SYO3AOP1_0004	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_0005	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
SYO3AOP1_0005	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
SYO3AOP1_0005	PWY-6897	thiamin salvage II
SYO3AOP1_0005	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
SYO3AOP1_0005	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
SYO3AOP1_0005	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
SYO3AOP1_0005	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
SYO3AOP1_0023	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_0028	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_0028	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_0028	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_0031	PWY-1881	formate oxidation to CO<sub>2</sub>
SYO3AOP1_0031	PWY-5497	purine nucleobases degradation II (anaerobic)
SYO3AOP1_0031	PWY-6696	oxalate degradation III
SYO3AOP1_0032	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_0032	PWY-2942	L-lysine biosynthesis III
SYO3AOP1_0032	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_0038	PWY-5988	wound-induced proteolysis I
SYO3AOP1_0038	PWY-6018	seed germination protein turnover
SYO3AOP1_0048	PWY-6683	sulfate reduction III (assimilatory)
SYO3AOP1_0049	PWY-5194	siroheme biosynthesis
SYO3AOP1_0049	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
SYO3AOP1_0051	PWY-5194	siroheme biosynthesis
SYO3AOP1_0051	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
SYO3AOP1_0052	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_0052	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SYO3AOP1_0069	PWY-6829	tRNA methylation (yeast)
SYO3AOP1_0074	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SYO3AOP1_0074	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SYO3AOP1_0074	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0074	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0074	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SYO3AOP1_0074	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SYO3AOP1_0074	PWY-7205	CMP phosphorylation
SYO3AOP1_0074	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SYO3AOP1_0074	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0074	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0074	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0074	PWY-7224	purine deoxyribonucleosides salvage
SYO3AOP1_0074	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0074	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0085	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
SYO3AOP1_0085	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
SYO3AOP1_0085	PWY-6896	thiamin salvage I
SYO3AOP1_0085	PWY-6897	thiamin salvage II
SYO3AOP1_0095	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
SYO3AOP1_0095	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
SYO3AOP1_0111	PWY-6614	tetrahydrofolate biosynthesis
SYO3AOP1_0118	PWY-6829	tRNA methylation (yeast)
SYO3AOP1_0118	PWY-7285	methylwyosine biosynthesis
SYO3AOP1_0118	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
SYO3AOP1_0123	PWY-4983	L-citrulline-nitric oxide cycle
SYO3AOP1_0123	PWY-4984	urea cycle
SYO3AOP1_0123	PWY-5	canavanine biosynthesis
SYO3AOP1_0123	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0123	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0159	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0159	PWY-4521	arsenite oxidation I (respiratory)
SYO3AOP1_0159	PWY-6692	Fe(II) oxidation
SYO3AOP1_0159	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0160	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0160	PWY-4521	arsenite oxidation I (respiratory)
SYO3AOP1_0160	PWY-6692	Fe(II) oxidation
SYO3AOP1_0160	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0165	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0165	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0171	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_0171	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_0177	PWY-6167	flavin biosynthesis II (archaea)
SYO3AOP1_0177	PWY-6168	flavin biosynthesis III (fungi)
SYO3AOP1_0177	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0185	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_0185	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SYO3AOP1_0198	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SYO3AOP1_0201	PWY-5958	acridone alkaloid biosynthesis
SYO3AOP1_0201	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_0201	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_0202	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_0202	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_0202	PWY-6901	superpathway of glucose and xylose degradation
SYO3AOP1_0202	PWY-7003	glycerol degradation to butanol
SYO3AOP1_0203	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0203	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0208	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_0211	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
SYO3AOP1_0226	PWY-6167	flavin biosynthesis II (archaea)
SYO3AOP1_0226	PWY-6168	flavin biosynthesis III (fungi)
SYO3AOP1_0228	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_0228	PWY-5103	L-isoleucine biosynthesis III
SYO3AOP1_0228	PWY-5104	L-isoleucine biosynthesis IV
SYO3AOP1_0228	PWY-7111	pyruvate fermentation to isobutanol (engineered)
SYO3AOP1_0230	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_0230	PWY-5103	L-isoleucine biosynthesis III
SYO3AOP1_0230	PWY-5104	L-isoleucine biosynthesis IV
