TherJR_0014 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) TherJR_0016 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II TherJR_0023 PWY-5198 factor 420 biosynthesis TherJR_0023 PWY-6994 L-pyrrolysine biosynthesis TherJR_0028 PWY-5250 methanogenesis from trimethylamine TherJR_0038 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_0038 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_0038 PWY-6268 adenosylcobalamin salvage from cobalamin TherJR_0038 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_0048 PWY-5437 L-threonine degradation I TherJR_0048 PWY-7013 L-1,2-propanediol degradation TherJR_0049 PWY-5482 pyruvate fermentation to acetate II TherJR_0049 PWY-5485 pyruvate fermentation to acetate IV TherJR_0049 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_0057 PWY-5250 methanogenesis from trimethylamine TherJR_0066 PWY-6898 thiamin salvage III TherJR_0066 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) TherJR_0066 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) TherJR_0071 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I TherJR_0071 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) TherJR_0071 PWY-6164 3-dehydroquinate biosynthesis I TherJR_0072 PWY-3461 L-tyrosine biosynthesis II TherJR_0072 PWY-3462 L-phenylalanine biosynthesis II TherJR_0072 PWY-6120 L-tyrosine biosynthesis III TherJR_0072 PWY-6627 salinosporamide A biosynthesis TherJR_0072 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) TherJR_0085 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III TherJR_0085 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I TherJR_0085 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II TherJR_0085 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation TherJR_0085 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV TherJR_0085 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP TherJR_0125 PWY-7052 cyanophycin metabolism TherJR_0126 PWY-7052 cyanophycin metabolism TherJR_0127 PWY-7560 methylerythritol phosphate pathway II TherJR_0131 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II TherJR_0139 PWY-7374 1,4-dihydroxy-6-naphthoate biosynthesis I TherJR_0143 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_0143 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_0144 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_0144 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_0162 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_0162 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_0198 PWY-6749 CMP-legionaminate biosynthesis I TherJR_0206 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III TherJR_0206 PWY-7176 UTP and CTP de novo biosynthesis TherJR_0206 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I TherJR_0206 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II TherJR_0206 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation TherJR_0206 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV TherJR_0206 PWY-7205 CMP phosphorylation TherJR_0206 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP TherJR_0206 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II TherJR_0206 PWY-7221 guanosine ribonucleotides de novo biosynthesis TherJR_0206 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II TherJR_0206 PWY-7224 purine deoxyribonucleosides salvage TherJR_0206 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I TherJR_0206 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis TherJR_0208 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate TherJR_0208 PWY-2161 folate polyglutamylation TherJR_0208 PWY-2201 folate transformations I TherJR_0208 PWY-3841 folate transformations II TherJR_0210 PWY-6614 tetrahydrofolate biosynthesis TherJR_0211 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_0211 PWY-6148 tetrahydromethanopterin biosynthesis TherJR_0211 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) TherJR_0211 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) TherJR_0212 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_0212 PWY-6148 tetrahydromethanopterin biosynthesis TherJR_0212 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) TherJR_0212 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) TherJR_0214 PWY-6654 phosphopantothenate biosynthesis III TherJR_0216 PWY-5155 β-alanine biosynthesis III TherJR_0217 PWY-5316 nicotine biosynthesis TherJR_0217 PWY-7342 superpathway of nicotine biosynthesis TherJR_0218 PWY-5316 nicotine biosynthesis TherJR_0218 PWY-7342 superpathway of nicotine biosynthesis TherJR_0219 PWY-5316 nicotine biosynthesis TherJR_0219 PWY-5381 pyridine nucleotide cycling (plants) TherJR_0219 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde TherJR_0219 PWY-7342 superpathway of nicotine biosynthesis TherJR_0220 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) TherJR_0220 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) TherJR_0225 PWY-3961 phosphopantothenate biosynthesis II TherJR_0253 PWY-7560 methylerythritol phosphate pathway II TherJR_0254 PWY-7560 methylerythritol phosphate pathway II TherJR_0268 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_0269 PWY-6936 seleno-amino acid biosynthesis TherJR_0269 PWY-7274 D-cycloserine biosynthesis TherJR_0272 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III TherJR_0346 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0346 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0347 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0350 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0350 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0352 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0352 PWY-5686 UMP biosynthesis TherJR_0352 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0353 PWY-4981 L-proline biosynthesis II (from arginine) TherJR_0353 PWY-4984 urea cycle TherJR_0353 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0354 PWY-4983 L-citrulline-nitric oxide cycle TherJR_0354 PWY-4984 urea cycle TherJR_0354 PWY-5 canavanine biosynthesis TherJR_0354 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0354 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0356 PWY-4983 L-citrulline-nitric oxide cycle TherJR_0356 PWY-4984 urea cycle TherJR_0356 PWY-5 canavanine biosynthesis TherJR_0356 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_0356 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_0357 PWY-2941 L-lysine biosynthesis II TherJR_0357 PWY-2942 L-lysine biosynthesis III TherJR_0357 PWY-5097 L-lysine biosynthesis VI TherJR_0357 PWY-6559 spermidine biosynthesis II TherJR_0357 PWY-6562 norspermidine biosynthesis TherJR_0357 PWY-7153 grixazone biosynthesis TherJR_0358 PWY-5057 L-valine degradation II TherJR_0358 PWY-5076 L-leucine degradation III TherJR_0358 PWY-5078 L-isoleucine degradation II TherJR_0358 PWY-5101 L-isoleucine biosynthesis II TherJR_0358 PWY-5103 L-isoleucine biosynthesis III TherJR_0358 PWY-5104 L-isoleucine biosynthesis