TON_0038	PWY-6339	syringate degradation
TON_0040	PWY-6339	syringate degradation
TON_0041	PWY-4381	fatty acid biosynthesis initiation I
TON_0041	PWY-5743	3-hydroxypropanoate cycle
TON_0041	PWY-5744	glyoxylate assimilation
TON_0041	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TON_0041	PWY-6679	jadomycin biosynthesis
TON_0041	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TON_0057	PWY-101	photosynthesis light reactions
TON_0057	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TON_0061	PWY-6832	2-aminoethylphosphonate degradation II
TON_0090	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0093	PWY-7205	CMP phosphorylation
TON_0111	PWY-1042	glycolysis IV (plant cytosol)
TON_0111	PWY-1622	formaldehyde assimilation I (serine pathway)
TON_0111	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TON_0111	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_0111	PWY-5723	Rubisco shunt
TON_0111	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_0111	PWY-6886	1-butanol autotrophic biosynthesis
TON_0111	PWY-6901	superpathway of glucose and xylose degradation
TON_0111	PWY-7003	glycerol degradation to butanol
TON_0111	PWY-7124	ethylene biosynthesis V (engineered)
TON_0111	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TON_0131	PWY-4202	arsenate detoxification I (glutaredoxin)
TON_0131	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TON_0131	PWY-6608	guanosine nucleotides degradation III
TON_0131	PWY-6609	adenine and adenosine salvage III
TON_0131	PWY-6611	adenine and adenosine salvage V
TON_0131	PWY-6620	guanine and guanosine salvage
TON_0131	PWY-6627	salinosporamide A biosynthesis
TON_0131	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
TON_0131	PWY-7179	purine deoxyribonucleosides degradation I
TON_0131	PWY-7179-1	purine deoxyribonucleosides degradation
TON_0133	PWY-3821	galactose degradation III
TON_0133	PWY-6174	mevalonate pathway II (archaea)
TON_0133	PWY-6317	galactose degradation I (Leloir pathway)
TON_0133	PWY-6527	stachyose degradation
TON_0133	PWY-7391	isoprene biosynthesis II (engineered)
TON_0133	PWY-922	mevalonate pathway I
TON_0134	PWY-6174	mevalonate pathway II (archaea)
TON_0134	PWY-7524	mevalonate pathway III (archaea)
TON_0135	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
TON_0135	PWY-6174	mevalonate pathway II (archaea)
TON_0135	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
TON_0135	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
TON_0135	PWY-7102	bisabolene biosynthesis
TON_0135	PWY-7391	isoprene biosynthesis II (engineered)
TON_0135	PWY-7524	mevalonate pathway III (archaea)
TON_0135	PWY-7560	methylerythritol phosphate pathway II
TON_0135	PWY-922	mevalonate pathway I
TON_0153	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
TON_0153	PWY-622	starch biosynthesis
TON_0168	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TON_0168	PWY-5723	Rubisco shunt
TON_0184	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_0189	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TON_0191	PWY-5941	glycogen degradation II (eukaryotic)
TON_0191	PWY-622	starch biosynthesis
TON_0191	PWY-6731	starch degradation III
TON_0191	PWY-6737	starch degradation V
TON_0191	PWY-7238	sucrose biosynthesis II
TON_0192	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TON_0195	PWY-6749	CMP-legionaminate biosynthesis I
TON_0196	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_0196	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_0196	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_0196	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TON_0196	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TON_0196	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_0202	PWY-4261	glycerol degradation I
TON_0244	PWY-6749	CMP-legionaminate biosynthesis I
TON_0245	PWY-5659	GDP-mannose biosynthesis
TON_0245	PWY-6073	alginate biosynthesis I (algal)
TON_0245	PWY-6082	alginate biosynthesis II (bacterial)
TON_0245	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TON_0247	PWY-3801	sucrose degradation II (sucrose synthase)
TON_0247	PWY-5054	sorbitol biosynthesis I
TON_0247	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
TON_0247	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TON_0247	PWY-5659	GDP-mannose biosynthesis
TON_0247	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_0247	PWY-621	sucrose degradation III (sucrose invertase)
TON_0247	PWY-622	starch biosynthesis
TON_0247	PWY-6531	mannitol cycle
TON_0247	PWY-6981	chitin biosynthesis
TON_0247	PWY-7238	sucrose biosynthesis II
TON_0247	PWY-7347	sucrose biosynthesis III
TON_0247	PWY-7385	1,3-propanediol biosynthesis (engineered)
TON_0264	PWY-5964	guanylyl molybdenum cofactor biosynthesis
TON_0281	PWY-1881	formate oxidation to CO<sub>2</sub>
TON_0281	PWY-5497	purine nucleobases degradation II (anaerobic)
TON_0281	PWY-6696	oxalate degradation III
TON_0289	PWY-6823	molybdenum cofactor biosynthesis
TON_0289	PWY-6891	thiazole biosynthesis II (Bacillus)
