reduction II (assimilatory)
TPY_1470	PWY-5675	nitrate reduction V (assimilatory)
TPY_1470	PWY-6549	L-glutamine biosynthesis III
TPY_1470	PWY-6963	ammonia assimilation cycle I
TPY_1470	PWY-6964	ammonia assimilation cycle II
TPY_1478	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_1481	PWY-6823	molybdenum cofactor biosynthesis
TPY_1502	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_1502	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_1512	PWY-1042	glycolysis IV (plant cytosol)
TPY_1512	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_1512	PWY-6901	superpathway of glucose and xylose degradation
TPY_1512	PWY-7003	glycerol degradation to butanol
TPY_1513	PWY-1042	glycolysis IV (plant cytosol)
TPY_1513	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_1513	PWY-6886	1-butanol autotrophic biosynthesis
TPY_1513	PWY-6901	superpathway of glucose and xylose degradation
TPY_1513	PWY-7003	glycerol degradation to butanol
TPY_1514	PWY-1042	glycolysis IV (plant cytosol)
TPY_1514	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_1514	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_1514	PWY-7003	glycerol degradation to butanol
TPY_1515	PWY-1042	glycolysis IV (plant cytosol)
TPY_1515	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TPY_1515	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_1515	PWY-5723	Rubisco shunt
TPY_1515	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_1515	PWY-6886	1-butanol autotrophic biosynthesis
TPY_1515	PWY-6901	superpathway of glucose and xylose degradation
TPY_1515	PWY-7003	glycerol degradation to butanol
TPY_1515	PWY-7124	ethylene biosynthesis V (engineered)
TPY_1515	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TPY_1516	PWY-1042	glycolysis IV (plant cytosol)
TPY_1516	PWY-1622	formaldehyde assimilation I (serine pathway)
TPY_1516	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TPY_1516	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_1516	PWY-5723	Rubisco shunt
TPY_1516	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_1516	PWY-6886	1-butanol autotrophic biosynthesis
TPY_1516	PWY-6901	superpathway of glucose and xylose degradation
TPY_1516	PWY-7003	glycerol degradation to butanol
TPY_1516	PWY-7124	ethylene biosynthesis V (engineered)
TPY_1516	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TPY_1526	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TPY_1556	PWY-7205	CMP phosphorylation
TPY_1557	PWY-3461	L-tyrosine biosynthesis II
TPY_1557	PWY-3462	L-phenylalanine biosynthesis II
TPY_1557	PWY-6120	L-tyrosine biosynthesis III
TPY_1557	PWY-6627	salinosporamide A biosynthesis
TPY_1576	PWY-2941	L-lysine biosynthesis II
TPY_1576	PWY-2942	L-lysine biosynthesis III
TPY_1576	PWY-5097	L-lysine biosynthesis VI
TPY_1588	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_1588	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_1594	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_1594	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_1608	PWY-5350	thiosulfate disproportionation III (rhodanese)
TPY_1609	PWY-6348	phosphate acquisition
TPY_1609	PWY-6357	phosphate utilization in cell wall regeneration
TPY_1609	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TPY_1609	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TPY_1624	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TPY_1625	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TPY_1641	PWY-2781	<i>cis</i>-zeatin biosynthesis
TPY_1645	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_1645	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_1651	PWY-5988	wound-induced proteolysis I
TPY_1651	PWY-6018	seed germination protein turnover
TPY_1652	PWY-7533	gliotoxin biosynthesis
TPY_1664	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_1664	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_1671	PWY-5155	&beta;-alanine biosynthesis III
TPY_1684	PWY-2941	L-lysine biosynthesis II
TPY_1684	PWY-2942	L-lysine biosynthesis III
TPY_1684	PWY-5097	L-lysine biosynthesis VI
TPY_1684	PWY-6559	spermidine biosynthesis II
TPY_1684	PWY-6562	norspermidine biosynthesis
TPY_1684	PWY-7153	grixazone biosynthesis
TPY_1685	PWY-2941	L-lysine biosynthesis II
TPY_1685	PWY-2942	L-lysine biosynthesis III
TPY_1685	PWY-5097	L-lysine biosynthesis VI
