THEMA_00025	PWY-6938	NADH repair
THEMA_00080	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THEMA_00080	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THEMA_00155	PWY-6317	galactose degradation I (Leloir pathway)
THEMA_00155	PWY-6527	stachyose degradation
THEMA_00160	PWY-622	starch biosynthesis
THEMA_00180	PWY-7560	methylerythritol phosphate pathway II
THEMA_00190	PWY-7560	methylerythritol phosphate pathway II
THEMA_00195	PWY-6898	thiamin salvage III
THEMA_00195	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THEMA_00195	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THEMA_00210	PWY-1042	glycolysis IV (plant cytosol)
THEMA_00210	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THEMA_00210	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_00210	PWY-5723	Rubisco shunt
THEMA_00210	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_00210	PWY-6886	1-butanol autotrophic biosynthesis
THEMA_00210	PWY-6901	superpathway of glucose and xylose degradation
THEMA_00210	PWY-7003	glycerol degradation to butanol
THEMA_00210	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THEMA_00210	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THEMA_00220	PWY-3961	phosphopantothenate biosynthesis II
THEMA_00225	PWY-5344	L-homocysteine biosynthesis
THEMA_00225	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THEMA_00235	PWY-6339	syringate degradation
THEMA_00250	PWY-1042	glycolysis IV (plant cytosol)
THEMA_00250	PWY-1622	formaldehyde assimilation I (serine pathway)
THEMA_00250	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THEMA_00250	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_00250	PWY-5723	Rubisco shunt
THEMA_00250	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_00250	PWY-6886	1-butanol autotrophic biosynthesis
THEMA_00250	PWY-6901	superpathway of glucose and xylose degradation
THEMA_00250	PWY-7003	glycerol degradation to butanol
THEMA_00250	PWY-7124	ethylene biosynthesis V (engineered)
THEMA_00250	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THEMA_00350	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
THEMA_00350	PWY-6167	flavin biosynthesis II (archaea)
THEMA_00350	PWY-6168	flavin biosynthesis III (fungi)
THEMA_00410	PWY-6556	pyrimidine ribonucleosides salvage II
THEMA_00410	PWY-7181	pyrimidine deoxyribonucleosides degradation
THEMA_00410	PWY-7193	pyrimidine ribonucleosides salvage I
THEMA_00410	PWY-7199	pyrimidine deoxyribonucleosides salvage
THEMA_00425	PWY-5030	L-histidine degradation III
THEMA_00580	PWY-6906	chitin derivatives degradation
THEMA_00580	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
THEMA_00580	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
THEMA_00625	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THEMA_00625	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THEMA_00625	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THEMA_00635	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
THEMA_00635	PWY-7177	UTP and CTP dephosphorylation II
THEMA_00635	PWY-7185	UTP and CTP dephosphorylation I
THEMA_00645	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THEMA_00645	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THEMA_00645	PWY-5989	stearate biosynthesis II (bacteria and plants)
THEMA_00645	PWY-5994	palmitate biosynthesis I (animals and fungi)
THEMA_00645	PWY-6113	superpathway of mycolate biosynthesis
THEMA_00645	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THEMA_00645	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THEMA_00645	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THEMA_00645	PWYG-321	mycolate biosynthesis
THEMA_00650	PWY-723	alkylnitronates degradation
THEMA_00660	PWY-4381	fatty acid biosynthesis initiation I
THEMA_00660	PWY-6799	fatty acid biosynthesis (plant mitochondria)
THEMA_00660	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THEMA_00695	PWY-6700	queuosine biosynthesis
THEMA_00700	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
THEMA_00700	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
THEMA_00700	PWY-6897	thiamin salvage II
THEMA_00700	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
THEMA_00700	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
THEMA_00700	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
THEMA_00700	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
THEMA_00710	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
THEMA_00715	PWY-5532	adenosine nucleotides degradation IV
THEMA_00805	PWY-6749	CMP-legionaminate biosynthesis I
THEMA_00885	PWY-5839	menaquinol-7 biosynthesis
THEMA_00885	PWY-5844	menaquinol-9 biosynthesis
THEMA_00885	PWY-5849	menaquinol-6 biosynthesis
THEMA_00885	PWY-5890	menaquinol-10 biosynthesis
THEMA_00885	PWY-5891	menaquinol-11 biosynthesis
THEMA_00885	PWY-5892	menaquinol-12 biosynthesis
THEMA_00885	PWY-5895	menaquinol-13 biosynthesis
THEMA_00915	PWY-6829	tRNA methylation (yeast)
THEMA_00975	PWY-3861	mannitol degradation II
THEMA_00975	PWY-3881	mannitol biosynthesis
THEMA_00975	PWY-5659	GDP-mannose biosynthesis
