Thimo_0057 PWY-5839 menaquinol-7 biosynthesis Thimo_0057 PWY-5844 menaquinol-9 biosynthesis Thimo_0057 PWY-5849 menaquinol-6 biosynthesis Thimo_0057 PWY-5890 menaquinol-10 biosynthesis Thimo_0057 PWY-5891 menaquinol-11 biosynthesis Thimo_0057 PWY-5892 menaquinol-12 biosynthesis Thimo_0057 PWY-5895 menaquinol-13 biosynthesis Thimo_0069 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_0070 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Thimo_0070 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Thimo_0070 PWY-6897 thiamin salvage II Thimo_0070 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Thimo_0070 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Thimo_0070 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Thimo_0070 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Thimo_0075 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_0075 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_0088 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_0089 PWY-6164 3-dehydroquinate biosynthesis I Thimo_0103 PWY-5941 glycogen degradation II (eukaryotic) Thimo_0103 PWY-622 starch biosynthesis Thimo_0103 PWY-6731 starch degradation III Thimo_0103 PWY-6737 starch degradation V Thimo_0103 PWY-7238 sucrose biosynthesis II Thimo_0106 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Thimo_0106 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Thimo_0120 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_0120 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_0120 PWY-6164 3-dehydroquinate biosynthesis I Thimo_0133 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_0133 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Thimo_0134 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_0143 PWY-6683 sulfate reduction III (assimilatory) Thimo_0144 PWY-6683 sulfate reduction III (assimilatory) Thimo_0181 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_0181 PWY-6416 quinate degradation II Thimo_0181 PWY-6707 gallate biosynthesis Thimo_0187 PWY-6123 inosine-5'-phosphate biosynthesis I Thimo_0187 PWY-6124 inosine-5'-phosphate biosynthesis II Thimo_0187 PWY-7234 inosine-5'-phosphate biosynthesis III Thimo_0189 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Thimo_0189 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Thimo_0189 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Thimo_0195 PWY-43 putrescine biosynthesis II Thimo_0208 PWY-5269 cardiolipin biosynthesis II Thimo_0208 PWY-5668 cardiolipin biosynthesis I Thimo_0209 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Thimo_0209 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Thimo_0209 PWY-6896 thiamin salvage I Thimo_0209 PWY-6897 thiamin salvage II Thimo_0211 PWY-6167 flavin biosynthesis II (archaea) Thimo_0211 PWY-6168 flavin biosynthesis III (fungi) Thimo_0212 PWY-6167 flavin biosynthesis II (archaea) Thimo_0212 PWY-6168 flavin biosynthesis III (fungi) Thimo_0212 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Thimo_0213 PWY-6167 flavin biosynthesis II (archaea) Thimo_0213 PWY-6168 flavin biosynthesis III (fungi) Thimo_0213 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_0223 PWY-5372 carbon tetrachloride degradation II Thimo_0223 PWY-6780 hydrogen production VI Thimo_0235 PWY-5392 reductive TCA cycle II Thimo_0235 PWY-5537 pyruvate fermentation to acetate V Thimo_0235 PWY-5538 pyruvate fermentation to acetate VI Thimo_0235 PWY-5690 TCA cycle II (plants and fungi) Thimo_0235 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0235 PWY-6728 methylaspartate cycle Thimo_0235 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0235 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_0236 PWY-5392 reductive TCA cycle II Thimo_0236 PWY-5537 pyruvate fermentation to acetate V Thimo_0236 PWY-5538 pyruvate fermentation to acetate VI Thimo_0236 PWY-5690 TCA cycle II (plants and fungi) Thimo_0236 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0236 PWY-6728 methylaspartate cycle Thimo_0236 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0236 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_0239 PWY-1622 formaldehyde assimilation I (serine pathway) Thimo_0239 PWY-5392 reductive TCA cycle II Thimo_0239 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_0239 PWY-5690 TCA cycle II (plants and fungi) Thimo_0239 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0239 PWY-6728 methylaspartate cycle Thimo_0239 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0239 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Thimo_0239 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Thimo_0241 PWY-5392 reductive TCA cycle II Thimo_0241 PWY-5537 pyruvate fermentation to acetate V Thimo_0241 PWY-5538 pyruvate fermentation to acetate VI Thimo_0241 PWY-5690 TCA cycle II (plants and fungi) Thimo_0241 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0241 PWY-6728 methylaspartate cycle Thimo_0241 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0241 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_0242 PWY-5392 reductive TCA cycle II Thimo_0242 PWY-5537 pyruvate fermentation to acetate V Thimo_0242 PWY-5538 pyruvate fermentation to acetate VI Thimo_0242 PWY-5690 TCA cycle II (plants and fungi) Thimo_0242 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0242 PWY-6728 methylaspartate cycle Thimo_0242 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0242 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_0244 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_0244 PWY-6549 L-glutamine biosynthesis III Thimo_0244 PWY-6728 methylaspartate cycle Thimo_0244 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0244 PWY-7124 ethylene biosynthesis V (engineered) Thimo_0244 PWY-7254 TCA cycle VII (acetate-producers) Thimo_0244 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_0273 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_0297 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_0297 PWY-5686 UMP biosynthesis Thimo_0297 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_0298 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_0298 PWY-5686 UMP biosynthesis Thimo_0298 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_0338 PWY-6012 acyl carrier protein metabolism I Thimo_0338 PWY-6012-1 acyl carrier protein metabolism II (mammalian) Thimo_0342 PWY-1622 formaldehyde assimilation I (serine pathway) Thimo_0342 PWY-181 photorespiration Thimo_0342 PWY-2161 folate polyglutamylation Thimo_0342 PWY-2201 folate transformations I Thimo_0342 PWY-3661 glycine betaine degradation I Thimo_0342 PWY-3661-1 glycine betaine degradation II (mammalian) Thimo_0342 PWY-3841 folate transformations II Thimo_0342 PWY-5497 purine nucleobases degradation II (anaerobic) Thimo_0346 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Thimo_0346 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_0346 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Thimo_0352 PWY-6823 molybdenum cofactor biosynthesis Thimo_0373 PWY-6902 chitin degradation II Thimo_0382 PWY-5101 L-isoleucine biosynthesis II Thimo_0382 PWY-5103 L-isoleucine biosynthesis III Thimo_0382 PWY-5104 L-isoleucine biosynthesis IV Thimo_0382 PWY-5938 (R)-acetoin biosynthesis I Thimo_0382 PWY-5939 (R)-acetoin biosynthesis II Thimo_0382 PWY-6389 (S)-acetoin biosynthesis Thimo_0382 PWY-7111 pyruvate fermentation to isobutanol (engineered) Thimo_0383 PWY-5101 L-isoleucine biosynthesis II Thimo_0383 PWY-5103 L-isoleucine biosynthesis III Thimo_0383 PWY-5104 L-isoleucine biosynthesis IV Thimo_0383 PWY-5938 (R)-acetoin biosynthesis I Thimo_0383 PWY-5939 (R)-acetoin biosynthesis II Thimo_0383 PWY-6389 (S)-acetoin biosynthesis Thimo_0383 PWY-7111 pyruvate fermentation to isobutanol (engineered) Thimo_0384 PWY-5101 L-isoleucine biosynthesis II Thimo_0384 PWY-5103 L-isoleucine biosynthesis III Thimo_0384 PWY-5104 L-isoleucine