TMO_0028	PWY-4981	L-proline biosynthesis II (from arginine)
TMO_0028	PWY-4984	urea cycle
TMO_0028	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_0029	PWY-4981	L-proline biosynthesis II (from arginine)
TMO_0029	PWY-4984	urea cycle
TMO_0029	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_0033	PWY-5791	1,4-dihydroxy-2-naphthoate biosynthesis II (plants)
TMO_0033	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
TMO_0081	PWY-5392	reductive TCA cycle II
TMO_0081	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TMO_0081	PWY-5690	TCA cycle II (plants and fungi)
TMO_0081	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_0081	PWY-6728	methylaspartate cycle
TMO_0081	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_0081	PWY-7254	TCA cycle VII (acetate-producers)
TMO_0081	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_0084	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_0084	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TMO_0085	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_0085	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TMO_0095	PWY-6672	<i>cis</i>-genanyl-CoA degradation
TMO_0095	PWY-7118	chitin degradation to ethanol
TMO_0102	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TMO_0102	PWY-5723	Rubisco shunt
TMO_0108	PWY-6823	molybdenum cofactor biosynthesis
TMO_0108	PWY-6891	thiazole biosynthesis II (Bacillus)
TMO_0108	PWY-6892	thiazole biosynthesis I (E. coli)
TMO_0108	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
TMO_0118	PWY-5743	3-hydroxypropanoate cycle
TMO_0118	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_0118	PWY-6728	methylaspartate cycle
TMO_0118	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_0122	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TMO_0122	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TMO_0122	PWY-6268	adenosylcobalamin salvage from cobalamin
TMO_0122	PWY-6269	adenosylcobalamin salvage from cobinamide II
TMO_0125	PWY-1361	benzoyl-CoA degradation I (aerobic)
TMO_0125	PWY-5109	2-methylbutanoate biosynthesis
TMO_0125	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TMO_0125	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TMO_0125	PWY-5177	glutaryl-CoA degradation
TMO_0125	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_0125	PWY-6435	4-hydroxybenzoate biosynthesis V
TMO_0125	PWY-6583	pyruvate fermentation to butanol I
TMO_0125	PWY-6863	pyruvate fermentation to hexanol
TMO_0125	PWY-6883	pyruvate fermentation to butanol II
TMO_0125	PWY-6944	androstenedione degradation
TMO_0125	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TMO_0125	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TMO_0125	PWY-7007	methyl ketone biosynthesis
TMO_0125	PWY-7046	4-coumarate degradation (anaerobic)
TMO_0125	PWY-7094	fatty acid salvage
TMO_0125	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_0125	PWY-735	jasmonic acid biosynthesis
TMO_0125	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TMO_0127	PWY-4983	L-citrulline-nitric oxide cycle
TMO_0127	PWY-4984	urea cycle
TMO_0127	PWY-5	canavanine biosynthesis
TMO_0127	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_0127	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_0128	PWY-2941	L-lysine biosynthesis II
TMO_0128	PWY-2942	L-lysine biosynthesis III
TMO_0128	PWY-5097	L-lysine biosynthesis VI
TMO_0129	PWY-6599	guanine and guanosine salvage II
TMO_0129	PWY-6609	adenine and adenosine salvage III
TMO_0129	PWY-6610	adenine and adenosine salvage IV
TMO_0129	PWY-6620	guanine and guanosine salvage
TMO_0141	PWY-3461	L-tyrosine biosynthesis II
TMO_0141	PWY-3462	L-phenylalanine biosynthesis II
TMO_0141	PWY-6120	L-tyrosine biosynthesis III
TMO_0141	PWY-6627	salinosporamide A biosynthesis
TMO_0142	PWY-5344	L-homocysteine biosynthesis
TMO_0149	PWY-5386	methylglyoxal degradation I
TMO_0153	PWY-5676	acetyl-CoA fermentation to butanoate II
TMO_0153	PWY-5741	ethylmalonyl-CoA pathway
TMO_0153	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_0168	PWY-2941	L-lysine biosynthesis II
TMO_0168	PWY-5097	L-lysine biosynthesis VI
TMO_0170	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TMO_0205	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_0205	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_0205	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TMO_0205	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_0216	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_0255	PWY-5506	methanol oxidation to formaldehyde IV
TMO_0291	PWY-381	nitrate reduction II (assimilatory)
TMO_0291	PWY-5675	nitrate reduction V (assimilatory)
TMO_0291	PWY-6549	L-glutamine biosynthesis III
TMO_0291	PWY-6963	ammonia assimilation cycle I
TMO_0291	PWY-6964	ammonia assimilation cycle II
TMO_0297	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_0299	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TMO_0299	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TMO_0301	PWY-3341	L-proline biosynthesis III
TMO_0301	PWY-4981	L-proline biosynthesis II (from arginine)
TMO_0301	PWY-6344	L-ornithine degradation II (Stickland reaction)
TMO_0311	PWY-6610	adenine and adenosine salvage IV
TMO_0335	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
TMO_0336	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
TMO_0344	PWY-6164	3-dehydroquinate biosynthesis I
TMO_0345	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TMO_0351	PWY-4381	fatty acid biosynthesis initiation I
TMO_0351	PWY-5743	3-hydroxypropanoate cycle
TMO_0351	PWY-5744	glyoxylate assimilation
TMO_0351	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_0351	PWY-6679	jadomycin biosynthesis
TMO_0351	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_0355	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_0356	PWY-6502	oxidized GTP and dGTP detoxification
TMO_0374	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
TMO_0374	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
TMO_0374	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
TMO_0374	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
TMO_0374	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
TMO_0374	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
TMO_0374	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
TMO_0374	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
TMO_0374	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TMO_0374	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
TMO_0375	PWY-2941	L-lysine biosynthesis II
TMO_0375	PWY-2942	L-lysine biosynthesis III
TMO_0375	PWY-5097	L-lysine biosynthesis VI
TMO_0375	PWY-6559	spermidine biosynthesis II
TMO_0375	PWY-6562	norspermidine biosynthesis
TMO_0375	PWY-7153	grixazone biosynthesis
TMO_0378	PWY-7560	methylerythritol phosphate pathway II
TMO_0414	PWY-1622	formaldehyde assimilation I (serine pathway)
TMO_0414	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_0414	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_0414	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_0414	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