THEMA_00975	PWY-7456	mannan degradation
THEMA_00975	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
THEMA_01055	PWY-7183	pyrimidine nucleobases salvage I
THEMA_01060	PWY-1622	formaldehyde assimilation I (serine pathway)
THEMA_01060	PWY-181	photorespiration
THEMA_01060	PWY-2161	folate polyglutamylation
THEMA_01060	PWY-2201	folate transformations I
THEMA_01060	PWY-3661	glycine betaine degradation I
THEMA_01060	PWY-3661-1	glycine betaine degradation II (mammalian)
THEMA_01060	PWY-3841	folate transformations II
THEMA_01060	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_01080	PWY-6339	syringate degradation
THEMA_01085	PWY-4381	fatty acid biosynthesis initiation I
THEMA_01085	PWY-5743	3-hydroxypropanoate cycle
THEMA_01085	PWY-5744	glyoxylate assimilation
THEMA_01085	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
THEMA_01085	PWY-6679	jadomycin biosynthesis
THEMA_01085	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THEMA_01125	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THEMA_01125	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
THEMA_01205	PWY-6012	acyl carrier protein metabolism I
THEMA_01205	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
THEMA_01220	PWY-1042	glycolysis IV (plant cytosol)
THEMA_01220	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_01220	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_01220	PWY-6886	1-butanol autotrophic biosynthesis
THEMA_01220	PWY-6901	superpathway of glucose and xylose degradation
THEMA_01220	PWY-7003	glycerol degradation to butanol
THEMA_01225	PWY-1042	glycolysis IV (plant cytosol)
THEMA_01225	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_01225	PWY-6901	superpathway of glucose and xylose degradation
THEMA_01225	PWY-7003	glycerol degradation to butanol
THEMA_01335	PWY-6936	seleno-amino acid biosynthesis
THEMA_01335	PWY-7274	D-cycloserine biosynthesis
THEMA_01340	PWY-6936	seleno-amino acid biosynthesis
THEMA_01390	PWY-6834	spermidine biosynthesis III
THEMA_01430	PWY-7560	methylerythritol phosphate pathway II
THEMA_01615	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
THEMA_01730	PWY-1281	sulfoacetaldehyde degradation I
THEMA_01730	PWY-5482	pyruvate fermentation to acetate II
THEMA_01730	PWY-5485	pyruvate fermentation to acetate IV
THEMA_01730	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_01730	PWY-6637	sulfolactate degradation II
THEMA_01780	PWY-3341	L-proline biosynthesis III
THEMA_01780	PWY-4981	L-proline biosynthesis II (from arginine)
THEMA_01780	PWY-6344	L-ornithine degradation II (Stickland reaction)
THEMA_01800	PWY-6700	queuosine biosynthesis
THEMA_01885	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_01885	PWY-5686	UMP biosynthesis
THEMA_01885	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_01890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_01890	PWY-5686	UMP biosynthesis
THEMA_01890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_01895	PWY-7396	butanol and isobutanol biosynthesis (engineered)
THEMA_01910	PWY-6871	3-methylbutanol biosynthesis
THEMA_01915	PWY-5101	L-isoleucine biosynthesis II
THEMA_01915	PWY-6871	3-methylbutanol biosynthesis
THEMA_01920	PWY-5101	L-isoleucine biosynthesis II
THEMA_01920	PWY-5103	L-isoleucine biosynthesis III
THEMA_01920	PWY-5104	L-isoleucine biosynthesis IV
THEMA_01920	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THEMA_01925	PWY-5101	L-isoleucine biosynthesis II
THEMA_01925	PWY-5103	L-isoleucine biosynthesis III
THEMA_01925	PWY-5104	L-isoleucine biosynthesis IV
THEMA_01925	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THEMA_01930	PWY-5101	L-isoleucine biosynthesis II
THEMA_01930	PWY-5103	L-isoleucine biosynthesis III
THEMA_01930	PWY-5104	L-isoleucine biosynthesis IV
THEMA_01930	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THEMA_01930	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THEMA_01930	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THEMA_01930	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THEMA_01935	PWY-5101	L-isoleucine biosynthesis II
THEMA_01935	PWY-5103	L-isoleucine biosynthesis III
THEMA_01935	PWY-5104	L-isoleucine biosynthesis IV
THEMA_01935	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
THEMA_01935	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
THEMA_01935	PWY-6389	(<i>S</i>)-acetoin biosynthesis
THEMA_01935	PWY-7111	pyruvate fermentation to isobutanol (engineered)
THEMA_01940	PWY-2941	L-lysine biosynthesis II
THEMA_01940	PWY-2942	L-lysine biosynthesis III
THEMA_01940	PWY-5097	L-lysine biosynthesis VI
THEMA_01940	PWY-6559	spermidine biosynthesis II
THEMA_01940	PWY-6562	norspermidine biosynthesis
THEMA_01940	PWY-7153	grixazone biosynthesis
THEMA_01950	PWY-702	L-methionine biosynthesis II
THEMA_02050	PWY-2781	<i>cis</i>-zeatin biosynthesis
THEMA_02320	PWY-5381	pyridine nucleotide cycling (plants)
THEMA_02480	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THEMA_02495	PWY-6123	inosine-5'-phosphate biosynthesis I
THEMA_02495	PWY-7234	inosine-5'-phosphate biosynthesis III