biosynthesis IV Thimo_0384 PWY-7111 pyruvate fermentation to isobutanol (engineered) Thimo_0415 PWY-2723 trehalose degradation V Thimo_0415 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Thimo_0415 PWY-5661 GDP-glucose biosynthesis Thimo_0415 PWY-7238 sucrose biosynthesis II Thimo_0415 PWY-7385 1,3-propanediol biosynthesis (engineered) Thimo_0418 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Thimo_0418 PWY-6855 chitin degradation I (archaea) Thimo_0418 PWY-6906 chitin derivatives degradation Thimo_0419 PWY-5964 guanylyl molybdenum cofactor biosynthesis Thimo_0437 PWY-5971 palmitate biosynthesis II (bacteria and plants) Thimo_0437 PWY-5973 cis-vaccenate biosynthesis Thimo_0437 PWY-5989 stearate biosynthesis II (bacteria and plants) Thimo_0437 PWY-6113 superpathway of mycolate biosynthesis Thimo_0437 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Thimo_0437 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_0437 PWY-7096 triclosan resistance Thimo_0437 PWYG-321 mycolate biosynthesis Thimo_0466 PWY-3781 aerobic respiration I (cytochrome c) Thimo_0466 PWY-4302 aerobic respiration III (alternative oxidase pathway) Thimo_0466 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_0466 PWY-5690 TCA cycle II (plants and fungi) Thimo_0466 PWY-6728 methylaspartate cycle Thimo_0466 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0466 PWY-7254 TCA cycle VII (acetate-producers) Thimo_0466 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_0467 PWY-3781 aerobic respiration I (cytochrome c) Thimo_0467 PWY-4302 aerobic respiration III (alternative oxidase pathway) Thimo_0467 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_0467 PWY-5690 TCA cycle II (plants and fungi) Thimo_0467 PWY-6728 methylaspartate cycle Thimo_0467 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_0467 PWY-7254 TCA cycle VII (acetate-producers) Thimo_0467 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_0490 PWY-5386 methylglyoxal degradation I Thimo_0495 PWY-2201 folate transformations I Thimo_0495 PWY-3841 folate transformations II Thimo_0502 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Thimo_0502 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Thimo_0502 PWY-6269 adenosylcobalamin salvage from cobinamide II Thimo_0503 PWY-7376 cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) Thimo_0518 PWY-6478 GDP-D-glycero-α-D-manno-heptose biosynthesis Thimo_0559 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_0559 PWY-6148 tetrahydromethanopterin biosynthesis Thimo_0559 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Thimo_0559 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Thimo_0560 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_0560 PWY-6148 tetrahydromethanopterin biosynthesis Thimo_0560 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Thimo_0560 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Thimo_0577 PWY-6703 preQ0 biosynthesis Thimo_0582 PWY-1042 glycolysis IV (plant cytosol) Thimo_0582 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_0582 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_0582 PWY-7003 glycerol degradation to butanol Thimo_0597 PWY-3781 aerobic respiration I (cytochrome c) Thimo_0597 PWY-4302 aerobic respiration III (alternative oxidase pathway) Thimo_0597 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Thimo_0597 PWY-6692 Fe(II) oxidation Thimo_0617 PWY-5381 pyridine nucleotide cycling (plants) Thimo_0618 PWY-1722 formate reduction to 5,10-methylenetetrahydrofolate Thimo_0618 PWY-2201 folate transformations I Thimo_0618 PWY-3841 folate transformations II Thimo_0618 PWY-5030 L-histidine degradation III Thimo_0618 PWY-5497 purine nucleobases degradation II (anaerobic) Thimo_0618 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Thimo_0666 PWY-5723 Rubisco shunt Thimo_0680 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Thimo_0681 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Thimo_0691 PWY-6123 inosine-5'-phosphate biosynthesis I Thimo_0691 PWY-7234 inosine-5'-phosphate biosynthesis III Thimo_0710 PWY-6871 3-methylbutanol biosynthesis Thimo_0714 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Thimo_0714 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_0714 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Thimo_0714 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Thimo_0725 PWY-7560 methylerythritol phosphate pathway II Thimo_0730 PWY-5971 palmitate biosynthesis II (bacteria and plants) Thimo_0730 PWY-5973 cis-vaccenate biosynthesis Thimo_0730 PWY-5989 stearate biosynthesis II (bacteria and plants) Thimo_0730 PWY-5994 palmitate biosynthesis I (animals and fungi) Thimo_0730 PWY-6113 superpathway of mycolate biosynthesis Thimo_0730 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Thimo_0730 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_0730 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_0730 PWYG-321 mycolate biosynthesis Thimo_0734 PWY-7560 methylerythritol phosphate pathway II Thimo_0740 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_0740 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_0740 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_0740 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Thimo_0741 PWY-6749 CMP-legionaminate biosynthesis I Thimo_0742 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_0742 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_0744 PWY-5686 UMP biosynthesis Thimo_0749 PWY-3341 L-proline biosynthesis III Thimo_0749 PWY-4981 L-proline biosynthesis II (from arginine) Thimo_0749 PWY-6344 L-ornithine degradation II (Stickland reaction) Thimo_0750 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Thimo_0751 PWY-7206 pyrimidine deoxyribonucleotides dephosphorylation Thimo_0755 PWY-7221 guanosine ribonucleotides de novo biosynthesis Thimo_0760 PWY-6123 inosine-5'-phosphate biosynthesis I Thimo_0760 PWY-6124 inosine-5'-phosphate biosynthesis II Thimo_0760 PWY-7234 inosine-5'-phosphate biosynthesis III Thimo_0762 PWY-5386 methylglyoxal degradation I Thimo_0763 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_0763 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_0763 PWY-7560 methylerythritol phosphate pathway II Thimo_0765 PWY-5532 adenosine nucleotides degradation IV Thimo_0765 PWY-5723 Rubisco shunt Thimo_0766 PWY-5532 adenosine nucleotides degradation IV Thimo_0766 PWY-5723 Rubisco shunt Thimo_0769 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_0769 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_0769 PWY-7560 methylerythritol phosphate pathway II Thimo_0826 PWY-1801 formaldehyde oxidation II (glutathione-dependent) Thimo_0836 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_0836 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_0844 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_0884 PWY-5532 adenosine nucleotides degradation IV Thimo_0884 PWY-5723 Rubisco shunt Thimo_0887 PWY-5123 trans, trans-farnesyl diphosphate biosynthesis Thimo_0887 PWY-6174 mevalonate pathway II (archaea) Thimo_0887 PWY-6383 mono-trans, poly-cis decaprenyl phosphate biosynthesis Thimo_0887 PWY-6859 all-trans-farnesol biosynthesis Thimo_0887 PWY-7102 bisabolene biosynthesis Thimo_0887 PWY-7391 isoprene biosynthesis II (engineered) Thimo_0887 PWY-7524 mevalonate pathway III (archaea) Thimo_0887 PWY-7560 methylerythritol phosphate pathway II Thimo_0887 PWY-922 mevalonate pathway I Thimo_0923 PWY-6936 seleno-amino acid biosynthesis Thimo_0934 PWY-4381 fatty acid biosynthesis initiation I Thimo_0934 PWY-5743 3-hydroxypropanoate cycle Thimo_0934 PWY-5744 glyoxylate assimilation Thimo_0934 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Thimo_0934 PWY-6679 jadomycin biosynthesis Thimo_0934 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_0976 PWY-5659 GDP-mannose biosynthesis Thimo_0976 PWY-6073 alginate