TON_0289	PWY-6892	thiazole biosynthesis I (E. coli)
TON_0289	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TON_0290	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TON_0290	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TON_0290	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TON_0311	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_0314	PWY-7183	pyrimidine nucleobases salvage I
TON_0316	PWY-6349	CDP-archaeol biosynthesis
TON_0336	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TON_0336	PWY-5686	UMP biosynthesis
TON_0347	PWY-181	photorespiration
TON_0352	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TON_0352	PWY-7177	UTP and CTP dephosphorylation II
TON_0352	PWY-7185	UTP and CTP dephosphorylation I
TON_0359	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TON_0386	PWY-6614	tetrahydrofolate biosynthesis
TON_0388	PWY-6148	tetrahydromethanopterin biosynthesis
TON_0397	PWY-7378	aminopropanol phosphate biosynthesis II
TON_0399	PWY-6174	mevalonate pathway II (archaea)
TON_0399	PWY-7391	isoprene biosynthesis II (engineered)
TON_0399	PWY-7524	mevalonate pathway III (archaea)
TON_0399	PWY-922	mevalonate pathway I
TON_0419	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TON_0419	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TON_0419	PWY-6896	thiamin salvage I
TON_0419	PWY-6897	thiamin salvage II
TON_0425	PWY-40	putrescine biosynthesis I
TON_0425	PWY-6305	putrescine biosynthesis IV
TON_0435	PWY-4981	L-proline biosynthesis II (from arginine)
TON_0435	PWY-4984	urea cycle
TON_0435	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TON_0437	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_0442	PWY-1042	glycolysis IV (plant cytosol)
TON_0442	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TON_0442	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_0442	PWY-5723	Rubisco shunt
TON_0442	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_0442	PWY-6886	1-butanol autotrophic biosynthesis
TON_0442	PWY-6901	superpathway of glucose and xylose degradation
TON_0442	PWY-7003	glycerol degradation to butanol
TON_0442	PWY-7124	ethylene biosynthesis V (engineered)
TON_0442	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TON_0458	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_0501	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
TON_0504	PWY-6984	lipoate salvage II
TON_0506	PWY-2941	L-lysine biosynthesis II
TON_0506	PWY-2942	L-lysine biosynthesis III
TON_0506	PWY-5097	L-lysine biosynthesis VI
TON_0539	PWY-1881	formate oxidation to CO<sub>2</sub>
TON_0539	PWY-5497	purine nucleobases degradation II (anaerobic)
TON_0539	PWY-6696	oxalate degradation III
TON_0557	PWY-6167	flavin biosynthesis II (archaea)
TON_0560	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TON_0560	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
TON_0562	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0590	PWY-5381	pyridine nucleotide cycling (plants)
TON_0590	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TON_0590	PWY-6596	adenosine nucleotides degradation I
TON_0590	PWY-6606	guanosine nucleotides degradation II
TON_0590	PWY-6607	guanosine nucleotides degradation I
TON_0590	PWY-6608	guanosine nucleotides degradation III
TON_0590	PWY-7185	UTP and CTP dephosphorylation I
TON_0607	PWY-6167	flavin biosynthesis II (archaea)
TON_0607	PWY-6168	flavin biosynthesis III (fungi)
TON_0608	PWY-6167	flavin biosynthesis II (archaea)
TON_0608	PWY-6168	flavin biosynthesis III (fungi)
TON_0608	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TON_0609	PWY-6167	flavin biosynthesis II (archaea)
TON_0609	PWY-6168	flavin biosynthesis III (fungi)
TON_0609	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0617	PWY-6700	queuosine biosynthesis
TON_0617	PWY-6711	archaeosine biosynthesis
TON_0635	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TON_0635	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TON_0635	PWY-6268	adenosylcobalamin salvage from cobalamin
TON_0635	PWY-6269	adenosylcobalamin salvage from cobinamide II
TON_0637	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TON_0637	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TON_0648	PWY-6829	tRNA methylation (yeast)
TON_0653	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TON_0653	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TON_0653	PWY-6896	thiamin salvage I
TON_0653	PWY-6897	thiamin salvage II
TON_0654	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_0669	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TON_0669	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TON_0673	PWY-6829	tRNA methylation (yeast)
TON_0673	PWY-7285	methylwyosine biosynthesis
TON_0673	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_0675	PWY-6829	tRNA methylation (yeast)
TON_0675	PWY-7285	methylwyosine biosynthesis
TON_0675	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_0682	PWY-6482	diphthamide biosynthesis (archaea)
TON_0682	PWY-7546	diphthamide biosynthesis (eukaryotes)