SYO3AOP1_0230	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
SYO3AOP1_0230	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
SYO3AOP1_0230	PWY-6389	(<i>S</i>)-acetoin biosynthesis
SYO3AOP1_0230	PWY-7111	pyruvate fermentation to isobutanol (engineered)
SYO3AOP1_0231	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_0231	PWY-5103	L-isoleucine biosynthesis III
SYO3AOP1_0231	PWY-5104	L-isoleucine biosynthesis IV
SYO3AOP1_0231	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
SYO3AOP1_0231	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
SYO3AOP1_0231	PWY-6389	(<i>S</i>)-acetoin biosynthesis
SYO3AOP1_0231	PWY-7111	pyruvate fermentation to isobutanol (engineered)
SYO3AOP1_0234	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SYO3AOP1_0234	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SYO3AOP1_0236	PWY-6700	queuosine biosynthesis
SYO3AOP1_0238	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0243	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0243	PWY-5686	UMP biosynthesis
SYO3AOP1_0243	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0248	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0248	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SYO3AOP1_0248	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SYO3AOP1_0248	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_0248	PWY-6728	methylaspartate cycle
SYO3AOP1_0248	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0248	PWY-7254	TCA cycle VII (acetate-producers)
SYO3AOP1_0248	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0258	PWY-2301	<i>myo</i>-inositol biosynthesis
SYO3AOP1_0258	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
SYO3AOP1_0258	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
SYO3AOP1_0258	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
SYO3AOP1_0258	PWY-6664	di-myo-inositol phosphate biosynthesis
SYO3AOP1_0270	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0315	PWY-5198	factor 420 biosynthesis
SYO3AOP1_0317	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SYO3AOP1_0317	PWY-6578	8-amino-7-oxononanoate biosynthesis III
SYO3AOP1_0317	PWY-7147	8-amino-7-oxononanoate biosynthesis II
SYO3AOP1_0324	PWY-6834	spermidine biosynthesis III
SYO3AOP1_0325	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
SYO3AOP1_0325	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
SYO3AOP1_0333	PWY-6891	thiazole biosynthesis II (Bacillus)
SYO3AOP1_0333	PWY-6892	thiazole biosynthesis I (E. coli)
SYO3AOP1_0333	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0334	PWY-6891	thiazole biosynthesis II (Bacillus)
SYO3AOP1_0334	PWY-6892	thiazole biosynthesis I (E. coli)
SYO3AOP1_0334	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0363	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
SYO3AOP1_0363	PWY-6167	flavin biosynthesis II (archaea)
SYO3AOP1_0363	PWY-6168	flavin biosynthesis III (fungi)
SYO3AOP1_0369	PWY-6823	molybdenum cofactor biosynthesis
SYO3AOP1_0370	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
SYO3AOP1_0370	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
SYO3AOP1_0370	PWY-6897	thiamin salvage II
SYO3AOP1_0370	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
SYO3AOP1_0370	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
SYO3AOP1_0370	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
SYO3AOP1_0370	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
SYO3AOP1_0376	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0376	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SYO3AOP1_0376	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SYO3AOP1_0376	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_0376	PWY-6728	methylaspartate cycle
SYO3AOP1_0376	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0376	PWY-7254	TCA cycle VII (acetate-producers)
SYO3AOP1_0376	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0377	PWY-6654	phosphopantothenate biosynthesis III
SYO3AOP1_0383	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_0383	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SYO3AOP1_0383	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_0383	PWY-5723	Rubisco shunt
SYO3AOP1_0383	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_0383	PWY-6886	1-butanol autotrophic biosynthesis
SYO3AOP1_0383	PWY-6901	superpathway of glucose and xylose degradation
SYO3AOP1_0383	PWY-7003	glycerol degradation to butanol
SYO3AOP1_0383	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SYO3AOP1_0383	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SYO3AOP1_0392	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
SYO3AOP1_0397	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_0397	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SYO3AOP1_0397	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_0397	PWY-7385	1,3-propanediol biosynthesis (engineered)
SYO3AOP1_0400	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SYO3AOP1_0400	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0400	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0400	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
SYO3AOP1_0400	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SYO3AOP1_0400	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SYO3AOP1_0405	PWY-723	alkylnitronates degradation
SYO3AOP1_0410	PWY-5155	&beta;-alanine biosynthesis III
SYO3AOP1_0412	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0415	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0415	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0416	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0416	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0418	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SYO3AOP1_0418	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
