Tmath_0030	PWY-5101	L-isoleucine biosynthesis II
Tmath_0030	PWY-5103	L-isoleucine biosynthesis III
Tmath_0030	PWY-5104	L-isoleucine biosynthesis IV
Tmath_0030	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Tmath_0030	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Tmath_0030	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Tmath_0030	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tmath_0031	PWY-5101	L-isoleucine biosynthesis II
Tmath_0031	PWY-5103	L-isoleucine biosynthesis III
Tmath_0031	PWY-5104	L-isoleucine biosynthesis IV
Tmath_0031	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tmath_0032	PWY-6871	3-methylbutanol biosynthesis
Tmath_0035	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Tmath_0036	PWY-5101	L-isoleucine biosynthesis II
Tmath_0036	PWY-5103	L-isoleucine biosynthesis III
Tmath_0036	PWY-5104	L-isoleucine biosynthesis IV
Tmath_0036	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tmath_0037	PWY-5101	L-isoleucine biosynthesis II
Tmath_0037	PWY-5103	L-isoleucine biosynthesis III
Tmath_0037	PWY-5104	L-isoleucine biosynthesis IV
Tmath_0037	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Tmath_0037	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Tmath_0037	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Tmath_0037	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tmath_0039	PWY-6167	flavin biosynthesis II (archaea)
Tmath_0039	PWY-6168	flavin biosynthesis III (fungi)
Tmath_0039	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0040	PWY-6167	flavin biosynthesis II (archaea)
Tmath_0040	PWY-6168	flavin biosynthesis III (fungi)
Tmath_0040	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tmath_0041	PWY-6167	flavin biosynthesis II (archaea)
Tmath_0041	PWY-6168	flavin biosynthesis III (fungi)
Tmath_0045	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Tmath_0117	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_0117	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_0132	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_0132	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_0139	PWY-2723	trehalose degradation V
Tmath_0139	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tmath_0139	PWY-5661	GDP-glucose biosynthesis
Tmath_0139	PWY-7238	sucrose biosynthesis II
Tmath_0139	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tmath_0143	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tmath_0143	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_0143	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_0143	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tmath_0143	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tmath_0143	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tmath_0148	PWY-4981	L-proline biosynthesis II (from arginine)
Tmath_0177	PWY-1042	glycolysis IV (plant cytosol)
Tmath_0177	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tmath_0177	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_0177	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_0177	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tmath_0178	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0180	PWY-7199	pyrimidine deoxyribonucleosides salvage
Tmath_0187	PWY-7183	pyrimidine nucleobases salvage I
Tmath_0188	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tmath_0189	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_0189	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tmath_0189	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_0190	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Tmath_0193	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_0193	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_0203	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tmath_0203	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tmath_0203	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tmath_0203	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tmath_0203	PWY-6113	superpathway of mycolate biosynthesis
Tmath_0203	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tmath_0203	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tmath_0203	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tmath_0203	PWYG-321	mycolate biosynthesis
Tmath_0212	PWY-7310	D-glucosaminate degradation
Tmath_0219	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_0219	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tmath_0219	PWY-7242	D-fructuronate degradation
Tmath_0219	PWY-7310	D-glucosaminate degradation
Tmath_0225	PWY-7310	D-glucosaminate degradation
Tmath_0227	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_0227	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tmath_0227	PWY-7242	D-fructuronate degradation
Tmath_0227	PWY-7310	D-glucosaminate degradation
Tmath_0234	PWY-4261	glycerol degradation I
Tmath_0237	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Tmath_0237	PWY-7248	pectin degradation III
Tmath_0238	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_0238	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tmath_0238	PWY-7242	D-fructuronate degradation
Tmath_0238	PWY-7310	D-glucosaminate degradation
Tmath_0241	PWY-7242	D-fructuronate degradation
Tmath_0246	PWY-6807	xyloglucan degradation II (exoglucanase)
Tmath_0247	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Tmath_0251	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Tmath_0287	PWY-6906	chitin derivatives degradation
Tmath_0287	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Tmath_0287	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Tmath_0315	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_0315	PWY-6527	stachyose degradation
Tmath_0317	PWY-622	starch biosynthesis
Tmath_0320	PWY-5481	pyruvate fermentation to lactate
Tmath_0320	PWY-6901	superpathway of glucose and xylose degradation
Tmath_0336	PWY-6984	lipoate salvage II