TPY_1685	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_1685	PWY-6559	spermidine biosynthesis II
TPY_1685	PWY-6562	norspermidine biosynthesis
TPY_1685	PWY-7153	grixazone biosynthesis
TPY_1685	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_1697	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TPY_1697	PWY-6167	flavin biosynthesis II (archaea)
TPY_1697	PWY-6168	flavin biosynthesis III (fungi)
TPY_1709	PWY-7560	methylerythritol phosphate pathway II
TPY_1711	PWY-7560	methylerythritol phosphate pathway II
TPY_1732	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TPY_1732	PWY-2161	folate polyglutamylation
TPY_1732	PWY-2201	folate transformations I
TPY_1732	PWY-3841	folate transformations II
TPY_1746	PWY-5381	pyridine nucleotide cycling (plants)
TPY_1746	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TPY_1746	PWY-6596	adenosine nucleotides degradation I
TPY_1746	PWY-6606	guanosine nucleotides degradation II
TPY_1746	PWY-6607	guanosine nucleotides degradation I
TPY_1746	PWY-6608	guanosine nucleotides degradation III
TPY_1746	PWY-7185	UTP and CTP dephosphorylation I
TPY_1756	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TPY_1759	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TPY_1759	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TPY_1759	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TPY_1759	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_1759	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TPY_1759	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TPY_1759	PWY-7205	CMP phosphorylation
TPY_1759	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TPY_1759	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_1759	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TPY_1759	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_1759	PWY-7224	purine deoxyribonucleosides salvage
TPY_1759	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TPY_1759	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TPY_1760	PWY-6834	spermidine biosynthesis III
TPY_1795	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TPY_1799	PWY-6825	phosphatidylcholine biosynthesis V
TPY_1805	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TPY_1805	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TPY_1805	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TPY_1805	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TPY_1805	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_1805	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_1805	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TPY_1805	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TPY_1812	PWY-5941	glycogen degradation II (eukaryotic)
TPY_1812	PWY-6724	starch degradation II
TPY_1812	PWY-6737	starch degradation V
TPY_1812	PWY-7238	sucrose biosynthesis II
TPY_1821	PWY-6807	xyloglucan degradation II (exoglucanase)
TPY_1908	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_1912	PWY-4261	glycerol degradation I
TPY_1918	PWY-3821	galactose degradation III
TPY_1918	PWY-6317	galactose degradation I (Leloir pathway)
TPY_1918	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
TPY_1918	PWY-6527	stachyose degradation
TPY_1918	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
TPY_1918	PWY-7344	UDP-D-galactose biosynthesis
TPY_1919	PWY-3821	galactose degradation III
TPY_1919	PWY-6317	galactose degradation I (Leloir pathway)
TPY_1919	PWY-6527	stachyose degradation
TPY_1920	PWY-6317	galactose degradation I (Leloir pathway)
TPY_1920	PWY-6527	stachyose degradation
TPY_1923	PWY-4261	glycerol degradation I
TPY_1929	PWY-3121	linamarin degradation
TPY_1929	PWY-5176	coumarin biosynthesis (via 2-coumarate)
TPY_1929	PWY-6002	lotaustralin degradation
TPY_1929	PWY-6788	cellulose degradation II (fungi)
TPY_1929	PWY-7089	taxiphyllin bioactivation
TPY_1929	PWY-7091	linustatin bioactivation
TPY_1929	PWY-7092	neolinustatin bioactivation
TPY_1971	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TPY_1974	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TPY_1974	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TPY_1974	PWY-7242	D-fructuronate degradation
TPY_1974	PWY-7310	D-glucosaminate degradation
TPY_2001	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_2008	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TPY_2018	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_2024	PWY-4261	glycerol degradation I