THEMA_02510	PWY-4261	glycerol degradation I
THEMA_02610	PWY-6349	CDP-archaeol biosynthesis
THEMA_02660	PWY-6167	flavin biosynthesis II (archaea)
THEMA_02690	PWY-7039	phosphatidate metabolism, as a signaling molecule
THEMA_02705	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THEMA_02720	PWY-7199	pyrimidine deoxyribonucleosides salvage
THEMA_02815	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
THEMA_02815	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
THEMA_02830	PWY-5667	CDP-diacylglycerol biosynthesis I
THEMA_02830	PWY-5981	CDP-diacylglycerol biosynthesis III
THEMA_02840	PWY-5437	L-threonine degradation I
THEMA_02840	PWY-7013	L-1,2-propanediol degradation
THEMA_02895	PWY-5941	glycogen degradation II (eukaryotic)
THEMA_02895	PWY-6724	starch degradation II
THEMA_02895	PWY-6737	starch degradation V
THEMA_02895	PWY-7238	sucrose biosynthesis II
THEMA_02895	PWY-842	starch degradation I
THEMA_02970	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THEMA_02970	PWY-6416	quinate degradation II
THEMA_02970	PWY-6707	gallate biosynthesis
THEMA_02975	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THEMA_02980	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THEMA_02985	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THEMA_02990	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
THEMA_02995	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
THEMA_03000	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
THEMA_03000	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
THEMA_03000	PWY-6164	3-dehydroquinate biosynthesis I
THEMA_03045	PWY-5686	UMP biosynthesis
THEMA_03060	PWY-5686	UMP biosynthesis
THEMA_03065	PWY-5686	UMP biosynthesis
THEMA_03175	PWY-6807	xyloglucan degradation II (exoglucanase)
THEMA_03250	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THEMA_03250	PWY-5723	Rubisco shunt
THEMA_03280	PWY-1042	glycolysis IV (plant cytosol)
THEMA_03280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THEMA_03280	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_03280	PWY-6531	mannitol cycle
THEMA_03280	PWY-7385	1,3-propanediol biosynthesis (engineered)
THEMA_03305	PWY-4261	glycerol degradation I
THEMA_03315	PWY-2723	trehalose degradation V
THEMA_03315	PWY-6317	galactose degradation I (Leloir pathway)
THEMA_03315	PWY-6737	starch degradation V
THEMA_03355	PWY-5482	pyruvate fermentation to acetate II
THEMA_03355	PWY-5485	pyruvate fermentation to acetate IV
THEMA_03355	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_03360	PWY-1042	glycolysis IV (plant cytosol)
THEMA_03360	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THEMA_03360	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_03360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_03360	PWY-7385	1,3-propanediol biosynthesis (engineered)
THEMA_03365	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
THEMA_03365	PWY-6549	L-glutamine biosynthesis III
THEMA_03365	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THEMA_03365	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
THEMA_03375	PWY-2201	folate transformations I
THEMA_03375	PWY-3841	folate transformations II
THEMA_03380	PWY-2201	folate transformations I
THEMA_03380	PWY-3841	folate transformations II
THEMA_03430	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_03430	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_03525	PWY-622	starch biosynthesis
THEMA_03530	PWY-622	starch biosynthesis
THEMA_03545	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_03545	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_03550	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THEMA_03550	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THEMA_03550	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THEMA_03555	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_03555	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_03565	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THEMA_03565	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
THEMA_03565	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THEMA_03565	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THEMA_03570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_03570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_03605	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
THEMA_03605	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
THEMA_03635	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_03680	PWY-1042	glycolysis IV (plant cytosol)
THEMA_03680	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THEMA_03680	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_03680	PWY-7385	1,3-propanediol biosynthesis (engineered)
THEMA_03685	PWY-1042	glycolysis IV (plant cytosol)
THEMA_03685	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THEMA_03685	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_03685	PWY-5723	Rubisco shunt
THEMA_03685	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_03685	PWY-6886	1-butanol autotrophic biosynthesis