biosynthesis I (algal) Thimo_0976 PWY-6082 alginate biosynthesis II (bacterial) Thimo_0976 PWY-882 L-ascorbate biosynthesis I (L-galactose pathway) Thimo_0977 PWY-6749 CMP-legionaminate biosynthesis I Thimo_1018 PWY-6986 alginate degradation Thimo_1019 PWY-7335 UDP-N-acetyl-α-D-mannosaminouronate biosynthesis Thimo_1041 PWY-4081 glutathione redox reactions I Thimo_1052 PWY-6672 cis-genanyl-CoA degradation Thimo_1052 PWY-7118 chitin degradation to ethanol Thimo_1054 PWY-6728 methylaspartate cycle Thimo_1054 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_1054 PWY-7118 chitin degradation to ethanol Thimo_1054 PWY-7294 xylose degradation IV Thimo_1054 PWY-7295 L-arabinose degradation IV Thimo_1057 PWY-6700 queuosine biosynthesis Thimo_1060 PWY-6700 queuosine biosynthesis Thimo_1064 PWY-2301 myo-inositol biosynthesis Thimo_1064 PWY-4702 phytate degradation I Thimo_1064 PWY-6363 D-myo-inositol (1,4,5)-trisphosphate degradation Thimo_1066 PWY-6936 seleno-amino acid biosynthesis Thimo_1066 PWY-7274 D-cycloserine biosynthesis Thimo_1071 PWY-4983 L-citrulline-nitric oxide cycle Thimo_1071 PWY-4984 urea cycle Thimo_1071 PWY-5 canavanine biosynthesis Thimo_1071 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_1071 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_1075 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_1075 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_1078 PWY-3841 folate transformations II Thimo_1078 PWY-6614 tetrahydrofolate biosynthesis Thimo_1080 PWY-5381 pyridine nucleotide cycling (plants) Thimo_1080 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Thimo_1085 PWY-5046 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Thimo_1085 PWY-5084 2-oxoglutarate decarboxylation to succinyl-CoA Thimo_1087 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_1087 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_1087 PWY-7560 methylerythritol phosphate pathway II Thimo_1101 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_1110 PWY-5491 diethylphosphate degradation Thimo_1129 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_1129 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_1140 PWY-5523 5,6-dimethylbenzimidazole biosynthesis Thimo_1140 PWY-6167 flavin biosynthesis II (archaea) Thimo_1140 PWY-6168 flavin biosynthesis III (fungi) Thimo_1169 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_1171 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_1173 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Thimo_1174 PWY-6749 CMP-legionaminate biosynthesis I Thimo_1175 PWY-5958 acridone alkaloid biosynthesis Thimo_1175 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Thimo_1175 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Thimo_1180 PWY-6834 spermidine biosynthesis III Thimo_1187 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_1187 PWY-5723 Rubisco shunt Thimo_1198 PWY-1042 glycolysis IV (plant cytosol) Thimo_1198 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_1198 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_1198 PWY-6531 mannitol cycle Thimo_1198 PWY-7385 1,3-propanediol biosynthesis (engineered) Thimo_1205 PWY-5340 sulfate activation for sulfonation Thimo_1211 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_1211 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_1211 PWY-6164 3-dehydroquinate biosynthesis I Thimo_1213 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_1213 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_1213 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_1213 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_1213 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Thimo_1213 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Thimo_1213 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Thimo_1213 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Thimo_1223 PWY-5162 2-oxopentenoate degradation Thimo_1235 PWY-5392 reductive TCA cycle II Thimo_1235 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_1235 PWY-5690 TCA cycle II (plants and fungi) Thimo_1235 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_1235 PWY-6728 methylaspartate cycle Thimo_1235 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_1235 PWY-7254 TCA cycle VII (acetate-producers) Thimo_1235 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_1264 PWY-1622 formaldehyde assimilation I (serine pathway) Thimo_1264 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Thimo_1264 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_1264 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_1264 PWY-6146 Methanobacterium thermoautotrophicum biosynthetic metabolism Thimo_1264 PWY-6549 L-glutamine biosynthesis III Thimo_1264 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Thimo_1264 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Thimo_1264 PWY-7124 ethylene biosynthesis V (engineered) Thimo_1290 PWY-4361 S-methyl-5-thio-α-D-ribose 1-phosphate degradation Thimo_1290 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Thimo_1297 PWY-6871 3-methylbutanol biosynthesis Thimo_1302 PWY-3461 L-tyrosine biosynthesis II Thimo_1302 PWY-3462 L-phenylalanine biosynthesis II Thimo_1302 PWY-6120 L-tyrosine biosynthesis III Thimo_1302 PWY-6627 salinosporamide A biosynthesis Thimo_1302 PWY-7432 L-phenylalanine biosynthesis III (cytosolic, plants) Thimo_1304 PWY-7303 3-dimethylallyl-4-hydroxybenzoate biosynthesis Thimo_1321 PWY-7176 UTP and CTP de novo biosynthesis Thimo_1321 PWY-7177 UTP and CTP dephosphorylation II Thimo_1321 PWY-7185 UTP and CTP dephosphorylation I Thimo_1322 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_1322 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_1323 PWY-1042 glycolysis IV (plant cytosol) Thimo_1323 PWY-1622 formaldehyde assimilation I (serine pathway) Thimo_1323 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Thimo_1323 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_1323 PWY-5723 Rubisco shunt Thimo_1323 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_1323 PWY-6886 1-butanol autotrophic biosynthesis Thimo_1323 PWY-6901 superpathway of glucose and xylose degradation Thimo_1323 PWY-7003 glycerol degradation to butanol Thimo_1323 PWY-7124 ethylene biosynthesis V (engineered) Thimo_1323 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Thimo_1325 PWY-7560 methylerythritol phosphate pathway II Thimo_1326 PWY-7560 methylerythritol phosphate pathway II Thimo_1329 PWY-5381 pyridine nucleotide cycling (plants) Thimo_1329 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Thimo_1329 PWY-6596 adenosine nucleotides degradation I Thimo_1329 PWY-6606 guanosine nucleotides degradation II Thimo_1329 PWY-6607 guanosine nucleotides degradation I Thimo_1329 PWY-6608 guanosine nucleotides degradation III Thimo_1329 PWY-7185 UTP and CTP dephosphorylation I Thimo_1338 PWY-3781 aerobic respiration I (cytochrome c) Thimo_1338 PWY-4521 arsenite oxidation I (respiratory) Thimo_1338 PWY-6692 Fe(II) oxidation Thimo_1338 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_1339 PWY-3781 aerobic respiration I (cytochrome c) Thimo_1339 PWY-4521 arsenite oxidation I (respiratory) Thimo_1339 PWY-6692 Fe(II) oxidation Thimo_1339 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_1346 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Thimo_1346 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Thimo_1346 PWY-7382 lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast) Thimo_1347 PWY-3961 phosphopantothenate biosynthesis II Thimo_1359 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_1359 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Thimo_1360 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_1360 PWY-5189 tetrapyrrole biosynthesis II (from glycine) Thimo_1374 PWY-7158 L-phenylalanine degradation V Thimo_1383 PWY-6785 hydrogen production VIII