Tthe_0012	PWY-5101	L-isoleucine biosynthesis II
Tthe_0012	PWY-5103	L-isoleucine biosynthesis III
Tthe_0012	PWY-5104	L-isoleucine biosynthesis IV
Tthe_0012	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Tthe_0012	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Tthe_0012	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Tthe_0012	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tthe_0013	PWY-5101	L-isoleucine biosynthesis II
Tthe_0013	PWY-5103	L-isoleucine biosynthesis III
Tthe_0013	PWY-5104	L-isoleucine biosynthesis IV
Tthe_0013	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tthe_0014	PWY-6871	3-methylbutanol biosynthesis
Tthe_0017	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Tthe_0018	PWY-5101	L-isoleucine biosynthesis II
Tthe_0018	PWY-5103	L-isoleucine biosynthesis III
Tthe_0018	PWY-5104	L-isoleucine biosynthesis IV
Tthe_0018	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tthe_0019	PWY-5101	L-isoleucine biosynthesis II
Tthe_0019	PWY-5103	L-isoleucine biosynthesis III
Tthe_0019	PWY-5104	L-isoleucine biosynthesis IV
Tthe_0019	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
Tthe_0019	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
Tthe_0019	PWY-6389	(<i>S</i>)-acetoin biosynthesis
Tthe_0019	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tthe_0021	PWY-6167	flavin biosynthesis II (archaea)
Tthe_0021	PWY-6168	flavin biosynthesis III (fungi)
Tthe_0021	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_0022	PWY-6167	flavin biosynthesis II (archaea)
Tthe_0022	PWY-6168	flavin biosynthesis III (fungi)
Tthe_0022	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tthe_0023	PWY-6167	flavin biosynthesis II (archaea)
Tthe_0023	PWY-6168	flavin biosynthesis III (fungi)
Tthe_0027	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
Tthe_0035	PWY-6823	molybdenum cofactor biosynthesis
Tthe_0072	PWY-2723	trehalose degradation V
Tthe_0072	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tthe_0072	PWY-5661	GDP-glucose biosynthesis
Tthe_0072	PWY-7238	sucrose biosynthesis II
Tthe_0072	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tthe_0077	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tthe_0077	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_0077	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_0077	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tthe_0077	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tthe_0077	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tthe_0085	PWY-4981	L-proline biosynthesis II (from arginine)
Tthe_0133	PWY-723	alkylnitronates degradation
Tthe_0134	PWY-7456	mannan degradation
Tthe_0140	PWY-6527	stachyose degradation
Tthe_0146	PWY-6683	sulfate reduction III (assimilatory)
Tthe_0167	PWY-2941	L-lysine biosynthesis II
Tthe_0167	PWY-2942	L-lysine biosynthesis III
Tthe_0167	PWY-5097	L-lysine biosynthesis VI
Tthe_0191	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_0191	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_0194	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tthe_0207	PWY-7560	methylerythritol phosphate pathway II
Tthe_0219	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_0219	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_0231	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_0231	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tthe_0231	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tthe_0231	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_0240	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0240	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0241	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0242	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0242	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0244	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0244	PWY-5686	UMP biosynthesis
Tthe_0244	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0245	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0245	PWY-5686	UMP biosynthesis
Tthe_0245	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0246	PWY-4983	L-citrulline-nitric oxide cycle
Tthe_0246	PWY-4984	urea cycle
Tthe_0246	PWY-5	canavanine biosynthesis
Tthe_0246	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0246	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0247	PWY-4983	L-citrulline-nitric oxide cycle
Tthe_0247	PWY-4984	urea cycle
Tthe_0247	PWY-5	canavanine biosynthesis
Tthe_0247	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_0247	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_0255	PWY-5392	reductive TCA cycle II
Tthe_0255	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
Tthe_0255	PWY-5690	TCA cycle II (plants and fungi)
Tthe_0255	PWY-5913	TCA cycle VI (obligate autotrophs)
Tthe_0255	PWY-6728	methylaspartate cycle
Tthe_0255	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tthe_0255	PWY-7254	TCA cycle VII (acetate-producers)
Tthe_0255	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
Tthe_0265	PWY-1281	sulfoacetaldehyde degradation I
Tthe_0265	PWY-5482	pyruvate fermentation to acetate II
Tthe_0265	PWY-5485	pyruvate fermentation to acetate IV
Tthe_0265	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_0265	PWY-6637	sulfolactate degradation II
Tthe_0352	PWY-4202	arsenate detoxification I (glutaredoxin)
Tthe_0360	PWY-6599	guanine and guanosine salvage II
Tthe_0360	PWY-6609	adenine and adenosine salvage III
Tthe_0360	PWY-6610	adenine and adenosine salvage IV
Tthe_0360	PWY-6620	guanine and guanosine salvage
Tthe_0365	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Tthe_0365	PWY-2161	folate polyglutamylation
Tthe_0365	PWY-2201	folate transformations I
Tthe_0365	PWY-3841	folate transformations II
Tthe_0367	PWY-4381	fatty acid biosynthesis initiation I
Tthe_0367	PWY-5743	3-hydroxypropanoate cycle
Tthe_0367	PWY-5744	glyoxylate assimilation
Tthe_0367	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tthe_0367	PWY-6679	jadomycin biosynthesis