Tmath_0336	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tmath_0336	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tmath_0337	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Tmath_0337	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Tmath_0341	PWY-7310	D-glucosaminate degradation
Tmath_0343	PWY-7310	D-glucosaminate degradation
Tmath_0344	PWY-5686	UMP biosynthesis
Tmath_0345	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
Tmath_0364	PWY-6019	pseudouridine degradation
Tmath_0369	PWY-7310	D-glucosaminate degradation
Tmath_0371	PWY-7310	D-glucosaminate degradation
Tmath_0375	PWY-7310	D-glucosaminate degradation
Tmath_0376	PWY-7310	D-glucosaminate degradation
Tmath_0389	PWY-6807	xyloglucan degradation II (exoglucanase)
Tmath_0390	PWY-3121	linamarin degradation
Tmath_0390	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Tmath_0390	PWY-6002	lotaustralin degradation
Tmath_0390	PWY-6788	cellulose degradation II (fungi)
Tmath_0390	PWY-7089	taxiphyllin bioactivation
Tmath_0390	PWY-7091	linustatin bioactivation
Tmath_0390	PWY-7092	neolinustatin bioactivation
Tmath_0399	PWY-6683	sulfate reduction III (assimilatory)
Tmath_0417	PWY-5443	aminopropanol phosphate biosynthesis I
Tmath_0418	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tmath_0418	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tmath_0418	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tmath_0419	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tmath_0419	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tmath_0419	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tmath_0420	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0422	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0424	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0426	PWY-5194	siroheme biosynthesis
Tmath_0426	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0427	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0430	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0431	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0431	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tmath_0432	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0432	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tmath_0432	PWY-5194	siroheme biosynthesis
Tmath_0432	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0433	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0433	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tmath_0434	PWY-5194	siroheme biosynthesis
Tmath_0434	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tmath_0437	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0443	PWY-5913	TCA cycle VI (obligate autotrophs)
Tmath_0443	PWY-6549	L-glutamine biosynthesis III
Tmath_0443	PWY-6728	methylaspartate cycle
Tmath_0443	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tmath_0443	PWY-7124	ethylene biosynthesis V (engineered)
Tmath_0443	PWY-7254	TCA cycle VII (acetate-producers)
Tmath_0443	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tmath_0452	PWY-6823	molybdenum cofactor biosynthesis
Tmath_0502	PWY-5030	L-histidine degradation III
Tmath_0511	PWY-5030	L-histidine degradation III
Tmath_0511	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_0519	PWY-6556	pyrimidine ribonucleosides salvage II
Tmath_0519	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tmath_0519	PWY-7193	pyrimidine ribonucleosides salvage I
Tmath_0519	PWY-7199	pyrimidine deoxyribonucleosides salvage
Tmath_0520	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tmath_0521	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tmath_0524	PWY-7310	D-glucosaminate degradation
Tmath_0527	PWY-3081	L-lysine biosynthesis V
Tmath_0527	PWY-6871	3-methylbutanol biosynthesis
Tmath_0531	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tmath_0531	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tmath_0531	PWY-6897	thiamin salvage II
Tmath_0531	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tmath_0531	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tmath_0531	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tmath_0531	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tmath_0536	PWY-5155	&beta;-alanine biosynthesis III
Tmath_0538	PWY-6654	phosphopantothenate biosynthesis III
Tmath_0540	PWY-6829	tRNA methylation (yeast)
Tmath_0555	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Tmath_0555	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Tmath_0595	PWY-4981	L-proline biosynthesis II (from arginine)
Tmath_0595	PWY-4984	urea cycle
Tmath_0595	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_0614	PWY-101	photosynthesis light reactions
Tmath_0614	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Tmath_0626	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tmath_0626	PWY-6596	adenosine nucleotides degradation I
Tmath_0626	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0627	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0629	PWY-6123	inosine-5'-phosphate biosynthesis I
Tmath_0629	PWY-7234	inosine-5'-phosphate biosynthesis III
Tmath_0630	PWY-6123	inosine-5'-phosphate biosynthesis I
Tmath_0630	PWY-6124	inosine-5'-phosphate biosynthesis II
Tmath_0630	PWY-7234	inosine-5'-phosphate biosynthesis III
Tmath_0631	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0631	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0631	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0632	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0632	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0632	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0633	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0633	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0633	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0634	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0634	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0634	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0634	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tmath_0635	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0635	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0635	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0636	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0636	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tmath_0637	PWY-6123	inosine-5'-phosphate biosynthesis I