TON_0684	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TON_0684	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TON_0684	PWY-6269	adenosylcobalamin salvage from cobinamide II
TON_0688	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TON_0688	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TON_0688	PWY-6269	adenosylcobalamin salvage from cobinamide II
TON_0691	PWY-6823	molybdenum cofactor biosynthesis
TON_0718	PWY-6654	phosphopantothenate biosynthesis III
TON_0748	PWY-6829	tRNA methylation (yeast)
TON_0748	PWY-7285	methylwyosine biosynthesis
TON_0748	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_0757	PWY-5663	tetrahydrobiopterin biosynthesis I
TON_0757	PWY-5664	tetrahydrobiopterin biosynthesis II
TON_0757	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TON_0757	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_0757	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TON_0757	PWY-6983	tetrahydrobiopterin biosynthesis III
TON_0757	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TON_0774	PWY-6749	CMP-legionaminate biosynthesis I
TON_0780	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0785	PWY-1042	glycolysis IV (plant cytosol)
TON_0785	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TON_0785	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_0785	PWY-5723	Rubisco shunt
TON_0785	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_0785	PWY-6886	1-butanol autotrophic biosynthesis
TON_0785	PWY-6901	superpathway of glucose and xylose degradation
TON_0785	PWY-7003	glycerol degradation to butanol
TON_0785	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TON_0785	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TON_0801	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TON_0801	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TON_0821	PWY-1622	formaldehyde assimilation I (serine pathway)
TON_0821	PWY-181	photorespiration
TON_0821	PWY-2161	folate polyglutamylation
TON_0821	PWY-2201	folate transformations I
TON_0821	PWY-3661	glycine betaine degradation I
TON_0821	PWY-3661-1	glycine betaine degradation II (mammalian)
TON_0821	PWY-3841	folate transformations II
TON_0821	PWY-5497	purine nucleobases degradation II (anaerobic)
TON_0888	PWY-3341	L-proline biosynthesis III
TON_0888	PWY-4981	L-proline biosynthesis II (from arginine)
TON_0888	PWY-6344	L-ornithine degradation II (Stickland reaction)
TON_0902	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TON_0902	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TON_0911	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0929	PWY-6123	inosine-5'-phosphate biosynthesis I
TON_0929	PWY-6124	inosine-5'-phosphate biosynthesis II
TON_0929	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_0929	PWY-7234	inosine-5'-phosphate biosynthesis III
TON_0933	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_0933	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_0933	PWY-7185	UTP and CTP dephosphorylation I
TON_0933	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TON_0933	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_0934	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TON_0934	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TON_0945	PWY-7294	xylose degradation IV
TON_0945	PWY-7295	L-arabinose degradation IV
TON_0947	PWY-6829	tRNA methylation (yeast)
TON_0947	PWY-7285	methylwyosine biosynthesis
TON_0947	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_0951	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_0951	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TON_0951	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_0951	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_0951	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TON_0951	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TON_0951	PWY-7205	CMP phosphorylation
TON_0951	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_0951	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_0951	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TON_0951	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_0951	PWY-7224	purine deoxyribonucleosides salvage
TON_0951	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_0951	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TON_0990	PWY-1042	glycolysis IV (plant cytosol)
TON_0990	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_0990	PWY-6886	1-butanol autotrophic biosynthesis
TON_0990	PWY-6901	superpathway of glucose and xylose degradation
TON_0990	PWY-7003	glycerol degradation to butanol
TON_1001	PWY-5392	reductive TCA cycle II
TON_1001	PWY-5537	pyruvate fermentation to acetate V
TON_1001	PWY-5538	pyruvate fermentation to acetate VI
TON_1001	PWY-5690	TCA cycle II (plants and fungi)
TON_1001	PWY-5913	TCA cycle VI (obligate autotrophs)
TON_1001	PWY-6728	methylaspartate cycle
TON_1001	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TON_1001	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1011	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TON_1011	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TON_1012	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_1018	PWY-5372	carbon tetrachloride degradation II