TMO_0414	PWY-6549	L-glutamine biosynthesis III
TMO_0414	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TMO_0414	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_0414	PWY-7124	ethylene biosynthesis V (engineered)
TMO_0422	PWY-7310	D-glucosaminate degradation
TMO_0426	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TMO_0428	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
TMO_0443	PWY-4261	glycerol degradation I
TMO_0443	PWY-6118	glycerol-3-phosphate shuttle
TMO_0443	PWY-6952	glycerophosphodiester degradation
TMO_0444	PWY-4261	glycerol degradation I
TMO_0453	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_0453	PWY-581	indole-3-acetate biosynthesis II
TMO_0453	PWY-7308	acrylonitrile degradation I
TMO_0454	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_0454	PWY-581	indole-3-acetate biosynthesis II
TMO_0454	PWY-7308	acrylonitrile degradation I
TMO_0455	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_0455	PWY-581	indole-3-acetate biosynthesis II
TMO_0455	PWY-7308	acrylonitrile degradation I
TMO_0481	PWY-6167	flavin biosynthesis II (archaea)
TMO_0481	PWY-6168	flavin biosynthesis III (fungi)
TMO_0518	PWY-101	photosynthesis light reactions
TMO_0518	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
TMO_0526	PWY-5663	tetrahydrobiopterin biosynthesis I
TMO_0526	PWY-5664	tetrahydrobiopterin biosynthesis II
TMO_0526	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TMO_0526	PWY-6703	preQ<sub>0</sub> biosynthesis
TMO_0526	PWY-6983	tetrahydrobiopterin biosynthesis III
TMO_0526	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TMO_0529	PWY-5686	UMP biosynthesis
TMO_0539	PWY-5958	acridone alkaloid biosynthesis
TMO_0539	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TMO_0539	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TMO_0570	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_0577	PWY-3801	sucrose degradation II (sucrose synthase)
TMO_0577	PWY-6527	stachyose degradation
TMO_0577	PWY-6981	chitin biosynthesis
TMO_0577	PWY-7238	sucrose biosynthesis II
TMO_0577	PWY-7343	UDP-glucose biosynthesis
TMO_0578	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
TMO_0579	PWY-6749	CMP-legionaminate biosynthesis I
TMO_0608	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
TMO_0608	PWY-6853	ethylene biosynthesis II (microbes)
TMO_0608	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
TMO_0628	PWY-1361	benzoyl-CoA degradation I (aerobic)
TMO_0628	PWY-5109	2-methylbutanoate biosynthesis
TMO_0628	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TMO_0628	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TMO_0628	PWY-5177	glutaryl-CoA degradation
TMO_0628	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_0628	PWY-6435	4-hydroxybenzoate biosynthesis V
TMO_0628	PWY-6583	pyruvate fermentation to butanol I
TMO_0628	PWY-6863	pyruvate fermentation to hexanol
TMO_0628	PWY-6883	pyruvate fermentation to butanol II
TMO_0628	PWY-6944	androstenedione degradation
TMO_0628	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TMO_0628	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TMO_0628	PWY-7007	methyl ketone biosynthesis
TMO_0628	PWY-7046	4-coumarate degradation (anaerobic)
TMO_0628	PWY-7094	fatty acid salvage
TMO_0628	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_0628	PWY-735	jasmonic acid biosynthesis
TMO_0628	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TMO_0632	PWY-1361	benzoyl-CoA degradation I (aerobic)
TMO_0632	PWY-5109	2-methylbutanoate biosynthesis
TMO_0632	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TMO_0632	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TMO_0632	PWY-5177	glutaryl-CoA degradation
TMO_0632	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_0632	PWY-6435	4-hydroxybenzoate biosynthesis V
TMO_0632	PWY-6583	pyruvate fermentation to butanol I
TMO_0632	PWY-6863	pyruvate fermentation to hexanol
TMO_0632	PWY-6883	pyruvate fermentation to butanol II
TMO_0632	PWY-6944	androstenedione degradation
TMO_0632	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TMO_0632	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TMO_0632	PWY-7007	methyl ketone biosynthesis
TMO_0632	PWY-7046	4-coumarate degradation (anaerobic)
TMO_0632	PWY-7094	fatty acid salvage
TMO_0632	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_0632	PWY-735	jasmonic acid biosynthesis
TMO_0632	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TMO_0640	PWY-5381	pyridine nucleotide cycling (plants)
TMO_0640	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TMO_0640	PWY-6596	adenosine nucleotides degradation I
TMO_0640	PWY-6606	guanosine nucleotides degradation II
TMO_0640	PWY-6607	guanosine nucleotides degradation I
TMO_0640	PWY-6608	guanosine nucleotides degradation III
TMO_0640	PWY-7185	UTP and CTP dephosphorylation I
TMO_0657	PWY-6134	L-tyrosine biosynthesis IV
TMO_0657	PWY-7158	L-phenylalanine degradation V
TMO_0668	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_0668	PWY-581	indole-3-acetate biosynthesis II
TMO_0668	PWY-7308	acrylonitrile degradation I
TMO_0688	PWY-5340	sulfate activation for sulfonation
TMO_0706	PWY-3221	dTDP-L-rhamnose biosynthesis II
TMO_0706	PWY-6808	dTDP-D-forosamine biosynthesis
TMO_0706	PWY-6942	dTDP-D-desosamine biosynthesis
TMO_0706	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TMO_0706	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TMO_0706	PWY-6974	dTDP-L-olivose biosynthesis
TMO_0706	PWY-6976	dTDP-L-mycarose biosynthesis
TMO_0706	PWY-7104	dTDP-L-megosamine biosynthesis
TMO_0706	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TMO_0706	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TMO_0706	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TMO_0706	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TMO_0706	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TMO_0706	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TMO_0706	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TMO_0706	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TMO_0713	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
TMO_0713	PWY-5940	streptomycin biosynthesis
TMO_0715	PWY-5659	GDP-mannose biosynthesis
TMO_0715	PWY-6073	alginate biosynthesis I (algal)
TMO_0715	PWY-6082	alginate biosynthesis II (bacterial)
TMO_0715	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
TMO_0760	PWY-6871	3-methylbutanol biosynthesis
TMO_0767	PWY-3561	choline biosynthesis III
TMO_0767	PWY-7039	phosphatidate metabolism, as a signaling molecule
TMO_0825	PWY-2201	folate transformations I
TMO_0825	PWY-3841	folate transformations II
TMO_0826	PWY-2201	folate transformations I
TMO_0826	PWY-3841	folate transformations II
TMO_0837	PWY-6123	inosine-5'-phosphate biosynthesis I
TMO_0837	PWY-7234	inosine-5'-phosphate biosynthesis III
TMO_0840	PWY-723	alkylnitronates degradation
TMO_0855	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TMO_0855	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TMO_0878	PWY-2301	<i>myo</i>-inositol biosynthesis
TMO_0878	PWY-4702	phytate degradation I