Tmath_0637	PWY-6124	inosine-5'-phosphate biosynthesis II
Tmath_0637	PWY-7234	inosine-5'-phosphate biosynthesis III
Tmath_0638	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tmath_0638	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tmath_0638	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tmath_0639	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_0639	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_0642	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tmath_0643	PWY-7310	D-glucosaminate degradation
Tmath_0645	PWY-7310	D-glucosaminate degradation
Tmath_0646	PWY-7310	D-glucosaminate degradation
Tmath_0652	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Tmath_0657	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Tmath_0663	PWY-7310	D-glucosaminate degradation
Tmath_0664	PWY-7310	D-glucosaminate degradation
Tmath_0666	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tmath_0666	PWY-5723	Rubisco shunt
Tmath_0670	PWY-6910	hydroxymethylpyrimidine salvage
Tmath_0670	PWY-7356	thiamin salvage IV (yeast)
Tmath_0670	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tmath_0671	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tmath_0671	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tmath_0671	PWY-6897	thiamin salvage II
Tmath_0671	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tmath_0671	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tmath_0671	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tmath_0671	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tmath_0672	PWY-6897	thiamin salvage II
Tmath_0672	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tmath_0672	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tmath_0674	PWY-6897	thiamin salvage II
Tmath_0674	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tmath_0674	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tmath_0695	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0697	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0700	PWY-5381	pyridine nucleotide cycling (plants)
Tmath_0700	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tmath_0716	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tmath_0716	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Tmath_0718	PWY-6143	CMP-pseudaminate biosynthesis
Tmath_0719	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_0719	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tmath_0719	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tmath_0719	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_0724	PWY-5659	GDP-mannose biosynthesis
Tmath_0724	PWY-6073	alginate biosynthesis I (algal)
Tmath_0724	PWY-6082	alginate biosynthesis II (bacterial)
Tmath_0724	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Tmath_0765	PWY-6749	CMP-legionaminate biosynthesis I
Tmath_0766	PWY-3801	sucrose degradation II (sucrose synthase)
Tmath_0766	PWY-6527	stachyose degradation
Tmath_0766	PWY-6981	chitin biosynthesis
Tmath_0766	PWY-7238	sucrose biosynthesis II
Tmath_0766	PWY-7343	UDP-glucose biosynthesis
Tmath_0771	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tmath_0771	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tmath_0771	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_0771	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_0771	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tmath_0771	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tmath_0771	PWY-7205	CMP phosphorylation
Tmath_0771	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tmath_0771	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_0771	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_0771	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_0771	PWY-7224	purine deoxyribonucleosides salvage
Tmath_0771	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_0771	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tmath_0777	PWY-5269	cardiolipin biosynthesis II
Tmath_0777	PWY-5668	cardiolipin biosynthesis I
Tmath_0789	PWY-2161	folate polyglutamylation
Tmath_0800	PWY-2721	trehalose degradation III
Tmath_0800	PWY-2722	trehalose degradation IV
Tmath_0800	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_0800	PWY-7459	kojibiose degradation
Tmath_0812	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tmath_0812	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tmath_0812	PWY-6268	adenosylcobalamin salvage from cobalamin
Tmath_0812	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tmath_0813	PWY-2941	L-lysine biosynthesis II
Tmath_0814	PWY-2941	L-lysine biosynthesis II
Tmath_0814	PWY-2942	L-lysine biosynthesis III
Tmath_0814	PWY-5097	L-lysine biosynthesis VI
Tmath_0815	PWY-2941	L-lysine biosynthesis II
Tmath_0815	PWY-2942	L-lysine biosynthesis III
Tmath_0815	PWY-5097	L-lysine biosynthesis VI
Tmath_0816	PWY-2941	L-lysine biosynthesis II
Tmath_0816	PWY-2942	L-lysine biosynthesis III
Tmath_0816	PWY-5097	L-lysine biosynthesis VI
Tmath_0816	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_0816	PWY-6559	spermidine biosynthesis II
Tmath_0816	PWY-6562	norspermidine biosynthesis
Tmath_0816	PWY-7153	grixazone biosynthesis
Tmath_0816	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_0821	PWY-381	nitrate reduction II (assimilatory)
Tmath_0821	PWY-5675	nitrate reduction V (assimilatory)
Tmath_0821	PWY-6549	L-glutamine biosynthesis III
Tmath_0821	PWY-6963	ammonia assimilation cycle I
Tmath_0821	PWY-6964	ammonia assimilation cycle II
Tmath_0836	PWY-6854	ethylene biosynthesis III (microbes)
Tmath_0853	PWY-5381	pyridine nucleotide cycling (plants)