TPY_2081	PWY-6012	acyl carrier protein metabolism I
TPY_2081	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TPY_2093	PWY-6825	phosphatidylcholine biosynthesis V
TPY_2134	PWY-1001	cellulose biosynthesis
TPY_2169	PWY-5303	thiosulfate oxidation II (via tetrathionate)
TPY_2170	PWY-5303	thiosulfate oxidation II (via tetrathionate)
TPY_2203	PWY-6167	flavin biosynthesis II (archaea)
TPY_2203	PWY-6168	flavin biosynthesis III (fungi)
TPY_2218	PWY-5372	carbon tetrachloride degradation II
TPY_2218	PWY-6780	hydrogen production VI
TPY_2301	PWY-5194	siroheme biosynthesis
TPY_2301	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_2302	PWY-5194	siroheme biosynthesis
TPY_2302	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TPY_2303	PWY-5278	sulfite oxidation III
TPY_2303	PWY-5340	sulfate activation for sulfonation
TPY_2303	PWY-6683	sulfate reduction III (assimilatory)
TPY_2303	PWY-6932	selenate reduction
TPY_2305	PWY-6683	sulfate reduction III (assimilatory)
TPY_2391	PWY-5101	L-isoleucine biosynthesis II
TPY_2391	PWY-6871	3-methylbutanol biosynthesis
TPY_2398	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TPY_2417	PWY-5155	&beta;-alanine biosynthesis III
TPY_2419	PWY-7310	D-glucosaminate degradation
TPY_2420	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
TPY_2420	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
TPY_2425	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TPY_2440	PWY-5663	tetrahydrobiopterin biosynthesis I
TPY_2440	PWY-5664	tetrahydrobiopterin biosynthesis II
TPY_2440	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TPY_2440	PWY-6703	preQ<sub>0</sub> biosynthesis
TPY_2440	PWY-6983	tetrahydrobiopterin biosynthesis III
TPY_2440	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TPY_2448	PWY-5350	thiosulfate disproportionation III (rhodanese)
TPY_2452	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TPY_2453	PWY-723	alkylnitronates degradation
TPY_2462	PWY-7431	aromatic biogenic amine degradation (bacteria)
TPY_2465	PWY-2941	L-lysine biosynthesis II
TPY_2465	PWY-2942	L-lysine biosynthesis III
TPY_2465	PWY-5097	L-lysine biosynthesis VI
TPY_2504	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TPY_2504	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TPY_2504	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TPY_2531	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
TPY_2531	PWY-5739	GDP-D-perosamine biosynthesis
TPY_2531	PWY-5740	GDP-L-colitose biosynthesis
TPY_2531	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
TPY_2533	PWY-5941	glycogen degradation II (eukaryotic)
TPY_2533	PWY-6724	starch degradation II
TPY_2533	PWY-6737	starch degradation V
TPY_2533	PWY-7238	sucrose biosynthesis II
TPY_2539	PWY-5532	adenosine nucleotides degradation IV
TPY_2539	PWY-5723	Rubisco shunt
TPY_2541	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TPY_2542	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TPY_2542	PWY-5389	3-methylthiopropanoate biosynthesis
TPY_2612	PWY-4381	fatty acid biosynthesis initiation I
TPY_2612	PWY-5743	3-hydroxypropanoate cycle
TPY_2612	PWY-5744	glyoxylate assimilation
TPY_2612	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_2612	PWY-6679	jadomycin biosynthesis
TPY_2612	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TPY_2616	PWY-6654	phosphopantothenate biosynthesis III
TPY_2617	PWY-6654	phosphopantothenate biosynthesis III
TPY_2783	PWY-6936	seleno-amino acid biosynthesis
TPY_2788	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TPY_2788	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TPY_2788	PWY-6269	adenosylcobalamin salvage from cobinamide II
TPY_2791	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TPY_2791	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TPY_2791	PWY-6269	adenosylcobalamin salvage from cobinamide II
TPY_2799	PWY-5344	L-homocysteine biosynthesis
TPY_2800	PWY-3341	L-proline biosynthesis III
TPY_2800	PWY-4981	L-proline biosynthesis II (from arginine)
TPY_2800	PWY-6344	L-ornithine degradation II (Stickland reaction)
TPY_2810	PWY-6854	ethylene biosynthesis III (microbes)
TPY_2823	PWY-6936	seleno-amino acid biosynthesis
TPY_2823	PWY-7274	D-cycloserine biosynthesis
TPY_2826	PWY-6785	hydrogen production VIII