Tthe_0367	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tthe_0371	PWY-3961	phosphopantothenate biosynthesis II
Tthe_0381	PWY-5663	tetrahydrobiopterin biosynthesis I
Tthe_0381	PWY-5664	tetrahydrobiopterin biosynthesis II
Tthe_0381	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tthe_0381	PWY-6703	preQ<sub>0</sub> biosynthesis
Tthe_0381	PWY-6983	tetrahydrobiopterin biosynthesis III
Tthe_0381	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tthe_0382	PWY-6614	tetrahydrofolate biosynthesis
Tthe_0383	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tthe_0383	PWY-6148	tetrahydromethanopterin biosynthesis
Tthe_0383	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
Tthe_0383	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
Tthe_0390	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tthe_0390	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_0390	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tthe_0390	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tthe_0390	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_0390	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_0390	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_0390	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tthe_0404	PWY-7560	methylerythritol phosphate pathway II
Tthe_0406	PWY-7560	methylerythritol phosphate pathway II
Tthe_0409	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_0410	PWY-6936	seleno-amino acid biosynthesis
Tthe_0410	PWY-7274	D-cycloserine biosynthesis
Tthe_0453	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_0473	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tthe_0493	PWY-6749	CMP-legionaminate biosynthesis I
Tthe_0494	PWY-6749	CMP-legionaminate biosynthesis I
Tthe_0535	PWY-6938	NADH repair
Tthe_0537	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tthe_0546	PWY-5316	nicotine biosynthesis
Tthe_0546	PWY-7342	superpathway of nicotine biosynthesis
Tthe_0547	PWY-5316	nicotine biosynthesis
Tthe_0547	PWY-7342	superpathway of nicotine biosynthesis
Tthe_0548	PWY-5316	nicotine biosynthesis
Tthe_0548	PWY-5381	pyridine nucleotide cycling (plants)
Tthe_0548	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tthe_0548	PWY-7342	superpathway of nicotine biosynthesis
Tthe_0568	PWY-7533	gliotoxin biosynthesis
Tthe_0569	PWY-1622	formaldehyde assimilation I (serine pathway)
Tthe_0569	PWY-181	photorespiration
Tthe_0569	PWY-2161	folate polyglutamylation
Tthe_0569	PWY-2201	folate transformations I
Tthe_0569	PWY-3661	glycine betaine degradation I
Tthe_0569	PWY-3661-1	glycine betaine degradation II (mammalian)
Tthe_0569	PWY-3841	folate transformations II
Tthe_0569	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_0572	PWY-6749	CMP-legionaminate biosynthesis I
Tthe_0586	PWY-4261	glycerol degradation I
Tthe_0610	PWY-2941	L-lysine biosynthesis II
Tthe_0610	PWY-2942	L-lysine biosynthesis III
Tthe_0610	PWY-5097	L-lysine biosynthesis VI
Tthe_0632	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tthe_0632	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tthe_0634	PWY-7310	D-glucosaminate degradation
Tthe_0638	PWY-2723	trehalose degradation V
Tthe_0638	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tthe_0638	PWY-5661	GDP-glucose biosynthesis
Tthe_0638	PWY-7238	sucrose biosynthesis II
Tthe_0638	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tthe_0645	PWY-6807	xyloglucan degradation II (exoglucanase)
Tthe_0649	PWY-7310	D-glucosaminate degradation
Tthe_0650	PWY-7310	D-glucosaminate degradation
Tthe_0654	PWY-6807	xyloglucan degradation II (exoglucanase)
Tthe_0667	PWY-4261	glycerol degradation I
Tthe_0677	PWY-6317	galactose degradation I (Leloir pathway)
Tthe_0677	PWY-6527	stachyose degradation
Tthe_0678	PWY-3821	galactose degradation III
Tthe_0678	PWY-6317	galactose degradation I (Leloir pathway)
Tthe_0678	PWY-6527	stachyose degradation
Tthe_0679	PWY-3821	galactose degradation III
Tthe_0679	PWY-6317	galactose degradation I (Leloir pathway)
Tthe_0679	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
Tthe_0679	PWY-6527	stachyose degradation
Tthe_0679	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
Tthe_0679	PWY-7344	UDP-D-galactose biosynthesis
Tthe_0717	PWY-6936	seleno-amino acid biosynthesis
Tthe_0723	PWY-6936	seleno-amino acid biosynthesis
Tthe_0724	PWY-5344	L-homocysteine biosynthesis
Tthe_0724	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Tthe_0747	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_0747	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_0767	PWY-1281	sulfoacetaldehyde degradation I
Tthe_0767	PWY-5482	pyruvate fermentation to acetate II
Tthe_0767	PWY-5485	pyruvate fermentation to acetate IV
Tthe_0767	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_0767	PWY-6637	sulfolactate degradation II
Tthe_0770	PWY-1042	glycolysis IV (plant cytosol)
Tthe_0770	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_0770	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_0770	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tthe_0771	PWY-1042	glycolysis IV (plant cytosol)
Tthe_0771	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_0771	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_0771	PWY-5723	Rubisco shunt
Tthe_0771	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_0771	PWY-6886	1-butanol autotrophic biosynthesis
Tthe_0771	PWY-6901	superpathway of glucose and xylose degradation
Tthe_0771	PWY-7003	glycerol degradation to butanol
Tthe_0771	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tthe_0771	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tthe_0773	PWY-5767	Tthe_0773
Tthe_0788	PWY-4041	&gamma;-glutamyl cycle
Tthe_0831	PWY-6012	acyl carrier protein metabolism I
Tthe_0831	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
Tthe_0838	PWY-3801	sucrose degradation II (sucrose synthase)
Tthe_0838	PWY-5054	sorbitol biosynthesis I