IV TherJR_0358 PWY-5108 L-isoleucine biosynthesis V TherJR_0359 PWY-5101 L-isoleucine biosynthesis II TherJR_0359 PWY-5103 L-isoleucine biosynthesis III TherJR_0359 PWY-5104 L-isoleucine biosynthesis IV TherJR_0359 PWY-7111 pyruvate fermentation to isobutanol (engineered) TherJR_0360 PWY-5101 L-isoleucine biosynthesis II TherJR_0360 PWY-5103 L-isoleucine biosynthesis III TherJR_0360 PWY-5104 L-isoleucine biosynthesis IV TherJR_0360 PWY-5938 (R)-acetoin biosynthesis I TherJR_0360 PWY-5939 (R)-acetoin biosynthesis II TherJR_0360 PWY-6389 (S)-acetoin biosynthesis TherJR_0360 PWY-7111 pyruvate fermentation to isobutanol (engineered) TherJR_0361 PWY-5101 L-isoleucine biosynthesis II TherJR_0361 PWY-5103 L-isoleucine biosynthesis III TherJR_0361 PWY-5104 L-isoleucine biosynthesis IV TherJR_0361 PWY-5938 (R)-acetoin biosynthesis I TherJR_0361 PWY-5939 (R)-acetoin biosynthesis II TherJR_0361 PWY-6389 (S)-acetoin biosynthesis TherJR_0361 PWY-7111 pyruvate fermentation to isobutanol (engineered) TherJR_0362 PWY-5101 L-isoleucine biosynthesis II TherJR_0362 PWY-5103 L-isoleucine biosynthesis III TherJR_0362 PWY-5104 L-isoleucine biosynthesis IV TherJR_0362 PWY-7111 pyruvate fermentation to isobutanol (engineered) TherJR_0363 PWY-6871 3-methylbutanol biosynthesis TherJR_0366 PWY-7396 butanol and isobutanol biosynthesis (engineered) TherJR_0367 PWY-5101 L-isoleucine biosynthesis II TherJR_0367 PWY-6871 3-methylbutanol biosynthesis TherJR_0368 PWY-6672 cis-genanyl-CoA degradation TherJR_0368 PWY-7118 chitin degradation to ethanol TherJR_0370 PWY-6672 cis-genanyl-CoA degradation TherJR_0370 PWY-7118 chitin degradation to ethanol TherJR_0379 PWY-6749 CMP-legionaminate biosynthesis I TherJR_0380 PWY-6749 CMP-legionaminate biosynthesis I TherJR_0415 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II TherJR_0449 PWY-4202 arsenate detoxification I (glutaredoxin) TherJR_0452 PWY-5350 thiosulfate disproportionation III (rhodanese) TherJR_0460 PWY-6823 molybdenum cofactor biosynthesis TherJR_0460 PWY-6891 thiazole biosynthesis II (Bacillus) TherJR_0460 PWY-6892 thiazole biosynthesis I (E. coli) TherJR_0460 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis TherJR_0470 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_0470 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_0474 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_0474 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) TherJR_0474 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_0474 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_0494 PWY-3221 dTDP-L-rhamnose biosynthesis II TherJR_0494 PWY-6808 dTDP-D-forosamine biosynthesis TherJR_0494 PWY-6942 dTDP-D-desosamine biosynthesis TherJR_0494 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis TherJR_0494 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis TherJR_0494 PWY-6974 dTDP-L-olivose biosynthesis TherJR_0494 PWY-6976 dTDP-L-mycarose biosynthesis TherJR_0494 PWY-7104 dTDP-L-megosamine biosynthesis TherJR_0494 PWY-7301 dTDP-β-L-noviose biosynthesis TherJR_0494 PWY-7312 dTDP-D-β-fucofuranose biosynthesis TherJR_0494 PWY-7315 dTDP-N-acetylthomosamine biosynthesis TherJR_0494 PWY-7316 dTDP-N-acetylviosamine biosynthesis TherJR_0494 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis TherJR_0494 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis TherJR_0494 PWY-7414 dTDP-α-D-mycaminose biosynthesis TherJR_0494 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis TherJR_0495 PWY-7315 dTDP-N-acetylthomosamine biosynthesis TherJR_0497 PWY-5350 thiosulfate disproportionation III (rhodanese) TherJR_0528 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_0528 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_0528 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_0544 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_0544 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_0548 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_0548 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_0548 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_0549 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_0549 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_0549 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_0550 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis TherJR_0551 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis TherJR_0604 PWY-40 putrescine biosynthesis I TherJR_0604 PWY-43 putrescine biosynthesis II TherJR_0604 PWY-6305 putrescine biosynthesis IV TherJR_0604 PWY-6834 spermidine biosynthesis III TherJR_0605 PWY-5704 urea degradation II TherJR_0606 PWY-5704 urea degradation II TherJR_0607 PWY-5704 urea degradation II TherJR_0613 PWY-5482 pyruvate fermentation to acetate II TherJR_0613 PWY-5485 pyruvate fermentation to acetate IV TherJR_0613 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_0619 PWY-7013 L-1,2-propanediol degradation TherJR_0620 PWY-7013 L-1,2-propanediol degradation TherJR_0625 PWY-5437 L-threonine degradation I TherJR_0625 PWY-7013 L-1,2-propanediol degradation TherJR_0629 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_0629 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_0629 PWY-6268 adenosylcobalamin salvage from cobalamin TherJR_0629 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_0633 PWY-6349 CDP-archaeol biosynthesis TherJR_0637 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) TherJR_0637 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) TherJR_0648 PWY-5437 L-threonine degradation I TherJR_0648 PWY-7013 L-1,2-propanediol degradation TherJR_0654 PWY-6012 acyl carrier protein metabolism I TherJR_0654 PWY-6012-1 acyl carrier protein metabolism II (mammalian) TherJR_0655 PWY-6938 NADH repair TherJR_0657 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) TherJR_0670 PWY-1881 formate oxidation to CO2 TherJR_0670 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_0670 PWY-6696 oxalate degradation III TherJR_0695 PWY-6823 molybdenum cofactor biosynthesis TherJR_0701 PWY-6871 3-methylbutanol biosynthesis TherJR_0709 PWY-381 nitrate reduction II (assimilatory) TherJR_0709 PWY-5675 nitrate reduction V (assimilatory) TherJR_0709 PWY-6549 L-glutamine biosynthesis III TherJR_0709 PWY-6963 ammonia assimilation cycle I TherJR_0709 PWY-6964 ammonia assimilation cycle II TherJR_0710 PWY-381 nitrate reduction II (assimilatory) TherJR_0710 PWY-5675 nitrate reduction V (assimilatory) TherJR_0710 PWY-6549 L-glutamine biosynthesis III TherJR_0710 PWY-6963 ammonia assimilation cycle I TherJR_0710 PWY-6964 ammonia assimilation cycle II TherJR_0721 PWY-5663 tetrahydrobiopterin biosynthesis I TherJR_0721 PWY-5664 tetrahydrobiopterin biosynthesis II TherJR_0721 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_0721 PWY-6703 preQ0 biosynthesis TherJR_0721 PWY-6983 tetrahydrobiopterin biosynthesis III TherJR_0721 PWY-7442 drosopterin and aurodrosopterin biosynthesis TherJR_0724 