TMO_0878	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
TMO_0880	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TMO_0880	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TMO_0880	PWY-6897	thiamin salvage II
TMO_0880	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TMO_0880	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TMO_0880	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TMO_0880	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TMO_0883	PWY-1042	glycolysis IV (plant cytosol)
TMO_0883	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_0883	PWY-6886	1-butanol autotrophic biosynthesis
TMO_0883	PWY-6901	superpathway of glucose and xylose degradation
TMO_0883	PWY-7003	glycerol degradation to butanol
TMO_0884	PWY-1042	glycolysis IV (plant cytosol)
TMO_0884	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_0884	PWY-6901	superpathway of glucose and xylose degradation
TMO_0884	PWY-7003	glycerol degradation to butanol
TMO_0886	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TMO_0886	PWY-5723	Rubisco shunt
TMO_0886	PWY-6891	thiazole biosynthesis II (Bacillus)
TMO_0886	PWY-6892	thiazole biosynthesis I (E. coli)
TMO_0886	PWY-6901	superpathway of glucose and xylose degradation
TMO_0886	PWY-7560	methylerythritol phosphate pathway II
TMO_0888	PWY-5392	reductive TCA cycle II
TMO_0888	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TMO_0888	PWY-5690	TCA cycle II (plants and fungi)
TMO_0888	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_0888	PWY-6728	methylaspartate cycle
TMO_0888	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_0888	PWY-7254	TCA cycle VII (acetate-producers)
TMO_0888	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_0890	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TMO_0890	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TMO_0902	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_0912	PWY-6614	tetrahydrofolate biosynthesis
TMO_0913	PWY-6749	CMP-legionaminate biosynthesis I
TMO_0915	PWY-6910	hydroxymethylpyrimidine salvage
TMO_0915	PWY-7356	thiamin salvage IV (yeast)
TMO_0915	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TMO_0921	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_0943	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_0943	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_0966	PWY-6891	thiazole biosynthesis II (Bacillus)
TMO_0966	PWY-6892	thiazole biosynthesis I (E. coli)
TMO_0966	PWY-7560	methylerythritol phosphate pathway II
TMO_0983	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TMO_0984	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TMO_0984	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TMO_0984	PWY-5989	stearate biosynthesis II (bacteria and plants)
TMO_0984	PWY-6113	superpathway of mycolate biosynthesis
TMO_0984	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TMO_0984	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TMO_0984	PWY-7096	triclosan resistance
TMO_0984	PWYG-321	mycolate biosynthesis
TMO_0988	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TMO_0988	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TMO_0990	PWY-6605	adenine and adenosine salvage II
TMO_0990	PWY-6610	adenine and adenosine salvage IV
TMO_0999	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_1000	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TMO_1000	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TMO_1016	PWY-5344	L-homocysteine biosynthesis
TMO_1016	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TMO_1017	PWY-6871	3-methylbutanol biosynthesis
TMO_1021	PWY-1881	formate oxidation to CO<sub>2</sub>
TMO_1021	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_1021	PWY-6696	oxalate degradation III
TMO_1072	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TMO_1072	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TMO_1082	PWY-6788	cellulose degradation II (fungi)
TMO_1084	PWY-1001	cellulose biosynthesis
TMO_1135	PWY-1361	benzoyl-CoA degradation I (aerobic)
TMO_1135	PWY-5109	2-methylbutanoate biosynthesis
TMO_1135	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TMO_1135	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TMO_1135	PWY-5177	glutaryl-CoA degradation
TMO_1135	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_1135	PWY-6435	4-hydroxybenzoate biosynthesis V
TMO_1135	PWY-6583	pyruvate fermentation to butanol I
TMO_1135	PWY-6863	pyruvate fermentation to hexanol
TMO_1135	PWY-6883	pyruvate fermentation to butanol II
TMO_1135	PWY-6944	androstenedione degradation
TMO_1135	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TMO_1135	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TMO_1135	PWY-7007	methyl ketone biosynthesis
TMO_1135	PWY-7046	4-coumarate degradation (anaerobic)
TMO_1135	PWY-7094	fatty acid salvage
TMO_1135	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_1135	PWY-735	jasmonic acid biosynthesis
TMO_1135	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TMO_1136	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_1136	PWY-6549	L-glutamine biosynthesis III
TMO_1136	PWY-6728	methylaspartate cycle
TMO_1136	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_1136	PWY-7124	ethylene biosynthesis V (engineered)
TMO_1136	PWY-7254	TCA cycle VII (acetate-producers)
TMO_1136	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TMO_1166	PWY-3221	dTDP-L-rhamnose biosynthesis II
TMO_1166	PWY-6808	dTDP-D-forosamine biosynthesis
TMO_1166	PWY-6942	dTDP-D-desosamine biosynthesis
TMO_1166	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
TMO_1166	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
TMO_1166	PWY-6974	dTDP-L-olivose biosynthesis
TMO_1166	PWY-6976	dTDP-L-mycarose biosynthesis
TMO_1166	PWY-7104	dTDP-L-megosamine biosynthesis
TMO_1166	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
TMO_1166	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
TMO_1166	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
TMO_1166	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
TMO_1166	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
TMO_1166	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
TMO_1166	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
TMO_1166	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
TMO_1168	PWY-5839	menaquinol-7 biosynthesis
TMO_1168	PWY-5844	menaquinol-9 biosynthesis
TMO_1168	PWY-5849	menaquinol-6 biosynthesis
TMO_1168	PWY-5890	menaquinol-10 biosynthesis
TMO_1168	PWY-5891	menaquinol-11 biosynthesis
TMO_1168	PWY-5892	menaquinol-12 biosynthesis
TMO_1168	PWY-5895	menaquinol-13 biosynthesis
TMO_1197	PWY-5169	cyanurate degradation
TMO_1197	PWY-5703	urea degradation I
TMO_1197	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_1199	PWY-5964	guanylyl molybdenum cofactor biosynthesis
TMO_1218	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TMO_1218	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
TMO_1218	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
TMO_1219	PWY-6823	molybdenum cofactor biosynthesis
