CL1_0017	PWY-5381	pyridine nucleotide cycling (plants)
CL1_0017	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL1_0017	PWY-6596	adenosine nucleotides degradation I
CL1_0017	PWY-6606	guanosine nucleotides degradation II
CL1_0017	PWY-6607	guanosine nucleotides degradation I
CL1_0017	PWY-6608	guanosine nucleotides degradation III
CL1_0017	PWY-7185	UTP and CTP dephosphorylation I
CL1_0035	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL1_0035	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL1_0035	PWY-6897	thiamin salvage II
CL1_0035	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CL1_0035	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CL1_0035	PWY-6910	hydroxymethylpyrimidine salvage
CL1_0035	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CL1_0035	PWY-7356	thiamin salvage IV (yeast)
CL1_0035	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CL1_0036	PWY-5532	adenosine nucleotides degradation IV
CL1_0038	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CL1_0039	PWY-6123	inosine-5'-phosphate biosynthesis I
CL1_0039	PWY-6124	inosine-5'-phosphate biosynthesis II
CL1_0039	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0040	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0041	PWY-6123	inosine-5'-phosphate biosynthesis I
CL1_0041	PWY-6124	inosine-5'-phosphate biosynthesis II
CL1_0041	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0042	PWY-6167	flavin biosynthesis II (archaea)
CL1_0042	PWY-6168	flavin biosynthesis III (fungi)
CL1_0043	PWY-6167	flavin biosynthesis II (archaea)
CL1_0043	PWY-6168	flavin biosynthesis III (fungi)
CL1_0043	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL1_0044	PWY-6167	flavin biosynthesis II (archaea)
CL1_0044	PWY-6168	flavin biosynthesis III (fungi)
CL1_0044	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0051	PWY-6700	queuosine biosynthesis
CL1_0051	PWY-6711	archaeosine biosynthesis
CL1_0082	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CL1_0082	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CL1_0082	PWY-6268	adenosylcobalamin salvage from cobalamin
CL1_0082	PWY-6269	adenosylcobalamin salvage from cobinamide II
CL1_0084	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CL1_0084	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CL1_0098	PWY-6829	tRNA methylation (yeast)
CL1_0103	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL1_0103	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL1_0103	PWY-6896	thiamin salvage I
CL1_0103	PWY-6897	thiamin salvage II
CL1_0104	PWY-6703	preQ<sub>0</sub> biosynthesis
CL1_0125	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0126	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CL1_0126	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CL1_0129	PWY-6167	flavin biosynthesis II (archaea)
CL1_0180	PWY-6984	lipoate salvage II
CL1_0184	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CL1_0225	PWY-6703	preQ<sub>0</sub> biosynthesis
CL1_0248	PWY-1042	glycolysis IV (plant cytosol)
CL1_0248	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL1_0248	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_0248	PWY-5723	Rubisco shunt
CL1_0248	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_0248	PWY-6886	1-butanol autotrophic biosynthesis
CL1_0248	PWY-6901	superpathway of glucose and xylose degradation
CL1_0248	PWY-7003	glycerol degradation to butanol
CL1_0248	PWY-7124	ethylene biosynthesis V (engineered)
CL1_0248	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL1_0251	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL1_0254	PWY-4981	L-proline biosynthesis II (from arginine)
CL1_0254	PWY-4984	urea cycle
CL1_0254	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CL1_0263	PWY-40	putrescine biosynthesis I
CL1_0263	PWY-6305	putrescine biosynthesis IV
CL1_0270	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL1_0270	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL1_0270	PWY-6896	thiamin salvage I
CL1_0270	PWY-6897	thiamin salvage II
CL1_0291	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CL1_0329	PWY-6614	tetrahydrofolate biosynthesis
CL1_0331	PWY-6148	tetrahydromethanopterin biosynthesis
CL1_0343	PWY-7378	aminopropanol phosphate biosynthesis II
CL1_0345	PWY-6174	mevalonate pathway II (archaea)
CL1_0345	PWY-7391	isoprene biosynthesis II (engineered)
CL1_0345	PWY-7524	mevalonate pathway III (archaea)
CL1_0345	PWY-922	mevalonate pathway I
CL1_0349	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CL1_0349	PWY-7177	UTP and CTP dephosphorylation II
CL1_0349	PWY-7185	UTP and CTP dephosphorylation I
CL1_0354	PWY-181	photorespiration
CL1_0365	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL1_0365	PWY-5686	UMP biosynthesis
CL1_0388	PWY-6349	CDP-archaeol biosynthesis
CL1_0405	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0410	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL1_0412	PWY-5941	glycogen degradation II (eukaryotic)