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) TherJR_0724 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) TherJR_0724 PWY-6897 thiamin salvage II TherJR_0724 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) TherJR_0724 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) TherJR_0724 PWY-6910 hydroxymethylpyrimidine salvage TherJR_0724 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) TherJR_0724 PWY-7356 thiamin salvage IV (yeast) TherJR_0724 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) TherJR_0725 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis TherJR_0726 PWY-6897 thiamin salvage II TherJR_0726 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) TherJR_0726 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) TherJR_0727 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) TherJR_0727 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) TherJR_0727 PWY-6896 thiamin salvage I TherJR_0727 PWY-6897 thiamin salvage II TherJR_0734 PWY-6823 molybdenum cofactor biosynthesis TherJR_0735 PWY-1341 phenylacetate degradation II (anaerobic) TherJR_0735 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) TherJR_0744 PWY-1881 formate oxidation to CO2 TherJR_0744 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_0744 PWY-6696 oxalate degradation III TherJR_0751 PWY-5481 pyruvate fermentation to lactate TherJR_0751 PWY-6901 superpathway of glucose and xylose degradation TherJR_0753 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) TherJR_0757 PWY-6823 molybdenum cofactor biosynthesis TherJR_0758 PWY-6823 molybdenum cofactor biosynthesis TherJR_0759 PWY-6823 molybdenum cofactor biosynthesis TherJR_0776 PWY-6936 seleno-amino acid biosynthesis TherJR_0786 PWY-6599 guanine and guanosine salvage II TherJR_0786 PWY-6609 adenine and adenosine salvage III TherJR_0786 PWY-6610 adenine and adenosine salvage IV TherJR_0786 PWY-6620 guanine and guanosine salvage TherJR_0787 PWY-7221 guanosine ribonucleotides de novo biosynthesis TherJR_0824 PWY-6123 inosine-5'-phosphate biosynthesis I TherJR_0824 PWY-7234 inosine-5'-phosphate biosynthesis III TherJR_0825 PWY-6123 inosine-5'-phosphate biosynthesis I TherJR_0825 PWY-6124 inosine-5'-phosphate biosynthesis II TherJR_0825 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_0825 PWY-7234 inosine-5'-phosphate biosynthesis III TherJR_0826 PWY-6123 inosine-5'-phosphate biosynthesis I TherJR_0826 PWY-6124 inosine-5'-phosphate biosynthesis II TherJR_0826 PWY-7234 inosine-5'-phosphate biosynthesis III TherJR_0827 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I TherJR_0827 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II TherJR_0827 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis TherJR_0827 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) TherJR_0828 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I TherJR_0828 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II TherJR_0828 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis TherJR_0829 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I TherJR_0829 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate TherJR_0830 PWY-6123 inosine-5'-phosphate biosynthesis I TherJR_0830 PWY-6124 inosine-5'-phosphate biosynthesis II TherJR_0830 PWY-7234 inosine-5'-phosphate biosynthesis III TherJR_0831 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I TherJR_0831 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II TherJR_0831 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis TherJR_0871 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation TherJR_0874 PWY-3081 L-lysine biosynthesis V TherJR_0874 PWY-6871 3-methylbutanol biosynthesis TherJR_0875 PWY-5913 TCA cycle VI (obligate autotrophs) TherJR_0875 PWY-6549 L-glutamine biosynthesis III TherJR_0875 PWY-6728 methylaspartate cycle TherJR_0875 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) TherJR_0875 PWY-7124 ethylene biosynthesis V (engineered) TherJR_0875 PWY-7254 TCA cycle VII (acetate-producers) TherJR_0875 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) TherJR_0884 PWY-6749 CMP-legionaminate biosynthesis I TherJR_0885 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose) TherJR_0885 PWY-622 starch biosynthesis TherJR_0906 PWY-3221 dTDP-L-rhamnose biosynthesis II TherJR_0906 PWY-6808 dTDP-D-forosamine biosynthesis TherJR_0906 PWY-6942 dTDP-D-desosamine biosynthesis TherJR_0906 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis TherJR_0906 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis TherJR_0906 PWY-6974 dTDP-L-olivose biosynthesis TherJR_0906 PWY-6976 dTDP-L-mycarose biosynthesis TherJR_0906 PWY-7104 dTDP-L-megosamine biosynthesis TherJR_0906 PWY-7301 dTDP-β-L-noviose biosynthesis TherJR_0906 PWY-7312 dTDP-D-β-fucofuranose biosynthesis TherJR_0906 PWY-7315 dTDP-N-acetylthomosamine biosynthesis TherJR_0906 PWY-7316 dTDP-N-acetylviosamine biosynthesis TherJR_0906 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis TherJR_0906 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis TherJR_0906 PWY-7414 dTDP-α-D-mycaminose biosynthesis TherJR_0906 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis TherJR_0908 PWY-5941 glycogen degradation II (eukaryotic) TherJR_0908 PWY-622 starch biosynthesis TherJR_0908 PWY-6731 starch degradation III TherJR_0908 PWY-6737 starch degradation V TherJR_0908 PWY-7238 sucrose biosynthesis II TherJR_0931 PWY-5350 thiosulfate disproportionation III (rhodanese) TherJR_0942 PWY-1881 formate oxidation to CO2 TherJR_0942 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_0942 PWY-6696 oxalate degradation III TherJR_0947 PWY-6703 preQ0 biosynthesis TherJR_0949 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type TherJR_0949 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_0949 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type TherJR_0949 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type TherJR_0979 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_0979 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_0982 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_0982 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_1025 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_1055 PWY-40 putrescine biosynthesis I TherJR_1055 PWY-43 putrescine biosynthesis II TherJR_1055 PWY-6305 putrescine biosynthesis IV TherJR_1055 PWY-6834 spermidine biosynthesis III TherJR_1057 PWY-40 putrescine biosynthesis I TherJR_1057 PWY-6305 putrescine biosynthesis IV TherJR_1111 PWY-3162 L-tryptophan degradation V (side chain pathway) TherJR_1111 PWY-5057 L-valine degradation II TherJR_1111 PWY-5076 L-leucine degradation III TherJR_1111 PWY-5078 L-isoleucine degradation II TherJR_1111 PWY-5079 L-phenylalanine degradation III TherJR_1111 PWY-5082 L-methionine degradation III TherJR_1111 PWY-5162 2-oxopentenoate degradation TherJR_1111 PWY-5436 L-threonine degradation IV TherJR_1111 PWY-5480 pyruvate fermentation to ethanol I TherJR_1111 PWY-5486 pyruvate