Thimo_1389 PWY-1622 formaldehyde assimilation I (serine pathway) Thimo_1389 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_1405 PWY-4321 L-glutamate degradation IV Thimo_1436 PWY-723 alkylnitronates degradation Thimo_1437 PWY-6012 acyl carrier protein metabolism I Thimo_1437 PWY-6012-1 acyl carrier protein metabolism II (mammalian) Thimo_1455 PWY-5041 S-adenosyl-L-methionine cycle II Thimo_1455 PWY-6151 S-adenosyl-L-methionine cycle I Thimo_1455 PWY-6936 seleno-amino acid biosynthesis Thimo_1455 PWY-702 L-methionine biosynthesis II Thimo_1456 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_1456 PWY-6148 tetrahydromethanopterin biosynthesis Thimo_1456 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Thimo_1456 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Thimo_1464 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_1464 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_1468 PWY-6123 inosine-5'-phosphate biosynthesis I Thimo_1468 PWY-6124 inosine-5'-phosphate biosynthesis II Thimo_1468 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_1468 PWY-7234 inosine-5'-phosphate biosynthesis III Thimo_1486 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_1487 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_1514 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Thimo_1524 PWY-6854 ethylene biosynthesis III (microbes) Thimo_1525 PWY-6854 ethylene biosynthesis III (microbes) Thimo_1547 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_1547 PWY-5723 Rubisco shunt Thimo_1547 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_1547 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_1547 PWY-7560 methylerythritol phosphate pathway II Thimo_1589 PWY-101 photosynthesis light reactions Thimo_1589 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Thimo_1615 PWY-6936 seleno-amino acid biosynthesis Thimo_1623 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_1623 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_1628 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_1628 PWY-5723 Rubisco shunt Thimo_1632 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Thimo_1632 PWY-6613 tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate Thimo_1633 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Thimo_1633 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Thimo_1633 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Thimo_1634 PWY-5269 cardiolipin biosynthesis II Thimo_1634 PWY-5668 cardiolipin biosynthesis I Thimo_1636 PWY-6785 hydrogen production VIII Thimo_1646 PWY-5676 acetyl-CoA fermentation to butanoate II Thimo_1646 PWY-5741 ethylmalonyl-CoA pathway Thimo_1646 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Thimo_1647 PWY-5663 tetrahydrobiopterin biosynthesis I Thimo_1647 PWY-5664 tetrahydrobiopterin biosynthesis II Thimo_1647 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_1647 PWY-6703 preQ0 biosynthesis Thimo_1647 PWY-6983 tetrahydrobiopterin biosynthesis III Thimo_1647 PWY-7442 drosopterin and aurodrosopterin biosynthesis Thimo_1648 PWY-3781 aerobic respiration I (cytochrome c) Thimo_1648 PWY-6692 Fe(II) oxidation Thimo_1648 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) Thimo_1648 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_1682 PWY-7039 phosphatidate metabolism, as a signaling molecule Thimo_1684 PWY-6823 molybdenum cofactor biosynthesis Thimo_1694 PWY-6938 NADH repair Thimo_1695 PWY-4983 L-citrulline-nitric oxide cycle Thimo_1695 PWY-4984 urea cycle Thimo_1695 PWY-5 canavanine biosynthesis Thimo_1695 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_1695 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_1698 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_1698 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_1698 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_1698 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_1698 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Thimo_1698 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Thimo_1698 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Thimo_1698 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Thimo_1703 PWY-5057 L-valine degradation II Thimo_1703 PWY-5076 L-leucine degradation III Thimo_1703 PWY-5078 L-isoleucine degradation II Thimo_1703 PWY-5101 L-isoleucine biosynthesis II Thimo_1703 PWY-5103 L-isoleucine biosynthesis III Thimo_1703 PWY-5104 L-isoleucine biosynthesis IV Thimo_1703 PWY-5108 L-isoleucine biosynthesis V Thimo_1712 PWY-5686 UMP biosynthesis Thimo_1713 PWY-3801 sucrose degradation II (sucrose synthase) Thimo_1713 PWY-6527 stachyose degradation Thimo_1713 PWY-6981 chitin biosynthesis Thimo_1713 PWY-7238 sucrose biosynthesis II Thimo_1713 PWY-7343 UDP-glucose biosynthesis Thimo_1721 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_1721 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_1734 PWY-6890 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis Thimo_1735 PWY-5316 nicotine biosynthesis Thimo_1735 PWY-5381 pyridine nucleotide cycling (plants) Thimo_1735 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Thimo_1735 PWY-7342 superpathway of nicotine biosynthesis Thimo_1783 PWY-5663 tetrahydrobiopterin biosynthesis I Thimo_1783 PWY-5664 tetrahydrobiopterin biosynthesis II Thimo_1783 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_1783 PWY-6703 preQ0 biosynthesis Thimo_1783 PWY-6983 tetrahydrobiopterin biosynthesis III Thimo_1783 PWY-7442 drosopterin and aurodrosopterin biosynthesis Thimo_1800 PWY-5663 tetrahydrobiopterin biosynthesis I Thimo_1800 PWY-5664 tetrahydrobiopterin biosynthesis II Thimo_1800 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_1800 PWY-6703 preQ0 biosynthesis Thimo_1800 PWY-6983 tetrahydrobiopterin biosynthesis III Thimo_1800 PWY-7442 drosopterin and aurodrosopterin biosynthesis Thimo_1810 PWY-5392 reductive TCA cycle II Thimo_1810 PWY-5537 pyruvate fermentation to acetate V Thimo_1810 PWY-5538 pyruvate fermentation to acetate VI Thimo_1810 PWY-5690 TCA cycle II (plants and fungi) Thimo_1810 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_1810 PWY-6728 methylaspartate cycle Thimo_1810 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_1810 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_1865 PWY-6454 vancomycin resistance I Thimo_1865 PWY-6455 vancomycin resistance II Thimo_1875 PWY-5674 nitrate reduction IV (dissimilatory) Thimo_1876 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_1877 PWY-7205 CMP phosphorylation Thimo_1894 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_1894 PWY-7176 UTP and CTP de novo biosynthesis Thimo_1894 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_1894 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_1894 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Thimo_1894 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_1894 PWY-7205 CMP phosphorylation Thimo_1894 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_1894 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Thimo_1894 PWY-7221 guanosine ribonucleotides de novo biosynthesis Thimo_1894 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Thimo_1894 PWY-7224 purine deoxyribonucleosides salvage Thimo_1894 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Thimo_1894 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Thimo_1901 PWY-5491 diethylphosphate degradation Thimo_1916 PWY-5941 glycogen degradation II (eukaryotic) Thimo_1916 PWY-622 starch biosynthesis Thimo_1916 PWY-6731 starch degradation III Thimo_1916 PWY-6737 starch degradation V Thimo_1916 PWY-7238 sucrose biosynthesis II Thimo_1919 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_1919 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_1920 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_1920 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_1925 