TMO_1229	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1258	PWY-5958	acridone alkaloid biosynthesis
TMO_1258	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TMO_1258	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TMO_1276	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_1293	PWY-4261	glycerol degradation I
TMO_1293	PWY-6118	glycerol-3-phosphate shuttle
TMO_1293	PWY-6952	glycerophosphodiester degradation
TMO_1295	PWY-4261	glycerol degradation I
TMO_1348	PWY-2723	trehalose degradation V
TMO_1348	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TMO_1348	PWY-5661	GDP-glucose biosynthesis
TMO_1348	PWY-7238	sucrose biosynthesis II
TMO_1348	PWY-7385	1,3-propanediol biosynthesis (engineered)
TMO_1349	PWY-43	putrescine biosynthesis II
TMO_1356	PWY-5443	aminopropanol phosphate biosynthesis I
TMO_1364	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_1373	PWY-5642	2,4-dinitrotoluene degradation
TMO_1373	PWY-6373	acrylate degradation
TMO_1412	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_1438	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TMO_1438	PWY-6596	adenosine nucleotides degradation I
TMO_1438	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1445	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1463	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TMO_1463	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TMO_1463	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TMO_1463	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TMO_1479	PWY-3781	aerobic respiration I (cytochrome c)
TMO_1479	PWY-4521	arsenite oxidation I (respiratory)
TMO_1479	PWY-6692	Fe(II) oxidation
TMO_1479	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_1503	PWY-3162	L-tryptophan degradation V (side chain pathway)
TMO_1503	PWY-5057	L-valine degradation II
TMO_1503	PWY-5076	L-leucine degradation III
TMO_1503	PWY-5078	L-isoleucine degradation II
TMO_1503	PWY-5079	L-phenylalanine degradation III
TMO_1503	PWY-5082	L-methionine degradation III
TMO_1503	PWY-5480	pyruvate fermentation to ethanol I
TMO_1503	PWY-5486	pyruvate fermentation to ethanol II
TMO_1503	PWY-5751	phenylethanol biosynthesis
TMO_1503	PWY-6028	acetoin degradation
TMO_1503	PWY-6313	serotonin degradation
TMO_1503	PWY-6333	acetaldehyde biosynthesis I
TMO_1503	PWY-6342	noradrenaline and adrenaline degradation
TMO_1503	PWY-6587	pyruvate fermentation to ethanol III
TMO_1503	PWY-6802	salidroside biosynthesis
TMO_1503	PWY-6871	3-methylbutanol biosynthesis
TMO_1503	PWY-7013	L-1,2-propanediol degradation
TMO_1503	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TMO_1503	PWY-7118	chitin degradation to ethanol
TMO_1503	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TMO_1503	PWY-7557	dehydrodiconiferyl alcohol degradation
TMO_1504	PWY-5101	L-isoleucine biosynthesis II
TMO_1504	PWY-5103	L-isoleucine biosynthesis III
TMO_1504	PWY-5104	L-isoleucine biosynthesis IV
TMO_1504	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TMO_1518	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_1518	PWY-581	indole-3-acetate biosynthesis II
TMO_1518	PWY-7308	acrylonitrile degradation I
TMO_1519	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_1519	PWY-581	indole-3-acetate biosynthesis II
TMO_1519	PWY-7308	acrylonitrile degradation I
TMO_1539	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
TMO_1540	PWY-5381	pyridine nucleotide cycling (plants)
TMO_1540	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
TMO_1540	PWY-6596	adenosine nucleotides degradation I
TMO_1540	PWY-6606	guanosine nucleotides degradation II
TMO_1540	PWY-6607	guanosine nucleotides degradation I
TMO_1540	PWY-6608	guanosine nucleotides degradation III
TMO_1540	PWY-7185	UTP and CTP dephosphorylation I
TMO_1550	PWY-6854	ethylene biosynthesis III (microbes)
TMO_1572	PWY-6700	queuosine biosynthesis
TMO_1573	PWY-6700	queuosine biosynthesis
TMO_1582	PWY-7425	2-chloroacrylate degradation I
TMO_1584	PWY-2941	L-lysine biosynthesis II
TMO_1584	PWY-2942	L-lysine biosynthesis III
TMO_1584	PWY-5097	L-lysine biosynthesis VI
TMO_1589	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TMO_1589	PWY-6148	tetrahydromethanopterin biosynthesis
TMO_1589	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
TMO_1589	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TMO_1592	PWY-5686	UMP biosynthesis
TMO_1594	PWY-6012	acyl carrier protein metabolism I
TMO_1594	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
TMO_1616	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_1616	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TMO_1620	PWY-6834	spermidine biosynthesis III
TMO_1649	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1656	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1662	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_1662	PWY-6549	L-glutamine biosynthesis III
TMO_1662	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TMO_1662	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_1676	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TMO_1676	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TMO_1677	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_1677	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_1677	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_1677	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TMO_1677	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TMO_1677	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TMO_1707	PWY-7560	methylerythritol phosphate pathway II
TMO_1708	PWY-5269	cardiolipin biosynthesis II
TMO_1708	PWY-5668	cardiolipin biosynthesis I
TMO_1713	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TMO_1713	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TMO_1713	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
TMO_1714	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TMO_1714	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TMO_1728	PWY-5704	urea degradation II
TMO_1729	PWY-5704	urea degradation II
TMO_1730	PWY-5704	urea degradation II
TMO_1739	PWY-6655	xanthan biosynthesis
TMO_1739	PWY-6658	acetan biosynthesis
TMO_1746	PWY-1042	glycolysis IV (plant cytosol)
TMO_1746	PWY-1622	formaldehyde assimilation I (serine pathway)
TMO_1746	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TMO_1746	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_1746	PWY-5723	Rubisco shunt
TMO_1746	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_1746	PWY-6886	1-butanol autotrophic biosynthesis
TMO_1746	PWY-6901	superpathway of glucose and xylose degradation
TMO_1746	PWY-7003	glycerol degradation to butanol
TMO_1746	PWY-7124	ethylene biosynthesis V (engineered)
TMO_1746	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TMO_1747	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TMO_1747	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TMO_1748	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TMO_1748	PWY-7177	UTP and CTP dephosphorylation II
TMO_1748	PWY-7185	UTP and CTP dephosphorylation I
TMO_1750	PWY-1042	glycolysis IV (plant cytosol)