TPY_2830	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_2830	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_2839	PWY-5147	oleate biosynthesis I (plants)
TPY_2841	PWY-5663	tetrahydrobiopterin biosynthesis I
TPY_2841	PWY-5664	tetrahydrobiopterin biosynthesis II
TPY_2841	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TPY_2841	PWY-6703	preQ<sub>0</sub> biosynthesis
TPY_2841	PWY-6983	tetrahydrobiopterin biosynthesis III
TPY_2841	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TPY_2843	PWY-7199	pyrimidine deoxyribonucleosides salvage
TPY_2849	PWY-5958	acridone alkaloid biosynthesis
TPY_2849	PWY-6543	4-aminobenzoate biosynthesis
TPY_2849	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TPY_2849	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TPY_2849	PWY-6722	candicidin biosynthesis
TPY_2852	PWY-7533	gliotoxin biosynthesis
TPY_2877	PWY-5704	urea degradation II
TPY_2878	PWY-5704	urea degradation II
TPY_2879	PWY-5704	urea degradation II
TPY_2884	PWY-5169	cyanurate degradation
TPY_2884	PWY-5703	urea degradation I
TPY_2937	PWY-2201	folate transformations I
TPY_2937	PWY-3841	folate transformations II
TPY_2938	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TPY_2938	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TPY_2938	PWY-6936	seleno-amino acid biosynthesis
TPY_2938	PWY-702	L-methionine biosynthesis II
TPY_2939	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TPY_2939	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TPY_2939	PWY-6936	seleno-amino acid biosynthesis
TPY_2939	PWY-702	L-methionine biosynthesis II
TPY_2941	PWY-702	L-methionine biosynthesis II
TPY_2942	PWY-2941	L-lysine biosynthesis II
TPY_2942	PWY-2942	L-lysine biosynthesis III
TPY_2942	PWY-5097	L-lysine biosynthesis VI
TPY_2942	PWY-6559	spermidine biosynthesis II
TPY_2942	PWY-6562	norspermidine biosynthesis
TPY_2942	PWY-7153	grixazone biosynthesis
TPY_2944	PWY-6832	2-aminoethylphosphonate degradation II
TPY_2954	PWY-4261	glycerol degradation I
TPY_2960	PWY-4261	glycerol degradation I
TPY_2960	PWY-6118	glycerol-3-phosphate shuttle
TPY_2960	PWY-6952	glycerophosphodiester degradation
TPY_2962	PWY-6902	chitin degradation II
TPY_2990	PWY-40	putrescine biosynthesis I
TPY_2990	PWY-6305	putrescine biosynthesis IV
TPY_3008	PWY-3781	aerobic respiration I (cytochrome c)
TPY_3008	PWY-4521	arsenite oxidation I (respiratory)
TPY_3008	PWY-6692	Fe(II) oxidation
TPY_3008	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TPY_3037	PWY-4981	L-proline biosynthesis II (from arginine)
TPY_3037	PWY-4984	urea cycle
TPY_3037	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_3038	PWY-4983	L-citrulline-nitric oxide cycle
TPY_3038	PWY-4984	urea cycle
TPY_3038	PWY-5	canavanine biosynthesis
TPY_3038	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_3038	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_3039	PWY-4983	L-citrulline-nitric oxide cycle
TPY_3039	PWY-4984	urea cycle
TPY_3039	PWY-5	canavanine biosynthesis
TPY_3039	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_3039	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_3056	PWY-1881	formate oxidation to CO<sub>2</sub>
TPY_3056	PWY-5497	purine nucleobases degradation II (anaerobic)
TPY_3056	PWY-6696	oxalate degradation III
TPY_3231	PWY-3781	aerobic respiration I (cytochrome c)
TPY_3231	PWY-4521	arsenite oxidation I (respiratory)
TPY_3231	PWY-6692	Fe(II) oxidation
TPY_3231	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TPY_3236	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TPY_3236	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TPY_3250	PWY-5057	L-valine degradation II
TPY_3250	PWY-5076	L-leucine degradation III
TPY_3250	PWY-5078	L-isoleucine degradation II
TPY_3250	PWY-5101	L-isoleucine biosynthesis II
TPY_3250	PWY-5103	L-isoleucine biosynthesis III
TPY_3250	PWY-5104	L-isoleucine biosynthesis IV
TPY_3250	PWY-5108	L-isoleucine biosynthesis V
TPY_3256	PWY-5344	L-homocysteine biosynthesis
TPY_3256	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TPY_3263	PWY-101	photosynthesis light reactions
TPY_3263	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TPY_3273	PWY-5901	2,3-dihydroxybenzoate biosynthesis
TPY_3277	PWY-1341	phenylacetate degradation II (anaerobic)
TPY_3277	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