CL1_0412	PWY-622	starch biosynthesis
CL1_0412	PWY-6731	starch degradation III
CL1_0412	PWY-6737	starch degradation V
CL1_0412	PWY-7238	sucrose biosynthesis II
CL1_0413	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL1_0415	PWY-6749	CMP-legionaminate biosynthesis I
CL1_0416	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL1_0416	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_0416	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0416	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CL1_0416	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL1_0416	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL1_0467	PWY-6749	CMP-legionaminate biosynthesis I
CL1_0469	PWY-5659	GDP-mannose biosynthesis
CL1_0469	PWY-6073	alginate biosynthesis I (algal)
CL1_0469	PWY-6082	alginate biosynthesis II (bacterial)
CL1_0469	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CL1_0471	PWY-3801	sucrose degradation II (sucrose synthase)
CL1_0471	PWY-5054	sorbitol biosynthesis I
CL1_0471	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CL1_0471	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CL1_0471	PWY-5659	GDP-mannose biosynthesis
CL1_0471	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_0471	PWY-621	sucrose degradation III (sucrose invertase)
CL1_0471	PWY-622	starch biosynthesis
CL1_0471	PWY-6531	mannitol cycle
CL1_0471	PWY-6981	chitin biosynthesis
CL1_0471	PWY-7238	sucrose biosynthesis II
CL1_0471	PWY-7347	sucrose biosynthesis III
CL1_0471	PWY-7385	1,3-propanediol biosynthesis (engineered)
CL1_0484	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CL1_0492	PWY-6823	molybdenum cofactor biosynthesis
CL1_0492	PWY-6891	thiazole biosynthesis II (Bacillus)
CL1_0492	PWY-6892	thiazole biosynthesis I (E. coli)
CL1_0492	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CL1_0493	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CL1_0493	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CL1_0493	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CL1_0496	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_0496	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CL1_0496	PWY-6638	sulfolactate degradation III
CL1_0496	PWY-6642	(<i>R</i>)-cysteate degradation
CL1_0496	PWY-6643	coenzyme M biosynthesis II
CL1_0496	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CL1_0496	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CL1_0496	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL1_0508	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_0511	PWY-7183	pyrimidine nucleobases salvage I
CL1_0535	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CL1_0535	PWY-5723	Rubisco shunt
CL1_0546	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CL1_0546	PWY-622	starch biosynthesis
CL1_0566	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CL1_0566	PWY-6174	mevalonate pathway II (archaea)
CL1_0566	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CL1_0566	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CL1_0566	PWY-7102	bisabolene biosynthesis
CL1_0566	PWY-7391	isoprene biosynthesis II (engineered)
CL1_0566	PWY-7524	mevalonate pathway III (archaea)
CL1_0566	PWY-7560	methylerythritol phosphate pathway II
CL1_0566	PWY-922	mevalonate pathway I
CL1_0568	PWY-6174	mevalonate pathway II (archaea)
CL1_0568	PWY-7524	mevalonate pathway III (archaea)
CL1_0569	PWY-3821	galactose degradation III
CL1_0569	PWY-6174	mevalonate pathway II (archaea)
CL1_0569	PWY-6317	galactose degradation I (Leloir pathway)
CL1_0569	PWY-6527	stachyose degradation
CL1_0569	PWY-7391	isoprene biosynthesis II (engineered)
CL1_0569	PWY-922	mevalonate pathway I
CL1_0571	PWY-4202	arsenate detoxification I (glutaredoxin)
CL1_0571	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL1_0571	PWY-6608	guanosine nucleotides degradation III
CL1_0571	PWY-6609	adenine and adenosine salvage III
CL1_0571	PWY-6611	adenine and adenosine salvage V
CL1_0571	PWY-6620	guanine and guanosine salvage
CL1_0571	PWY-6627	salinosporamide A biosynthesis
CL1_0571	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CL1_0571	PWY-7179	purine deoxyribonucleosides degradation I
CL1_0571	PWY-7179-1	purine deoxyribonucleosides degradation
CL1_0587	PWY-1042	glycolysis IV (plant cytosol)
CL1_0587	PWY-1622	formaldehyde assimilation I (serine pathway)
CL1_0587	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL1_0587	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_0587	PWY-5723	Rubisco shunt
CL1_0587	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_0587	PWY-6886	1-butanol autotrophic biosynthesis
CL1_0587	PWY-6901	superpathway of glucose and xylose degradation
CL1_0587	PWY-7003	glycerol degradation to butanol
CL1_0587	PWY-7124	ethylene biosynthesis V (engineered)
CL1_0587	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL1_0600	PWY-7205	CMP phosphorylation
CL1_0603	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0633	PWY-6832	2-aminoethylphosphonate degradation II