THEMA_03685	PWY-6901	superpathway of glucose and xylose degradation
THEMA_03685	PWY-7003	glycerol degradation to butanol
THEMA_03685	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THEMA_03685	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THEMA_03695	PWY-6599	guanine and guanosine salvage II
THEMA_03695	PWY-6609	adenine and adenosine salvage III
THEMA_03695	PWY-6610	adenine and adenosine salvage IV
THEMA_03695	PWY-6620	guanine and guanosine salvage
THEMA_03855	PWY-6749	CMP-legionaminate biosynthesis I
THEMA_03865	PWY-6823	molybdenum cofactor biosynthesis
THEMA_03940	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THEMA_03965	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
THEMA_03970	PWY-2161	folate polyglutamylation
THEMA_04005	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
THEMA_04025	PWY-5491	diethylphosphate degradation
THEMA_04030	PWY-3461	L-tyrosine biosynthesis II
THEMA_04030	PWY-3462	L-phenylalanine biosynthesis II
THEMA_04030	PWY-6120	L-tyrosine biosynthesis III
THEMA_04030	PWY-6627	salinosporamide A biosynthesis
THEMA_04030	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
THEMA_04060	PWY-6749	CMP-legionaminate biosynthesis I
THEMA_04095	PWY-5958	acridone alkaloid biosynthesis
THEMA_04095	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THEMA_04095	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THEMA_04100	PWY-5958	acridone alkaloid biosynthesis
THEMA_04100	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
THEMA_04100	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
THEMA_04215	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THEMA_04215	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THEMA_04215	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THEMA_04215	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THEMA_04215	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THEMA_04215	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
THEMA_04215	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
THEMA_04215	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
THEMA_04225	PWY-4261	glycerol degradation I
THEMA_04265	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_04265	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_04320	PWY-5381	pyridine nucleotide cycling (plants)
THEMA_04320	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THEMA_04455	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THEMA_04460	PWY-7242	D-fructuronate degradation
THEMA_04475	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THEMA_04475	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
THEMA_04475	PWY-7242	D-fructuronate degradation
THEMA_04475	PWY-7310	D-glucosaminate degradation
THEMA_04485	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
THEMA_04485	PWY-7248	pectin degradation III
THEMA_04500	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THEMA_04595	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THEMA_04595	PWY-6148	tetrahydromethanopterin biosynthesis
THEMA_04595	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
THEMA_04595	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THEMA_04600	PWY-6614	tetrahydrofolate biosynthesis
THEMA_04605	PWY-5663	tetrahydrobiopterin biosynthesis I
THEMA_04605	PWY-5664	tetrahydrobiopterin biosynthesis II
THEMA_04605	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
THEMA_04605	PWY-6703	preQ<sub>0</sub> biosynthesis
THEMA_04605	PWY-6983	tetrahydrobiopterin biosynthesis III
THEMA_04605	PWY-7442	drosopterin and aurodrosopterin biosynthesis
THEMA_04620	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THEMA_04620	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THEMA_04620	PWY-7185	UTP and CTP dephosphorylation I
THEMA_04620	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THEMA_04620	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THEMA_04760	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
THEMA_04760	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
THEMA_04795	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THEMA_04835	PWY-1622	formaldehyde assimilation I (serine pathway)
THEMA_04835	PWY-5392	reductive TCA cycle II
THEMA_04835	PWY-5481	pyruvate fermentation to lactate
THEMA_04835	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
THEMA_04835	PWY-5690	TCA cycle II (plants and fungi)
THEMA_04835	PWY-5913	TCA cycle VI (obligate autotrophs)
THEMA_04835	PWY-6728	methylaspartate cycle
THEMA_04835	PWY-6901	superpathway of glucose and xylose degradation
THEMA_04835	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THEMA_04835	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
THEMA_04835	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THEMA_04865	PWY-5269	cardiolipin biosynthesis II
THEMA_04865	PWY-5668	cardiolipin biosynthesis I
THEMA_04935	PWY-3121	linamarin degradation
THEMA_04935	PWY-5176	coumarin biosynthesis (via 2-coumarate)
THEMA_04935	PWY-6002	lotaustralin degradation
THEMA_04935	PWY-6788	cellulose degradation II (fungi)