TPY_3285	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_3285	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TPY_3285	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TPY_3285	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_3287	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TPY_3287	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TPY_3287	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TPY_3289	PWY-6891	thiazole biosynthesis II (Bacillus)
TPY_3289	PWY-6892	thiazole biosynthesis I (E. coli)
TPY_3289	PWY-7560	methylerythritol phosphate pathway II
TPY_3293	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TPY_3293	PWY-2201	folate transformations I
TPY_3293	PWY-3841	folate transformations II
TPY_3293	PWY-5030	L-histidine degradation III
TPY_3293	PWY-5497	purine nucleobases degradation II (anaerobic)
TPY_3293	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TPY_3310	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TPY_3310	PWY-6416	quinate degradation II
TPY_3310	PWY-6707	gallate biosynthesis
TPY_3311	PWY-1622	formaldehyde assimilation I (serine pathway)
TPY_3311	PWY-181	photorespiration
TPY_3311	PWY-2161	folate polyglutamylation
TPY_3311	PWY-2201	folate transformations I
TPY_3311	PWY-3661	glycine betaine degradation I
TPY_3311	PWY-3661-1	glycine betaine degradation II (mammalian)
TPY_3311	PWY-3841	folate transformations II
TPY_3311	PWY-5497	purine nucleobases degradation II (anaerobic)
TPY_3312	PWY-6164	3-dehydroquinate biosynthesis I
TPY_3313	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TPY_3314	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TPY_3315	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TPY_3316	PWY-5269	cardiolipin biosynthesis II
TPY_3316	PWY-5668	cardiolipin biosynthesis I
TPY_3319	PWY-6823	molybdenum cofactor biosynthesis
TPY_3319	PWY-6891	thiazole biosynthesis II (Bacillus)
TPY_3319	PWY-6892	thiazole biosynthesis I (E. coli)
TPY_3319	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TPY_3335	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TPY_3336	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TPY_3338	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TPY_3338	PWY-6578	8-amino-7-oxononanoate biosynthesis III
TPY_3338	PWY-7147	8-amino-7-oxononanoate biosynthesis II
TPY_3361	PWY-3781	aerobic respiration I (cytochrome c)
TPY_3361	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TPY_3361	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TPY_3361	PWY-5690	TCA cycle II (plants and fungi)
TPY_3361	PWY-6728	methylaspartate cycle
TPY_3361	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_3361	PWY-7254	TCA cycle VII (acetate-producers)
TPY_3361	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TPY_3373	PWY-6605	adenine and adenosine salvage II
TPY_3373	PWY-6610	adenine and adenosine salvage IV
TPY_3385	PWY-3221	dTDP-L-rhamnose biosynthesis II
TPY_3385	PWY-6808	dTDP-D-forosamine biosynthesis
TPY_3385	PWY-6942	dTDP-D-desosamine biosynthesis
TPY_3385	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TPY_3385	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TPY_3385	PWY-6974	dTDP-L-olivose biosynthesis
TPY_3385	PWY-6976	dTDP-L-mycarose biosynthesis
TPY_3385	PWY-7104	dTDP-L-megosamine biosynthesis
TPY_3385	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TPY_3385	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TPY_3385	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TPY_3385	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TPY_3385	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TPY_3385	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TPY_3385	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TPY_3385	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TPY_3391	PWY-2941	L-lysine biosynthesis II
TPY_3391	PWY-2942	L-lysine biosynthesis III
TPY_3391	PWY-5097	L-lysine biosynthesis VI
TPY_3407	PWY-5316	nicotine biosynthesis
TPY_3407	PWY-7342	superpathway of nicotine biosynthesis
TPY_3409	PWY-5316	nicotine biosynthesis
TPY_3409	PWY-5381	pyridine nucleotide cycling (plants)
TPY_3409	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TPY_3409	PWY-7342	superpathway of nicotine biosynthesis
TPY_3410	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TPY_3410	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TPY_3424	PWY-1042	glycolysis IV (plant cytosol)