Tmath_0860	PWY-1281	sulfoacetaldehyde degradation I
Tmath_0860	PWY-5482	pyruvate fermentation to acetate II
Tmath_0860	PWY-5485	pyruvate fermentation to acetate IV
Tmath_0860	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_0860	PWY-6637	sulfolactate degradation II
Tmath_0863	PWY-1281	sulfoacetaldehyde degradation I
Tmath_0863	PWY-5482	pyruvate fermentation to acetate II
Tmath_0863	PWY-5485	pyruvate fermentation to acetate IV
Tmath_0863	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_0863	PWY-6637	sulfolactate degradation II
Tmath_0887	PWY-6700	queuosine biosynthesis
Tmath_0898	PWY-5381	pyridine nucleotide cycling (plants)
Tmath_0898	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tmath_0903	PWY-5667	CDP-diacylglycerol biosynthesis I
Tmath_0903	PWY-5981	CDP-diacylglycerol biosynthesis III
Tmath_0906	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_0906	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_0910	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_0914	PWY-5057	L-valine degradation II
Tmath_0914	PWY-5076	L-leucine degradation III
Tmath_0914	PWY-5078	L-isoleucine degradation II
Tmath_0914	PWY-5101	L-isoleucine biosynthesis II
Tmath_0914	PWY-5103	L-isoleucine biosynthesis III
Tmath_0914	PWY-5104	L-isoleucine biosynthesis IV
Tmath_0914	PWY-5108	L-isoleucine biosynthesis V
Tmath_0949	PWY-3801	sucrose degradation II (sucrose synthase)
Tmath_0949	PWY-6527	stachyose degradation
Tmath_0949	PWY-6981	chitin biosynthesis
Tmath_0949	PWY-7238	sucrose biosynthesis II
Tmath_0949	PWY-7343	UDP-glucose biosynthesis
Tmath_0964	PWY-7039	phosphatidate metabolism, as a signaling molecule
Tmath_0966	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tmath_0972	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tmath_0972	PWY-6549	L-glutamine biosynthesis III
Tmath_0972	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tmath_0972	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tmath_1020	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tmath_1021	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Tmath_1021	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Tmath_1026	PWY-6164	3-dehydroquinate biosynthesis I
Tmath_1027	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Tmath_1028	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tmath_1028	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Tmath_1028	PWY-6164	3-dehydroquinate biosynthesis I
Tmath_1029	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
Tmath_1030	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1041	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tmath_1041	PWY-6855	chitin degradation I (archaea)
Tmath_1041	PWY-6906	chitin derivatives degradation
Tmath_1046	PWY-2201	folate transformations I
Tmath_1046	PWY-3841	folate transformations II
Tmath_1057	PWY-6936	seleno-amino acid biosynthesis
Tmath_1066	PWY-6700	queuosine biosynthesis
Tmath_1067	PWY-6700	queuosine biosynthesis
Tmath_1071	PWY-6823	molybdenum cofactor biosynthesis
Tmath_1077	PWY-6605	adenine and adenosine salvage II
Tmath_1077	PWY-6610	adenine and adenosine salvage IV
Tmath_1092	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tmath_1110	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1124	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1128	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1128	PWY-6416	quinate degradation II
Tmath_1128	PWY-6707	gallate biosynthesis
Tmath_1142	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Tmath_1142	PWY-2201	folate transformations I
Tmath_1142	PWY-3841	folate transformations II
Tmath_1142	PWY-5030	L-histidine degradation III
Tmath_1142	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1142	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tmath_1147	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_1147	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_1147	PWY-7560	methylerythritol phosphate pathway II
Tmath_1149	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Tmath_1149	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tmath_1149	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Tmath_1154	PWY-6898	thiamin salvage III
Tmath_1154	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tmath_1154	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tmath_1157	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_1157	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tmath_1157	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_1164	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_1164	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_1179	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_1179	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_1185	PWY-40	putrescine biosynthesis I
Tmath_1185	PWY-6305	putrescine biosynthesis IV
Tmath_1189	PWY-5381	pyridine nucleotide cycling (plants)
Tmath_1189	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tmath_1189	PWY-6596	adenosine nucleotides degradation I
Tmath_1189	PWY-6606	guanosine nucleotides degradation II
Tmath_1189	PWY-6607	guanosine nucleotides degradation I
Tmath_1189	PWY-6608	guanosine nucleotides degradation III
Tmath_1189	PWY-7185	UTP and CTP dephosphorylation I
Tmath_1197	PWY-3461	L-tyrosine biosynthesis II
Tmath_1197	PWY-3462	L-phenylalanine biosynthesis II
Tmath_1197	PWY-6120	L-tyrosine biosynthesis III
Tmath_1197	PWY-6627	salinosporamide A biosynthesis
Tmath_1198	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1198	PWY-7205	CMP phosphorylation
Tmath_1199	PWY-5667	CDP-diacylglycerol biosynthesis I
Tmath_1199	PWY-5981	CDP-diacylglycerol biosynthesis III
Tmath_1199	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
Tmath_1199	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
Tmath_1200	PWY-7560	methylerythritol phosphate pathway II
Tmath_1201	PWY-6834	spermidine biosynthesis III
Tmath_1206	PWY-2781	<i>cis</i>-zeatin biosynthesis