Tthe_0838	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Tthe_0838	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tthe_0838	PWY-5659	GDP-mannose biosynthesis
Tthe_0838	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_0838	PWY-621	sucrose degradation III (sucrose invertase)
Tthe_0838	PWY-622	starch biosynthesis
Tthe_0838	PWY-6531	mannitol cycle
Tthe_0838	PWY-6981	chitin biosynthesis
Tthe_0838	PWY-7238	sucrose biosynthesis II
Tthe_0838	PWY-7347	sucrose biosynthesis III
Tthe_0838	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tthe_0848	PWY-2201	folate transformations I
Tthe_0848	PWY-3841	folate transformations II
Tthe_0878	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
Tthe_0878	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tthe_0893	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_0895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_0904	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Tthe_0905	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
Tthe_0925	PWY-5659	GDP-mannose biosynthesis
Tthe_0925	PWY-6073	alginate biosynthesis I (algal)
Tthe_0925	PWY-6082	alginate biosynthesis II (bacterial)
Tthe_0925	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Tthe_0968	PWY-6683	sulfate reduction III (assimilatory)
Tthe_0971	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
Tthe_0975	PWY-7242	D-fructuronate degradation
Tthe_0992	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Tthe_0993	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
Tthe_1016	PWY-6749	CMP-legionaminate biosynthesis I
Tthe_1018	PWY-3801	sucrose degradation II (sucrose synthase)
Tthe_1018	PWY-6527	stachyose degradation
Tthe_1018	PWY-6981	chitin biosynthesis
Tthe_1018	PWY-7238	sucrose biosynthesis II
Tthe_1018	PWY-7343	UDP-glucose biosynthesis
Tthe_1025	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tthe_1025	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tthe_1025	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_1025	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1025	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
Tthe_1025	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
Tthe_1025	PWY-7205	CMP phosphorylation
Tthe_1025	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tthe_1025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1025	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_1025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1025	PWY-7224	purine deoxyribonucleosides salvage
Tthe_1025	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_1025	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
Tthe_1033	PWY-5269	cardiolipin biosynthesis II
Tthe_1033	PWY-5668	cardiolipin biosynthesis I
Tthe_1041	PWY-2161	folate polyglutamylation
Tthe_1054	PWY-2721	trehalose degradation III
Tthe_1054	PWY-2722	trehalose degradation IV
Tthe_1054	PWY-6317	galactose degradation I (Leloir pathway)
Tthe_1054	PWY-7459	kojibiose degradation
Tthe_1057	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tthe_1057	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tthe_1057	PWY-6268	adenosylcobalamin salvage from cobalamin
Tthe_1057	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tthe_1058	PWY-2941	L-lysine biosynthesis II
Tthe_1059	PWY-2941	L-lysine biosynthesis II
Tthe_1059	PWY-2942	L-lysine biosynthesis III
Tthe_1059	PWY-5097	L-lysine biosynthesis VI
Tthe_1060	PWY-2941	L-lysine biosynthesis II
Tthe_1060	PWY-2942	L-lysine biosynthesis III
Tthe_1060	PWY-5097	L-lysine biosynthesis VI
Tthe_1061	PWY-2941	L-lysine biosynthesis II
Tthe_1061	PWY-2942	L-lysine biosynthesis III
Tthe_1061	PWY-5097	L-lysine biosynthesis VI
Tthe_1061	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
Tthe_1061	PWY-6559	spermidine biosynthesis II
Tthe_1061	PWY-6562	norspermidine biosynthesis
Tthe_1061	PWY-7153	grixazone biosynthesis
Tthe_1061	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_1064	PWY-381	nitrate reduction II (assimilatory)
Tthe_1064	PWY-5675	nitrate reduction V (assimilatory)
Tthe_1064	PWY-6549	L-glutamine biosynthesis III
Tthe_1064	PWY-6963	ammonia assimilation cycle I
Tthe_1064	PWY-6964	ammonia assimilation cycle II
Tthe_1088	PWY-6854	ethylene biosynthesis III (microbes)
Tthe_1105	PWY-5381	pyridine nucleotide cycling (plants)
Tthe_1111	PWY-1281	sulfoacetaldehyde degradation I
Tthe_1111	PWY-5482	pyruvate fermentation to acetate II
Tthe_1111	PWY-5485	pyruvate fermentation to acetate IV
Tthe_1111	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_1111	PWY-6637	sulfolactate degradation II
Tthe_1114	PWY-1281	sulfoacetaldehyde degradation I
Tthe_1114	PWY-5482	pyruvate fermentation to acetate II
Tthe_1114	PWY-5485	pyruvate fermentation to acetate IV
Tthe_1114	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_1114	PWY-6637	sulfolactate degradation II
Tthe_1143	PWY-5381	pyridine nucleotide cycling (plants)
Tthe_1143	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
Tthe_1148	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1148	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1153	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1154	PWY-4041	&gamma;-glutamyl cycle
Tthe_1158	PWY-101	photosynthesis light reactions
Tthe_1158	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
Tthe_1160	PWY-5057	L-valine degradation II
Tthe_1160	PWY-5076	L-leucine degradation III
Tthe_1160	PWY-5078	L-isoleucine degradation II
Tthe_1160	PWY-5101	L-isoleucine biosynthesis II
Tthe_1160	PWY-5103	L-isoleucine biosynthesis III
Tthe_1160	PWY-5104	L-isoleucine biosynthesis IV
Tthe_1160	PWY-5108	L-isoleucine biosynthesis V
Tthe_1199	PWY-7039	phosphatidate metabolism, as a signaling molecule
Tthe_1201	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tthe_1206	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
Tthe_1206	PWY-6549	L-glutamine biosynthesis III
Tthe_1206	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
Tthe_1206	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