SYO3AOP1_0418	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SYO3AOP1_0418	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SYO3AOP1_0419	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0419	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0424	PWY-5269	cardiolipin biosynthesis II
SYO3AOP1_0424	PWY-5668	cardiolipin biosynthesis I
SYO3AOP1_0436	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SYO3AOP1_0436	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0436	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SYO3AOP1_0436	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SYO3AOP1_0436	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0436	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0436	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0436	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0437	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SYO3AOP1_0437	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0437	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
SYO3AOP1_0437	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
SYO3AOP1_0437	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0437	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0437	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
SYO3AOP1_0437	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0454	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0454	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0454	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0457	PWY-5194	siroheme biosynthesis
SYO3AOP1_0457	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
SYO3AOP1_0464	PWY-5194	siroheme biosynthesis
SYO3AOP1_0464	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
SYO3AOP1_0467	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0467	PWY-4521	arsenite oxidation I (respiratory)
SYO3AOP1_0467	PWY-6692	Fe(II) oxidation
SYO3AOP1_0467	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0472	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_0472	PWY-4521	arsenite oxidation I (respiratory)
SYO3AOP1_0472	PWY-6692	Fe(II) oxidation
SYO3AOP1_0472	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_0477	PWY-2201	folate transformations I
SYO3AOP1_0477	PWY-3841	folate transformations II
SYO3AOP1_0479	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0487	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
SYO3AOP1_0500	PWY-6938	NADH repair
SYO3AOP1_0519	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
SYO3AOP1_0521	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
SYO3AOP1_0524	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0528	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_0529	PWY-3821	galactose degradation III
SYO3AOP1_0529	PWY-6317	galactose degradation I (Leloir pathway)
SYO3AOP1_0529	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
SYO3AOP1_0529	PWY-6527	stachyose degradation
SYO3AOP1_0529	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
SYO3AOP1_0529	PWY-7344	UDP-D-galactose biosynthesis
SYO3AOP1_0539	PWY-101	photosynthesis light reactions
SYO3AOP1_0539	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
SYO3AOP1_0540	PWY-4981	L-proline biosynthesis II (from arginine)
SYO3AOP1_0540	PWY-4984	urea cycle
SYO3AOP1_0540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0541	PWY-5686	UMP biosynthesis
SYO3AOP1_0549	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SYO3AOP1_0554	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_0554	PWY-2942	L-lysine biosynthesis III
SYO3AOP1_0554	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_0555	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_0555	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_0555	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_0560	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
SYO3AOP1_0560	PWY-622	starch biosynthesis
SYO3AOP1_0569	PWY-6703	preQ<sub>0</sub> biosynthesis
SYO3AOP1_0578	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
SYO3AOP1_0578	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_0578	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SYO3AOP1_0578	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
SYO3AOP1_0582	PWY-6823	molybdenum cofactor biosynthesis
SYO3AOP1_0583	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0583	PWY-5686	UMP biosynthesis
SYO3AOP1_0583	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0593	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SYO3AOP1_0593	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SYO3AOP1_0595	PWY-5269	cardiolipin biosynthesis II
SYO3AOP1_0595	PWY-5668	cardiolipin biosynthesis I
SYO3AOP1_0604	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
SYO3AOP1_0609	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SYO3AOP1_0609	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SYO3AOP1_0619	PWY-5392	reductive TCA cycle II
SYO3AOP1_0619	PWY-5537	pyruvate fermentation to acetate V
SYO3AOP1_0619	PWY-5538	pyruvate fermentation to acetate VI
SYO3AOP1_0619	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_0619	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_0619	PWY-6728	methylaspartate cycle
SYO3AOP1_0619	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0619	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SYO3AOP1_0620	PWY-5392	reductive TCA cycle II