Tmath_1208	PWY-3341	L-proline biosynthesis III
Tmath_1208	PWY-4981	L-proline biosynthesis II (from arginine)
Tmath_1208	PWY-6344	L-ornithine degradation II (Stickland reaction)
Tmath_1213	PWY-6123	inosine-5'-phosphate biosynthesis I
Tmath_1213	PWY-6124	inosine-5'-phosphate biosynthesis II
Tmath_1213	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_1213	PWY-7234	inosine-5'-phosphate biosynthesis III
Tmath_1222	PWY-5269	cardiolipin biosynthesis II
Tmath_1222	PWY-5668	cardiolipin biosynthesis I
Tmath_1227	PWY-2941	L-lysine biosynthesis II
Tmath_1227	PWY-2942	L-lysine biosynthesis III
Tmath_1227	PWY-5097	L-lysine biosynthesis VI
Tmath_1227	PWY-6559	spermidine biosynthesis II
Tmath_1227	PWY-6562	norspermidine biosynthesis
Tmath_1227	PWY-7153	grixazone biosynthesis
Tmath_1229	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tmath_1229	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_1229	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1229	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Tmath_1234	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Tmath_1234	PWY-6167	flavin biosynthesis II (archaea)
Tmath_1234	PWY-6168	flavin biosynthesis III (fungi)
Tmath_1245	PWY-7560	methylerythritol phosphate pathway II
Tmath_1247	PWY-7560	methylerythritol phosphate pathway II
Tmath_1283	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_1302	PWY-6829	tRNA methylation (yeast)
Tmath_1302	PWY-7285	methylwyosine biosynthesis
Tmath_1302	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Tmath_1315	PWY-5198	factor 420 biosynthesis
Tmath_1315	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tmath_1325	PWY-381	nitrate reduction II (assimilatory)
Tmath_1325	PWY-5675	nitrate reduction V (assimilatory)
Tmath_1325	PWY-6549	L-glutamine biosynthesis III
Tmath_1325	PWY-6963	ammonia assimilation cycle I
Tmath_1325	PWY-6964	ammonia assimilation cycle II
Tmath_1330	PWY-5367	petroselinate biosynthesis
Tmath_1330	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tmath_1330	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tmath_1330	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tmath_1330	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tmath_1330	PWY-6113	superpathway of mycolate biosynthesis
Tmath_1330	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tmath_1330	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tmath_1330	PWY-6951	Tmath_1330|Tmath_1330|YP_003677055.1|GeneID:9242828
Tmath_1330	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Tmath_1330	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tmath_1330	PWYG-321	mycolate biosynthesis
Tmath_1331	PWY-4381	fatty acid biosynthesis initiation I
Tmath_1331	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Tmath_1331	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tmath_1332	PWY-723	alkylnitronates degradation
Tmath_1333	PWY-4381	fatty acid biosynthesis initiation I
Tmath_1338	PWY-5482	pyruvate fermentation to acetate II
Tmath_1338	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1338	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1339	PWY-1281	sulfoacetaldehyde degradation I
Tmath_1339	PWY-5482	pyruvate fermentation to acetate II
Tmath_1339	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1339	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1339	PWY-6637	sulfolactate degradation II
Tmath_1353	PWY-6898	thiamin salvage III
Tmath_1353	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tmath_1353	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tmath_1354	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tmath_1354	PWY-5723	Rubisco shunt
Tmath_1367	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_1370	PWY-2941	L-lysine biosynthesis II
Tmath_1370	PWY-5097	L-lysine biosynthesis VI
Tmath_1382	PWY-5686	UMP biosynthesis
Tmath_1385	PWY-5686	UMP biosynthesis
Tmath_1386	PWY-5686	UMP biosynthesis
Tmath_1387	PWY-5686	UMP biosynthesis
Tmath_1388	PWY-7183	pyrimidine nucleobases salvage I
Tmath_1416	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tmath_1416	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Tmath_1416	PWY-6164	3-dehydroquinate biosynthesis I
Tmath_1422	PWY-5958	acridone alkaloid biosynthesis
Tmath_1422	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tmath_1422	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tmath_1423	PWY-5958	acridone alkaloid biosynthesis
Tmath_1423	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tmath_1423	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tmath_1427	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
Tmath_1427	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Tmath_1438	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tmath_1445	PWY-5667	CDP-diacylglycerol biosynthesis I
Tmath_1445	PWY-5981	CDP-diacylglycerol biosynthesis III
Tmath_1472	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_1472	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_1473	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_1473	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tmath_1473	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tmath_1473	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_1475	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_1475	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_1476	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tmath_1476	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tmath_1476	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tmath_1477	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_1477	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_1489	PWY-6823	molybdenum cofactor biosynthesis
Tmath_1489	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_1489	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_1489	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tmath_1493	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tmath_1493	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tmath_1493	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