Tthe_1211	PWY-381	nitrate reduction II (assimilatory)
Tthe_1211	PWY-5675	nitrate reduction V (assimilatory)
Tthe_1211	PWY-6549	L-glutamine biosynthesis III
Tthe_1211	PWY-6963	ammonia assimilation cycle I
Tthe_1211	PWY-6964	ammonia assimilation cycle II
Tthe_1216	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tthe_1223	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Tthe_1223	PWY-6153	autoinducer AI-2 biosynthesis I
Tthe_1223	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Tthe_1225	PWY-5958	acridone alkaloid biosynthesis
Tthe_1225	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tthe_1225	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tthe_1226	PWY-5958	acridone alkaloid biosynthesis
Tthe_1226	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
Tthe_1226	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
Tthe_1243	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1243	PWY-5723	Rubisco shunt
Tthe_1243	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_1243	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_1243	PWY-6901	superpathway of glucose and xylose degradation
Tthe_1243	PWY-7560	methylerythritol phosphate pathway II
Tthe_1255	PWY-6823	molybdenum cofactor biosynthesis
Tthe_1255	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_1255	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_1255	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tthe_1276	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1290	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1293	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1293	PWY-6416	quinate degradation II
Tthe_1293	PWY-6707	gallate biosynthesis
Tthe_1309	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
Tthe_1309	PWY-2201	folate transformations I
Tthe_1309	PWY-3841	folate transformations II
Tthe_1309	PWY-5030	L-histidine degradation III
Tthe_1309	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_1309	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tthe_1314	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_1314	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_1314	PWY-7560	methylerythritol phosphate pathway II
Tthe_1316	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Tthe_1316	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tthe_1316	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Tthe_1321	PWY-6898	thiamin salvage III
Tthe_1321	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tthe_1321	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tthe_1324	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1324	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tthe_1324	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1331	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1331	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1345	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1345	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1351	PWY-40	putrescine biosynthesis I
Tthe_1351	PWY-6305	putrescine biosynthesis IV
Tthe_1355	PWY-5381	pyridine nucleotide cycling (plants)
Tthe_1355	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tthe_1355	PWY-6596	adenosine nucleotides degradation I
Tthe_1355	PWY-6606	guanosine nucleotides degradation II
Tthe_1355	PWY-6607	guanosine nucleotides degradation I
Tthe_1355	PWY-6608	guanosine nucleotides degradation III
Tthe_1355	PWY-7185	UTP and CTP dephosphorylation I
Tthe_1360	PWY-3461	L-tyrosine biosynthesis II
Tthe_1360	PWY-3462	L-phenylalanine biosynthesis II
Tthe_1360	PWY-6120	L-tyrosine biosynthesis III
Tthe_1360	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1360	PWY-6627	salinosporamide A biosynthesis
Tthe_1360	PWY-7205	CMP phosphorylation
Tthe_1362	PWY-7560	methylerythritol phosphate pathway II
Tthe_1364	PWY-6834	spermidine biosynthesis III
Tthe_1370	PWY-2781	<i>cis</i>-zeatin biosynthesis
Tthe_1372	PWY-3341	L-proline biosynthesis III
Tthe_1372	PWY-4981	L-proline biosynthesis II (from arginine)
Tthe_1372	PWY-6344	L-ornithine degradation II (Stickland reaction)
Tthe_1379	PWY-6123	inosine-5'-phosphate biosynthesis I
Tthe_1379	PWY-6124	inosine-5'-phosphate biosynthesis II
Tthe_1379	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_1379	PWY-7234	inosine-5'-phosphate biosynthesis III
Tthe_1393	PWY-5269	cardiolipin biosynthesis II
Tthe_1393	PWY-5668	cardiolipin biosynthesis I
Tthe_1398	PWY-2941	L-lysine biosynthesis II
Tthe_1398	PWY-2942	L-lysine biosynthesis III
Tthe_1398	PWY-5097	L-lysine biosynthesis VI
Tthe_1398	PWY-6559	spermidine biosynthesis II
Tthe_1398	PWY-6562	norspermidine biosynthesis
Tthe_1398	PWY-7153	grixazone biosynthesis
Tthe_1400	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
Tthe_1400	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
Tthe_1400	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1400	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Tthe_1405	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
Tthe_1405	PWY-6167	flavin biosynthesis II (archaea)
Tthe_1405	PWY-6168	flavin biosynthesis III (fungi)
Tthe_1416	PWY-7560	methylerythritol phosphate pathway II
Tthe_1418	PWY-7560	methylerythritol phosphate pathway II
Tthe_1452	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_1470	PWY-6829	tRNA methylation (yeast)
Tthe_1470	PWY-7285	methylwyosine biosynthesis
Tthe_1470	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
Tthe_1493	PWY-5367	petroselinate biosynthesis
Tthe_1493	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tthe_1493	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tthe_1493	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tthe_1493	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tthe_1493	PWY-6113	superpathway of mycolate biosynthesis
Tthe_1493	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tthe_1493	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tthe_1493	PWY-6951	Tthe_1493
Tthe_1493	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