TMO_1750	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_1750	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_1750	PWY-7003	glycerol degradation to butanol
TMO_1752	PWY-5958	acridone alkaloid biosynthesis
TMO_1752	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TMO_1752	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TMO_1758	PWY-5958	acridone alkaloid biosynthesis
TMO_1758	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
TMO_1758	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
TMO_1762	PWY-6823	molybdenum cofactor biosynthesis
TMO_1765	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_1771	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TMO_1771	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TMO_1771	PWY-5989	stearate biosynthesis II (bacteria and plants)
TMO_1771	PWY-5994	palmitate biosynthesis I (animals and fungi)
TMO_1771	PWY-6113	superpathway of mycolate biosynthesis
TMO_1771	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TMO_1771	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TMO_1771	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_1771	PWYG-321	mycolate biosynthesis
TMO_1776	PWY-7560	methylerythritol phosphate pathway II
TMO_1787	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_1793	PWY-5344	L-homocysteine biosynthesis
TMO_1793	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
TMO_1801	PWY-7533	gliotoxin biosynthesis
TMO_1810	PWY-4381	fatty acid biosynthesis initiation I
TMO_1818	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TMO_1818	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TMO_1818	PWY-6896	thiamin salvage I
TMO_1818	PWY-6897	thiamin salvage II
TMO_1820	PWY-6167	flavin biosynthesis II (archaea)
TMO_1820	PWY-6168	flavin biosynthesis III (fungi)
TMO_1821	PWY-6167	flavin biosynthesis II (archaea)
TMO_1821	PWY-6168	flavin biosynthesis III (fungi)
TMO_1821	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TMO_1822	PWY-6167	flavin biosynthesis II (archaea)
TMO_1822	PWY-6168	flavin biosynthesis III (fungi)
TMO_1822	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1825	PWY-1622	formaldehyde assimilation I (serine pathway)
TMO_1825	PWY-181	photorespiration
TMO_1825	PWY-2161	folate polyglutamylation
TMO_1825	PWY-2201	folate transformations I
TMO_1825	PWY-3661	glycine betaine degradation I
TMO_1825	PWY-3661-1	glycine betaine degradation II (mammalian)
TMO_1825	PWY-3841	folate transformations II
TMO_1825	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_1832	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
TMO_1832	PWY-581	indole-3-acetate biosynthesis II
TMO_1832	PWY-7308	acrylonitrile degradation I
TMO_1838	PWY-5269	cardiolipin biosynthesis II
TMO_1838	PWY-5668	cardiolipin biosynthesis I
TMO_1840	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_1840	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_1840	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_1841	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_1841	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TMO_1842	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_1842	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
TMO_1842	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_1842	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_1842	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
TMO_1842	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TMO_1842	PWY-7205	CMP phosphorylation
TMO_1842	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TMO_1842	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_1842	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1842	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_1842	PWY-7224	purine deoxyribonucleosides salvage
TMO_1842	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_1842	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TMO_1846	PWY-5988	wound-induced proteolysis I
TMO_1846	PWY-6018	seed germination protein turnover
TMO_1854	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
TMO_1865	PWY-5367	petroselinate biosynthesis
TMO_1865	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TMO_1865	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TMO_1865	PWY-5989	stearate biosynthesis II (bacteria and plants)
TMO_1865	PWY-5994	palmitate biosynthesis I (animals and fungi)
TMO_1865	PWY-6113	superpathway of mycolate biosynthesis
TMO_1865	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TMO_1865	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TMO_1865	PWY-6951	TMO_1865
TMO_1865	PWY-7053	docosahexaenoate biosynthesis I (lower eukaryotes)
TMO_1865	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_1865	PWYG-321	mycolate biosynthesis
TMO_1866	PWY-4381	fatty acid biosynthesis initiation I
TMO_1866	PWY-6799	fatty acid biosynthesis (plant mitochondria)
TMO_1866	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_1874	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_1879	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_1879	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_1879	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_1879	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TMO_1896	PWY-1042	glycolysis IV (plant cytosol)
TMO_1896	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TMO_1896	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_1896	PWY-5723	Rubisco shunt
TMO_1896	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_1896	PWY-6886	1-butanol autotrophic biosynthesis
TMO_1896	PWY-6901	superpathway of glucose and xylose degradation
TMO_1896	PWY-7003	glycerol degradation to butanol
TMO_1896	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TMO_1896	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_1901	PWY-5316	nicotine biosynthesis
TMO_1901	PWY-7342	superpathway of nicotine biosynthesis
TMO_1903	PWY-5316	nicotine biosynthesis
TMO_1903	PWY-5381	pyridine nucleotide cycling (plants)
TMO_1903	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TMO_1903	PWY-7342	superpathway of nicotine biosynthesis
TMO_1942	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_1961	PWY-5743	3-hydroxypropanoate cycle
TMO_1961	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_1961	PWY-6728	methylaspartate cycle
TMO_1961	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_1963	PWY-3961	phosphopantothenate biosynthesis II
TMO_1964	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TMO_1964	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TMO_1966	PWY-3781	aerobic respiration I (cytochrome c)
TMO_1966	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TMO_1966	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
TMO_1966	PWY-6692	Fe(II) oxidation
TMO_1988	PWY-6938	NADH repair
TMO_1993	PWY-381	nitrate reduction II (assimilatory)
TMO_1993	PWY-5675	nitrate reduction V (assimilatory)
TMO_1993	PWY-6549	L-glutamine biosynthesis III
TMO_1993	PWY-6963	ammonia assimilation cycle I
TMO_1993	PWY-6964	ammonia assimilation cycle II
TMO_2031	PWY-6167	flavin biosynthesis II (archaea)
TMO_2035	PWY-6167	flavin biosynthesis II (archaea)