Tmath_1494	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tmath_1494	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tmath_1495	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Tmath_1495	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Tmath_1528	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tmath_1550	PWY-3861	mannitol degradation II
Tmath_1550	PWY-3881	mannitol biosynthesis
Tmath_1550	PWY-5659	GDP-mannose biosynthesis
Tmath_1550	PWY-7456	mannan degradation
Tmath_1550	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Tmath_1551	PWY-4202	arsenate detoxification I (glutaredoxin)
Tmath_1551	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tmath_1551	PWY-6608	guanosine nucleotides degradation III
Tmath_1551	PWY-6609	adenine and adenosine salvage III
Tmath_1551	PWY-6611	adenine and adenosine salvage V
Tmath_1551	PWY-6620	guanine and guanosine salvage
Tmath_1551	PWY-6627	salinosporamide A biosynthesis
Tmath_1551	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Tmath_1551	PWY-7179	purine deoxyribonucleosides degradation I
Tmath_1551	PWY-7179-1	purine deoxyribonucleosides degradation
Tmath_1552	PWY-5663	tetrahydrobiopterin biosynthesis I
Tmath_1552	PWY-5664	tetrahydrobiopterin biosynthesis II
Tmath_1552	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tmath_1552	PWY-6703	preQ<sub>0</sub> biosynthesis
Tmath_1552	PWY-6983	tetrahydrobiopterin biosynthesis III
Tmath_1552	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tmath_1558	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1558	PWY-1622	formaldehyde assimilation I (serine pathway)
Tmath_1558	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_1558	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1558	PWY-5723	Rubisco shunt
Tmath_1558	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_1558	PWY-6886	1-butanol autotrophic biosynthesis
Tmath_1558	PWY-6901	superpathway of glucose and xylose degradation
Tmath_1558	PWY-7003	glycerol degradation to butanol
Tmath_1558	PWY-7124	ethylene biosynthesis V (engineered)
Tmath_1558	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tmath_1559	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1559	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_1559	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1559	PWY-5723	Rubisco shunt
Tmath_1559	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_1559	PWY-6886	1-butanol autotrophic biosynthesis
Tmath_1559	PWY-6901	superpathway of glucose and xylose degradation
Tmath_1559	PWY-7003	glycerol degradation to butanol
Tmath_1559	PWY-7124	ethylene biosynthesis V (engineered)
Tmath_1559	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tmath_1560	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1560	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1560	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_1560	PWY-7003	glycerol degradation to butanol
Tmath_1561	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1561	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1561	PWY-6886	1-butanol autotrophic biosynthesis
Tmath_1561	PWY-6901	superpathway of glucose and xylose degradation
Tmath_1561	PWY-7003	glycerol degradation to butanol
Tmath_1562	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1562	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1562	PWY-6901	superpathway of glucose and xylose degradation
Tmath_1562	PWY-7003	glycerol degradation to butanol
Tmath_1592	PWY-2201	folate transformations I
Tmath_1592	PWY-3841	folate transformations II
Tmath_1593	PWY-5941	glycogen degradation II (eukaryotic)
Tmath_1593	PWY-622	starch biosynthesis
Tmath_1593	PWY-6731	starch degradation III
Tmath_1593	PWY-6737	starch degradation V
Tmath_1593	PWY-7238	sucrose biosynthesis II
Tmath_1594	PWY-3801	sucrose degradation II (sucrose synthase)
Tmath_1594	PWY-5054	sorbitol biosynthesis I
Tmath_1594	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Tmath_1594	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tmath_1594	PWY-5659	GDP-mannose biosynthesis
Tmath_1594	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_1594	PWY-621	sucrose degradation III (sucrose invertase)
Tmath_1594	PWY-622	starch biosynthesis
Tmath_1594	PWY-6531	mannitol cycle
Tmath_1594	PWY-6981	chitin biosynthesis
Tmath_1594	PWY-7238	sucrose biosynthesis II
Tmath_1594	PWY-7347	sucrose biosynthesis III
Tmath_1594	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tmath_1610	PWY-5101	L-isoleucine biosynthesis II
Tmath_1610	PWY-6871	3-methylbutanol biosynthesis
Tmath_1619	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1619	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tmath_1619	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1619	PWY-5723	Rubisco shunt
Tmath_1619	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tmath_1619	PWY-6886	1-butanol autotrophic biosynthesis
Tmath_1619	PWY-6901	superpathway of glucose and xylose degradation
Tmath_1619	PWY-7003	glycerol degradation to butanol
Tmath_1619	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tmath_1619	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tmath_1620	PWY-1042	glycolysis IV (plant cytosol)
Tmath_1620	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tmath_1620	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_1620	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tmath_1623	PWY-1281	sulfoacetaldehyde degradation I
Tmath_1623	PWY-5482	pyruvate fermentation to acetate II
Tmath_1623	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1623	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1623	PWY-6637	sulfolactate degradation II
Tmath_1634	PWY-842	starch degradation I