CL1_0654	PWY-4381	fatty acid biosynthesis initiation I
CL1_0654	PWY-5743	3-hydroxypropanoate cycle
CL1_0654	PWY-5744	glyoxylate assimilation
CL1_0654	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL1_0654	PWY-6679	jadomycin biosynthesis
CL1_0654	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CL1_0655	PWY-6339	syringate degradation
CL1_0657	PWY-6339	syringate degradation
CL1_0707	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CL1_0718	PWY-6349	CDP-archaeol biosynthesis
CL1_0735	PWY-6482	diphthamide biosynthesis (archaea)
CL1_0735	PWY-7546	diphthamide biosynthesis (eukaryotes)
CL1_0765	PWY-7285	methylwyosine biosynthesis
CL1_0765	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_0776	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0779	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0780	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0781	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0781	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0781	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0782	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0782	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0782	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0783	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0783	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0783	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0784	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0785	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0785	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0785	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0786	PWY-6123	inosine-5'-phosphate biosynthesis I
CL1_0786	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0788	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0788	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0788	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0792	PWY-6123	inosine-5'-phosphate biosynthesis I
CL1_0792	PWY-6124	inosine-5'-phosphate biosynthesis II
CL1_0792	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_0793	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CL1_0793	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CL1_0793	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CL1_0793	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CL1_0794	PWY-1881	formate oxidation to CO<sub>2</sub>
CL1_0794	PWY-5497	purine nucleobases degradation II (anaerobic)
CL1_0794	PWY-6696	oxalate degradation III
CL1_0795	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CL1_0796	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CL1_0796	PWY-6891	thiazole biosynthesis II (Bacillus)
CL1_0796	PWY-6892	thiazole biosynthesis I (E. coli)
CL1_0797	PWY-5316	nicotine biosynthesis
CL1_0797	PWY-5381	pyridine nucleotide cycling (plants)
CL1_0797	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CL1_0797	PWY-7342	superpathway of nicotine biosynthesis
CL1_0799	PWY-5316	nicotine biosynthesis
CL1_0799	PWY-7342	superpathway of nicotine biosynthesis
CL1_0800	PWY-5316	nicotine biosynthesis
CL1_0800	PWY-7342	superpathway of nicotine biosynthesis
CL1_0803	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CL1_0803	PWY-6596	adenosine nucleotides degradation I
CL1_0803	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0808	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_0818	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0818	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0818	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0830	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
CL1_0850	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CL1_0862	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL1_0862	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_0862	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL1_0862	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL1_0862	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0862	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_0862	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_0862	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CL1_0882	PWY-622	starch biosynthesis
CL1_0888	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CL1_0891	PWY-6749	CMP-legionaminate biosynthesis I
CL1_0909	PWY-381	nitrate reduction II (assimilatory)
CL1_0909	PWY-5675	nitrate reduction V (assimilatory)
CL1_0909	PWY-6549	L-glutamine biosynthesis III
CL1_0909	PWY-6963	ammonia assimilation cycle I
CL1_0909	PWY-6964	ammonia assimilation cycle II
CL1_0918	PWY-5686	UMP biosynthesis
CL1_0929	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0930	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_0940	PWY-6834	spermidine biosynthesis III
CL1_0954	PWY-5663	tetrahydrobiopterin biosynthesis I
CL1_0954	PWY-5664	tetrahydrobiopterin biosynthesis II