TMO_2035	PWY-6168	flavin biosynthesis III (fungi)
TMO_2035	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TMO_2051	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
TMO_2051	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
TMO_2085	PWY-1361	benzoyl-CoA degradation I (aerobic)
TMO_2085	PWY-5109	2-methylbutanoate biosynthesis
TMO_2085	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
TMO_2085	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
TMO_2085	PWY-5177	glutaryl-CoA degradation
TMO_2085	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_2085	PWY-6435	4-hydroxybenzoate biosynthesis V
TMO_2085	PWY-6583	pyruvate fermentation to butanol I
TMO_2085	PWY-6863	pyruvate fermentation to hexanol
TMO_2085	PWY-6883	pyruvate fermentation to butanol II
TMO_2085	PWY-6944	androstenedione degradation
TMO_2085	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
TMO_2085	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
TMO_2085	PWY-7007	methyl ketone biosynthesis
TMO_2085	PWY-7046	4-coumarate degradation (anaerobic)
TMO_2085	PWY-7094	fatty acid salvage
TMO_2085	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
TMO_2085	PWY-735	jasmonic acid biosynthesis
TMO_2085	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
TMO_2093	PWY-5532	adenosine nucleotides degradation IV
TMO_2095	PWY-5532	adenosine nucleotides degradation IV
TMO_2096	PWY-7399	methylphosphonate degradation II
TMO_2097	PWY-7399	methylphosphonate degradation II
TMO_2099	PWY-7399	methylphosphonate degradation II
TMO_2102	PWY-7399	methylphosphonate degradation II
TMO_2130	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
TMO_2130	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
TMO_2148	PWY-6683	sulfate reduction III (assimilatory)
TMO_2152	PWY-5194	siroheme biosynthesis
TMO_2152	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2252	PWY-6123	inosine-5'-phosphate biosynthesis I
TMO_2252	PWY-6124	inosine-5'-phosphate biosynthesis II
TMO_2252	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_2252	PWY-7234	inosine-5'-phosphate biosynthesis III
TMO_2256	PWY-5971	palmitate biosynthesis II (bacteria and plants)
TMO_2256	PWY-5973	<i>cis</i>-vaccenate biosynthesis
TMO_2256	PWY-5989	stearate biosynthesis II (bacteria and plants)
TMO_2256	PWY-6113	superpathway of mycolate biosynthesis
TMO_2256	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
TMO_2256	PWY-6519	8-amino-7-oxononanoate biosynthesis I
TMO_2256	PWY-7096	triclosan resistance
TMO_2256	PWYG-321	mycolate biosynthesis
TMO_2257	PWY-6123	inosine-5'-phosphate biosynthesis I
TMO_2257	PWY-6124	inosine-5'-phosphate biosynthesis II
TMO_2257	PWY-7234	inosine-5'-phosphate biosynthesis III
TMO_2258	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_2258	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_2258	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_2259	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_2259	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_2259	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_2260	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_2260	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_2260	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_2272	PWY-6936	seleno-amino acid biosynthesis
TMO_2279	PWY-3781	aerobic respiration I (cytochrome c)
TMO_2279	PWY-4521	arsenite oxidation I (respiratory)
TMO_2279	PWY-6692	Fe(II) oxidation
TMO_2279	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_2280	PWY-3781	aerobic respiration I (cytochrome c)
TMO_2280	PWY-4521	arsenite oxidation I (respiratory)
TMO_2280	PWY-6692	Fe(II) oxidation
TMO_2280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_2294	PWY-5101	L-isoleucine biosynthesis II
TMO_2294	PWY-6871	3-methylbutanol biosynthesis
TMO_2298	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_2299	PWY-5381	pyridine nucleotide cycling (plants)
TMO_2299	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TMO_2300	PWY-5381	pyridine nucleotide cycling (plants)
TMO_2301	PWY-6164	3-dehydroquinate biosynthesis I
TMO_2302	PWY-4081	glutathione redox reactions I
TMO_2313	PWY-6749	CMP-legionaminate biosynthesis I
TMO_2335	PWY-5194	siroheme biosynthesis
TMO_2335	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2344	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TMO_2344	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TMO_2346	PWY-5028	L-histidine degradation II
TMO_2346	PWY-5030	L-histidine degradation III
TMO_2348	PWY-5028	L-histidine degradation II
TMO_2348	PWY-5030	L-histidine degradation III
TMO_2409	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_2409	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2409	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TMO_2409	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TMO_2409	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2409	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2409	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2409	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TMO_2410	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_2410	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2410	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TMO_2410	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TMO_2410	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2410	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2410	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2410	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TMO_2411	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_2411	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2411	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
TMO_2411	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
TMO_2411	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2411	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_2411	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_2411	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
TMO_2415	PWY-5747	2-methylcitrate cycle II
TMO_2416	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TMO_2416	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
TMO_2416	PWY-6936	seleno-amino acid biosynthesis
TMO_2416	PWY-702	L-methionine biosynthesis II
TMO_2431	PWY-6215	4-chlorobenzoate degradation
TMO_2448	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_2515	PWY-6936	seleno-amino acid biosynthesis
TMO_2541	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TMO_2546	PWY-5686	UMP biosynthesis
TMO_2547	PWY-5686	UMP biosynthesis
TMO_2565	PWY-43	putrescine biosynthesis II
TMO_2567	PWY-43	putrescine biosynthesis II
TMO_2568	PWY-5482	pyruvate fermentation to acetate II
TMO_2568	PWY-5485	pyruvate fermentation to acetate IV
TMO_2568	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_2569	PWY-1281	sulfoacetaldehyde degradation I
TMO_2569	PWY-5482	pyruvate fermentation to acetate II
TMO_2569	PWY-5485	pyruvate fermentation to acetate IV
TMO_2569	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_2569	PWY-6637	sulfolactate degradation II