TPY_3424	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TPY_3424	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_3424	PWY-5723	Rubisco shunt
TPY_3424	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TPY_3424	PWY-6886	1-butanol autotrophic biosynthesis
TPY_3424	PWY-6901	superpathway of glucose and xylose degradation
TPY_3424	PWY-7003	glycerol degradation to butanol
TPY_3424	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TPY_3424	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TPY_3430	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_3430	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_3432	PWY-6167	flavin biosynthesis II (archaea)
TPY_3441	PWY-5686	UMP biosynthesis
TPY_3442	PWY-5686	UMP biosynthesis
TPY_3445	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_3445	PWY-5686	UMP biosynthesis
TPY_3445	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_3446	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TPY_3446	PWY-5686	UMP biosynthesis
TPY_3446	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TPY_3447	PWY-5686	UMP biosynthesis
TPY_3448	PWY-5686	UMP biosynthesis
TPY_3449	PWY-7183	pyrimidine nucleobases salvage I
TPY_3459	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TPY_3473	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_3473	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_3474	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_3474	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_3475	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_3475	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TPY_3475	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TPY_3475	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_3477	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_3477	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TPY_3477	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_3478	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TPY_3478	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TPY_3492	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TPY_3494	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TPY_3501	PWY-4381	fatty acid biosynthesis initiation I
TPY_3501	PWY-5743	3-hydroxypropanoate cycle
TPY_3501	PWY-5744	glyoxylate assimilation
TPY_3501	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3501	PWY-6679	jadomycin biosynthesis
TPY_3501	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TPY_3502	PWY-5743	3-hydroxypropanoate cycle
TPY_3502	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3502	PWY-6728	methylaspartate cycle
TPY_3502	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_3503	PWY-5743	3-hydroxypropanoate cycle
TPY_3503	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3503	PWY-6728	methylaspartate cycle
TPY_3503	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_3512	PWY-5381	pyridine nucleotide cycling (plants)
TPY_3512	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TPY_3524	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_3524	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_3551	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_3551	PWY-5109	2-methylbutanoate biosynthesis
TPY_3551	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_3551	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_3551	PWY-5177	glutaryl-CoA degradation
TPY_3551	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3551	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_3551	PWY-6583	pyruvate fermentation to butanol I
TPY_3551	PWY-6863	pyruvate fermentation to hexanol
TPY_3551	PWY-6883	pyruvate fermentation to butanol II
TPY_3551	PWY-6944	androstenedione degradation
TPY_3551	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_3551	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_3551	PWY-7007	methyl ketone biosynthesis
TPY_3551	PWY-7046	4-coumarate degradation (anaerobic)
TPY_3551	PWY-7094	fatty acid salvage
TPY_3551	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_3551	PWY-735	jasmonic acid biosynthesis
TPY_3551	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_3552	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TPY_3552	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TPY_3552	PWY-5989	stearate biosynthesis II (bacteria and plants)
TPY_3552	PWY-6113	superpathway of mycolate biosynthesis