THEMA_04935	PWY-7089	taxiphyllin bioactivation
THEMA_04935	PWY-7091	linustatin bioactivation
THEMA_04935	PWY-7092	neolinustatin bioactivation
THEMA_04980	PWY-842	starch degradation I
THEMA_05000	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THEMA_05005	PWY-842	starch degradation I
THEMA_05060	PWY-6167	flavin biosynthesis II (archaea)
THEMA_05060	PWY-6168	flavin biosynthesis III (fungi)
THEMA_05060	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_05065	PWY-6167	flavin biosynthesis II (archaea)
THEMA_05065	PWY-6168	flavin biosynthesis III (fungi)
THEMA_05065	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
THEMA_05070	PWY-6167	flavin biosynthesis II (archaea)
THEMA_05070	PWY-6168	flavin biosynthesis III (fungi)
THEMA_05095	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_05280	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_05280	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_05285	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_05290	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_05290	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_05295	PWY-4983	L-citrulline-nitric oxide cycle
THEMA_05295	PWY-4984	urea cycle
THEMA_05295	PWY-5	canavanine biosynthesis
THEMA_05295	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_05295	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_05300	PWY-4983	L-citrulline-nitric oxide cycle
THEMA_05300	PWY-4984	urea cycle
THEMA_05300	PWY-5	canavanine biosynthesis
THEMA_05300	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_05300	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_05355	PWY-1042	glycolysis IV (plant cytosol)
THEMA_05355	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
THEMA_05355	PWY-5484	glycolysis II (from fructose 6-phosphate)
THEMA_05355	PWY-5723	Rubisco shunt
THEMA_05355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_05355	PWY-6886	1-butanol autotrophic biosynthesis
THEMA_05355	PWY-6901	superpathway of glucose and xylose degradation
THEMA_05355	PWY-7003	glycerol degradation to butanol
THEMA_05355	PWY-7124	ethylene biosynthesis V (engineered)
THEMA_05355	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
THEMA_05375	PWY-6891	thiazole biosynthesis II (Bacillus)
THEMA_05375	PWY-6892	thiazole biosynthesis I (E. coli)
THEMA_05375	PWY-7560	methylerythritol phosphate pathway II
THEMA_05390	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
THEMA_05390	PWY-2201	folate transformations I
THEMA_05390	PWY-3841	folate transformations II
THEMA_05390	PWY-5030	L-histidine degradation III
THEMA_05390	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_05390	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THEMA_05395	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
THEMA_05395	PWY-2161	folate polyglutamylation
THEMA_05395	PWY-2201	folate transformations I
THEMA_05395	PWY-3841	folate transformations II
THEMA_05415	PWY-6891	thiazole biosynthesis II (Bacillus)
THEMA_05415	PWY-6892	thiazole biosynthesis I (E. coli)
THEMA_05415	PWY-7560	methylerythritol phosphate pathway II
THEMA_05455	PWY-5482	pyruvate fermentation to acetate II
THEMA_05455	PWY-5485	pyruvate fermentation to acetate IV
THEMA_05455	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_05460	PWY-1281	sulfoacetaldehyde degradation I
THEMA_05460	PWY-5482	pyruvate fermentation to acetate II
THEMA_05460	PWY-5485	pyruvate fermentation to acetate IV
THEMA_05460	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_05460	PWY-6637	sulfolactate degradation II
THEMA_05465	PWY-5482	pyruvate fermentation to acetate II
THEMA_05465	PWY-5485	pyruvate fermentation to acetate IV
THEMA_05465	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_05550	PWY-4202	arsenate detoxification I (glutaredoxin)
THEMA_05550	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THEMA_05550	PWY-6608	guanosine nucleotides degradation III
THEMA_05550	PWY-6609	adenine and adenosine salvage III
THEMA_05550	PWY-6611	adenine and adenosine salvage V
THEMA_05550	PWY-6620	guanine and guanosine salvage
THEMA_05550	PWY-6627	salinosporamide A biosynthesis
THEMA_05550	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
THEMA_05550	PWY-7179	purine deoxyribonucleosides degradation I
THEMA_05550	PWY-7179-1	purine deoxyribonucleosides degradation
THEMA_05570	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
THEMA_05570	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THEMA_05570	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
THEMA_05580	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THEMA_05595	PWY-6654	phosphopantothenate biosynthesis III
THEMA_05620	PWY-5367	petroselinate biosynthesis
THEMA_05620	PWY-5971	palmitate biosynthesis II (bacteria and plants)
THEMA_05620	PWY-5973	<i>cis</i>-vaccenate biosynthesis
THEMA_05620	PWY-5989	stearate biosynthesis II (bacteria and plants)
THEMA_05620	PWY-5994	palmitate biosynthesis I (animals and fungi)
THEMA_05620	PWY-6113	superpathway of mycolate biosynthesis
THEMA_05620	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