fermentation to ethanol II TherJR_1111 PWY-5751 phenylethanol biosynthesis TherJR_1111 PWY-6028 acetoin degradation TherJR_1111 PWY-6313 serotonin degradation TherJR_1111 PWY-6333 acetaldehyde biosynthesis I TherJR_1111 PWY-6342 noradrenaline and adrenaline degradation TherJR_1111 PWY-6587 pyruvate fermentation to ethanol III TherJR_1111 PWY-6802 salidroside biosynthesis TherJR_1111 PWY-6871 3-methylbutanol biosynthesis TherJR_1111 PWY-7013 L-1,2-propanediol degradation TherJR_1111 PWY-7085 triethylamine degradation TherJR_1111 PWY-7111 pyruvate fermentation to isobutanol (engineered) TherJR_1111 PWY-7118 chitin degradation to ethanol TherJR_1111 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation TherJR_1111 PWY-7396 butanol and isobutanol biosynthesis (engineered) TherJR_1111 PWY-7557 dehydrodiconiferyl alcohol degradation TherJR_1113 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_1113 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_1114 PWY-5941 glycogen degradation II (eukaryotic) TherJR_1114 PWY-622 starch biosynthesis TherJR_1114 PWY-6731 starch degradation III TherJR_1114 PWY-6737 starch degradation V TherJR_1114 PWY-7238 sucrose biosynthesis II TherJR_1124 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_1133 PWY-5194 siroheme biosynthesis TherJR_1133 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1134 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_1135 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_1135 PWY-5189 tetrapyrrole biosynthesis II (from glycine) TherJR_1136 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_1136 PWY-5189 tetrapyrrole biosynthesis II (from glycine) TherJR_1136 PWY-5194 siroheme biosynthesis TherJR_1136 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1138 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_1138 PWY-5189 tetrapyrrole biosynthesis II (from glycine) TherJR_1142 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) TherJR_1153 PWY-5381 pyridine nucleotide cycling (plants) TherJR_1153 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde TherJR_1157 PWY-5372 carbon tetrachloride degradation II TherJR_1157 PWY-6780 hydrogen production VI TherJR_1165 PWY-2201 folate transformations I TherJR_1165 PWY-3841 folate transformations II TherJR_1176 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_1176 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_1188 PWY-6700 queuosine biosynthesis TherJR_1194 PWY-5437 L-threonine degradation I TherJR_1194 PWY-7013 L-1,2-propanediol degradation TherJR_1198 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_1200 PWY-6700 queuosine biosynthesis TherJR_1222 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_1222 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_1283 PWY-7533 gliotoxin biosynthesis TherJR_1306 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_1306 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_1306 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_1310 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_1310 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_1310 PWY-6268 adenosylcobalamin salvage from cobalamin TherJR_1310 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_1311 PWY-5443 aminopropanol phosphate biosynthesis I TherJR_1312 PWY-5443 aminopropanol phosphate biosynthesis I TherJR_1313 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_1313 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_1313 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_1315 PWY-6610 adenine and adenosine salvage IV TherJR_1319 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation TherJR_1319 PWY-6596 adenosine nucleotides degradation I TherJR_1319 PWY-7221 guanosine ribonucleotides de novo biosynthesis TherJR_1327 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) TherJR_1327 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) TherJR_1332 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_1332 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) TherJR_1332 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_1332 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_1365 PWY-7560 methylerythritol phosphate pathway II TherJR_1367 PWY-7560 methylerythritol phosphate pathway II TherJR_1381 PWY-5523 5,6-dimethylbenzimidazole biosynthesis TherJR_1381 PWY-6167 flavin biosynthesis II (archaea) TherJR_1381 PWY-6168 flavin biosynthesis III (fungi) TherJR_1391 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_1391 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_1393 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III TherJR_1393 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I TherJR_1393 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II TherJR_1393 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation TherJR_1396 PWY-2941 L-lysine biosynthesis II TherJR_1396 PWY-2942 L-lysine biosynthesis III TherJR_1396 PWY-5097 L-lysine biosynthesis VI TherJR_1399 PWY-2941 L-lysine biosynthesis II TherJR_1399 PWY-2942 L-lysine biosynthesis III TherJR_1399 PWY-5097 L-lysine biosynthesis VI TherJR_1399 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_1399 PWY-6559 spermidine biosynthesis II TherJR_1399 PWY-6562 norspermidine biosynthesis TherJR_1399 PWY-7153 grixazone biosynthesis TherJR_1399 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_1400 PWY-2941 L-lysine biosynthesis II TherJR_1400 PWY-2942 L-lysine biosynthesis III TherJR_1400 PWY-5097 L-lysine biosynthesis VI TherJR_1400 PWY-6559 spermidine biosynthesis II TherJR_1400 PWY-6562 norspermidine biosynthesis TherJR_1400 PWY-7153 grixazone biosynthesis TherJR_1401 PWY-2941 L-lysine biosynthesis II TherJR_1401 PWY-2942 L-lysine biosynthesis III TherJR_1401 PWY-5097 L-lysine biosynthesis VI TherJR_1434 PWY-5269 cardiolipin biosynthesis II TherJR_1434 PWY-5668 cardiolipin biosynthesis I TherJR_1442 PWY-5532 adenosine nucleotides degradation IV TherJR_1443 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) TherJR_1443 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) TherJR_1443 PWY-6897 thiamin salvage II TherJR_1443 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) TherJR_1443 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) TherJR_1443 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) TherJR_1443 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) TherJR_1449 PWY-6683 sulfate reduction III (assimilatory) TherJR_1494 PWY-2781 cis-zeatin biosynthesis TherJR_1539 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_1556 PWY-1042 glycolysis IV (plant cytosol) TherJR_1556 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) TherJR_1556 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_1556 PWY-5723 Rubisco shunt TherJR_1556 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_1556 PWY-6886 1-butanol autotrophic biosynthesis TherJR_1556 PWY-6901 superpathway of glucose and xylose degradation TherJR_1556 PWY-7003 glycerol degradation to butanol