SYO3AOP1_0620	PWY-5537	pyruvate fermentation to acetate V
SYO3AOP1_0620	PWY-5538	pyruvate fermentation to acetate VI
SYO3AOP1_0620	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_0620	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_0620	PWY-6728	methylaspartate cycle
SYO3AOP1_0620	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0620	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SYO3AOP1_0621	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
SYO3AOP1_0624	PWY-1622	formaldehyde assimilation I (serine pathway)
SYO3AOP1_0624	PWY-5392	reductive TCA cycle II
SYO3AOP1_0624	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SYO3AOP1_0624	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_0624	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_0624	PWY-6728	methylaspartate cycle
SYO3AOP1_0624	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0624	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SYO3AOP1_0624	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SYO3AOP1_0636	PWY-6123	inosine-5'-phosphate biosynthesis I
SYO3AOP1_0636	PWY-7234	inosine-5'-phosphate biosynthesis III
SYO3AOP1_0643	PWY-2201	folate transformations I
SYO3AOP1_0643	PWY-5497	purine nucleobases degradation II (anaerobic)
SYO3AOP1_0643	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_0643	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
SYO3AOP1_0644	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_0644	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_0644	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_0645	PWY-5269	cardiolipin biosynthesis II
SYO3AOP1_0645	PWY-5668	cardiolipin biosynthesis I
SYO3AOP1_0647	PWY-5316	nicotine biosynthesis
SYO3AOP1_0647	PWY-5381	pyridine nucleotide cycling (plants)
SYO3AOP1_0647	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
SYO3AOP1_0647	PWY-7342	superpathway of nicotine biosynthesis
SYO3AOP1_0648	PWY-7396	butanol and isobutanol biosynthesis (engineered)
SYO3AOP1_0652	PWY-6891	thiazole biosynthesis II (Bacillus)
SYO3AOP1_0652	PWY-6892	thiazole biosynthesis I (E. coli)
SYO3AOP1_0652	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0676	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
SYO3AOP1_0676	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
SYO3AOP1_0678	PWY-5316	nicotine biosynthesis
SYO3AOP1_0678	PWY-7342	superpathway of nicotine biosynthesis
SYO3AOP1_0682	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
SYO3AOP1_0687	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_0687	PWY-2942	L-lysine biosynthesis III
SYO3AOP1_0687	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_0687	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0687	PWY-6559	spermidine biosynthesis II
SYO3AOP1_0687	PWY-6562	norspermidine biosynthesis
SYO3AOP1_0687	PWY-7153	grixazone biosynthesis
SYO3AOP1_0687	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_0690	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_0690	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SYO3AOP1_0694	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_0694	PWY-6549	L-glutamine biosynthesis III
SYO3AOP1_0694	PWY-6728	methylaspartate cycle
SYO3AOP1_0694	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_0694	PWY-7124	ethylene biosynthesis V (engineered)
SYO3AOP1_0694	PWY-7254	TCA cycle VII (acetate-producers)
SYO3AOP1_0694	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
SYO3AOP1_0706	PWY-6910	hydroxymethylpyrimidine salvage
SYO3AOP1_0706	PWY-7356	thiamin salvage IV (yeast)
SYO3AOP1_0706	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
SYO3AOP1_0708	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_0775	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_0788	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SYO3AOP1_0788	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SYO3AOP1_0801	PWY-3461	L-tyrosine biosynthesis II
SYO3AOP1_0801	PWY-3462	L-phenylalanine biosynthesis II
SYO3AOP1_0801	PWY-6120	L-tyrosine biosynthesis III
SYO3AOP1_0801	PWY-6627	salinosporamide A biosynthesis
SYO3AOP1_0801	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
SYO3AOP1_0802	PWY-2301	<i>myo</i>-inositol biosynthesis
SYO3AOP1_0802	PWY-4702	phytate degradation I
SYO3AOP1_0802	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
SYO3AOP1_0803	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_0803	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_0803	PWY-6886	1-butanol autotrophic biosynthesis
SYO3AOP1_0803	PWY-6901	superpathway of glucose and xylose degradation
SYO3AOP1_0803	PWY-7003	glycerol degradation to butanol
SYO3AOP1_0805	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
SYO3AOP1_0805	PWY-6596	adenosine nucleotides degradation I
SYO3AOP1_0805	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0816	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
SYO3AOP1_0819	PWY-6123	inosine-5'-phosphate biosynthesis I
SYO3AOP1_0819	PWY-6124	inosine-5'-phosphate biosynthesis II
SYO3AOP1_0819	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0819	PWY-7234	inosine-5'-phosphate biosynthesis III
SYO3AOP1_0823	PWY-4381	fatty acid biosynthesis initiation I
SYO3AOP1_0827	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
SYO3AOP1_0838	PWY-5964	guanylyl molybdenum cofactor biosynthesis
SYO3AOP1_0839	PWY-6936	seleno-amino acid biosynthesis
SYO3AOP1_0840	PWY-6700	queuosine biosynthesis
SYO3AOP1_0844	PWY-6834	spermidine biosynthesis III
SYO3AOP1_0852	PWY-6891	thiazole biosynthesis II (Bacillus)
SYO3AOP1_0852	PWY-6892	thiazole biosynthesis I (E. coli)