THEMA_05620	PWY-6519	8-amino-7-oxononanoate biosynthesis I
THEMA_05620	PWY-6951	THEMA_05620|THEMA_05620|REF_PRJNA63051:THEMA_05620|GeneID:18092974
THEMA_05620	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
THEMA_05620	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
THEMA_05620	PWYG-321	mycolate biosynthesis
THEMA_05650	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
THEMA_05650	PWY-5723	Rubisco shunt
THEMA_05670	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
THEMA_05670	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
THEMA_05775	PWY-5667	CDP-diacylglycerol biosynthesis I
THEMA_05775	PWY-5981	CDP-diacylglycerol biosynthesis III
THEMA_05775	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
THEMA_05775	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
THEMA_05780	PWY-6823	molybdenum cofactor biosynthesis
THEMA_05780	PWY-6891	thiazole biosynthesis II (Bacillus)
THEMA_05780	PWY-6892	thiazole biosynthesis I (E. coli)
THEMA_05780	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THEMA_05795	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_05935	PWY-5381	pyridine nucleotide cycling (plants)
THEMA_05935	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THEMA_05935	PWY-6596	adenosine nucleotides degradation I
THEMA_05935	PWY-6606	guanosine nucleotides degradation II
THEMA_05935	PWY-6607	guanosine nucleotides degradation I
THEMA_05935	PWY-6608	guanosine nucleotides degradation III
THEMA_05935	PWY-7185	UTP and CTP dephosphorylation I
THEMA_05955	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THEMA_05955	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
THEMA_05980	PWY-7181	pyrimidine deoxyribonucleosides degradation
THEMA_06020	PWY-5316	nicotine biosynthesis
THEMA_06020	PWY-5381	pyridine nucleotide cycling (plants)
THEMA_06020	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THEMA_06020	PWY-7342	superpathway of nicotine biosynthesis
THEMA_06025	PWY-5316	nicotine biosynthesis
THEMA_06025	PWY-7342	superpathway of nicotine biosynthesis
THEMA_06035	PWY-5686	UMP biosynthesis
THEMA_06040	PWY-3841	folate transformations II
THEMA_06040	PWY-6614	tetrahydrofolate biosynthesis
THEMA_06045	PWY-101	photosynthesis light reactions
THEMA_06045	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
THEMA_06100	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THEMA_06125	PWY-6807	xyloglucan degradation II (exoglucanase)
THEMA_06190	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_06200	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_06265	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
THEMA_06270	PWY-4202	arsenate detoxification I (glutaredoxin)
THEMA_06270	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THEMA_06270	PWY-6608	guanosine nucleotides degradation III
THEMA_06270	PWY-6609	adenine and adenosine salvage III
THEMA_06270	PWY-6611	adenine and adenosine salvage V
THEMA_06270	PWY-6620	guanine and guanosine salvage
THEMA_06270	PWY-6627	salinosporamide A biosynthesis
THEMA_06270	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
THEMA_06270	PWY-7179	purine deoxyribonucleosides degradation I
THEMA_06270	PWY-7179-1	purine deoxyribonucleosides degradation
THEMA_06365	PWY-6123	inosine-5'-phosphate biosynthesis I
THEMA_06365	PWY-6124	inosine-5'-phosphate biosynthesis II
THEMA_06365	PWY-7234	inosine-5'-phosphate biosynthesis III
THEMA_06435	PWY-6829	tRNA methylation (yeast)
THEMA_06435	PWY-7285	methylwyosine biosynthesis
THEMA_06435	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
THEMA_06475	PWY-6700	queuosine biosynthesis
THEMA_06480	PWY-5030	L-histidine degradation III
THEMA_06480	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_06485	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
THEMA_06535	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
THEMA_06535	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
THEMA_06535	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
THEMA_06650	PWY-5839	menaquinol-7 biosynthesis
THEMA_06650	PWY-5851	demethylmenaquinol-9 biosynthesis
THEMA_06650	PWY-5852	demethylmenaquinol-8 biosynthesis I
THEMA_06650	PWY-5853	demethylmenaquinol-6 biosynthesis I
THEMA_06650	PWY-5890	menaquinol-10 biosynthesis
THEMA_06650	PWY-5891	menaquinol-11 biosynthesis
THEMA_06650	PWY-5892	menaquinol-12 biosynthesis
THEMA_06650	PWY-5895	menaquinol-13 biosynthesis
THEMA_06665	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THEMA_06670	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
THEMA_06685	PWY-2941	L-lysine biosynthesis II
THEMA_06685	PWY-2942	L-lysine biosynthesis III
THEMA_06685	PWY-5097	L-lysine biosynthesis VI
THEMA_06685	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
THEMA_06685	PWY-6559	spermidine biosynthesis II
THEMA_06685	PWY-6562	norspermidine biosynthesis
THEMA_06685	PWY-7153	grixazone biosynthesis
THEMA_06685	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_06690	PWY-2941	L-lysine biosynthesis II
THEMA_06690	PWY-5097	L-lysine biosynthesis VI