Tthe_1493	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tthe_1493	PWYG-321	mycolate biosynthesis
Tthe_1494	PWY-4381	fatty acid biosynthesis initiation I
Tthe_1494	PWY-6799	fatty acid biosynthesis (plant mitochondria)
Tthe_1494	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tthe_1495	PWY-723	alkylnitronates degradation
Tthe_1496	PWY-4381	fatty acid biosynthesis initiation I
Tthe_1501	PWY-5482	pyruvate fermentation to acetate II
Tthe_1501	PWY-5485	pyruvate fermentation to acetate IV
Tthe_1501	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_1502	PWY-1281	sulfoacetaldehyde degradation I
Tthe_1502	PWY-5482	pyruvate fermentation to acetate II
Tthe_1502	PWY-5485	pyruvate fermentation to acetate IV
Tthe_1502	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_1502	PWY-6637	sulfolactate degradation II
Tthe_1517	PWY-6898	thiamin salvage III
Tthe_1517	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tthe_1517	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tthe_1518	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1518	PWY-5723	Rubisco shunt
Tthe_1531	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_1534	PWY-2941	L-lysine biosynthesis II
Tthe_1534	PWY-5097	L-lysine biosynthesis VI
Tthe_1539	PWY-5686	UMP biosynthesis
Tthe_1542	PWY-5686	UMP biosynthesis
Tthe_1543	PWY-5686	UMP biosynthesis
Tthe_1544	PWY-5686	UMP biosynthesis
Tthe_1545	PWY-7183	pyrimidine nucleobases salvage I
Tthe_1551	PWY-6605	adenine and adenosine salvage II
Tthe_1551	PWY-6610	adenine and adenosine salvage IV
Tthe_1558	PWY-6823	molybdenum cofactor biosynthesis
Tthe_1562	PWY-6700	queuosine biosynthesis
Tthe_1563	PWY-6700	queuosine biosynthesis
Tthe_1587	PWY-5278	sulfite oxidation III
Tthe_1587	PWY-5340	sulfate activation for sulfonation
Tthe_1587	PWY-6683	sulfate reduction III (assimilatory)
Tthe_1587	PWY-6932	selenate reduction
Tthe_1589	PWY-5344	L-homocysteine biosynthesis
Tthe_1589	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
Tthe_1594	PWY-6683	sulfate reduction III (assimilatory)
Tthe_1595	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1595	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tthe_1596	PWY-5194	siroheme biosynthesis
Tthe_1596	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1597	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1598	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1598	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tthe_1598	PWY-5194	siroheme biosynthesis
Tthe_1598	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1599	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1599	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
Tthe_1600	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
Tthe_1618	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
Tthe_1618	PWY-6855	chitin degradation I (archaea)
Tthe_1618	PWY-6906	chitin derivatives degradation
Tthe_1629	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1631	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tthe_1631	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Tthe_1631	PWY-6164	3-dehydroquinate biosynthesis I
Tthe_1632	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
Tthe_1634	PWY-6164	3-dehydroquinate biosynthesis I
Tthe_1639	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
Tthe_1639	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
Tthe_1640	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tthe_1653	PWY-6902	chitin degradation II
Tthe_1657	PWY-1361	benzoyl-CoA degradation I (aerobic)
Tthe_1657	PWY-5109	2-methylbutanoate biosynthesis
Tthe_1657	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
Tthe_1657	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
Tthe_1657	PWY-5177	glutaryl-CoA degradation
Tthe_1657	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
Tthe_1657	PWY-6435	4-hydroxybenzoate biosynthesis V
Tthe_1657	PWY-6583	pyruvate fermentation to butanol I
Tthe_1657	PWY-6863	pyruvate fermentation to hexanol
Tthe_1657	PWY-6883	pyruvate fermentation to butanol II
Tthe_1657	PWY-6944	androstenedione degradation
Tthe_1657	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
Tthe_1657	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
Tthe_1657	PWY-7007	methyl ketone biosynthesis
Tthe_1657	PWY-7046	4-coumarate degradation (anaerobic)
Tthe_1657	PWY-7094	fatty acid salvage
Tthe_1657	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
Tthe_1657	PWY-735	jasmonic acid biosynthesis
Tthe_1657	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
Tthe_1663	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_1663	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_1676	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_1676	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tthe_1676	PWY-7242	D-fructuronate degradation
Tthe_1676	PWY-7310	D-glucosaminate degradation
Tthe_1677	PWY-7310	D-glucosaminate degradation
Tthe_1684	PWY-7310	D-glucosaminate degradation
Tthe_1688	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tthe_1689	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
Tthe_1692	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Tthe_1698	PWY-6019	pseudouridine degradation
Tthe_1705	PWY-4202	arsenate detoxification I (glutaredoxin)
Tthe_1705	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tthe_1705	PWY-6608	guanosine nucleotides degradation III
Tthe_1705	PWY-6609	adenine and adenosine salvage III
Tthe_1705	PWY-6611	adenine and adenosine salvage V
Tthe_1705	PWY-6620	guanine and guanosine salvage
Tthe_1705	PWY-6627	salinosporamide A biosynthesis
Tthe_1705	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Tthe_1705	PWY-7179	purine deoxyribonucleosides degradation I
Tthe_1705	PWY-7179-1	purine deoxyribonucleosides degradation
Tthe_1720	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tthe_1720	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tthe_1720	PWY-6897	thiamin salvage II