Tmath_1638	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_1638	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_1651	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1651	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1651	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1660	PWY-5198	factor 420 biosynthesis
Tmath_1660	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tmath_1673	PWY-621	sucrose degradation III (sucrose invertase)
Tmath_1682	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tmath_1682	PWY-5723	Rubisco shunt
Tmath_1686	PWY-4261	glycerol degradation I
Tmath_1696	PWY-2723	trehalose degradation V
Tmath_1696	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_1696	PWY-6737	starch degradation V
Tmath_1704	PWY-6807	xyloglucan degradation II (exoglucanase)
Tmath_1705	PWY-6527	stachyose degradation
Tmath_1711	PWY-3821	galactose degradation III
Tmath_1711	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_1711	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Tmath_1711	PWY-6527	stachyose degradation
Tmath_1711	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Tmath_1711	PWY-7344	UDP-D-galactose biosynthesis
Tmath_1712	PWY-3821	galactose degradation III
Tmath_1712	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_1712	PWY-6527	stachyose degradation
Tmath_1713	PWY-6317	galactose degradation I (Leloir pathway)
Tmath_1713	PWY-6527	stachyose degradation
Tmath_1721	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Tmath_1721	PWY-7248	pectin degradation III
Tmath_1724	PWY-4261	glycerol degradation I
Tmath_1742	PWY-2723	trehalose degradation V
Tmath_1742	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tmath_1742	PWY-5661	GDP-glucose biosynthesis
Tmath_1742	PWY-7238	sucrose biosynthesis II
Tmath_1742	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tmath_1745	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tmath_1745	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tmath_1763	PWY-2941	L-lysine biosynthesis II
Tmath_1763	PWY-2942	L-lysine biosynthesis III
Tmath_1763	PWY-5097	L-lysine biosynthesis VI
Tmath_1781	PWY-4261	glycerol degradation I
Tmath_1787	PWY-6749	CMP-legionaminate biosynthesis I
Tmath_1789	PWY-7533	gliotoxin biosynthesis
Tmath_1791	PWY-1622	formaldehyde assimilation I (serine pathway)
Tmath_1791	PWY-181	photorespiration
Tmath_1791	PWY-2161	folate polyglutamylation
Tmath_1791	PWY-2201	folate transformations I
Tmath_1791	PWY-3661	glycine betaine degradation I
Tmath_1791	PWY-3661-1	glycine betaine degradation II (mammalian)
Tmath_1791	PWY-3841	folate transformations II
Tmath_1791	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1810	PWY-5344	L-homocysteine biosynthesis
Tmath_1811	PWY-5344	L-homocysteine biosynthesis
Tmath_1811	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Tmath_1820	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Tmath_1823	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_1823	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_1823	PWY-7560	methylerythritol phosphate pathway II
Tmath_1831	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tmath_1833	PWY-6938	NADH repair
Tmath_1834	PWY-6012	acyl carrier protein metabolism I
Tmath_1834	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Tmath_1867	PWY-6749	CMP-legionaminate biosynthesis I
Tmath_1868	PWY-6749	CMP-legionaminate biosynthesis I
Tmath_1871	PWY-1281	sulfoacetaldehyde degradation I
Tmath_1871	PWY-5482	pyruvate fermentation to acetate II
Tmath_1871	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1871	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1871	PWY-6637	sulfolactate degradation II
Tmath_1878	PWY-5482	pyruvate fermentation to acetate II
Tmath_1878	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1878	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1880	PWY-1281	sulfoacetaldehyde degradation I
Tmath_1880	PWY-5482	pyruvate fermentation to acetate II
Tmath_1880	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1880	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1880	PWY-6637	sulfolactate degradation II
Tmath_1881	PWY-5482	pyruvate fermentation to acetate II
Tmath_1881	PWY-5485	pyruvate fermentation to acetate IV
Tmath_1881	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_1894	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tmath_1913	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_1941	PWY-6936	seleno-amino acid biosynthesis
Tmath_1941	PWY-7274	D-cycloserine biosynthesis
Tmath_1942	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tmath_1945	PWY-7560	methylerythritol phosphate pathway II
Tmath_1947	PWY-7560	methylerythritol phosphate pathway II
Tmath_1952	PWY-842	starch degradation I
Tmath_1966	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tmath_1966	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_1966	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tmath_1966	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tmath_1966	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1966	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tmath_1966	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tmath_1966	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tmath_1982	PWY-6823	molybdenum cofactor biosynthesis
Tmath_1994	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tmath_1994	PWY-6148	tetrahydromethanopterin biosynthesis
Tmath_1994	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Tmath_1994	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tmath_1995	PWY-6614	tetrahydrofolate biosynthesis
Tmath_1996	PWY-5663	tetrahydrobiopterin biosynthesis I
Tmath_1996	PWY-5664	tetrahydrobiopterin biosynthesis II
Tmath_1996	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tmath_1996	PWY-6703	preQ<sub>0</sub> biosynthesis
Tmath_1996	PWY-6983	tetrahydrobiopterin biosynthesis III
Tmath_1996	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tmath_2006	PWY-3961	phosphopantothenate biosynthesis II
Tmath_2009	PWY-6339	syringate degradation