PWY-5971 palmitate biosynthesis II (bacteria and plants) Thimo_1925 PWY-5973 cis-vaccenate biosynthesis Thimo_1925 PWY-5989 stearate biosynthesis II (bacteria and plants) Thimo_1925 PWY-5994 palmitate biosynthesis I (animals and fungi) Thimo_1925 PWY-6113 superpathway of mycolate biosynthesis Thimo_1925 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Thimo_1925 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_1925 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_1925 PWYG-321 mycolate biosynthesis Thimo_1933 PWY-1281 sulfoacetaldehyde degradation I Thimo_1933 PWY-5482 pyruvate fermentation to acetate II Thimo_1933 PWY-5485 pyruvate fermentation to acetate IV Thimo_1933 PWY-5497 purine nucleobases degradation II (anaerobic) Thimo_1933 PWY-6637 sulfolactate degradation II Thimo_1934 PWY-5482 pyruvate fermentation to acetate II Thimo_1934 PWY-5485 pyruvate fermentation to acetate IV Thimo_1934 PWY-5497 purine nucleobases degradation II (anaerobic) Thimo_1948 PWY-5278 sulfite oxidation III Thimo_1948 PWY-5340 sulfate activation for sulfonation Thimo_1948 PWY-6683 sulfate reduction III (assimilatory) Thimo_1948 PWY-6932 selenate reduction Thimo_2006 PWY-5316 nicotine biosynthesis Thimo_2006 PWY-7342 superpathway of nicotine biosynthesis Thimo_2013 PWY-5941 glycogen degradation II (eukaryotic) Thimo_2013 PWY-621 sucrose degradation III (sucrose invertase) Thimo_2013 PWY-6724 starch degradation II Thimo_2013 PWY-6737 starch degradation V Thimo_2013 PWY-7238 sucrose biosynthesis II Thimo_2042 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_2042 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_2072 PWY-6902 chitin degradation II Thimo_2078 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_2081 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_2082 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_2101 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_2101 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) Thimo_2101 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Thimo_2101 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_2112 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2116 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Thimo_2116 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_2116 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Thimo_2130 PWY-6829 tRNA methylation (yeast) Thimo_2130 PWY-7285 methylwyosine biosynthesis Thimo_2130 PWY-7286 7-(3-amino-3-carboxypropyl)-wyosine biosynthesis Thimo_2162 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_2162 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_2162 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_2162 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_2162 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Thimo_2162 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Thimo_2162 PWY-7226 guanosine deoxyribonucleotides de novo biosynthesis I Thimo_2162 PWY-7227 adenosine deoxyribonucleotides de novo biosynthesis Thimo_2172 PWY-1042 glycolysis IV (plant cytosol) Thimo_2172 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_2172 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2172 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_2172 PWY-7385 1,3-propanediol biosynthesis (engineered) Thimo_2173 PWY-1042 glycolysis IV (plant cytosol) Thimo_2173 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Thimo_2173 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2173 PWY-5723 Rubisco shunt Thimo_2173 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_2173 PWY-6886 1-butanol autotrophic biosynthesis Thimo_2173 PWY-6901 superpathway of glucose and xylose degradation Thimo_2173 PWY-7003 glycerol degradation to butanol Thimo_2173 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Thimo_2173 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Thimo_2174 PWY-1042 glycolysis IV (plant cytosol) Thimo_2174 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2174 PWY-6886 1-butanol autotrophic biosynthesis Thimo_2174 PWY-6901 superpathway of glucose and xylose degradation Thimo_2174 PWY-7003 glycerol degradation to butanol Thimo_2175 PWY-1042 glycolysis IV (plant cytosol) Thimo_2175 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2175 PWY-6901 superpathway of glucose and xylose degradation Thimo_2175 PWY-7003 glycerol degradation to butanol Thimo_2176 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_2176 PWY-5723 Rubisco shunt Thimo_2176 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_2176 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_2176 PWY-6901 superpathway of glucose and xylose degradation Thimo_2176 PWY-7560 methylerythritol phosphate pathway II Thimo_2178 PWY-5041 S-adenosyl-L-methionine cycle II Thimo_2178 PWY-5912 2'-deoxymugineic acid phytosiderophore biosynthesis Thimo_2179 PWY-5041 S-adenosyl-L-methionine cycle II Thimo_2180 PWY-2201 folate transformations I Thimo_2180 PWY-3841 folate transformations II Thimo_2181 PWY-6840 homoglutathione biosynthesis Thimo_2181 PWY-7255 ergothioneine biosynthesis I (bacteria) Thimo_2189 PWY-5381 pyridine nucleotide cycling (plants) Thimo_2189 PWY-5653 NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde Thimo_2192 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_2218 PWY-6832 2-aminoethylphosphonate degradation II Thimo_2220 PWY-5669 phosphatidylethanolamine biosynthesis I Thimo_2225 PWY-5381 pyridine nucleotide cycling (plants) Thimo_2225 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Thimo_2225 PWY-6596 adenosine nucleotides degradation I Thimo_2225 PWY-6606 guanosine nucleotides degradation II Thimo_2225 PWY-6607 guanosine nucleotides degradation I Thimo_2225 PWY-6608 guanosine nucleotides degradation III Thimo_2225 PWY-7185 UTP and CTP dephosphorylation I Thimo_2234 PWY-5316 nicotine biosynthesis Thimo_2234 PWY-7342 superpathway of nicotine biosynthesis Thimo_2236 PWY-5274 sulfide oxidation II (sulfide dehydrogenase) Thimo_2263 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_2264 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_2281 PWY-5686 UMP biosynthesis Thimo_2282 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_2282 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Thimo_2283 PWY-5855 ubiquinol-7 biosynthesis (prokaryotic) Thimo_2283 PWY-5856 ubiquinol-9 biosynthesis (prokaryotic) Thimo_2283 PWY-5857 ubiquinol-10 biosynthesis (prokaryotic) Thimo_2283 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic) Thimo_2283 PWY-5871 ubiquinol-9 biosynthesis (eukaryotic) Thimo_2283 PWY-5872 ubiquinol-10 biosynthesis (eukaryotic) Thimo_2283 PWY-5873 ubiquinol-7 biosynthesis (eukaryotic) Thimo_2283 PWY-6708 ubiquinol-8 biosynthesis (prokaryotic) Thimo_2283 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Thimo_2283 PWY-7233 ubiquinol-6 bypass biosynthesis (eukaryotic) Thimo_2286 PWY-3781 aerobic respiration I (cytochrome c) Thimo_2286 PWY-6692 Fe(II) oxidation Thimo_2286 PWY-7082 ammonia oxidation IV (autotrophic ammonia oxidizers) Thimo_2286 PWY-7279 aerobic respiration II (cytochrome c) (yeast) Thimo_2299 PWY-5676 acetyl-CoA fermentation to butanoate II Thimo_2299 PWY-5741 ethylmalonyl-CoA pathway Thimo_2299 PWY-7216 (R)- and (S)-3-hydroxybutanoate biosynthesis Thimo_2320 PWY-5988 wound-induced proteolysis I Thimo_2320 PWY-6018 seed germination protein turnover Thimo_2330 PWY-6281 L-selenocysteine biosynthesis II (archaea and eukaryotes) Thimo_2343 PWY-2661 trehalose biosynthesis V Thimo_2349 PWY-5669 phosphatidylethanolamine biosynthesis I Thimo_2352 PWY-5382 hydrogen oxidation II (aerobic, NAD) Thimo_2352 PWY-6758 hydrogen production II Thimo_2371 PWY-5101 L-isoleucine biosynthesis II Thimo_2371 PWY-5103 L-isoleucine biosynthesis III Thimo_2371 PWY-5104 L-isoleucine biosynthesis IV Thimo_2371 PWY-7111 pyruvate fermentation to isobutanol (engineered) Thimo_2375 PWY-6545 pyrimidine deoxyribonucleotides de novo biosynthesis III Thimo_2375 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_2375 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_2375 PWY-7197 pyrimidine deoxyribonucleotide phosphorylation Thimo_2375 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_2375 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_2377 PWY-6543 4-aminobenzoate biosynthesis Thimo_2377 PWY-6722 candicidin biosynthesis Thimo_2380 PWY-5367 petroselinate biosynthesis Thimo_2380 PWY-5971 palmitate biosynthesis II (bacteria and plants) Thimo_2380 PWY-5973 cis-vaccenate biosynthesis Thimo_2380 PWY-5989 stearate biosynthesis II (bacteria and plants) Thimo_2380 PWY-5994 palmitate biosynthesis I (animals and fungi) Thimo_2380 PWY-6113 superpathway of mycolate biosynthesis Thimo_2380 PWY-6282 palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) Thimo_2380 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_2380 PWY-6951 Thimo_2380|Thimo_2380|YP_007244746.1|GeneID:14304643 Thimo_2380 PWY-7053 docosahexaenoate biosynthesis I (lower eukaryotes) Thimo_2380 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_2380 PWYG-321 mycolate biosynthesis Thimo_2381 PWY-4381 fatty acid biosynthesis initiation I Thimo_2381 PWY-6799 fatty acid biosynthesis (plant mitochondria) Thimo_2381 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_2382 PWY-4381 fatty acid biosynthesis initiation I Thimo_2386 PWY-7219 adenosine ribonucleotides de novo biosynthesis Thimo_2393 PWY-2781 cis-zeatin biosynthesis Thimo_2415 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_2415 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_2424 PWY-6823 molybdenum cofactor biosynthesis Thimo_2424 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_2424 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_2424 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Thimo_2427 PWY-2941 L-lysine biosynthesis II Thimo_2427 PWY-2942 L-lysine biosynthesis III Thimo_2427 PWY-5097 L-lysine biosynthesis VI Thimo_2427 PWY-6559 spermidine biosynthesis II Thimo_2427 PWY-6562 norspermidine biosynthesis Thimo_2427 PWY-7153 grixazone biosynthesis Thimo_2433 PWY-5692 allantoin degradation to glyoxylate II Thimo_2433 PWY-5698 allantoin degradation to ureidoglycolate II (ammonia producing) Thimo_2452 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Thimo_2452 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Thimo_2452 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Thimo_2491 PWY-7560 methylerythritol phosphate pathway II Thimo_2534 PWY-2941 L-lysine biosynthesis II Thimo_2534 PWY-2942 L-lysine biosynthesis III Thimo_2534 PWY-5097 L-lysine biosynthesis VI Thimo_2539 PWY-5083 NAD/NADH phosphorylation and dephosphorylation Thimo_2539 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_2539 PWY-7269 NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast) Thimo_2546 PWY-6749 CMP-legionaminate biosynthesis I Thimo_2547 PWY-6614 tetrahydrofolate biosynthesis Thimo_2556 PWY-5686 UMP biosynthesis Thimo_2557 PWY-5686 UMP biosynthesis Thimo_2563 PWY-40 putrescine biosynthesis I Thimo_2563 PWY-43 putrescine biosynthesis II Thimo_2563 PWY-6305 putrescine biosynthesis IV Thimo_2563 PWY-6834 spermidine biosynthesis III Thimo_2580 PWY-4041 γ-glutamyl cycle Thimo_2580 PWY-5826 hypoglycin biosynthesis Thimo_2585 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_2585 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_2616 PWY-5269 cardiolipin biosynthesis II Thimo_2616 PWY-5668 cardiolipin biosynthesis I Thimo_2629 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_2630 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2640 PWY-5194 siroheme biosynthesis Thimo_2640 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Thimo_2643 PWY-6121 5-aminoimidazole ribonucleotide biosynthesis I Thimo_2643 PWY-6122 5-aminoimidazole ribonucleotide biosynthesis II Thimo_2643 PWY-6277 superpathway of 5-aminoimidazole ribonucleotide biosynthesis Thimo_2643 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Thimo_2646 PWY-2161 folate polyglutamylation Thimo_2647 PWY-4381 fatty acid biosynthesis initiation I Thimo_2647 PWY-5743 3-hydroxypropanoate cycle Thimo_2647 PWY-5744 glyoxylate assimilation Thimo_2647 PWY-5789 3-hydroxypropanoate/4-hydroxybutanate cycle Thimo_2647 PWY-6679 jadomycin biosynthesis Thimo_2647 PWY-7388 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Thimo_2653 PWY-2941 L-lysine biosynthesis II Thimo_2653 PWY-2942 L-lysine biosynthesis III Thimo_2653 PWY-5097 L-lysine biosynthesis VI Thimo_2653 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_2653 PWY-6559 spermidine biosynthesis II Thimo_2653 PWY-6562 norspermidine biosynthesis Thimo_2653 PWY-7153 grixazone biosynthesis Thimo_2653 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_2654 PWY-7396 butanol and isobutanol biosynthesis (engineered) Thimo_2676 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_2676 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Thimo_2676 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_2679 PWY-5747 2-methylcitrate cycle II Thimo_2710 PWY-6823 molybdenum cofactor biosynthesis Thimo_2710 PWY-6891 thiazole biosynthesis II (Bacillus) Thimo_2710 PWY-6892 thiazole biosynthesis I (E. coli) Thimo_2710 PWY-7250 [2Fe-2S] iron-sulfur cluster biosynthesis Thimo_2739 PWY-5344 L-homocysteine biosynthesis Thimo_2739 PWY-7174 S-methyl-5-thio-α-D-ribose 1-phosphate degradation II Thimo_2750 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_2750 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_2757 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_2757 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_2772 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_2772 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_2776 PWY-6987 lipoate biosynthesis and incorporation III (Bacillus) Thimo_2776 PWY-7381 lipoate biosynthesis and incorporation (glycine cleavage system, yeast) Thimo_2777 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_2777 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_2786 PWY-5921 glutaminyl-tRNAgln biosynthesis via transamidation Thimo_2795 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_2808 PWY-5532 adenosine nucleotides degradation IV Thimo_2808 PWY-5723 Rubisco shunt Thimo_2830 PWY-5392 reductive TCA cycle II Thimo_2830 PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Thimo_2830 PWY-5690 TCA cycle II (plants and fungi) Thimo_2830 PWY-5913 TCA cycle VI (obligate autotrophs) Thimo_2830 PWY-6728 methylaspartate cycle Thimo_2830 PWY-6969 TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase) Thimo_2830 PWY-7254 TCA cycle VII (acetate-producers) Thimo_2830 PWY-7384 anaerobic energy metabolism (invertebrates, mitochondrial) Thimo_2879 PWY-7346 UDP-α-D-glucuronate biosynthesis (from UDP-glucose) Thimo_2891 PWY-1042 glycolysis IV (plant cytosol) Thimo_2891 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Thimo_2891 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_2891 PWY-5723 Rubisco shunt Thimo_2891 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_2891 PWY-6886 1-butanol autotrophic biosynthesis Thimo_2891 PWY-6901 superpathway of glucose and xylose degradation Thimo_2891 PWY-7003 glycerol degradation to butanol Thimo_2891 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Thimo_2891 PWY-7383 anaerobic energy metabolism (invertebrates, cytosol) Thimo_2905 PWY-7204 pyridoxal 5'-phosphate salvage II (plants) Thimo_2905 PWY-7282 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast) Thimo_2947 PWY-5532 adenosine nucleotides degradation IV Thimo_2947 PWY-5723 Rubisco shunt Thimo_2948 PWY-5532 adenosine nucleotides degradation IV Thimo_2948 PWY-5723 Rubisco shunt Thimo_2956 PWY-7158 L-phenylalanine degradation V Thimo_2965 PWY-2941 