TON_1018	PWY-6780	hydrogen production VI
TON_1047	PWY-6349	CDP-archaeol biosynthesis
TON_1062	PWY-5532	adenosine nucleotides degradation IV
TON_1065	PWY-6349	CDP-archaeol biosynthesis
TON_1074	PWY-5743	3-hydroxypropanoate cycle
TON_1074	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TON_1074	PWY-6728	methylaspartate cycle
TON_1074	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1090	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TON_1091	PWY-6823	molybdenum cofactor biosynthesis
TON_1097	PWY-5392	reductive TCA cycle II
TON_1097	PWY-5483	pyruvate fermentation to acetate III
TON_1097	PWY-5535	acetate formation from acetyl-CoA II
TON_1097	PWY-5537	pyruvate fermentation to acetate V
TON_1097	PWY-5538	pyruvate fermentation to acetate VI
TON_1097	PWY-5690	TCA cycle II (plants and fungi)
TON_1097	PWY-5913	TCA cycle VI (obligate autotrophs)
TON_1097	PWY-6728	methylaspartate cycle
TON_1097	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TON_1097	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1110	PWY-5743	3-hydroxypropanoate cycle
TON_1110	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TON_1110	PWY-6728	methylaspartate cycle
TON_1110	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1124	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TON_1124	PWY-6148	tetrahydromethanopterin biosynthesis
TON_1124	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TON_1124	PWY-6898	thiamin salvage III
TON_1124	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TON_1124	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TON_1124	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TON_1129	PWY-3341	L-proline biosynthesis III
TON_1129	PWY-4981	L-proline biosynthesis II (from arginine)
TON_1129	PWY-6344	L-ornithine degradation II (Stickland reaction)
TON_1131	PWY-6891	thiazole biosynthesis II (Bacillus)
TON_1131	PWY-6892	thiazole biosynthesis I (E. coli)
TON_1131	PWY-7560	methylerythritol phosphate pathway II
TON_1133	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TON_1133	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TON_1133	PWY-6164	3-dehydroquinate biosynthesis I
TON_1134	PWY-6164	3-dehydroquinate biosynthesis I
TON_1135	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TON_1135	PWY-6416	quinate degradation II
TON_1135	PWY-6707	gallate biosynthesis
TON_1136	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TON_1137	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TON_1138	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TON_1139	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TON_1140	PWY-3461	L-tyrosine biosynthesis II
TON_1140	PWY-3462	L-phenylalanine biosynthesis II
TON_1140	PWY-6120	L-tyrosine biosynthesis III
TON_1140	PWY-6627	salinosporamide A biosynthesis
TON_1211	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TON_1211	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TON_1212	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TON_1233	PWY-7199	pyrimidine deoxyribonucleosides salvage
TON_1234	PWY-5532	adenosine nucleotides degradation IV
TON_1234	PWY-5723	Rubisco shunt
TON_1247	PWY-6482	diphthamide biosynthesis (archaea)
TON_1247	PWY-7546	diphthamide biosynthesis (eukaryotes)
TON_1249	PWY-2301	<i>myo</i>-inositol biosynthesis
TON_1249	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
TON_1249	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
TON_1249	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
TON_1249	PWY-6664	di-myo-inositol phosphate biosynthesis
TON_1251	PWY-5686	UMP biosynthesis
TON_1253	PWY-6167	flavin biosynthesis II (archaea)
TON_1253	PWY-6168	flavin biosynthesis III (fungi)
TON_1263	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_1280	PWY-3821	galactose degradation III
TON_1280	PWY-6317	galactose degradation I (Leloir pathway)
TON_1280	PWY-6527	stachyose degradation
TON_1289	PWY-5796	malonate decarboxylase activation
TON_1296	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
TON_1296	PWY-5532	adenosine nucleotides degradation IV
TON_1296	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TON_1301	PWY-4381	fatty acid biosynthesis initiation I
TON_1313	PWY-5392	reductive TCA cycle II
TON_1313	PWY-5537	pyruvate fermentation to acetate V
TON_1313	PWY-5538	pyruvate fermentation to acetate VI
TON_1313	PWY-5690	TCA cycle II (plants and fungi)
TON_1313	PWY-5913	TCA cycle VI (obligate autotrophs)
TON_1313	PWY-6728	methylaspartate cycle
TON_1313	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TON_1313	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1319	PWY-6167	flavin biosynthesis II (archaea)
TON_1323	PWY-40	putrescine biosynthesis I
TON_1323	PWY-43	putrescine biosynthesis II
TON_1323	PWY-6305	putrescine biosynthesis IV
TON_1323	PWY-6834	spermidine biosynthesis III
TON_1336	PWY-101	photosynthesis light reactions