Tmath_2010	PWY-4381	fatty acid biosynthesis initiation I
Tmath_2010	PWY-5743	3-hydroxypropanoate cycle
Tmath_2010	PWY-5744	glyoxylate assimilation
Tmath_2010	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tmath_2010	PWY-6679	jadomycin biosynthesis
Tmath_2010	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tmath_2012	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Tmath_2012	PWY-2161	folate polyglutamylation
Tmath_2012	PWY-2201	folate transformations I
Tmath_2012	PWY-3841	folate transformations II
Tmath_2015	PWY-6599	guanine and guanosine salvage II
Tmath_2015	PWY-6609	adenine and adenosine salvage III
Tmath_2015	PWY-6610	adenine and adenosine salvage IV
Tmath_2015	PWY-6620	guanine and guanosine salvage
Tmath_2028	PWY-6823	molybdenum cofactor biosynthesis
Tmath_2028	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_2028	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_2028	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tmath_2036	PWY-6936	seleno-amino acid biosynthesis
Tmath_2053	PWY-1281	sulfoacetaldehyde degradation I
Tmath_2053	PWY-5482	pyruvate fermentation to acetate II
Tmath_2053	PWY-5485	pyruvate fermentation to acetate IV
Tmath_2053	PWY-5497	purine nucleobases degradation II (anaerobic)
Tmath_2053	PWY-6637	sulfolactate degradation II
Tmath_2064	PWY-5392	reductive TCA cycle II
Tmath_2064	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tmath_2064	PWY-5690	TCA cycle II (plants and fungi)
Tmath_2064	PWY-5913	TCA cycle VI (obligate autotrophs)
Tmath_2064	PWY-6728	methylaspartate cycle
Tmath_2064	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tmath_2064	PWY-7254	TCA cycle VII (acetate-producers)
Tmath_2064	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tmath_2072	PWY-5303	thiosulfate oxidation II (via tetrathionate)
Tmath_2073	PWY-1622	formaldehyde assimilation I (serine pathway)
Tmath_2073	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tmath_2083	PWY-4983	L-citrulline-nitric oxide cycle
Tmath_2083	PWY-4984	urea cycle
Tmath_2083	PWY-5	canavanine biosynthesis
Tmath_2083	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2083	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2084	PWY-4983	L-citrulline-nitric oxide cycle
Tmath_2084	PWY-4984	urea cycle
Tmath_2084	PWY-5	canavanine biosynthesis
Tmath_2084	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2084	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2085	PWY-5686	UMP biosynthesis
Tmath_2085	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2086	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2086	PWY-5686	UMP biosynthesis
Tmath_2086	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2088	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2088	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2089	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2090	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tmath_2090	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tmath_2096	PWY-101	photosynthesis light reactions
Tmath_2096	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Tmath_2110	PWY-3162	L-tryptophan degradation V (side chain pathway)
Tmath_2110	PWY-5057	L-valine degradation II
Tmath_2110	PWY-5076	L-leucine degradation III
Tmath_2110	PWY-5078	L-isoleucine degradation II
Tmath_2110	PWY-5079	L-phenylalanine degradation III
Tmath_2110	PWY-5082	L-methionine degradation III
Tmath_2110	PWY-5162	2-oxopentenoate degradation
Tmath_2110	PWY-5436	L-threonine degradation IV
Tmath_2110	PWY-5480	pyruvate fermentation to ethanol I
Tmath_2110	PWY-5486	pyruvate fermentation to ethanol II
Tmath_2110	PWY-5751	phenylethanol biosynthesis
Tmath_2110	PWY-6028	acetoin degradation
Tmath_2110	PWY-6313	serotonin degradation
Tmath_2110	PWY-6333	acetaldehyde biosynthesis I
Tmath_2110	PWY-6342	noradrenaline and adrenaline degradation
Tmath_2110	PWY-6587	pyruvate fermentation to ethanol III
Tmath_2110	PWY-6802	salidroside biosynthesis
Tmath_2110	PWY-6871	3-methylbutanol biosynthesis
Tmath_2110	PWY-7013	L-1,2-propanediol degradation
Tmath_2110	PWY-7085	triethylamine degradation
Tmath_2110	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tmath_2110	PWY-7118	chitin degradation to ethanol
Tmath_2110	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tmath_2110	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Tmath_2110	PWY-7557	dehydrodiconiferyl alcohol degradation
Tmath_2122	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_2122	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_2133	PWY-7560	methylerythritol phosphate pathway II
Tmath_2146	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tmath_2149	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_2149	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_2158	PWY-7310	D-glucosaminate degradation
Tmath_2168	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tmath_2168	PWY-7177	UTP and CTP dephosphorylation II
Tmath_2168	PWY-7185	UTP and CTP dephosphorylation I
Tmath_2174	PWY-6832	2-aminoethylphosphonate degradation II
Tmath_2177	PWY-702	L-methionine biosynthesis II
Tmath_2204	PWY-6823	molybdenum cofactor biosynthesis
Tmath_2204	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_2204	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_2204	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tmath_2217	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tmath_2217	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tmath_2231	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_2242	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_2243	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tmath_2270	PWY-7052	cyanophycin metabolism
Tmath_2271	PWY-7052	cyanophycin metabolism
Tmath_2274	PWY-6823	molybdenum cofactor biosynthesis
Tmath_2274	PWY-6891	thiazole biosynthesis II (Bacillus)
Tmath_2274	PWY-6892	thiazole biosynthesis I (E. coli)
Tmath_2274	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