SYO3AOP1_0856	PWY-6123	inosine-5'-phosphate biosynthesis I
SYO3AOP1_0856	PWY-6124	inosine-5'-phosphate biosynthesis II
SYO3AOP1_0856	PWY-7234	inosine-5'-phosphate biosynthesis III
SYO3AOP1_0857	PWY-3801	sucrose degradation II (sucrose synthase)
SYO3AOP1_0857	PWY-6527	stachyose degradation
SYO3AOP1_0857	PWY-6981	chitin biosynthesis
SYO3AOP1_0857	PWY-7238	sucrose biosynthesis II
SYO3AOP1_0857	PWY-7343	UDP-glucose biosynthesis
SYO3AOP1_0874	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0914	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
SYO3AOP1_0919	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
SYO3AOP1_0943	PWY-5316	nicotine biosynthesis
SYO3AOP1_0943	PWY-7342	superpathway of nicotine biosynthesis
SYO3AOP1_0955	PWY-6654	phosphopantothenate biosynthesis III
SYO3AOP1_0978	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_0987	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_0987	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_0997	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
SYO3AOP1_0997	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
SYO3AOP1_1001	PWY-6749	CMP-legionaminate biosynthesis I
SYO3AOP1_1024	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SYO3AOP1_1024	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SYO3AOP1_1024	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
SYO3AOP1_1025	PWY-1622	formaldehyde assimilation I (serine pathway)
SYO3AOP1_1025	PWY-181	photorespiration
SYO3AOP1_1025	PWY-2161	folate polyglutamylation
SYO3AOP1_1025	PWY-2201	folate transformations I
SYO3AOP1_1025	PWY-3661	glycine betaine degradation I
SYO3AOP1_1025	PWY-3661-1	glycine betaine degradation II (mammalian)
SYO3AOP1_1025	PWY-3841	folate transformations II
SYO3AOP1_1025	PWY-5497	purine nucleobases degradation II (anaerobic)
SYO3AOP1_1033	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_1033	PWY-6871	3-methylbutanol biosynthesis
SYO3AOP1_1036	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
SYO3AOP1_1036	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
SYO3AOP1_1036	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
SYO3AOP1_1042	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_1042	PWY-1622	formaldehyde assimilation I (serine pathway)
SYO3AOP1_1042	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
SYO3AOP1_1042	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_1042	PWY-5723	Rubisco shunt
SYO3AOP1_1042	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_1042	PWY-6886	1-butanol autotrophic biosynthesis
SYO3AOP1_1042	PWY-6901	superpathway of glucose and xylose degradation
SYO3AOP1_1042	PWY-7003	glycerol degradation to butanol
SYO3AOP1_1042	PWY-7124	ethylene biosynthesis V (engineered)
SYO3AOP1_1042	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
SYO3AOP1_1044	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_1044	PWY-2942	L-lysine biosynthesis III
SYO3AOP1_1044	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_1044	PWY-6559	spermidine biosynthesis II
SYO3AOP1_1044	PWY-6562	norspermidine biosynthesis
SYO3AOP1_1044	PWY-7153	grixazone biosynthesis
SYO3AOP1_1048	PWY-5663	tetrahydrobiopterin biosynthesis I
SYO3AOP1_1048	PWY-5664	tetrahydrobiopterin biosynthesis II
SYO3AOP1_1048	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SYO3AOP1_1048	PWY-6703	preQ<sub>0</sub> biosynthesis
SYO3AOP1_1048	PWY-6983	tetrahydrobiopterin biosynthesis III
SYO3AOP1_1048	PWY-7442	drosopterin and aurodrosopterin biosynthesis
SYO3AOP1_1054	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_1055	PWY-5392	reductive TCA cycle II
SYO3AOP1_1055	PWY-5537	pyruvate fermentation to acetate V
SYO3AOP1_1055	PWY-5538	pyruvate fermentation to acetate VI
SYO3AOP1_1055	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_1055	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_1055	PWY-6728	methylaspartate cycle
SYO3AOP1_1055	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_1055	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SYO3AOP1_1056	PWY-5392	reductive TCA cycle II
SYO3AOP1_1056	PWY-5537	pyruvate fermentation to acetate V
SYO3AOP1_1056	PWY-5538	pyruvate fermentation to acetate VI
SYO3AOP1_1056	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_1056	PWY-5913	TCA cycle VI (obligate autotrophs)
SYO3AOP1_1056	PWY-6728	methylaspartate cycle
SYO3AOP1_1056	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_1056	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
SYO3AOP1_1064	PWY-702	L-methionine biosynthesis II
SYO3AOP1_1066	PWY-6123	inosine-5'-phosphate biosynthesis I
SYO3AOP1_1066	PWY-6124	inosine-5'-phosphate biosynthesis II
SYO3AOP1_1066	PWY-7234	inosine-5'-phosphate biosynthesis III
SYO3AOP1_1067	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
SYO3AOP1_1067	PWY-2201	folate transformations I
SYO3AOP1_1067	PWY-3841	folate transformations II
SYO3AOP1_1067	PWY-5030	L-histidine degradation III
SYO3AOP1_1067	PWY-5497	purine nucleobases degradation II (anaerobic)
SYO3AOP1_1067	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
SYO3AOP1_1073	PWY-381	nitrate reduction II (assimilatory)
SYO3AOP1_1073	PWY-5675	nitrate reduction V (assimilatory)
SYO3AOP1_1073	PWY-6549	L-glutamine biosynthesis III
SYO3AOP1_1073	PWY-6963	ammonia assimilation cycle I
SYO3AOP1_1073	PWY-6964	ammonia assimilation cycle II
SYO3AOP1_1089	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
SYO3AOP1_1089	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
SYO3AOP1_1093	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
SYO3AOP1_1093	PWY-7177	UTP and CTP dephosphorylation II