TON_1336	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TON_1339	PWY-6829	tRNA methylation (yeast)
TON_1353	PWY-6823	molybdenum cofactor biosynthesis
TON_1362	PWY-5381	pyridine nucleotide cycling (plants)
TON_1365	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TON_1365	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TON_1365	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TON_1368	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_1372	PWY-6482	diphthamide biosynthesis (archaea)
TON_1376	PWY-101	photosynthesis light reactions
TON_1376	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TON_1397	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TON_1410	PWY-6823	molybdenum cofactor biosynthesis
TON_1412	PWY-6829	tRNA methylation (yeast)
TON_1412	PWY-7285	methylwyosine biosynthesis
TON_1412	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_1417	PWY-6689	tRNA splicing
TON_1436	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TON_1436	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TON_1436	PWY-6897	thiamin salvage II
TON_1436	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TON_1436	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TON_1436	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TON_1436	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TON_1437	PWY-5686	UMP biosynthesis
TON_1439	PWY-6558	heparan sulfate biosynthesis (late stages)
TON_1445	PWY-6749	CMP-legionaminate biosynthesis I
TON_1451	PWY-842	starch degradation I
TON_1465	PWY-6654	phosphopantothenate biosynthesis III
TON_1505	PWY-6700	queuosine biosynthesis
TON_1509	PWY-5839	menaquinol-7 biosynthesis
TON_1509	PWY-5844	menaquinol-9 biosynthesis
TON_1509	PWY-5849	menaquinol-6 biosynthesis
TON_1509	PWY-5890	menaquinol-10 biosynthesis
TON_1509	PWY-5891	menaquinol-11 biosynthesis
TON_1509	PWY-5892	menaquinol-12 biosynthesis
TON_1509	PWY-5895	menaquinol-13 biosynthesis
TON_1513	PWY-5686	UMP biosynthesis
TON_1516	PWY-6654	phosphopantothenate biosynthesis III
TON_1520	PWY-6823	molybdenum cofactor biosynthesis
TON_1529	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TON_1529	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TON_1529	PWY-6268	adenosylcobalamin salvage from cobalamin
TON_1529	PWY-6269	adenosylcobalamin salvage from cobinamide II
TON_1531	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_1532	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TON_1532	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TON_1536	PWY-7533	gliotoxin biosynthesis
TON_1563	PWY-1881	formate oxidation to CO<sub>2</sub>
TON_1563	PWY-5497	purine nucleobases degradation II (anaerobic)
TON_1563	PWY-6696	oxalate degradation III
TON_1581	PWY-5964	guanylyl molybdenum cofactor biosynthesis
TON_1608	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
TON_1612	PWY-6823	molybdenum cofactor biosynthesis
TON_1613	PWY-1042	glycolysis IV (plant cytosol)
TON_1613	PWY-1622	formaldehyde assimilation I (serine pathway)
TON_1613	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TON_1613	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_1613	PWY-5723	Rubisco shunt
TON_1613	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_1613	PWY-6886	1-butanol autotrophic biosynthesis
TON_1613	PWY-6901	superpathway of glucose and xylose degradation
TON_1613	PWY-7003	glycerol degradation to butanol
TON_1613	PWY-7124	ethylene biosynthesis V (engineered)
TON_1613	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TON_1616	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TON_1620	PWY-6823	molybdenum cofactor biosynthesis
TON_1632	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TON_1632	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TON_1632	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TON_1636	PWY-5392	reductive TCA cycle II
TON_1636	PWY-5537	pyruvate fermentation to acetate V
TON_1636	PWY-5538	pyruvate fermentation to acetate VI
TON_1636	PWY-5690	TCA cycle II (plants and fungi)
TON_1636	PWY-5913	TCA cycle VI (obligate autotrophs)
TON_1636	PWY-6728	methylaspartate cycle
TON_1636	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TON_1636	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1640	PWY-1042	glycolysis IV (plant cytosol)
TON_1640	PWY-5484	glycolysis II (from fructose 6-phosphate)
TON_1640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TON_1640	PWY-7003	glycerol degradation to butanol
TON_1659	PWY-6938	NADH repair
TON_1660	PWY-842	starch degradation I
TON_1665	PWY-5392	reductive TCA cycle II
TON_1665	PWY-5537	pyruvate fermentation to acetate V
TON_1665	PWY-5538	pyruvate fermentation to acetate VI
TON_1665	PWY-5690	TCA cycle II (plants and fungi)
TON_1665	PWY-5913	TCA cycle VI (obligate autotrophs)
TON_1665	PWY-6728	methylaspartate cycle
TON_1665	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TON_1665	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TON_1704	PWY-5340	sulfate activation for sulfonation
TON_1707	PWY-5278	sulfite oxidation III