Tthe_1720	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tthe_1720	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tthe_1720	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tthe_1720	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tthe_1731	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1731	PWY-5723	Rubisco shunt
Tthe_1735	PWY-7310	D-glucosaminate degradation
Tthe_1740	PWY-5667	CDP-diacylglycerol biosynthesis I
Tthe_1740	PWY-5981	CDP-diacylglycerol biosynthesis III
Tthe_1765	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_1765	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_1766	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1766	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
Tthe_1766	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tthe_1766	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1768	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_1768	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_1769	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_1769	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tthe_1769	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_1770	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_1770	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_1781	PWY-6823	molybdenum cofactor biosynthesis
Tthe_1781	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_1781	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_1781	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tthe_1806	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
Tthe_1813	PWY-3121	linamarin degradation
Tthe_1813	PWY-5176	coumarin biosynthesis (via 2-coumarate)
Tthe_1813	PWY-6002	lotaustralin degradation
Tthe_1813	PWY-6788	cellulose degradation II (fungi)
Tthe_1813	PWY-7089	taxiphyllin bioactivation
Tthe_1813	PWY-7091	linustatin bioactivation
Tthe_1813	PWY-7092	neolinustatin bioactivation
Tthe_1821	PWY-6349	CDP-archaeol biosynthesis
Tthe_1831	PWY-7310	D-glucosaminate degradation
Tthe_1840	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1841	PWY-5194	siroheme biosynthesis
Tthe_1841	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1843	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1845	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1847	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
Tthe_1873	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
Tthe_1873	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
Tthe_1873	PWY-6897	thiamin salvage II
Tthe_1873	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
Tthe_1873	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
Tthe_1873	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tthe_1873	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tthe_1874	PWY-6897	thiamin salvage II
Tthe_1874	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
Tthe_1874	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tthe_1876	PWY-6910	hydroxymethylpyrimidine salvage
Tthe_1876	PWY-7356	thiamin salvage IV (yeast)
Tthe_1876	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
Tthe_1902	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1902	PWY-5723	Rubisco shunt
Tthe_1903	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1903	PWY-5723	Rubisco shunt
Tthe_1905	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1905	PWY-5723	Rubisco shunt
Tthe_1906	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_1906	PWY-5723	Rubisco shunt
Tthe_1908	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_1908	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_1908	PWY-7560	methylerythritol phosphate pathway II
Tthe_1912	PWY-7310	D-glucosaminate degradation
Tthe_1921	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
Tthe_1924	PWY-621	sucrose degradation III (sucrose invertase)
Tthe_1930	PWY-6807	xyloglucan degradation II (exoglucanase)
Tthe_1936	PWY-7456	mannan degradation
Tthe_1937	PWY-7456	mannan degradation
Tthe_1943	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1943	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1943	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
Tthe_1948	PWY-5199	factor 420 polyglutamylation
Tthe_1955	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
Tthe_1955	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
Tthe_1956	PWY-6984	lipoate salvage II
Tthe_1956	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
Tthe_1956	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
Tthe_1964	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
Tthe_1988	PWY-4261	glycerol degradation I
Tthe_2007	PWY-3861	mannitol degradation II
Tthe_2007	PWY-3881	mannitol biosynthesis
Tthe_2007	PWY-5659	GDP-mannose biosynthesis
Tthe_2007	PWY-7456	mannan degradation
Tthe_2007	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
Tthe_2008	PWY-4202	arsenate detoxification I (glutaredoxin)
Tthe_2008	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tthe_2008	PWY-6608	guanosine nucleotides degradation III
Tthe_2008	PWY-6609	adenine and adenosine salvage III
Tthe_2008	PWY-6611	adenine and adenosine salvage V
Tthe_2008	PWY-6620	guanine and guanosine salvage
Tthe_2008	PWY-6627	salinosporamide A biosynthesis
Tthe_2008	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
Tthe_2008	PWY-7179	purine deoxyribonucleosides degradation I
Tthe_2008	PWY-7179-1	purine deoxyribonucleosides degradation
Tthe_2010	PWY-5663	tetrahydrobiopterin biosynthesis I
Tthe_2010	PWY-5664	tetrahydrobiopterin biosynthesis II
Tthe_2010	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Tthe_2010	PWY-6703	preQ<sub>0</sub> biosynthesis
Tthe_2010	PWY-6983	tetrahydrobiopterin biosynthesis III
Tthe_2010	PWY-7442	drosopterin and aurodrosopterin biosynthesis
Tthe_2017	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2017	PWY-1622	formaldehyde assimilation I (serine pathway)
Tthe_2017	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_2017	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2017	PWY-5723	Rubisco shunt