L-lysine biosynthesis II Thimo_2965 PWY-2942 L-lysine biosynthesis III Thimo_2965 PWY-5097 L-lysine biosynthesis VI Thimo_2971 PWY-6703 preQ0 biosynthesis Thimo_2997 PWY-101 photosynthesis light reactions Thimo_2997 PWY-6785 hydrogen production VIII Thimo_2998 PWY-101 photosynthesis light reactions Thimo_2998 PWY-6785 hydrogen production VIII Thimo_3003 PWY-5526 bacteriochlorophyll a biosynthesis Thimo_3003 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3003 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3004 PWY-5526 bacteriochlorophyll a biosynthesis Thimo_3004 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3004 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3005 PWY-5526 bacteriochlorophyll a biosynthesis Thimo_3013 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3013 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3014 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3014 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3015 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3015 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3021 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3021 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3022 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3022 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3023 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3023 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3024 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3024 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3025 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3025 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3027 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Thimo_3028 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_3029 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_3030 PWY-6519 8-amino-7-oxononanoate biosynthesis I Thimo_3030 PWY-6578 8-amino-7-oxononanoate biosynthesis III Thimo_3030 PWY-7147 8-amino-7-oxononanoate biosynthesis II Thimo_3031 PWY-7380 biotin biosynthesis from 8-amino-7-oxononanoate II Thimo_3038 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_3043 PWY-6749 CMP-legionaminate biosynthesis I Thimo_3054 PWY-3221 dTDP-L-rhamnose biosynthesis II Thimo_3054 PWY-6808 dTDP-D-forosamine biosynthesis Thimo_3054 PWY-6942 dTDP-D-desosamine biosynthesis Thimo_3054 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Thimo_3054 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Thimo_3054 PWY-6974 dTDP-L-olivose biosynthesis Thimo_3054 PWY-6976 dTDP-L-mycarose biosynthesis Thimo_3054 PWY-7104 dTDP-L-megosamine biosynthesis Thimo_3054 PWY-7301 dTDP-β-L-noviose biosynthesis Thimo_3054 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Thimo_3054 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Thimo_3054 PWY-7316 dTDP-N-acetylviosamine biosynthesis Thimo_3054 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Thimo_3054 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Thimo_3054 PWY-7414 dTDP-α-D-mycaminose biosynthesis Thimo_3054 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Thimo_3055 PWY-3221 dTDP-L-rhamnose biosynthesis II Thimo_3055 PWY-6808 dTDP-D-forosamine biosynthesis Thimo_3055 PWY-6942 dTDP-D-desosamine biosynthesis Thimo_3055 PWY-6953 dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis Thimo_3055 PWY-6973 dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis Thimo_3055 PWY-6974 dTDP-L-olivose biosynthesis Thimo_3055 PWY-6976 dTDP-L-mycarose biosynthesis Thimo_3055 PWY-7104 dTDP-L-megosamine biosynthesis Thimo_3055 PWY-7301 dTDP-β-L-noviose biosynthesis Thimo_3055 PWY-7312 dTDP-D-β-fucofuranose biosynthesis Thimo_3055 PWY-7315 dTDP-N-acetylthomosamine biosynthesis Thimo_3055 PWY-7316 dTDP-N-acetylviosamine biosynthesis Thimo_3055 PWY-7318 dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis Thimo_3055 PWY-7413 dTDP-6-deoxy-α-D-allose biosynthesis Thimo_3055 PWY-7414 dTDP-α-D-mycaminose biosynthesis Thimo_3055 PWY-7440 dTDP-β-L-4-epi-vancosamine biosynthesis Thimo_3057 PWY-6655 xanthan biosynthesis Thimo_3057 PWY-6658 acetan biosynthesis Thimo_3097 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_3097 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_3097 PWY-6164 3-dehydroquinate biosynthesis I Thimo_3108 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_3108 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_3109 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_3109 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_3110 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_3110 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_3111 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_3111 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) Thimo_3111 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Thimo_3111 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_3113 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_3113 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_3114 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_3114 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Thimo_3114 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_3115 PWY-6386 UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) Thimo_3115 PWY-6387 UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) Thimo_3122 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Thimo_3122 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Thimo_3122 PWY-6269 adenosylcobalamin salvage from cobinamide II Thimo_3131 PWY-5188 tetrapyrrole biosynthesis I (from glutamate) Thimo_3133 PWY-7560 methylerythritol phosphate pathway II Thimo_3138 PWY-3821 galactose degradation III Thimo_3138 PWY-6317 galactose degradation I (Leloir pathway) Thimo_3138 PWY-6397 mycolyl-arabinogalactan-peptidoglycan complex biosynthesis Thimo_3138 PWY-6527 stachyose degradation Thimo_3138 PWY-7328 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Thimo_3138 PWY-7344 UDP-D-galactose biosynthesis Thimo_3234 PWY-3081 L-lysine biosynthesis V Thimo_3234 PWY-6871 3-methylbutanol biosynthesis Thimo_3248 PWY-6823 molybdenum cofactor biosynthesis Thimo_3259 PWY-1281 sulfoacetaldehyde degradation I Thimo_3259 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Thimo_3259 PWY-5482 pyruvate fermentation to acetate II Thimo_3259 PWY-5485 pyruvate fermentation to acetate IV Thimo_3259 PWY-5497 purine nucleobases degradation II (anaerobic) Thimo_3259 PWY-6637 sulfolactate degradation II Thimo_3259 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Thimo_3261 PWY-5855 ubiquinol-7 biosynthesis (prokaryotic) Thimo_3261 PWY-5856 ubiquinol-9 biosynthesis (prokaryotic) Thimo_3261 PWY-5857 ubiquinol-10 biosynthesis (prokaryotic) Thimo_3261 PWY-5870 ubiquinol-8 biosynthesis (eukaryotic) Thimo_3261 PWY-5871 ubiquinol-9 biosynthesis (eukaryotic) Thimo_3261 PWY-5872 ubiquinol-10 biosynthesis (eukaryotic) Thimo_3261 PWY-5873 ubiquinol-7 biosynthesis (eukaryotic) Thimo_3261 PWY-6708 ubiquinol-8 biosynthesis (prokaryotic) Thimo_3261 PWY-7230 ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic) Thimo_3261 PWY-7233 ubiquinol-6 bypass biosynthesis (eukaryotic) Thimo_3274 PWY-2941 L-lysine biosynthesis II Thimo_3274 PWY-5097 L-lysine biosynthesis VI Thimo_3282 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Thimo_3284 PWY-4981 L-proline biosynthesis II (from arginine) Thimo_3284 PWY-4984 urea cycle Thimo_3284 PWY-7400 L-arginine biosynthesis IV (archaebacteria) Thimo_3287 PWY-5674 nitrate reduction IV (dissimilatory) Thimo_3311 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Thimo_3311 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Thimo_3311 PWY-5901 2,3-dihydroxybenzoate biosynthesis Thimo_3311 PWY-6406 salicylate biosynthesis I Thimo_3312 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Thimo_3312 