THEMA_06695	PWY-2941	L-lysine biosynthesis II
THEMA_06695	PWY-2942	L-lysine biosynthesis III
THEMA_06695	PWY-5097	L-lysine biosynthesis VI
THEMA_06700	PWY-2941	L-lysine biosynthesis II
THEMA_06700	PWY-2942	L-lysine biosynthesis III
THEMA_06700	PWY-5097	L-lysine biosynthesis VI
THEMA_06705	PWY-2941	L-lysine biosynthesis II
THEMA_06710	PWY-2941	L-lysine biosynthesis II
THEMA_06710	PWY-2942	L-lysine biosynthesis III
THEMA_06710	PWY-5097	L-lysine biosynthesis VI
THEMA_06710	PWY-6559	spermidine biosynthesis II
THEMA_06710	PWY-6562	norspermidine biosynthesis
THEMA_06710	PWY-7153	grixazone biosynthesis
THEMA_06715	PWY-2941	L-lysine biosynthesis II
THEMA_06715	PWY-2942	L-lysine biosynthesis III
THEMA_06715	PWY-5097	L-lysine biosynthesis VI
THEMA_06905	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_06950	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_06955	PWY-2723	trehalose degradation V
THEMA_06955	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THEMA_06955	PWY-5661	GDP-glucose biosynthesis
THEMA_06955	PWY-7238	sucrose biosynthesis II
THEMA_06955	PWY-7385	1,3-propanediol biosynthesis (engineered)
THEMA_06985	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
THEMA_06985	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
THEMA_06985	PWY-6268	adenosylcobalamin salvage from cobalamin
THEMA_06985	PWY-6269	adenosylcobalamin salvage from cobinamide II
THEMA_06990	PWY-6019	pseudouridine degradation
THEMA_07095	PWY-7560	methylerythritol phosphate pathway II
THEMA_07100	PWY-7205	CMP phosphorylation
THEMA_07115	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
THEMA_07115	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
THEMA_07125	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
THEMA_07125	PWY-622	starch biosynthesis
THEMA_07215	PWY-2301	<i>myo</i>-inositol biosynthesis
THEMA_07215	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
THEMA_07215	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
THEMA_07215	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
THEMA_07215	PWY-6664	di-myo-inositol phosphate biosynthesis
THEMA_07250	PWY-621	sucrose degradation III (sucrose invertase)
THEMA_07315	PWY-6832	2-aminoethylphosphonate degradation II
THEMA_07350	PWY-7560	methylerythritol phosphate pathway II
THEMA_07400	PWY-3801	sucrose degradation II (sucrose synthase)
THEMA_07400	PWY-5054	sorbitol biosynthesis I
THEMA_07400	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
THEMA_07400	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THEMA_07400	PWY-5659	GDP-mannose biosynthesis
THEMA_07400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
THEMA_07400	PWY-621	sucrose degradation III (sucrose invertase)
THEMA_07400	PWY-622	starch biosynthesis
THEMA_07400	PWY-6531	mannitol cycle
THEMA_07400	PWY-6981	chitin biosynthesis
THEMA_07400	PWY-7238	sucrose biosynthesis II
THEMA_07400	PWY-7347	sucrose biosynthesis III
THEMA_07400	PWY-7385	1,3-propanediol biosynthesis (engineered)
THEMA_07405	PWY-6605	adenine and adenosine salvage II
THEMA_07405	PWY-6610	adenine and adenosine salvage IV
THEMA_07410	PWY-7560	methylerythritol phosphate pathway II
THEMA_07430	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
THEMA_07480	PWY-6823	molybdenum cofactor biosynthesis
THEMA_07480	PWY-6891	thiazole biosynthesis II (Bacillus)
THEMA_07480	PWY-6892	thiazole biosynthesis I (E. coli)
THEMA_07480	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
THEMA_07565	PWY-1281	sulfoacetaldehyde degradation I
THEMA_07565	PWY-5482	pyruvate fermentation to acetate II
THEMA_07565	PWY-5485	pyruvate fermentation to acetate IV
THEMA_07565	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_07565	PWY-6637	sulfolactate degradation II
THEMA_07575	PWY-1281	sulfoacetaldehyde degradation I
THEMA_07575	PWY-5482	pyruvate fermentation to acetate II
THEMA_07575	PWY-5485	pyruvate fermentation to acetate IV
THEMA_07575	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_07575	PWY-6637	sulfolactate degradation II
THEMA_07585	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
THEMA_07605	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
THEMA_07605	PWY-6596	adenosine nucleotides degradation I
THEMA_07605	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_07720	PWY-6823	molybdenum cofactor biosynthesis
THEMA_07835	PWY-6823	molybdenum cofactor biosynthesis
THEMA_07905	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
THEMA_07905	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
THEMA_07905	PWY-6936	seleno-amino acid biosynthesis
THEMA_07905	PWY-702	L-methionine biosynthesis II
THEMA_07975	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
THEMA_07990	PWY-5198	factor 420 biosynthesis
THEMA_07990	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THEMA_08000	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
THEMA_08070	PWY-5381	pyridine nucleotide cycling (plants)
THEMA_08070	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