TherJR_1556 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) TherJR_1556 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) TherJR_1563 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1566 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1567 PWY-5194 siroheme biosynthesis TherJR_1567 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1569 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1571 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) TherJR_1580 PWY-5667 CDP-diacylglycerol biosynthesis I TherJR_1580 PWY-5981 CDP-diacylglycerol biosynthesis III TherJR_1590 PWY-7560 methylerythritol phosphate pathway II TherJR_1591 PWY-5667 CDP-diacylglycerol biosynthesis I TherJR_1591 PWY-5981 CDP-diacylglycerol biosynthesis III TherJR_1591 PWY-7411 superpathway of phosphatidate biosynthesis (yeast) TherJR_1591 PWY-7417 phospholipid remodeling (phosphatidate, yeast) TherJR_1592 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1592 PWY-7205 CMP phosphorylation TherJR_1597 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1598 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis TherJR_1599 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I TherJR_1599 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) TherJR_1599 PWY-6164 3-dehydroquinate biosynthesis I TherJR_1600 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I TherJR_1600 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) TherJR_1600 PWY-6164 3-dehydroquinate biosynthesis I TherJR_1606 PWY-5958 acridone alkaloid biosynthesis TherJR_1606 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis TherJR_1606 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis TherJR_1607 PWY-5958 acridone alkaloid biosynthesis TherJR_1607 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis TherJR_1607 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis TherJR_1608 PWY-3461 L-tyrosine biosynthesis II TherJR_1608 PWY-3462 L-phenylalanine biosynthesis II TherJR_1608 PWY-6120 L-tyrosine biosynthesis III TherJR_1608 PWY-6627 salinosporamide A biosynthesis TherJR_1641 PWY-2941 L-lysine biosynthesis II TherJR_1641 PWY-2942 L-lysine biosynthesis III TherJR_1641 PWY-5097 L-lysine biosynthesis VI TherJR_1659 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_1659 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_1663 PWY-7181 pyrimidine deoxyribonucleosides degradation TherJR_1664 PWY-4202 arsenate detoxification I (glutaredoxin) TherJR_1664 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation TherJR_1664 PWY-6608 guanosine nucleotides degradation III TherJR_1664 PWY-6609 adenine and adenosine salvage III TherJR_1664 PWY-6611 adenine and adenosine salvage V TherJR_1664 PWY-6620 guanine and guanosine salvage TherJR_1664 PWY-6627 salinosporamide A biosynthesis TherJR_1664 PWY-6644 fluoroacetate and fluorothreonine biosynthesis TherJR_1664 PWY-7179 purine deoxyribonucleosides degradation I TherJR_1664 PWY-7179-1 purine deoxyribonucleosides degradation TherJR_1665 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation TherJR_1683 PWY-1281 sulfoacetaldehyde degradation I TherJR_1683 PWY-5482 pyruvate fermentation to acetate II TherJR_1683 PWY-5485 pyruvate fermentation to acetate IV TherJR_1683 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_1683 PWY-6637 sulfolactate degradation II TherJR_1685 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_1685 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_1685 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_1688 PWY-6898 thiamin salvage III TherJR_1688 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) TherJR_1688 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) TherJR_1694 PWY-5083 NAD/NADH phosphorylation and dephosphorylation TherJR_1694 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) TherJR_1694 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) TherJR_1699 PWY-6891 thiazole biosynthesis II (Bacillus) TherJR_1699 PWY-6892 thiazole biosynthesis I (E. coli) TherJR_1699 PWY-7560 methylerythritol phosphate pathway II TherJR_1704 PWY-6936 seleno-amino acid biosynthesis TherJR_1706 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate TherJR_1706 PWY-2201 folate transformations I TherJR_1706 PWY-3841 folate transformations II TherJR_1706 PWY-5030 L-histidine degradation III TherJR_1706 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_1706 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate TherJR_1707 PWY-101 photosynthesis light reactions TherJR_1707 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) TherJR_1709 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate TherJR_1709 PWY-2201 folate transformations I TherJR_1709 PWY-3841 folate transformations II TherJR_1709 PWY-5030 L-histidine degradation III TherJR_1709 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_1709 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate TherJR_1733 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1733 PWY-6416 quinate degradation II TherJR_1733 PWY-6707 gallate biosynthesis TherJR_1740 PWY-6164 3-dehydroquinate biosynthesis I TherJR_1741 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1742 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1756 PWY-6163 chorismate biosynthesis from 3-dehydroquinate TherJR_1758 PWY-5269 cardiolipin biosynthesis II TherJR_1758 PWY-5668 cardiolipin biosynthesis I TherJR_1759 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_1759 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_1770 PWY-5198 factor 420 biosynthesis TherJR_1772 PWY-5198 factor 420 biosynthesis TherJR_1772 PWY-7371 1,4-dihydroxy-6-naphthoate biosynthesis II TherJR_1772 PWY-7374 1,4-dihydroxy-6-naphthoate biosynthesis I TherJR_1774 PWY-5839 menaquinol-7 biosynthesis TherJR_1774 PWY-5844 menaquinol-9 biosynthesis TherJR_1774 PWY-5849 menaquinol-6 biosynthesis TherJR_1774 PWY-5890 menaquinol-10 biosynthesis TherJR_1774 PWY-5891 menaquinol-11 biosynthesis TherJR_1774 PWY-5892 menaquinol-12 biosynthesis TherJR_1774 PWY-5895 menaquinol-13 biosynthesis TherJR_1778 PWY-6834 spermidine biosynthesis III TherJR_1780 PWY-6167 flavin biosynthesis II (archaea) TherJR_1780 PWY-6168 flavin biosynthesis III (fungi) TherJR_1781 PWY-6167 flavin biosynthesis II (archaea) TherJR_1781 PWY-6168 flavin biosynthesis III (fungi) TherJR_1781 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) TherJR_1782 PWY-6167 flavin biosynthesis II (archaea) TherJR_1782 PWY-6168 flavin biosynthesis III (fungi) TherJR_1782 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_1785 PWY-1861 formaldehyde assimilation II (RuMP Cycle) TherJR_1785 PWY-5723 Rubisco shunt TherJR_1806 PWY-5041 S-adenosyl-L-methionine cycle II TherJR_1806 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis TherJR_1809 PWY-7221 guanosine ribonucleotides de novo biosynthesis TherJR_1813 PWY-5097 L-lysine biosynthesis VI TherJR_1814 PWY-2941 L-lysine biosynthesis II TherJR_1814 PWY-5097 L-lysine