TON_1707	PWY-5340	sulfate activation for sulfonation
TON_1707	PWY-6683	sulfate reduction III (assimilatory)
TON_1707	PWY-6932	selenate reduction
TON_1710	PWY-3581	(<i>S</i>)-reticuline biosynthesis I
TON_1710	PWY-5254	methanofuran biosynthesis
TON_1710	PWY-5474	hydroxycinnamic acid tyramine amides biosynthesis
TON_1710	PWY-6133	(S)-reticuline biosynthesis II
TON_1710	PWY-6802	salidroside biosynthesis
TON_1710	PWY-7297	octopamine biosynthesis
TON_1715	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
TON_1732	PWY-5663	tetrahydrobiopterin biosynthesis I
TON_1732	PWY-5664	tetrahydrobiopterin biosynthesis II
TON_1732	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TON_1732	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_1732	PWY-6983	tetrahydrobiopterin biosynthesis III
TON_1732	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TON_1742	PWY-6834	spermidine biosynthesis III
TON_1752	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_1753	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TON_1758	PWY-6703	preQ<sub>0</sub> biosynthesis
TON_1763	PWY-5686	UMP biosynthesis
TON_1772	PWY-381	nitrate reduction II (assimilatory)
TON_1772	PWY-5675	nitrate reduction V (assimilatory)
TON_1772	PWY-6549	L-glutamine biosynthesis III
TON_1772	PWY-6963	ammonia assimilation cycle I
TON_1772	PWY-6964	ammonia assimilation cycle II
TON_1789	PWY-6749	CMP-legionaminate biosynthesis I
TON_1792	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
TON_1798	PWY-622	starch biosynthesis
TON_1816	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_1816	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_1816	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TON_1816	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_1816	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1816	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1816	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_1816	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TON_1843	PWY-3221	dTDP-L-rhamnose biosynthesis II
TON_1843	PWY-6808	dTDP-D-forosamine biosynthesis
TON_1843	PWY-6942	dTDP-D-desosamine biosynthesis
TON_1843	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TON_1843	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TON_1843	PWY-6974	dTDP-L-olivose biosynthesis
TON_1843	PWY-6976	dTDP-L-mycarose biosynthesis
TON_1843	PWY-7104	dTDP-L-megosamine biosynthesis
TON_1843	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TON_1843	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TON_1843	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TON_1843	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TON_1843	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TON_1843	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TON_1843	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TON_1843	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TON_1856	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TON_1856	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TON_1856	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1856	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TON_1856	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TON_1856	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TON_1859	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TON_1859	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TON_1859	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TON_1859	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TON_1870	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1870	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1870	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TON_1881	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_1884	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TON_1884	PWY-6596	adenosine nucleotides degradation I
TON_1884	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TON_1885	PWY-5316	nicotine biosynthesis
TON_1885	PWY-7342	superpathway of nicotine biosynthesis
TON_1887	PWY-5316	nicotine biosynthesis
TON_1887	PWY-7342	superpathway of nicotine biosynthesis
TON_1889	PWY-5316	nicotine biosynthesis
TON_1889	PWY-5381	pyridine nucleotide cycling (plants)
TON_1889	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TON_1889	PWY-7342	superpathway of nicotine biosynthesis
TON_1890	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TON_1890	PWY-6891	thiazole biosynthesis II (Bacillus)
TON_1890	PWY-6892	thiazole biosynthesis I (E. coli)
TON_1891	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
TON_1893	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TON_1894	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TON_1905	PWY-7285	methylwyosine biosynthesis
TON_1905	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TON_1934	PWY-6482	diphthamide biosynthesis (archaea)
TON_1934	PWY-7546	diphthamide biosynthesis (eukaryotes)
TON_1950	PWY-6349	CDP-archaeol biosynthesis
TON_1960	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