TMO_2573	PWY-5074	mevalonate degradation
TMO_2575	PWY-4381	fatty acid biosynthesis initiation I
TMO_2575	PWY-5743	3-hydroxypropanoate cycle
TMO_2575	PWY-5744	glyoxylate assimilation
TMO_2575	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_2575	PWY-6679	jadomycin biosynthesis
TMO_2575	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_2592	PWY-1281	sulfoacetaldehyde degradation I
TMO_2592	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_2592	PWY-5482	pyruvate fermentation to acetate II
TMO_2592	PWY-5485	pyruvate fermentation to acetate IV
TMO_2592	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_2592	PWY-6637	sulfolactate degradation II
TMO_2592	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_2593	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
TMO_2593	PWY-7381	lipoate biosynthesis and incorporation (glycine cleavage system, yeast)
TMO_2597	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
TMO_2597	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
TMO_2600	PWY-4381	fatty acid biosynthesis initiation I
TMO_2600	PWY-5743	3-hydroxypropanoate cycle
TMO_2600	PWY-5744	glyoxylate assimilation
TMO_2600	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_2600	PWY-6679	jadomycin biosynthesis
TMO_2600	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_2611	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_2685	PWY-5381	pyridine nucleotide cycling (plants)
TMO_2694	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
TMO_2694	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
TMO_2694	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
TMO_2694	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
TMO_2710	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_2710	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_2743	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
TMO_2758	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TMO_2758	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TMO_2758	PWY-6268	adenosylcobalamin salvage from cobalamin
TMO_2758	PWY-6269	adenosylcobalamin salvage from cobinamide II
TMO_2762	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2768	PWY-5194	siroheme biosynthesis
TMO_2768	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2769	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2772	PWY-5194	siroheme biosynthesis
TMO_2772	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2773	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2774	PWY-5194	siroheme biosynthesis
TMO_2774	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2775	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2777	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
TMO_2785	PWY-6840	homoglutathione biosynthesis
TMO_2785	PWY-7255	ergothioneine biosynthesis I (bacteria)
TMO_2793	PWY-7560	methylerythritol phosphate pathway II
TMO_2794	PWY-702	L-methionine biosynthesis II
TMO_2796	PWY-7183	pyrimidine nucleobases salvage I
TMO_2813	PWY-3781	aerobic respiration I (cytochrome c)
TMO_2813	PWY-4521	arsenite oxidation I (respiratory)
TMO_2813	PWY-6692	Fe(II) oxidation
TMO_2813	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_2838	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
TMO_2874	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
TMO_2874	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
TMO_2874	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
TMO_2886	PWY-3801	sucrose degradation II (sucrose synthase)
TMO_2886	PWY-5054	sorbitol biosynthesis I
TMO_2886	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
TMO_2886	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
TMO_2886	PWY-5659	GDP-mannose biosynthesis
TMO_2886	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_2886	PWY-621	sucrose degradation III (sucrose invertase)
TMO_2886	PWY-622	starch biosynthesis
TMO_2886	PWY-6531	mannitol cycle
TMO_2886	PWY-6981	chitin biosynthesis
TMO_2886	PWY-7238	sucrose biosynthesis II
TMO_2886	PWY-7347	sucrose biosynthesis III
TMO_2886	PWY-7385	1,3-propanediol biosynthesis (engineered)
TMO_2892	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
TMO_2892	PWY-6167	flavin biosynthesis II (archaea)
TMO_2892	PWY-6168	flavin biosynthesis III (fungi)
TMO_2949	PWY-5028	L-histidine degradation II
TMO_2949	PWY-5030	L-histidine degradation III
TMO_2970	PWY-5381	pyridine nucleotide cycling (plants)
TMO_2970	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
TMO_2974	PWY-1042	glycolysis IV (plant cytosol)
TMO_2974	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TMO_2974	PWY-5484	glycolysis II (from fructose 6-phosphate)
TMO_2974	PWY-5723	Rubisco shunt
TMO_2974	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_2974	PWY-6886	1-butanol autotrophic biosynthesis
TMO_2974	PWY-6901	superpathway of glucose and xylose degradation
TMO_2974	PWY-7003	glycerol degradation to butanol
TMO_2974	PWY-7124	ethylene biosynthesis V (engineered)
TMO_2974	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
TMO_2985	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_2987	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_2990	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
TMO_2990	PWY-5723	Rubisco shunt
TMO_3004	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
TMO_3004	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TMO_3005	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TMO_3006	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
TMO_3007	PWY-5392	reductive TCA cycle II
TMO_3007	PWY-5537	pyruvate fermentation to acetate V
TMO_3007	PWY-5538	pyruvate fermentation to acetate VI
TMO_3007	PWY-5690	TCA cycle II (plants and fungi)
TMO_3007	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_3007	PWY-6728	methylaspartate cycle
TMO_3007	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3007	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_3008	PWY-5392	reductive TCA cycle II
TMO_3008	PWY-5537	pyruvate fermentation to acetate V
TMO_3008	PWY-5538	pyruvate fermentation to acetate VI
TMO_3008	PWY-5690	TCA cycle II (plants and fungi)
TMO_3008	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_3008	PWY-6728	methylaspartate cycle
TMO_3008	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3008	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_3009	PWY-1622	formaldehyde assimilation I (serine pathway)
TMO_3009	PWY-5392	reductive TCA cycle II
TMO_3009	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TMO_3009	PWY-5690	TCA cycle II (plants and fungi)
TMO_3009	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_3009	PWY-6728	methylaspartate cycle
TMO_3009	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3009	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TMO_3009	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_3011	PWY-4041	&gamma;-glutamyl cycle
TMO_3011	PWY-5826	hypoglycin biosynthesis
TMO_3012	PWY-2941	L-lysine biosynthesis II
TMO_3012	PWY-2942	L-lysine biosynthesis III
TMO_3012	PWY-5097	L-lysine biosynthesis VI
TMO_3012	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_3012	PWY-6559	spermidine biosynthesis II