biosynthesis VI TherJR_1826 PWY-5686 UMP biosynthesis TherJR_1827 PWY-5686 UMP biosynthesis TherJR_1830 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_1830 PWY-5686 UMP biosynthesis TherJR_1830 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_1831 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) TherJR_1831 PWY-5686 UMP biosynthesis TherJR_1831 PWY-7400 L-arginine biosynthesis IV (archaebacteria) TherJR_1832 PWY-5686 UMP biosynthesis TherJR_1833 PWY-5686 UMP biosynthesis TherJR_1834 PWY-7183 pyrimidine nucleobases salvage I TherJR_1847 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_1867 PWY-5663 tetrahydrobiopterin biosynthesis I TherJR_1867 PWY-5664 tetrahydrobiopterin biosynthesis II TherJR_1867 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_1867 PWY-6703 preQ0 biosynthesis TherJR_1867 PWY-6983 tetrahydrobiopterin biosynthesis III TherJR_1867 PWY-7442 drosopterin and aurodrosopterin biosynthesis TherJR_1913 PWY-6823 molybdenum cofactor biosynthesis TherJR_1913 PWY-6891 thiazole biosynthesis II (Bacillus) TherJR_1913 PWY-6892 thiazole biosynthesis I (E. coli) TherJR_1913 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis TherJR_1929 PWY-5381 pyridine nucleotide cycling (plants) TherJR_1929 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation TherJR_1929 PWY-6596 adenosine nucleotides degradation I TherJR_1929 PWY-6606 guanosine nucleotides degradation II TherJR_1929 PWY-6607 guanosine nucleotides degradation I TherJR_1929 PWY-6608 guanosine nucleotides degradation III TherJR_1929 PWY-7185 UTP and CTP dephosphorylation I TherJR_1931 PWY-5663 tetrahydrobiopterin biosynthesis I TherJR_1931 PWY-5664 tetrahydrobiopterin biosynthesis II TherJR_1931 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_1931 PWY-6703 preQ0 biosynthesis TherJR_1931 PWY-6983 tetrahydrobiopterin biosynthesis III TherJR_1931 PWY-7442 drosopterin and aurodrosopterin biosynthesis TherJR_1937 PWY-5372 carbon tetrachloride degradation II TherJR_1937 PWY-6780 hydrogen production VI TherJR_1957 PWY-5669 phosphatidylethanolamine biosynthesis I TherJR_1958 PWY-5669 phosphatidylethanolamine biosynthesis I TherJR_1964 PWY-5269 cardiolipin biosynthesis II TherJR_1964 PWY-5668 cardiolipin biosynthesis I TherJR_1985 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_2046 PWY-6829 tRNA methylation (yeast) TherJR_2046 PWY-7285 methylwyosine biosynthesis TherJR_2046 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis TherJR_2058 PWY-5041 S-adenosyl-L-methionine cycle II TherJR_2059 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation TherJR_2059 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II TherJR_2065 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II TherJR_2065 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I TherJR_2065 PWY-6269 adenosylcobalamin salvage from cobinamide II TherJR_2068 PWY-5839 menaquinol-7 biosynthesis TherJR_2068 PWY-5844 menaquinol-9 biosynthesis TherJR_2068 PWY-5849 menaquinol-6 biosynthesis TherJR_2068 PWY-5890 menaquinol-10 biosynthesis TherJR_2068 PWY-5891 menaquinol-11 biosynthesis TherJR_2068 PWY-5892 menaquinol-12 biosynthesis TherJR_2068 PWY-5895 menaquinol-13 biosynthesis TherJR_2072 PWY-723 alkylnitronates degradation TherJR_2074 PWY-5367 petroselinate biosynthesis TherJR_2074 PWY-5971 palmitate biosynthesis II (bacteria and plants) TherJR_2074 PWY-5973 cis-vaccenate biosynthesis TherJR_2074 PWY-5989 stearate biosynthesis II (bacteria and plants) TherJR_2074 PWY-5994 palmitate biosynthesis I (animals and fungi) TherJR_2074 PWY-6113 superpathway of mycolate biosynthesis TherJR_2074 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) TherJR_2074 PWY-6519 8-amino-7-oxononanoate biosynthesis I TherJR_2074 PWY-6951 TherJR_2074|TherJR_2074|YP_003640820.1|GeneID:9149765 TherJR_2074 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) TherJR_2074 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) TherJR_2074 PWYG-321 mycolate biosynthesis TherJR_2075 PWY-4381 fatty acid biosynthesis initiation I TherJR_2075 PWY-6799 fatty acid biosynthesis (plant mitochondria) TherJR_2075 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) TherJR_2076 PWY-723 alkylnitronates degradation TherJR_2077 PWY-4381 fatty acid biosynthesis initiation I TherJR_2082 PWY-1281 sulfoacetaldehyde degradation I TherJR_2082 PWY-5482 pyruvate fermentation to acetate II TherJR_2082 PWY-5485 pyruvate fermentation to acetate IV TherJR_2082 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_2082 PWY-6637 sulfolactate degradation II TherJR_2113 PWY-702 L-methionine biosynthesis II TherJR_2116 PWY-6683 sulfate reduction III (assimilatory) TherJR_2122 PWY-3341 L-proline biosynthesis III TherJR_2122 PWY-4981 L-proline biosynthesis II (from arginine) TherJR_2122 PWY-6344 L-ornithine degradation II (Stickland reaction) TherJR_2124 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) TherJR_2141 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II TherJR_2141 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II TherJR_2141 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II TherJR_2144 PWY-5372 carbon tetrachloride degradation II TherJR_2144 PWY-6780 hydrogen production VI TherJR_2157 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_2157 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_2158 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_2158 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_2159 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_2159 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_2160 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_2160 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) TherJR_2160 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_2160 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_2162 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_2162 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_2163 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_2163 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_2163 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_2164 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) TherJR_2164 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) TherJR_2177 PWY-7039 phosphatidate metabolism, as a signaling molecule TherJR_2178 PWY-6906 chitin derivatives degradation TherJR_2178 PWY-7077 N-acetyl-D-galactosamine degradation TherJR_2178 PWY-7395 D-galactosamine and N-acetyl-D-galactosamine degradation TherJR_2183 PWY-6749 CMP-legionaminate biosynthesis I TherJR_2184 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose) TherJR_2184 PWY-622 starch biosynthesis TherJR_2188 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type TherJR_2188 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2188 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type TherJR_2188 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type TherJR_2200 