SYO3AOP1_1093	PWY-7185	UTP and CTP dephosphorylation I
SYO3AOP1_1097	PWY-6823	molybdenum cofactor biosynthesis
SYO3AOP1_1102	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_1102	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_1102	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_1102	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
SYO3AOP1_1107	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_1108	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
SYO3AOP1_1108	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
SYO3AOP1_1108	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
SYO3AOP1_1147	PWY-5667	CDP-diacylglycerol biosynthesis I
SYO3AOP1_1147	PWY-5981	CDP-diacylglycerol biosynthesis III
SYO3AOP1_1147	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
SYO3AOP1_1147	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
SYO3AOP1_1148	PWY-7560	methylerythritol phosphate pathway II
SYO3AOP1_1151	PWY-4381	fatty acid biosynthesis initiation I
SYO3AOP1_1151	PWY-5743	3-hydroxypropanoate cycle
SYO3AOP1_1151	PWY-5744	glyoxylate assimilation
SYO3AOP1_1151	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SYO3AOP1_1151	PWY-6679	jadomycin biosynthesis
SYO3AOP1_1151	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SYO3AOP1_1152	PWY-1622	formaldehyde assimilation I (serine pathway)
SYO3AOP1_1152	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_1153	PWY-1042	glycolysis IV (plant cytosol)
SYO3AOP1_1153	PWY-5484	glycolysis II (from fructose 6-phosphate)
SYO3AOP1_1153	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_1153	PWY-7003	glycerol degradation to butanol
SYO3AOP1_1157	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
SYO3AOP1_1158	PWY-4381	fatty acid biosynthesis initiation I
SYO3AOP1_1158	PWY-6799	fatty acid biosynthesis (plant mitochondria)
SYO3AOP1_1158	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SYO3AOP1_1161	PWY-5381	pyridine nucleotide cycling (plants)
SYO3AOP1_1161	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
SYO3AOP1_1187	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
SYO3AOP1_1187	PWY-6148	tetrahydromethanopterin biosynthesis
SYO3AOP1_1187	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
SYO3AOP1_1187	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SYO3AOP1_1195	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
SYO3AOP1_1211	PWY-7183	pyrimidine nucleobases salvage I
SYO3AOP1_1214	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_1214	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_1215	PWY-5381	pyridine nucleotide cycling (plants)
SYO3AOP1_1228	PWY-5057	L-valine degradation II
SYO3AOP1_1228	PWY-5076	L-leucine degradation III
SYO3AOP1_1228	PWY-5078	L-isoleucine degradation II
SYO3AOP1_1228	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_1228	PWY-5103	L-isoleucine biosynthesis III
SYO3AOP1_1228	PWY-5104	L-isoleucine biosynthesis IV
SYO3AOP1_1228	PWY-5108	L-isoleucine biosynthesis V
SYO3AOP1_1235	PWY-5958	acridone alkaloid biosynthesis
SYO3AOP1_1235	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_1235	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_1245	PWY-5381	pyridine nucleotide cycling (plants)
SYO3AOP1_1245	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
SYO3AOP1_1245	PWY-6596	adenosine nucleotides degradation I
SYO3AOP1_1245	PWY-6606	guanosine nucleotides degradation II
SYO3AOP1_1245	PWY-6607	guanosine nucleotides degradation I
SYO3AOP1_1245	PWY-6608	guanosine nucleotides degradation III
SYO3AOP1_1245	PWY-7185	UTP and CTP dephosphorylation I
SYO3AOP1_1246	PWY-5958	acridone alkaloid biosynthesis
SYO3AOP1_1246	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_1246	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
SYO3AOP1_1258	PWY-6854	ethylene biosynthesis III (microbes)
SYO3AOP1_1259	PWY-6700	queuosine biosynthesis
SYO3AOP1_1263	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SYO3AOP1_1263	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SYO3AOP1_1263	PWY-5989	stearate biosynthesis II (bacteria and plants)
SYO3AOP1_1263	PWY-6113	superpathway of mycolate biosynthesis
SYO3AOP1_1263	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SYO3AOP1_1263	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SYO3AOP1_1263	PWY-7096	triclosan resistance
SYO3AOP1_1263	PWYG-321	mycolate biosynthesis
SYO3AOP1_1265	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
SYO3AOP1_1265	PWY-5389	3-methylthiopropanoate biosynthesis
SYO3AOP1_1268	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
SYO3AOP1_1275	PWY-5101	L-isoleucine biosynthesis II
SYO3AOP1_1275	PWY-5103	L-isoleucine biosynthesis III
SYO3AOP1_1275	PWY-5104	L-isoleucine biosynthesis IV
SYO3AOP1_1275	PWY-7111	pyruvate fermentation to isobutanol (engineered)
SYO3AOP1_1276	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
SYO3AOP1_1276	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
SYO3AOP1_1278	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
SYO3AOP1_1281	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
SYO3AOP1_1281	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
SYO3AOP1_1285	PWY-6167	flavin biosynthesis II (archaea)
SYO3AOP1_1285	PWY-6168	flavin biosynthesis III (fungi)
SYO3AOP1_1297	PWY-6823	molybdenum cofactor biosynthesis
SYO3AOP1_1297	PWY-6891	thiazole biosynthesis II (Bacillus)
SYO3AOP1_1297	PWY-6892	thiazole biosynthesis I (E. coli)
SYO3AOP1_1297	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
SYO3AOP1_1303	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_1305	PWY-5747	2-methylcitrate cycle II