CL1_0954	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL1_0954	PWY-6703	preQ<sub>0</sub> biosynthesis
CL1_0954	PWY-6983	tetrahydrobiopterin biosynthesis III
CL1_0954	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CL1_0973	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CL1_0978	PWY-3581	(<i>S</i>)-reticuline biosynthesis I
CL1_0978	PWY-5254	methanofuran biosynthesis
CL1_0978	PWY-5474	hydroxycinnamic acid tyramine amides biosynthesis
CL1_0978	PWY-6133	(S)-reticuline biosynthesis II
CL1_0978	PWY-6802	salidroside biosynthesis
CL1_0978	PWY-7297	octopamine biosynthesis
CL1_0982	PWY-5278	sulfite oxidation III
CL1_0982	PWY-5340	sulfate activation for sulfonation
CL1_0982	PWY-6683	sulfate reduction III (assimilatory)
CL1_0982	PWY-6932	selenate reduction
CL1_0988	PWY-5340	sulfate activation for sulfonation
CL1_1036	PWY-5392	reductive TCA cycle II
CL1_1036	PWY-5537	pyruvate fermentation to acetate V
CL1_1036	PWY-5538	pyruvate fermentation to acetate VI
CL1_1036	PWY-5690	TCA cycle II (plants and fungi)
CL1_1036	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_1036	PWY-6728	methylaspartate cycle
CL1_1036	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL1_1036	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1040	PWY-842	starch degradation I
CL1_1042	PWY-6938	NADH repair
CL1_1083	PWY-1042	glycolysis IV (plant cytosol)
CL1_1083	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_1083	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_1083	PWY-7003	glycerol degradation to butanol
CL1_1086	PWY-5392	reductive TCA cycle II
CL1_1086	PWY-5537	pyruvate fermentation to acetate V
CL1_1086	PWY-5538	pyruvate fermentation to acetate VI
CL1_1086	PWY-5690	TCA cycle II (plants and fungi)
CL1_1086	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_1086	PWY-6728	methylaspartate cycle
CL1_1086	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL1_1086	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1089	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CL1_1089	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CL1_1089	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CL1_1102	PWY-6823	molybdenum cofactor biosynthesis
CL1_1106	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CL1_1117	PWY-1042	glycolysis IV (plant cytosol)
CL1_1117	PWY-1622	formaldehyde assimilation I (serine pathway)
CL1_1117	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL1_1117	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_1117	PWY-5723	Rubisco shunt
CL1_1117	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_1117	PWY-6886	1-butanol autotrophic biosynthesis
CL1_1117	PWY-6901	superpathway of glucose and xylose degradation
CL1_1117	PWY-7003	glycerol degradation to butanol
CL1_1117	PWY-7124	ethylene biosynthesis V (engineered)
CL1_1117	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL1_1119	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CL1_1148	PWY-1881	formate oxidation to CO<sub>2</sub>
CL1_1148	PWY-5497	purine nucleobases degradation II (anaerobic)
CL1_1148	PWY-6696	oxalate degradation III
CL1_1177	PWY-7533	gliotoxin biosynthesis
CL1_1181	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CL1_1181	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CL1_1182	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_1183	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CL1_1183	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CL1_1183	PWY-6268	adenosylcobalamin salvage from cobalamin
CL1_1183	PWY-6269	adenosylcobalamin salvage from cobinamide II
CL1_1192	PWY-6823	molybdenum cofactor biosynthesis
CL1_1196	PWY-6654	phosphopantothenate biosynthesis III
CL1_1199	PWY-5686	UMP biosynthesis
CL1_1211	PWY-6700	queuosine biosynthesis
CL1_1224	PWY-5839	menaquinol-7 biosynthesis
CL1_1224	PWY-5844	menaquinol-9 biosynthesis
CL1_1224	PWY-5849	menaquinol-6 biosynthesis
CL1_1224	PWY-5890	menaquinol-10 biosynthesis
CL1_1224	PWY-5891	menaquinol-11 biosynthesis
CL1_1224	PWY-5892	menaquinol-12 biosynthesis
CL1_1224	PWY-5895	menaquinol-13 biosynthesis
CL1_1259	PWY-6654	phosphopantothenate biosynthesis III
CL1_1275	PWY-842	starch degradation I
CL1_1284	PWY-6749	CMP-legionaminate biosynthesis I
CL1_1285	PWY-3781	aerobic respiration I (cytochrome c)
CL1_1285	PWY-4521	arsenite oxidation I (respiratory)
CL1_1285	PWY-6692	Fe(II) oxidation
CL1_1285	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CL1_1294	PWY-5686	UMP biosynthesis
CL1_1295	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CL1_1295	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CL1_1295	PWY-6897	thiamin salvage II
CL1_1295	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CL1_1295	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CL1_1295	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
CL1_1295	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CL1_1310	PWY-6689	tRNA splicing
CL1_1315	PWY-6829	tRNA methylation (yeast)
CL1_1315	PWY-7285	methylwyosine biosynthesis