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Thimo_3313 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Thimo_3313 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Thimo_3314 PWY-5839 menaquinol-7 biosynthesis Thimo_3314 PWY-5851 demethylmenaquinol-9 biosynthesis Thimo_3314 PWY-5852 demethylmenaquinol-8 biosynthesis I Thimo_3314 PWY-5853 demethylmenaquinol-6 biosynthesis I Thimo_3314 PWY-5890 menaquinol-10 biosynthesis Thimo_3314 PWY-5891 menaquinol-11 biosynthesis Thimo_3314 PWY-5892 menaquinol-12 biosynthesis Thimo_3314 PWY-5895 menaquinol-13 biosynthesis Thimo_3315 PWY-5791 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Thimo_3315 PWY-5837 1,4-dihydroxy-2-naphthoate biosynthesis I Thimo_3317 PWY-5941 glycogen degradation II (eukaryotic) Thimo_3317 PWY-6724 starch degradation II Thimo_3317 PWY-6737 starch degradation V Thimo_3317 PWY-7238 sucrose biosynthesis II Thimo_3318 PWY-622 starch biosynthesis Thimo_3319 PWY-5067 glycogen biosynthesis II (from UDP-D-Glucose) Thimo_3319 PWY-622 starch biosynthesis Thimo_3323 PWY-6823 molybdenum cofactor biosynthesis Thimo_3324 PWY-5958 acridone alkaloid biosynthesis Thimo_3324 PWY-6543 4-aminobenzoate biosynthesis Thimo_3324 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Thimo_3324 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Thimo_3324 PWY-6722 candicidin biosynthesis Thimo_3326 PWY-241 C4 photosynthetic carbon assimilation cycle, NADP-ME type Thimo_3326 PWY-6549 L-glutamine biosynthesis III Thimo_3326 PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Thimo_3326 PWY-7117 C4 photosynthetic carbon assimilation cycle, PEPCK type Thimo_3337 PWY-6854 ethylene biosynthesis III (microbes) Thimo_3339 PWY-5532 adenosine nucleotides degradation IV Thimo_3339 PWY-5723 Rubisco shunt Thimo_3363 PWY-6871 3-methylbutanol biosynthesis Thimo_3373 PWY-622 starch biosynthesis Thimo_3374 PWY-1042 glycolysis IV (plant cytosol) Thimo_3374 PWY-2221 Entner-Doudoroff pathway III (semi-phosphorylative) Thimo_3374 PWY-5484 glycolysis II (from fructose 6-phosphate) Thimo_3374 PWY-5723 Rubisco shunt Thimo_3374 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_3374 PWY-6886 1-butanol autotrophic biosynthesis Thimo_3374 PWY-6901 superpathway of glucose and xylose degradation Thimo_3374 PWY-7003 glycerol degradation to butanol Thimo_3374 PWY-7124 ethylene biosynthesis V (engineered) Thimo_3374 PWY-7218 photosynthetic 3-hydroxybutanoate biosynthesis (engineered) Thimo_3375 PWY-3841 folate transformations II Thimo_3375 PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I Thimo_3375 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_3375 PWY-7198 pyrimidine deoxyribonucleotides de novo biosynthesis IV Thimo_3375 PWY-7199 pyrimidine deoxyribonucleosides salvage Thimo_3375 PWY-7210 pyrimidine deoxyribonucleotides biosynthesis from CTP Thimo_3381 PWY-1269 CMP-3-deoxy-D-manno-octulosonate biosynthesis I Thimo_3381 PWY-5111 CMP-3-deoxy-D-manno-octulosonate biosynthesis II (from D-arabinose 5-phosphate) Thimo_3405 PWY-5443 aminopropanol phosphate biosynthesis I Thimo_3407 PWY-5508 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II Thimo_3407 PWY-5509 adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I Thimo_3407 PWY-6269 adenosylcobalamin salvage from cobinamide II Thimo_3422 PWY-3722 glycine betaine biosynthesis II (Gram-positive bacteria) Thimo_3422 PWY-7494 choline degradation IV Thimo_3437 PWY-622 starch biosynthesis Thimo_3440 PWY-2941 L-lysine biosynthesis II Thimo_3440 PWY-2942 L-lysine biosynthesis III Thimo_3440 PWY-5097 L-lysine biosynthesis VI Thimo_3465 PWY-7187 pyrimidine deoxyribonucleotides de novo biosynthesis II Thimo_3465 PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II Thimo_3465 PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II Thimo_3469 PWY-5265 peptidoglycan biosynthesis II (staphylococci) Thimo_3469 PWY-6385 peptidoglycan biosynthesis III (mycobacteria) Thimo_3469 PWY-6470 peptidoglycan biosynthesis V (β-lactam resistance) Thimo_3469 PWY-6471 peptidoglycan biosynthesis IV (Enterococcus faecium) Thimo_3511 PWY-6147 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Thimo_3511 PWY-6148 tetrahydromethanopterin biosynthesis Thimo_3511 PWY-6797 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) Thimo_3511 PWY-7539 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia) Thimo_3512 PWY-6654 phosphopantothenate biosynthesis III Thimo_3514 PWY-5155 β-alanine biosynthesis III Thimo_3515 PWY-622 starch biosynthesis Thimo_3516 PWY-7268 NAD/NADP-NADH/NADPH cytosolic interconversion (yeast) Thimo_3517 PWY-3801 sucrose degradation II (sucrose synthase) Thimo_3517 PWY-5054 sorbitol biosynthesis I Thimo_3517 PWY-5384 sucrose degradation IV (sucrose phosphorylase) Thimo_3517 PWY-5514 UDP-N-acetyl-D-galactosamine biosynthesis II Thimo_3517 PWY-5659 GDP-mannose biosynthesis Thimo_3517 PWY-6142 gluconeogenesis II (Methanobacterium thermoautotrophicum) Thimo_3517 PWY-621 sucrose degradation III (sucrose invertase) Thimo_3517 PWY-622 starch biosynthesis Thimo_3517 PWY-6531 mannitol cycle Thimo_3517 PWY-6981 chitin biosynthesis Thimo_3517 PWY-7238 sucrose biosynthesis II Thimo_3517 PWY-7347 sucrose biosynthesis III Thimo_3517 PWY-7385 1,3-propanediol biosynthesis (engineered) Thimo_3526 PWY-4041 γ-glutamyl cycle Thimo_3550 PWY-5194 siroheme biosynthesis Thimo_3550 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Thimo_3552 PWY-7377 cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) Thimo_3564 PWY-5669 phosphatidylethanolamine biosynthesis I Thimo_3598 PWY-5695 urate biosynthesis/inosine 5'-phosphate degradation Thimo_3598 PWY-6596 adenosine nucleotides degradation I Thimo_3598 PWY-7221 guanosine ribonucleotides de novo biosynthesis Thimo_3599 PWY-7221 guanosine ribonucleotides de novo biosynthesis Thimo_3603 PWY-4261 glycerol degradation I Thimo_3604 PWY-6700 queuosine biosynthesis Thimo_3607 PWY-7181 pyrimidine deoxyribonucleosides degradation Thimo_3614 PWY-5101 L-isoleucine biosynthesis II Thimo_3614 PWY-5103 L-isoleucine biosynthesis III Thimo_3614 PWY-5104 L-isoleucine biosynthesis IV Thimo_3614 PWY-5938 (R)-acetoin biosynthesis I Thimo_3614 PWY-5939 (R)-acetoin biosynthesis II Thimo_3614 PWY-6389 (S)-acetoin biosynthesis Thimo_3614 PWY-7111 pyruvate fermentation to isobutanol (engineered) Thimo_3618 PWY-5531 chlorophyllide a biosynthesis II (anaerobic) Thimo_3618 PWY-7159 chlorophyllide a biosynthesis III (aerobic, light independent) Thimo_3630 PWY-6825 phosphatidylcholine biosynthesis V Thimo_3642 PWY-6163 chorismate biosynthesis from 3-dehydroquinate Thimo_3650 PWY-5958 acridone alkaloid biosynthesis Thimo_3650 PWY-6660 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis Thimo_3650 PWY-6661 4-hydroxy-2(1H)-quinolone biosynthesis Thimo_3651 PWY-181 photorespiration Thimo_3652 PWY-1861 formaldehyde assimilation II (RuMP Cycle) Thimo_3652 PWY-5723 Rubisco shunt Thimo_3666 PWY-5154 L-arginine biosynthesis III (via N-acetyl-L-citrulline) Thimo_3667 PWY-6502 oxidized GTP and dGTP detoxification Thimo_3667 PWY-6893 thiamin diphosphate biosynthesis II (Bacillus) Thimo_3667 PWY-6894 thiamin diphosphate biosynthesis I (E. coli) Thimo_3667 PWY-6897 thiamin salvage II Thimo_3667 PWY-6907 thiamin diphosphate biosynthesis III (Staphylococcus) Thimo_3667 PWY-6908 thiamin diphosphate biosynthesis IV (eukaryotes) Thimo_3667 PWY-7353 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) Thimo_3667 PWY-7357 thiamin formation from pyrithiamine and oxythiamine (yeast) Thimo_3674 PWY-5667 CDP-diacylglycerol biosynthesis I Thimo_3674 PWY-5981 CDP-diacylglycerol biosynthesis III Thimo_3682 PWY-381 nitrate reduction II (assimilatory) Thimo_3682 PWY-5675 nitrate reduction V (assimilatory) Thimo_3682 PWY-6549 L-glutamine biosynthesis III Thimo_3682 PWY-6963 ammonia assimilation cycle I Thimo_3682 PWY-6964 ammonia assimilation cycle II