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_2200 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_2221 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_2226 PWY-5344 L-homocysteine biosynthesis TherJR_2226 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II TherJR_2229 PWY-6823 molybdenum cofactor biosynthesis TherJR_2243 PWY-6936 seleno-amino acid biosynthesis TherJR_2246 PWY-6683 sulfate reduction III (assimilatory) TherJR_2247 PWY-5278 sulfite oxidation III TherJR_2247 PWY-5340 sulfate activation for sulfonation TherJR_2247 PWY-6683 sulfate reduction III (assimilatory) TherJR_2247 PWY-6932 selenate reduction TherJR_2250 PWY-5340 sulfate activation for sulfonation TherJR_2255 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) TherJR_2255 PWY-6507 4-deoxy-L-threo-hex-4-enopyranuronate degradation TherJR_2255 PWY-7242 D-fructuronate degradation TherJR_2255 PWY-7310 D-glucosaminate degradation TherJR_2259 PWY-6167 flavin biosynthesis II (archaea) TherJR_2270 PWY-5344 L-homocysteine biosynthesis TherJR_2270 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II TherJR_2297 PWY-5663 tetrahydrobiopterin biosynthesis I TherJR_2297 PWY-5664 tetrahydrobiopterin biosynthesis II TherJR_2297 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I TherJR_2297 PWY-6703 preQ0 biosynthesis TherJR_2297 PWY-6983 tetrahydrobiopterin biosynthesis III TherJR_2297 PWY-7442 drosopterin and aurodrosopterin biosynthesis TherJR_2325 PWY-1042 glycolysis IV (plant cytosol) TherJR_2325 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) TherJR_2325 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2325 PWY-5723 Rubisco shunt TherJR_2325 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2325 PWY-6886 1-butanol autotrophic biosynthesis TherJR_2325 PWY-6901 superpathway of glucose and xylose degradation TherJR_2325 PWY-7003 glycerol degradation to butanol TherJR_2325 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) TherJR_2325 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) TherJR_2326 PWY-1042 glycolysis IV (plant cytosol) TherJR_2326 PWY-1861 formaldehyde assimilation II (RuMP Cycle) TherJR_2326 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2326 PWY-7385 1,3-propanediol biosynthesis (engineered) TherJR_2327 PWY-4381 fatty acid biosynthesis initiation I TherJR_2327 PWY-5743 3-hydroxypropanoate cycle TherJR_2327 PWY-5744 glyoxylate assimilation TherJR_2327 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle TherJR_2327 PWY-6679 jadomycin biosynthesis TherJR_2327 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) TherJR_2328 PWY-4381 fatty acid biosynthesis initiation I TherJR_2328 PWY-5743 3-hydroxypropanoate cycle TherJR_2328 PWY-5744 glyoxylate assimilation TherJR_2328 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle TherJR_2328 PWY-6679 jadomycin biosynthesis TherJR_2328 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) TherJR_2345 PWY-5964 guanylyl molybdenum cofactor biosynthesis TherJR_2349 PWY-1042 glycolysis IV (plant cytosol) TherJR_2349 PWY-1861 formaldehyde assimilation II (RuMP Cycle) TherJR_2349 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2349 PWY-7385 1,3-propanediol biosynthesis (engineered) TherJR_2362 PWY-622 starch biosynthesis TherJR_2367 PWY-622 starch biosynthesis TherJR_2400 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type TherJR_2400 PWY-6549 L-glutamine biosynthesis III TherJR_2400 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type TherJR_2400 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type TherJR_2408 PWY-1341 phenylacetate degradation II (anaerobic) TherJR_2408 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) TherJR_2411 PWY-1361 benzoyl-CoA degradation I (aerobic) TherJR_2411 PWY-5109 2-methylbutanoate biosynthesis TherJR_2411 PWY-5136 fatty acid β-oxidation II (peroxisome) TherJR_2411 PWY-5138 unsaturated, even numbered fatty acid β-oxidation TherJR_2411 PWY-5177 glutaryl-CoA degradation TherJR_2411 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle TherJR_2411 PWY-6435 4-hydroxybenzoate biosynthesis V TherJR_2411 PWY-6583 pyruvate fermentation to butanol I TherJR_2411 PWY-6863 pyruvate fermentation to hexanol TherJR_2411 PWY-6883 pyruvate fermentation to butanol II TherJR_2411 PWY-6944 androstenedione degradation TherJR_2411 PWY-6945 cholesterol degradation to androstenedione I (cholesterol oxidase) TherJR_2411 PWY-6946 cholesterol degradation to androstenedione II (cholesterol dehydrogenase) TherJR_2411 PWY-7007 methyl ketone biosynthesis TherJR_2411 PWY-7046 4-coumarate degradation (anaerobic) TherJR_2411 PWY-7094 fatty acid salvage TherJR_2411 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis TherJR_2411 PWY-735 jasmonic acid biosynthesis TherJR_2411 PWY-7401 crotonate fermentation (to acetate and cyclohexane carboxylate) TherJR_2412 PWY-5667 CDP-diacylglycerol biosynthesis I TherJR_2412 PWY-5981 CDP-diacylglycerol biosynthesis III TherJR_2419 PWY-6556 pyrimidine ribonucleosides salvage II TherJR_2419 PWY-7181 pyrimidine deoxyribonucleosides degradation TherJR_2419 PWY-7193 pyrimidine ribonucleosides salvage I TherJR_2419 PWY-7199 pyrimidine deoxyribonucleosides salvage TherJR_2503 PWY-6683 sulfate reduction III (assimilatory) TherJR_2505 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_2505 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_2515 PWY-5381 pyridine nucleotide cycling (plants) TherJR_2515 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde TherJR_2555 PWY-2161 folate polyglutamylation TherJR_2566 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation TherJR_2595 PWY-5674 nitrate reduction IV (dissimilatory) TherJR_2613 PWY-2201 folate transformations I TherJR_2613 PWY-3841 folate transformations II TherJR_2618 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_2618 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_2627 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) TherJR_2627 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) TherJR_2647 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) TherJR_2647 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) TherJR_2661 PWY-2201 folate transformations I TherJR_2661 PWY-3841 folate transformations II TherJR_2670 PWY-7180 2'-deoxy-α-D-ribose 1-phosphate degradation TherJR_2671 PWY-3801 sucrose degradation II (sucrose synthase) TherJR_2671 PWY-6527 stachyose degradation TherJR_2671 PWY-6981 chitin biosynthesis TherJR_2671 PWY-7238 sucrose biosynthesis II TherJR_2671 PWY-7343 UDP-glucose biosynthesis TherJR_2675 PWY-5941 glycogen degradation II (eukaryotic) TherJR_2675 PWY-6724 starch degradation II TherJR_2675 PWY-6737 starch degradation V TherJR_2675 PWY-7238 sucrose biosynthesis II TherJR_2707 PWY-1042 glycolysis IV (plant cytosol) TherJR_2707 PWY-1622 formaldehyde assimilation I (serine pathway) TherJR_2707 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) TherJR_2707 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2707 