Tthe_2017	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_2017	PWY-6886	1-butanol autotrophic biosynthesis
Tthe_2017	PWY-6901	superpathway of glucose and xylose degradation
Tthe_2017	PWY-7003	glycerol degradation to butanol
Tthe_2017	PWY-7124	ethylene biosynthesis V (engineered)
Tthe_2017	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tthe_2018	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2018	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_2018	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2018	PWY-5723	Rubisco shunt
Tthe_2018	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_2018	PWY-6886	1-butanol autotrophic biosynthesis
Tthe_2018	PWY-6901	superpathway of glucose and xylose degradation
Tthe_2018	PWY-7003	glycerol degradation to butanol
Tthe_2018	PWY-7124	ethylene biosynthesis V (engineered)
Tthe_2018	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
Tthe_2019	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2019	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2019	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_2019	PWY-7003	glycerol degradation to butanol
Tthe_2020	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2020	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2020	PWY-6886	1-butanol autotrophic biosynthesis
Tthe_2020	PWY-6901	superpathway of glucose and xylose degradation
Tthe_2020	PWY-7003	glycerol degradation to butanol
Tthe_2021	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2021	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2021	PWY-6901	superpathway of glucose and xylose degradation
Tthe_2021	PWY-7003	glycerol degradation to butanol
Tthe_2053	PWY-5101	L-isoleucine biosynthesis II
Tthe_2053	PWY-6871	3-methylbutanol biosynthesis
Tthe_2057	PWY-6700	queuosine biosynthesis
Tthe_2060	PWY-3801	sucrose degradation II (sucrose synthase)
Tthe_2060	PWY-6527	stachyose degradation
Tthe_2060	PWY-6981	chitin biosynthesis
Tthe_2060	PWY-7238	sucrose biosynthesis II
Tthe_2060	PWY-7343	UDP-glucose biosynthesis
Tthe_2077	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
Tthe_2088	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
Tthe_2094	PWY-7310	D-glucosaminate degradation
Tthe_2095	PWY-7310	D-glucosaminate degradation
Tthe_2097	PWY-7310	D-glucosaminate degradation
Tthe_2102	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
Tthe_2102	PWY-6153	autoinducer AI-2 biosynthesis I
Tthe_2102	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
Tthe_2106	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_2106	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_2107	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tthe_2107	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tthe_2107	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tthe_2108	PWY-6123	inosine-5'-phosphate biosynthesis I
Tthe_2108	PWY-6124	inosine-5'-phosphate biosynthesis II
Tthe_2108	PWY-7234	inosine-5'-phosphate biosynthesis III
Tthe_2109	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tthe_2109	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
Tthe_2110	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tthe_2110	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tthe_2110	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tthe_2111	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
Tthe_2111	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
Tthe_2111	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Tthe_2111	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
Tthe_2112	PWY-6123	inosine-5'-phosphate biosynthesis I
Tthe_2112	PWY-6124	inosine-5'-phosphate biosynthesis II
Tthe_2112	PWY-7234	inosine-5'-phosphate biosynthesis III
Tthe_2113	PWY-6123	inosine-5'-phosphate biosynthesis I
Tthe_2113	PWY-7234	inosine-5'-phosphate biosynthesis III
Tthe_2115	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_2116	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
Tthe_2116	PWY-6596	adenosine nucleotides degradation I
Tthe_2116	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_2161	PWY-4981	L-proline biosynthesis II (from arginine)
Tthe_2161	PWY-4984	urea cycle
Tthe_2161	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
Tthe_2203	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
Tthe_2203	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
Tthe_2213	PWY-6906	chitin derivatives degradation
Tthe_2213	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
Tthe_2213	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
Tthe_2222	PWY-6654	phosphopantothenate biosynthesis III
Tthe_2224	PWY-5155	&beta;-alanine biosynthesis III
Tthe_2229	PWY-3081	L-lysine biosynthesis V
Tthe_2229	PWY-6871	3-methylbutanol biosynthesis
Tthe_2232	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tthe_2233	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tthe_2234	PWY-6556	pyrimidine ribonucleosides salvage II
Tthe_2234	PWY-7181	pyrimidine deoxyribonucleosides degradation
Tthe_2234	PWY-7193	pyrimidine ribonucleosides salvage I
Tthe_2234	PWY-7199	pyrimidine deoxyribonucleosides salvage
Tthe_2240	PWY-5030	L-histidine degradation III
Tthe_2240	PWY-5497	purine nucleobases degradation II (anaerobic)
Tthe_2241	PWY-5030	L-histidine degradation III
Tthe_2244	PWY-5913	TCA cycle VI (obligate autotrophs)
Tthe_2244	PWY-6549	L-glutamine biosynthesis III
Tthe_2244	PWY-6728	methylaspartate cycle
Tthe_2244	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Tthe_2244	PWY-7124	ethylene biosynthesis V (engineered)
Tthe_2244	PWY-7254	TCA cycle VII (acetate-producers)
Tthe_2244	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tthe_2256	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tthe_2256	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tthe_2256	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tthe_2257	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