TPY_3552	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TPY_3552	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TPY_3552	PWY-7096	triclosan resistance
TPY_3552	PWYG-321	mycolate biosynthesis
TPY_3560	PWY-1881	formate oxidation to CO<sub>2</sub>
TPY_3560	PWY-5497	purine nucleobases degradation II (anaerobic)
TPY_3560	PWY-6696	oxalate degradation III
TPY_3577	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_3577	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TPY_3578	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_3578	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TPY_3579	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_3579	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TPY_3581	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TPY_3582	PWY-5392	reductive TCA cycle II
TPY_3582	PWY-5537	pyruvate fermentation to acetate V
TPY_3582	PWY-5538	pyruvate fermentation to acetate VI
TPY_3582	PWY-5690	TCA cycle II (plants and fungi)
TPY_3582	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_3582	PWY-6728	methylaspartate cycle
TPY_3582	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_3582	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_3583	PWY-5392	reductive TCA cycle II
TPY_3583	PWY-5537	pyruvate fermentation to acetate V
TPY_3583	PWY-5538	pyruvate fermentation to acetate VI
TPY_3583	PWY-5690	TCA cycle II (plants and fungi)
TPY_3583	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_3583	PWY-6728	methylaspartate cycle
TPY_3583	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_3583	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TPY_3585	PWY-1622	formaldehyde assimilation I (serine pathway)
TPY_3585	PWY-5392	reductive TCA cycle II
TPY_3585	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TPY_3585	PWY-5690	TCA cycle II (plants and fungi)
TPY_3585	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_3585	PWY-6728	methylaspartate cycle
TPY_3585	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_3585	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TPY_3585	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TPY_3586	PWY-5913	TCA cycle VI (obligate autotrophs)
TPY_3586	PWY-6549	L-glutamine biosynthesis III
TPY_3586	PWY-6728	methylaspartate cycle
TPY_3586	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TPY_3586	PWY-7124	ethylene biosynthesis V (engineered)
TPY_3586	PWY-7254	TCA cycle VII (acetate-producers)
TPY_3586	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TPY_3607	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TPY_3607	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TPY_3607	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TPY_3607	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TPY_3616	PWY-6891	thiazole biosynthesis II (Bacillus)
TPY_3616	PWY-6892	thiazole biosynthesis I (E. coli)
TPY_3618	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TPY_3618	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TPY_3618	PWY-6897	thiamin salvage II
TPY_3618	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TPY_3618	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TPY_3618	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TPY_3618	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TPY_3619	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
TPY_3620	PWY-6899	base-degraded thiamin salvage
TPY_3620	PWY-7356	thiamin salvage IV (yeast)
TPY_3621	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TPY_3621	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TPY_3621	PWY-6897	thiamin salvage II
TPY_3621	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TPY_3621	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TPY_3621	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TPY_3621	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TPY_3622	PWY-6910	hydroxymethylpyrimidine salvage
TPY_3622	PWY-7356	thiamin salvage IV (yeast)
TPY_3622	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TPY_3624	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
TPY_3626	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_3626	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_3626	PWY-5901	2,3-dihydroxybenzoate biosynthesis
TPY_3626	PWY-6406	salicylate biosynthesis I