CL1_1315	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_1317	PWY-6823	molybdenum cofactor biosynthesis
CL1_1329	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CL1_1341	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CL1_1341	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CL1_1341	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CL1_1344	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL1_1347	PWY-6823	molybdenum cofactor biosynthesis
CL1_1355	PWY-5381	pyridine nucleotide cycling (plants)
CL1_1359	PWY-101	photosynthesis light reactions
CL1_1359	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CL1_1363	PWY-6482	diphthamide biosynthesis (archaea)
CL1_1364	PWY-6703	preQ<sub>0</sub> biosynthesis
CL1_1379	PWY-3821	galactose degradation III
CL1_1379	PWY-6317	galactose degradation I (Leloir pathway)
CL1_1379	PWY-6527	stachyose degradation
CL1_1390	PWY-5796	malonate decarboxylase activation
CL1_1398	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CL1_1398	PWY-5532	adenosine nucleotides degradation IV
CL1_1398	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CL1_1403	PWY-4381	fatty acid biosynthesis initiation I
CL1_1416	PWY-5392	reductive TCA cycle II
CL1_1416	PWY-5537	pyruvate fermentation to acetate V
CL1_1416	PWY-5538	pyruvate fermentation to acetate VI
CL1_1416	PWY-5690	TCA cycle II (plants and fungi)
CL1_1416	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_1416	PWY-6728	methylaspartate cycle
CL1_1416	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL1_1416	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1425	PWY-40	putrescine biosynthesis I
CL1_1425	PWY-43	putrescine biosynthesis II
CL1_1425	PWY-6305	putrescine biosynthesis IV
CL1_1425	PWY-6834	spermidine biosynthesis III
CL1_1439	PWY-101	photosynthesis light reactions
CL1_1439	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CL1_1442	PWY-6829	tRNA methylation (yeast)
CL1_1470	PWY-6167	flavin biosynthesis II (archaea)
CL1_1470	PWY-6168	flavin biosynthesis III (fungi)
CL1_1472	PWY-5686	UMP biosynthesis
CL1_1474	PWY-2301	<i>myo</i>-inositol biosynthesis
CL1_1474	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
CL1_1474	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
CL1_1474	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
CL1_1474	PWY-6664	di-myo-inositol phosphate biosynthesis
CL1_1476	PWY-6482	diphthamide biosynthesis (archaea)
CL1_1476	PWY-7546	diphthamide biosynthesis (eukaryotes)
CL1_1487	PWY-5532	adenosine nucleotides degradation IV
CL1_1487	PWY-5723	Rubisco shunt
CL1_1488	PWY-7199	pyrimidine deoxyribonucleosides salvage
CL1_1522	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CL1_1523	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CL1_1523	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CL1_1560	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL1_1560	PWY-6148	tetrahydromethanopterin biosynthesis
CL1_1560	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CL1_1560	PWY-6898	thiamin salvage III
CL1_1560	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CL1_1560	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CL1_1560	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CL1_1571	PWY-5743	3-hydroxypropanoate cycle
CL1_1571	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL1_1571	PWY-6728	methylaspartate cycle
CL1_1571	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1587	PWY-5392	reductive TCA cycle II
CL1_1587	PWY-5483	pyruvate fermentation to acetate III
CL1_1587	PWY-5535	acetate formation from acetyl-CoA II
CL1_1587	PWY-5537	pyruvate fermentation to acetate V
CL1_1587	PWY-5538	pyruvate fermentation to acetate VI
CL1_1587	PWY-5690	TCA cycle II (plants and fungi)
CL1_1587	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_1587	PWY-6728	methylaspartate cycle
CL1_1587	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL1_1587	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1592	PWY-6823	molybdenum cofactor biosynthesis
CL1_1593	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CL1_1611	PWY-5743	3-hydroxypropanoate cycle
CL1_1611	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CL1_1611	PWY-6728	methylaspartate cycle
CL1_1611	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1622	PWY-6349	CDP-archaeol biosynthesis
CL1_1626	PWY-5532	adenosine nucleotides degradation IV
CL1_1645	PWY-6349	CDP-archaeol biosynthesis
CL1_1657	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_1658	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL1_1658	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL1_1667	PWY-5392	reductive TCA cycle II
CL1_1667	PWY-5537	pyruvate fermentation to acetate V
CL1_1667	PWY-5538	pyruvate fermentation to acetate VI
CL1_1667	PWY-5690	TCA cycle II (plants and fungi)
CL1_1667	PWY-5913	TCA cycle VI (obligate autotrophs)
CL1_1667	PWY-6728	methylaspartate cycle