THEMA_08080	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08080	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08080	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08085	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08085	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08085	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08090	PWY-6123	inosine-5'-phosphate biosynthesis I
THEMA_08090	PWY-6124	inosine-5'-phosphate biosynthesis II
THEMA_08090	PWY-7234	inosine-5'-phosphate biosynthesis III
THEMA_08095	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08095	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
THEMA_08100	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08100	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08100	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08100	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
THEMA_08105	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08105	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08105	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08110	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08110	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08110	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08115	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
THEMA_08115	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
THEMA_08115	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
THEMA_08120	PWY-6123	inosine-5'-phosphate biosynthesis I
THEMA_08120	PWY-6124	inosine-5'-phosphate biosynthesis II
THEMA_08120	PWY-7234	inosine-5'-phosphate biosynthesis III
THEMA_08355	PWY-6807	xyloglucan degradation II (exoglucanase)
THEMA_08365	PWY-6807	xyloglucan degradation II (exoglucanase)
THEMA_08370	PWY-6527	stachyose degradation
THEMA_08375	PWY-6317	galactose degradation I (Leloir pathway)
THEMA_08375	PWY-6527	stachyose degradation
THEMA_08380	PWY-3821	galactose degradation III
THEMA_08380	PWY-6317	galactose degradation I (Leloir pathway)
THEMA_08380	PWY-6527	stachyose degradation
THEMA_08495	PWY-5941	glycogen degradation II (eukaryotic)
THEMA_08495	PWY-622	starch biosynthesis
THEMA_08495	PWY-6731	starch degradation III
THEMA_08495	PWY-6737	starch degradation V
THEMA_08495	PWY-7238	sucrose biosynthesis II
THEMA_08565	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THEMA_08570	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
THEMA_08570	PWY-6855	chitin degradation I (archaea)
THEMA_08570	PWY-6906	chitin derivatives degradation
THEMA_08600	PWY-5913	TCA cycle VI (obligate autotrophs)
THEMA_08600	PWY-6549	L-glutamine biosynthesis III
THEMA_08600	PWY-6728	methylaspartate cycle
THEMA_08600	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
THEMA_08600	PWY-7124	ethylene biosynthesis V (engineered)
THEMA_08600	PWY-7254	TCA cycle VII (acetate-producers)
THEMA_08600	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
THEMA_08695	PWY-1281	sulfoacetaldehyde degradation I
THEMA_08695	PWY-5482	pyruvate fermentation to acetate II
THEMA_08695	PWY-5485	pyruvate fermentation to acetate IV
THEMA_08695	PWY-5497	purine nucleobases degradation II (anaerobic)
THEMA_08695	PWY-6637	sulfolactate degradation II
THEMA_08700	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
THEMA_08700	PWY-6153	autoinducer AI-2 biosynthesis I
THEMA_08700	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
THEMA_08785	PWY-5692	allantoin degradation to glyoxylate II
THEMA_08785	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
THEMA_08850	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
THEMA_08850	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
THEMA_08850	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
THEMA_08850	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
THEMA_08850	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
THEMA_08850	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
THEMA_08860	PWY-4981	L-proline biosynthesis II (from arginine)
THEMA_08860	PWY-4984	urea cycle
THEMA_08860	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
THEMA_08865	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_08870	PWY-6123	inosine-5'-phosphate biosynthesis I
THEMA_08870	PWY-6124	inosine-5'-phosphate biosynthesis II
THEMA_08870	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
THEMA_08870	PWY-7234	inosine-5'-phosphate biosynthesis III
THEMA_09050	PWY-6807	xyloglucan degradation II (exoglucanase)
THEMA_09190	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
THEMA_09460	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
THEMA_09575	PWY-6891	thiazole biosynthesis II (Bacillus)
THEMA_09575	PWY-6892	thiazole biosynthesis I (E. coli)
THEMA_09575	PWY-7560	methylerythritol phosphate pathway II
THEMA_09585	PWY-4261	glycerol degradation I
THEMA_09630	PWY-381	nitrate reduction II (assimilatory)
THEMA_09630	PWY-5675	nitrate reduction V (assimilatory)
THEMA_09630	PWY-6549	L-glutamine biosynthesis III
THEMA_09630	PWY-6963	ammonia assimilation cycle I
THEMA_09630	PWY-6964	ammonia assimilation cycle II
THEMA_09655	PWY-5155	&beta;-alanine biosynthesis III