TPY_3627	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_3627	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_3628	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_3628	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_3629	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_3629	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_3630	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TPY_3630	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TPY_3631	PWY-5839	menaquinol-7 biosynthesis
TPY_3631	PWY-5851	demethylmenaquinol-9 biosynthesis
TPY_3631	PWY-5852	demethylmenaquinol-8 biosynthesis I
TPY_3631	PWY-5853	demethylmenaquinol-6 biosynthesis I
TPY_3631	PWY-5890	menaquinol-10 biosynthesis
TPY_3631	PWY-5891	menaquinol-11 biosynthesis
TPY_3631	PWY-5892	menaquinol-12 biosynthesis
TPY_3631	PWY-5895	menaquinol-13 biosynthesis
TPY_3645	PWY-1042	glycolysis IV (plant cytosol)
TPY_3645	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TPY_3645	PWY-5484	glycolysis II (from fructose 6-phosphate)
TPY_3645	PWY-7385	1,3-propanediol biosynthesis (engineered)
TPY_3652	PWY-6523	nitrite-dependent anaerobic methane oxidation
TPY_3652	PWY-6748	nitrate reduction VII (denitrification)
TPY_3652	PWY-7084	nitrifier denitrification
TPY_3657	PWY-7560	methylerythritol phosphate pathway II
TPY_3671	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
TPY_3684	PWY-5443	aminopropanol phosphate biosynthesis I
TPY_3761	PWY-4381	fatty acid biosynthesis initiation I
TPY_3771	PWY-40	putrescine biosynthesis I
TPY_3771	PWY-6305	putrescine biosynthesis IV
TPY_3773	PWY-40	putrescine biosynthesis I
TPY_3773	PWY-43	putrescine biosynthesis II
TPY_3773	PWY-6305	putrescine biosynthesis IV
TPY_3773	PWY-6834	spermidine biosynthesis III
TPY_3784	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_3784	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_3785	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TPY_3785	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TPY_3785	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TPY_3790	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TPY_3790	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TPY_3791	PWY-4041	&gamma;-glutamyl cycle
TPY_3791	PWY-5826	hypoglycin biosynthesis
TPY_3799	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_3799	PWY-5109	2-methylbutanoate biosynthesis
TPY_3799	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_3799	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_3799	PWY-5177	glutaryl-CoA degradation
TPY_3799	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3799	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_3799	PWY-6583	pyruvate fermentation to butanol I
TPY_3799	PWY-6863	pyruvate fermentation to hexanol
TPY_3799	PWY-6883	pyruvate fermentation to butanol II
TPY_3799	PWY-6944	androstenedione degradation
TPY_3799	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_3799	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_3799	PWY-7007	methyl ketone biosynthesis
TPY_3799	PWY-7046	4-coumarate degradation (anaerobic)
TPY_3799	PWY-7094	fatty acid salvage
TPY_3799	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_3799	PWY-735	jasmonic acid biosynthesis
TPY_3799	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_3800	PWY-1361	benzoyl-CoA degradation I (aerobic)
TPY_3800	PWY-5109	2-methylbutanoate biosynthesis
TPY_3800	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TPY_3800	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TPY_3800	PWY-5177	glutaryl-CoA degradation
TPY_3800	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TPY_3800	PWY-6435	4-hydroxybenzoate biosynthesis V
TPY_3800	PWY-6583	pyruvate fermentation to butanol I
TPY_3800	PWY-6863	pyruvate fermentation to hexanol
TPY_3800	PWY-6883	pyruvate fermentation to butanol II
TPY_3800	PWY-6944	androstenedione degradation
TPY_3800	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TPY_3800	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TPY_3800	PWY-7007	methyl ketone biosynthesis
TPY_3800	PWY-7046	4-coumarate degradation (anaerobic)
TPY_3800	PWY-7094	fatty acid salvage
TPY_3800	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TPY_3800	PWY-735	jasmonic acid biosynthesis
TPY_3800	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TPY_3808	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