Tthe_2257	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
Tthe_2257	PWY-6269	adenosylcobalamin salvage from cobinamide II
Tthe_2258	PWY-5443	aminopropanol phosphate biosynthesis I
Tthe_2312	PWY-6823	molybdenum cofactor biosynthesis
Tthe_2322	PWY-6823	molybdenum cofactor biosynthesis
Tthe_2348	PWY-7310	D-glucosaminate degradation
Tthe_2353	PWY-6902	chitin degradation II
Tthe_2357	PWY-7310	D-glucosaminate degradation
Tthe_2358	PWY-7310	D-glucosaminate degradation
Tthe_2382	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tthe_2383	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tthe_2389	PWY-4261	glycerol degradation I
Tthe_2404	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
Tthe_2404	PWY-7248	pectin degradation III
Tthe_2412	PWY-5481	pyruvate fermentation to lactate
Tthe_2412	PWY-6901	superpathway of glucose and xylose degradation
Tthe_2417	PWY-622	starch biosynthesis
Tthe_2419	PWY-6317	galactose degradation I (Leloir pathway)
Tthe_2419	PWY-6527	stachyose degradation
Tthe_2435	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
Tthe_2435	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
Tthe_2435	PWY-6164	3-dehydroquinate biosynthesis I
Tthe_2447	PWY-2201	folate transformations I
Tthe_2447	PWY-3841	folate transformations II
Tthe_2466	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_2466	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tthe_2466	PWY-7242	D-fructuronate degradation
Tthe_2466	PWY-7310	D-glucosaminate degradation
Tthe_2469	PWY-7310	D-glucosaminate degradation
Tthe_2483	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
Tthe_2483	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
Tthe_2483	PWY-7242	D-fructuronate degradation
Tthe_2483	PWY-7310	D-glucosaminate degradation
Tthe_2491	PWY-4261	glycerol degradation I
Tthe_2506	PWY-5971	palmitate biosynthesis II (bacteria and plants)
Tthe_2506	PWY-5973	<i>cis</i>-vaccenate biosynthesis
Tthe_2506	PWY-5989	stearate biosynthesis II (bacteria and plants)
Tthe_2506	PWY-5994	palmitate biosynthesis I (animals and fungi)
Tthe_2506	PWY-6113	superpathway of mycolate biosynthesis
Tthe_2506	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
Tthe_2506	PWY-6519	8-amino-7-oxononanoate biosynthesis I
Tthe_2506	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
Tthe_2506	PWYG-321	mycolate biosynthesis
Tthe_2524	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_2524	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_2526	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
Tthe_2527	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
Tthe_2527	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
Tthe_2527	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
Tthe_2528	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
Tthe_2529	PWY-7183	pyrimidine nucleobases salvage I
Tthe_2537	PWY-7199	pyrimidine deoxyribonucleosides salvage
Tthe_2539	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_2540	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_2540	PWY-5723	Rubisco shunt
Tthe_2541	PWY-1042	glycolysis IV (plant cytosol)
Tthe_2541	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
Tthe_2541	PWY-5484	glycolysis II (from fructose 6-phosphate)
Tthe_2541	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
Tthe_2541	PWY-7385	1,3-propanediol biosynthesis (engineered)
Tthe_2550	PWY-7310	D-glucosaminate degradation
Tthe_2587	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
Tthe_2587	PWY-7177	UTP and CTP dephosphorylation II
Tthe_2587	PWY-7185	UTP and CTP dephosphorylation I
Tthe_2594	PWY-6832	2-aminoethylphosphonate degradation II
Tthe_2597	PWY-702	L-methionine biosynthesis II
Tthe_2636	PWY-6823	molybdenum cofactor biosynthesis
Tthe_2636	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_2636	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_2636	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tthe_2646	PWY-3162	L-tryptophan degradation V (side chain pathway)
Tthe_2646	PWY-5057	L-valine degradation II
Tthe_2646	PWY-5076	L-leucine degradation III
Tthe_2646	PWY-5078	L-isoleucine degradation II
Tthe_2646	PWY-5079	L-phenylalanine degradation III
Tthe_2646	PWY-5082	L-methionine degradation III
Tthe_2646	PWY-5162	2-oxopentenoate degradation
Tthe_2646	PWY-5436	L-threonine degradation IV
Tthe_2646	PWY-5480	pyruvate fermentation to ethanol I
Tthe_2646	PWY-5486	pyruvate fermentation to ethanol II
Tthe_2646	PWY-5751	phenylethanol biosynthesis
Tthe_2646	PWY-6028	acetoin degradation
Tthe_2646	PWY-6313	serotonin degradation
Tthe_2646	PWY-6333	acetaldehyde biosynthesis I
Tthe_2646	PWY-6342	noradrenaline and adrenaline degradation
Tthe_2646	PWY-6587	pyruvate fermentation to ethanol III
Tthe_2646	PWY-6802	salidroside biosynthesis
Tthe_2646	PWY-6871	3-methylbutanol biosynthesis
Tthe_2646	PWY-7013	L-1,2-propanediol degradation
Tthe_2646	PWY-7085	triethylamine degradation
Tthe_2646	PWY-7111	pyruvate fermentation to isobutanol (engineered)
Tthe_2646	PWY-7118	chitin degradation to ethanol
Tthe_2646	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
Tthe_2646	PWY-7396	butanol and isobutanol biosynthesis (engineered)
Tthe_2646	PWY-7557	dehydrodiconiferyl alcohol degradation
Tthe_2681	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Tthe_2681	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
Tthe_2715	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
Tthe_2740	PWY-7052	cyanophycin metabolism
Tthe_2741	PWY-7052	cyanophycin metabolism
Tthe_2742	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
Tthe_2742	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
Tthe_2742	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
Tthe_2744	PWY-6823	molybdenum cofactor biosynthesis
Tthe_2744	PWY-6891	thiazole biosynthesis II (Bacillus)
Tthe_2744	PWY-6892	thiazole biosynthesis I (E. coli)
Tthe_2744	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
Tthe_2745	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