CL1_1667	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CL1_1667	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CL1_1680	PWY-1042	glycolysis IV (plant cytosol)
CL1_1680	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_1680	PWY-6886	1-butanol autotrophic biosynthesis
CL1_1680	PWY-6901	superpathway of glucose and xylose degradation
CL1_1680	PWY-7003	glycerol degradation to butanol
CL1_1744	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL1_1744	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CL1_1744	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_1744	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_1744	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CL1_1744	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL1_1744	PWY-7205	CMP phosphorylation
CL1_1744	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL1_1744	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_1744	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CL1_1744	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CL1_1744	PWY-7224	purine deoxyribonucleosides salvage
CL1_1744	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_1744	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CL1_1748	PWY-6829	tRNA methylation (yeast)
CL1_1748	PWY-7285	methylwyosine biosynthesis
CL1_1748	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_1749	PWY-7294	xylose degradation IV
CL1_1749	PWY-7295	L-arabinose degradation IV
CL1_1772	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CL1_1772	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CL1_1773	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CL1_1773	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CL1_1773	PWY-7185	UTP and CTP dephosphorylation I
CL1_1773	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CL1_1773	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CL1_1777	PWY-6123	inosine-5'-phosphate biosynthesis I
CL1_1777	PWY-6124	inosine-5'-phosphate biosynthesis II
CL1_1777	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_1777	PWY-7234	inosine-5'-phosphate biosynthesis III
CL1_1788	PWY-6825	phosphatidylcholine biosynthesis V
CL1_1796	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_1807	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CL1_1807	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
CL1_1869	PWY-1622	formaldehyde assimilation I (serine pathway)
CL1_1869	PWY-181	photorespiration
CL1_1869	PWY-2161	folate polyglutamylation
CL1_1869	PWY-2201	folate transformations I
CL1_1869	PWY-3661	glycine betaine degradation I
CL1_1869	PWY-3661-1	glycine betaine degradation II (mammalian)
CL1_1869	PWY-3841	folate transformations II
CL1_1869	PWY-5497	purine nucleobases degradation II (anaerobic)
CL1_1883	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL1_1883	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CL1_1896	PWY-1042	glycolysis IV (plant cytosol)
CL1_1896	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CL1_1896	PWY-5484	glycolysis II (from fructose 6-phosphate)
CL1_1896	PWY-5723	Rubisco shunt
CL1_1896	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CL1_1896	PWY-6886	1-butanol autotrophic biosynthesis
CL1_1896	PWY-6901	superpathway of glucose and xylose degradation
CL1_1896	PWY-7003	glycerol degradation to butanol
CL1_1896	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CL1_1896	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CL1_1899	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CL1_1905	PWY-6749	CMP-legionaminate biosynthesis I
CL1_1922	PWY-5663	tetrahydrobiopterin biosynthesis I
CL1_1922	PWY-5664	tetrahydrobiopterin biosynthesis II
CL1_1922	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CL1_1922	PWY-6703	preQ<sub>0</sub> biosynthesis
CL1_1922	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CL1_1922	PWY-6983	tetrahydrobiopterin biosynthesis III
CL1_1922	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CL1_1935	PWY-6829	tRNA methylation (yeast)
CL1_1935	PWY-7285	methylwyosine biosynthesis
CL1_1935	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_1972	PWY-6654	phosphopantothenate biosynthesis III
CL1_2010	PWY-6823	molybdenum cofactor biosynthesis
CL1_2013	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CL1_2013	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CL1_2013	PWY-6269	adenosylcobalamin salvage from cobinamide II
CL1_2019	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CL1_2019	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CL1_2019	PWY-6269	adenosylcobalamin salvage from cobinamide II
CL1_2027	PWY-6829	tRNA methylation (yeast)
CL1_2027	PWY-7285	methylwyosine biosynthesis
CL1_2027	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_2028	PWY-6829	tRNA methylation (yeast)
CL1_2028	PWY-7285	methylwyosine biosynthesis
CL1_2028	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CL1_2035	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CL1_2035	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