SYO3AOP1_1307	PWY-2781	<i>cis</i>-zeatin biosynthesis
SYO3AOP1_1313	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
SYO3AOP1_1313	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
SYO3AOP1_1320	PWY-5686	UMP biosynthesis
SYO3AOP1_1325	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_1335	PWY-4983	L-citrulline-nitric oxide cycle
SYO3AOP1_1335	PWY-4984	urea cycle
SYO3AOP1_1335	PWY-5	canavanine biosynthesis
SYO3AOP1_1335	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_1335	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_1338	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
SYO3AOP1_1351	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_1351	PWY-7205	CMP phosphorylation
SYO3AOP1_1355	PWY-6703	preQ<sub>0</sub> biosynthesis
SYO3AOP1_1358	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
SYO3AOP1_1361	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_1361	PWY-5686	UMP biosynthesis
SYO3AOP1_1361	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_1374	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
SYO3AOP1_1374	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
SYO3AOP1_1374	PWY-6936	seleno-amino acid biosynthesis
SYO3AOP1_1374	PWY-702	L-methionine biosynthesis II
SYO3AOP1_1376	PWY-3961	phosphopantothenate biosynthesis II
SYO3AOP1_1386	PWY-622	starch biosynthesis
SYO3AOP1_1387	PWY-6317	galactose degradation I (Leloir pathway)
SYO3AOP1_1387	PWY-6527	stachyose degradation
SYO3AOP1_1388	PWY-3221	dTDP-L-rhamnose biosynthesis II
SYO3AOP1_1388	PWY-6808	dTDP-D-forosamine biosynthesis
SYO3AOP1_1388	PWY-6942	dTDP-D-desosamine biosynthesis
SYO3AOP1_1388	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
SYO3AOP1_1388	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
SYO3AOP1_1388	PWY-6974	dTDP-L-olivose biosynthesis
SYO3AOP1_1388	PWY-6976	dTDP-L-mycarose biosynthesis
SYO3AOP1_1388	PWY-7104	dTDP-L-megosamine biosynthesis
SYO3AOP1_1388	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
SYO3AOP1_1388	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
SYO3AOP1_1388	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
SYO3AOP1_1388	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
SYO3AOP1_1388	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
SYO3AOP1_1388	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
SYO3AOP1_1388	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
SYO3AOP1_1388	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
SYO3AOP1_1390	PWY-3221	dTDP-L-rhamnose biosynthesis II
SYO3AOP1_1390	PWY-6808	dTDP-D-forosamine biosynthesis
SYO3AOP1_1390	PWY-6942	dTDP-D-desosamine biosynthesis
SYO3AOP1_1390	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
SYO3AOP1_1390	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
SYO3AOP1_1390	PWY-6974	dTDP-L-olivose biosynthesis
SYO3AOP1_1390	PWY-6976	dTDP-L-mycarose biosynthesis
SYO3AOP1_1390	PWY-7104	dTDP-L-megosamine biosynthesis
SYO3AOP1_1390	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
SYO3AOP1_1390	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
SYO3AOP1_1390	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
SYO3AOP1_1390	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
SYO3AOP1_1390	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
SYO3AOP1_1390	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
SYO3AOP1_1390	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
SYO3AOP1_1390	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
SYO3AOP1_1406	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
SYO3AOP1_1407	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
SYO3AOP1_1407	PWY-5739	GDP-D-perosamine biosynthesis
SYO3AOP1_1407	PWY-5740	GDP-L-colitose biosynthesis
SYO3AOP1_1407	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
SYO3AOP1_1432	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_1434	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
SYO3AOP1_1439	PWY-3341	L-proline biosynthesis III
SYO3AOP1_1439	PWY-4981	L-proline biosynthesis II (from arginine)
SYO3AOP1_1439	PWY-6344	L-ornithine degradation II (Stickland reaction)
SYO3AOP1_1451	PWY-4381	fatty acid biosynthesis initiation I
SYO3AOP1_1451	PWY-5743	3-hydroxypropanoate cycle
SYO3AOP1_1451	PWY-5744	glyoxylate assimilation
SYO3AOP1_1451	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
SYO3AOP1_1451	PWY-6679	jadomycin biosynthesis
SYO3AOP1_1451	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SYO3AOP1_1453	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_1453	PWY-6692	Fe(II) oxidation
SYO3AOP1_1453	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
SYO3AOP1_1453	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_1456	PWY-5686	UMP biosynthesis
SYO3AOP1_1460	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_1460	PWY-6416	quinate degradation II
SYO3AOP1_1460	PWY-6707	gallate biosynthesis
SYO3AOP1_1486	PWY-6749	CMP-legionaminate biosynthesis I
SYO3AOP1_1491	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SYO3AOP1_1491	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SYO3AOP1_1491	PWY-5989	stearate biosynthesis II (bacteria and plants)
SYO3AOP1_1491	PWY-5994	palmitate biosynthesis I (animals and fungi)
SYO3AOP1_1491	PWY-6113	superpathway of mycolate biosynthesis
SYO3AOP1_1491	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SYO3AOP1_1491	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SYO3AOP1_1491	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SYO3AOP1_1491	PWYG-321	mycolate biosynthesis
SYO3AOP1_1495	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