PWY-5723 Rubisco shunt TherJR_2707 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2707 PWY-6886 1-butanol autotrophic biosynthesis TherJR_2707 PWY-6901 superpathway of glucose and xylose degradation TherJR_2707 PWY-7003 glycerol degradation to butanol TherJR_2707 PWY-7124 ethylene biosynthesis V (engineered) TherJR_2707 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) TherJR_2708 PWY-1042 glycolysis IV (plant cytosol) TherJR_2708 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) TherJR_2708 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2708 PWY-5723 Rubisco shunt TherJR_2708 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2708 PWY-6886 1-butanol autotrophic biosynthesis TherJR_2708 PWY-6901 superpathway of glucose and xylose degradation TherJR_2708 PWY-7003 glycerol degradation to butanol TherJR_2708 PWY-7124 ethylene biosynthesis V (engineered) TherJR_2708 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) TherJR_2709 PWY-1042 glycolysis IV (plant cytosol) TherJR_2709 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2709 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2709 PWY-7003 glycerol degradation to butanol TherJR_2710 PWY-1042 glycolysis IV (plant cytosol) TherJR_2710 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2710 PWY-6886 1-butanol autotrophic biosynthesis TherJR_2710 PWY-6901 superpathway of glucose and xylose degradation TherJR_2710 PWY-7003 glycerol degradation to butanol TherJR_2711 PWY-1042 glycolysis IV (plant cytosol) TherJR_2711 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2711 PWY-6901 superpathway of glucose and xylose degradation TherJR_2711 PWY-7003 glycerol degradation to butanol TherJR_2723 PWY-3801 sucrose degradation II (sucrose synthase) TherJR_2723 PWY-3861 mannitol degradation II TherJR_2723 PWY-3881 mannitol biosynthesis TherJR_2723 PWY-5054 sorbitol biosynthesis I TherJR_2723 PWY-5384 sucrose degradation IV (sucrose phosphorylase) TherJR_2723 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II TherJR_2723 PWY-5659 GDP-mannose biosynthesis TherJR_2723 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2723 PWY-621 sucrose degradation III (sucrose invertase) TherJR_2723 PWY-622 starch biosynthesis TherJR_2723 PWY-6531 mannitol cycle TherJR_2723 PWY-6981 chitin biosynthesis TherJR_2723 PWY-7238 sucrose biosynthesis II TherJR_2723 PWY-7347 sucrose biosynthesis III TherJR_2723 PWY-7385 1,3-propanediol biosynthesis (engineered) TherJR_2723 PWY-7456 mannan degradation TherJR_2723 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) TherJR_2724 PWY-5941 glycogen degradation II (eukaryotic) TherJR_2724 PWY-6724 starch degradation II TherJR_2724 PWY-6737 starch degradation V TherJR_2724 PWY-7238 sucrose biosynthesis II TherJR_2726 PWY-6784 cellulose and hemicellulose degradation (cellulolosome) TherJR_2730 PWY-1281 sulfoacetaldehyde degradation I TherJR_2730 PWY-5482 pyruvate fermentation to acetate II TherJR_2730 PWY-5485 pyruvate fermentation to acetate IV TherJR_2730 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_2730 PWY-6637 sulfolactate degradation II TherJR_2765 PWY-6891 thiazole biosynthesis II (Bacillus) TherJR_2765 PWY-6892 thiazole biosynthesis I (E. coli) TherJR_2765 PWY-7560 methylerythritol phosphate pathway II TherJR_2780 PWY-6749 CMP-legionaminate biosynthesis I TherJR_2780 PWY-7131 CMP-legionaminate biosynthesis II TherJR_2784 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I TherJR_2784 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) TherJR_2819 PWY-6749 CMP-legionaminate biosynthesis I TherJR_2821 PWY-5265 peptidoglycan biosynthesis II (staphylococci) TherJR_2821 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) TherJR_2821 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) TherJR_2822 PWY-5971 palmitate biosynthesis II (bacteria and plants) TherJR_2822 PWY-5973 cis-vaccenate biosynthesis TherJR_2822 PWY-5989 stearate biosynthesis II (bacteria and plants) TherJR_2822 PWY-5994 palmitate biosynthesis I (animals and fungi) TherJR_2822 PWY-6113 superpathway of mycolate biosynthesis TherJR_2822 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) TherJR_2822 PWY-6519 8-amino-7-oxononanoate biosynthesis I TherJR_2822 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) TherJR_2822 PWYG-321 mycolate biosynthesis TherJR_2830 PWY-5659 GDP-mannose biosynthesis TherJR_2830 PWY-6073 alginate biosynthesis I (algal) TherJR_2830 PWY-6082 alginate biosynthesis II (bacterial) TherJR_2830 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) TherJR_2840 PWY-6655 xanthan biosynthesis TherJR_2840 PWY-6658 acetan biosynthesis TherJR_2887 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_2889 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_2896 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis TherJR_2897 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP TherJR_2898 PWY-1622 formaldehyde assimilation I (serine pathway) TherJR_2898 PWY-181 photorespiration TherJR_2898 PWY-2161 folate polyglutamylation TherJR_2898 PWY-2201 folate transformations I TherJR_2898 PWY-3661 glycine betaine degradation I TherJR_2898 PWY-3661-1 glycine betaine degradation II (mammalian) TherJR_2898 PWY-3841 folate transformations II TherJR_2898 PWY-5497 purine nucleobases degradation II (anaerobic) TherJR_2912 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_2914 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2915 PWY-1861 formaldehyde assimilation II (RuMP Cycle) TherJR_2915 PWY-5723 Rubisco shunt TherJR_2917 PWY-1042 glycolysis IV (plant cytosol) TherJR_2917 PWY-1861 formaldehyde assimilation II (RuMP Cycle) TherJR_2917 PWY-5484 glycolysis II (from fructose 6-phosphate) TherJR_2917 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) TherJR_2917 PWY-7385 1,3-propanediol biosynthesis (engineered) TherJR_2922 PWY-7176 UTP and CTP de novo biosynthesis TherJR_2922 PWY-7177 UTP and CTP dephosphorylation II TherJR_2922 PWY-7185 UTP and CTP dephosphorylation I TherJR_2928 PWY-1341 phenylacetate degradation II (anaerobic) TherJR_2928 PWY-6318 L-phenylalanine degradation IV (mammalian, via side chain) TherJR_2945 PWY-5250 methanogenesis from trimethylamine TherJR_2953 PWY-6823 molybdenum cofactor biosynthesis TherJR_2959 PWY-5372 carbon tetrachloride degradation II TherJR_2959 PWY-6780 hydrogen production VI TherJR_2970 PWY-5958 acridone alkaloid biosynthesis TherJR_2970 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis TherJR_2970 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis TherJR_2971 PWY-7219 adenosine ribonucleotides de novo biosynthesis TherJR_3003 PWY-6823 molybdenum cofactor biosynthesis TherJR_3003 PWY-6891 thiazole biosynthesis II (Bacillus) TherJR_3003 PWY-6892 thiazole biosynthesis I (E. coli) TherJR_3003 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis TherJR_3005 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II TherJR_3006 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II