SYO3AOP1_1495	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
SYO3AOP1_1498	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
SYO3AOP1_1499	PWY-5198	factor 420 biosynthesis
SYO3AOP1_1499	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
SYO3AOP1_1499	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
SYO3AOP1_1504	PWY-6832	2-aminoethylphosphonate degradation II
SYO3AOP1_1507	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SYO3AOP1_1507	PWY-5723	Rubisco shunt
SYO3AOP1_1510	PWY-2161	folate polyglutamylation
SYO3AOP1_1528	PWY-5667	CDP-diacylglycerol biosynthesis I
SYO3AOP1_1528	PWY-5981	CDP-diacylglycerol biosynthesis III
SYO3AOP1_1558	PWY-5381	pyridine nucleotide cycling (plants)
SYO3AOP1_1558	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
SYO3AOP1_1561	PWY-3801	sucrose degradation II (sucrose synthase)
SYO3AOP1_1561	PWY-5054	sorbitol biosynthesis I
SYO3AOP1_1561	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
SYO3AOP1_1561	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
SYO3AOP1_1561	PWY-5659	GDP-mannose biosynthesis
SYO3AOP1_1561	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_1561	PWY-621	sucrose degradation III (sucrose invertase)
SYO3AOP1_1561	PWY-622	starch biosynthesis
SYO3AOP1_1561	PWY-6531	mannitol cycle
SYO3AOP1_1561	PWY-6981	chitin biosynthesis
SYO3AOP1_1561	PWY-7238	sucrose biosynthesis II
SYO3AOP1_1561	PWY-7347	sucrose biosynthesis III
SYO3AOP1_1561	PWY-7385	1,3-propanediol biosynthesis (engineered)
SYO3AOP1_1566	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
SYO3AOP1_1566	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
SYO3AOP1_1582	PWY-2941	L-lysine biosynthesis II
SYO3AOP1_1582	PWY-2942	L-lysine biosynthesis III
SYO3AOP1_1582	PWY-5097	L-lysine biosynthesis VI
SYO3AOP1_1587	PWY-6672	<i>cis</i>-genanyl-CoA degradation
SYO3AOP1_1587	PWY-7118	chitin degradation to ethanol
SYO3AOP1_1588	PWY-5839	menaquinol-7 biosynthesis
SYO3AOP1_1588	PWY-5844	menaquinol-9 biosynthesis
SYO3AOP1_1588	PWY-5849	menaquinol-6 biosynthesis
SYO3AOP1_1588	PWY-5890	menaquinol-10 biosynthesis
SYO3AOP1_1588	PWY-5891	menaquinol-11 biosynthesis
SYO3AOP1_1588	PWY-5892	menaquinol-12 biosynthesis
SYO3AOP1_1588	PWY-5895	menaquinol-13 biosynthesis
SYO3AOP1_1596	PWY-43	putrescine biosynthesis II
SYO3AOP1_1605	PWY-3781	aerobic respiration I (cytochrome c)
SYO3AOP1_1605	PWY-4302	aerobic respiration III (alternative oxidase pathway)
SYO3AOP1_1605	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
SYO3AOP1_1605	PWY-5690	TCA cycle II (plants and fungi)
SYO3AOP1_1605	PWY-6728	methylaspartate cycle
SYO3AOP1_1605	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
SYO3AOP1_1605	PWY-7254	TCA cycle VII (acetate-producers)
SYO3AOP1_1605	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
SYO3AOP1_1618	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_1620	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_1628	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_1640	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
SYO3AOP1_1668	PWY-6012	acyl carrier protein metabolism I
SYO3AOP1_1668	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
SYO3AOP1_1671	PWY-5367	petroselinate biosynthesis
SYO3AOP1_1671	PWY-5971	palmitate biosynthesis II (bacteria and plants)
SYO3AOP1_1671	PWY-5973	<i>cis</i>-vaccenate biosynthesis
SYO3AOP1_1671	PWY-5989	stearate biosynthesis II (bacteria and plants)
SYO3AOP1_1671	PWY-5994	palmitate biosynthesis I (animals and fungi)
SYO3AOP1_1671	PWY-6113	superpathway of mycolate biosynthesis
SYO3AOP1_1671	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
SYO3AOP1_1671	PWY-6519	8-amino-7-oxononanoate biosynthesis I
SYO3AOP1_1671	PWY-6951	SYO3AOP1_1671|SYO3AOP1_1671|YP_001931823.1|GeneID:6331861
SYO3AOP1_1671	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
SYO3AOP1_1671	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
SYO3AOP1_1671	PWYG-321	mycolate biosynthesis
SYO3AOP1_1676	PWY-6749	CMP-legionaminate biosynthesis I
SYO3AOP1_1703	PWY-6578	8-amino-7-oxononanoate biosynthesis III
SYO3AOP1_1724	PWY-5686	UMP biosynthesis
SYO3AOP1_1731	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
SYO3AOP1_1731	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
SYO3AOP1_1733	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_1733	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_1733	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_1734	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
SYO3AOP1_1734	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
SYO3AOP1_1734	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
SYO3AOP1_1754	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
SYO3AOP1_1761	PWY-6167	flavin biosynthesis II (archaea)
SYO3AOP1_1761	PWY-6168	flavin biosynthesis III (fungi)
SYO3AOP1_1761	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
SYO3AOP1_1762	PWY-5674	nitrate reduction IV (dissimilatory)
SYO3AOP1_1764	PWY-6599	guanine and guanosine salvage II
SYO3AOP1_1764	PWY-6609	adenine and adenosine salvage III
SYO3AOP1_1764	PWY-6610	adenine and adenosine salvage IV
SYO3AOP1_1764	PWY-6620	guanine and guanosine salvage
SYO3AOP1_1765	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
SYO3AOP1_1765	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
SYO3AOP1_1765	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
SYO3AOP1_1765	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
SYO3AOP1_1775	PWY-6871	3-methylbutanol biosynthesis
SYO3AOP1_1777	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
SYO3AOP1_1777	PWY-5723	Rubisco shunt