TMO_3012	PWY-6562	norspermidine biosynthesis
TMO_3012	PWY-7153	grixazone biosynthesis
TMO_3012	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_3020	PWY-4061	glutathione-mediated detoxification I
TMO_3020	PWY-6842	glutathione-mediated detoxification II
TMO_3020	PWY-7112	4-hydroxy-2-nonenal detoxification
TMO_3020	PWY-7533	gliotoxin biosynthesis
TMO_3021	PWY-6785	hydrogen production VIII
TMO_3026	PWY-2941	L-lysine biosynthesis II
TMO_3026	PWY-2942	L-lysine biosynthesis III
TMO_3026	PWY-5097	L-lysine biosynthesis VI
TMO_3070	PWY-5101	L-isoleucine biosynthesis II
TMO_3070	PWY-5103	L-isoleucine biosynthesis III
TMO_3070	PWY-5104	L-isoleucine biosynthesis IV
TMO_3070	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TMO_3097	PWY-6700	queuosine biosynthesis
TMO_3100	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
TMO_3100	PWY-2201	folate transformations I
TMO_3100	PWY-3841	folate transformations II
TMO_3100	PWY-5030	L-histidine degradation III
TMO_3100	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_3100	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
TMO_3105	PWY-4983	L-citrulline-nitric oxide cycle
TMO_3105	PWY-4984	urea cycle
TMO_3105	PWY-5	canavanine biosynthesis
TMO_3105	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_3105	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_3112	PWY-6420	pyrroloquinoline quinone biosynthesis
TMO_3120	PWY-6123	inosine-5'-phosphate biosynthesis I
TMO_3120	PWY-6124	inosine-5'-phosphate biosynthesis II
TMO_3120	PWY-7234	inosine-5'-phosphate biosynthesis III
TMO_3124	PWY-5022	4-aminobutanoate degradation V
TMO_3124	PWY-6728	methylaspartate cycle
TMO_3124	PWY-7126	ethylene biosynthesis IV
TMO_3151	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TMO_3151	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TMO_3151	PWY-6269	adenosylcobalamin salvage from cobinamide II
TMO_3153	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TMO_3153	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TMO_3153	PWY-6269	adenosylcobalamin salvage from cobinamide II
TMO_3154	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
TMO_3154	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
TMO_3154	PWY-6269	adenosylcobalamin salvage from cobinamide II
TMO_3164	PWY-7158	L-phenylalanine degradation V
TMO_3169	PWY-5162	2-oxopentenoate degradation
TMO_3177	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
TMO_3177	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
TMO_3177	PWY-6897	thiamin salvage II
TMO_3177	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
TMO_3177	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
TMO_3177	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TMO_3177	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TMO_3178	PWY-6897	thiamin salvage II
TMO_3178	PWY-7353	4-methyl-5(&beta;-hydroxyethyl)thiazole salvage (yeast)
TMO_3178	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
TMO_3182	PWY-5988	wound-induced proteolysis I
TMO_3182	PWY-6018	seed germination protein turnover
TMO_3183	PWY-6857	retinol biosynthesis
TMO_3191	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
TMO_3191	PWY-5111	CMP-3-deoxy-D-<i>manno</i>-octulosonate biosynthesis II (from D-arabinose 5-phosphate)
TMO_3192	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
TMO_3219	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TMO_3220	PWY-7205	CMP phosphorylation
TMO_3232	PWY-5686	UMP biosynthesis
TMO_3236	PWY-4381	fatty acid biosynthesis initiation I
TMO_3236	PWY-5743	3-hydroxypropanoate cycle
TMO_3236	PWY-5744	glyoxylate assimilation
TMO_3236	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
TMO_3236	PWY-6679	jadomycin biosynthesis
TMO_3236	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
TMO_3237	PWY-2161	folate polyglutamylation
TMO_3240	PWY-2161	folate polyglutamylation
TMO_3250	PWY-6829	tRNA methylation (yeast)
TMO_3250	PWY-7285	methylwyosine biosynthesis
TMO_3250	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
TMO_3254	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TMO_3255	PWY-2941	L-lysine biosynthesis II
TMO_3255	PWY-2942	L-lysine biosynthesis III
TMO_3255	PWY-5097	L-lysine biosynthesis VI
TMO_3255	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_3255	PWY-6559	spermidine biosynthesis II
TMO_3255	PWY-6562	norspermidine biosynthesis
TMO_3255	PWY-7153	grixazone biosynthesis
TMO_3255	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
TMO_3263	PWY-5392	reductive TCA cycle II
TMO_3263	PWY-5537	pyruvate fermentation to acetate V
TMO_3263	PWY-5538	pyruvate fermentation to acetate VI
TMO_3263	PWY-5690	TCA cycle II (plants and fungi)
TMO_3263	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_3263	PWY-6728	methylaspartate cycle
TMO_3263	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3263	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_3270	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
TMO_3270	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
TMO_3272	PWY-5741	ethylmalonyl-CoA pathway
TMO_3272	PWY-5744	glyoxylate assimilation
TMO_3272	PWY-6728	methylaspartate cycle
TMO_3275	PWY-3781	aerobic respiration I (cytochrome c)
TMO_3275	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TMO_3275	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TMO_3275	PWY-5690	TCA cycle II (plants and fungi)
TMO_3275	PWY-6728	methylaspartate cycle
TMO_3275	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3275	PWY-7254	TCA cycle VII (acetate-producers)
TMO_3275	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_3276	PWY-3781	aerobic respiration I (cytochrome c)
TMO_3276	PWY-4302	aerobic respiration III (alternative oxidase pathway)
TMO_3276	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
TMO_3276	PWY-5690	TCA cycle II (plants and fungi)
TMO_3276	PWY-6728	methylaspartate cycle
TMO_3276	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3276	PWY-7254	TCA cycle VII (acetate-producers)
TMO_3276	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
TMO_3285	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_3301	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_3301	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
TMO_3301	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
TMO_3301	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_3309	PWY-723	alkylnitronates degradation
TMO_3310	PWY-723	alkylnitronates degradation
TMO_3320	PWY-1622	formaldehyde assimilation I (serine pathway)
TMO_3320	PWY-181	photorespiration
TMO_3320	PWY-2161	folate polyglutamylation
TMO_3320	PWY-2201	folate transformations I
TMO_3320	PWY-3661	glycine betaine degradation I
TMO_3320	PWY-3661-1	glycine betaine degradation II (mammalian)
TMO_3320	PWY-3841	folate transformations II
TMO_3320	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_3325	PWY-5392	reductive TCA cycle II
TMO_3325	PWY-5537	pyruvate fermentation to acetate V
TMO_3325	PWY-5538	pyruvate fermentation to acetate VI
TMO_3325	PWY-5690	TCA cycle II (plants and fungi)
TMO_3325	PWY-5913	TCA cycle VI (obligate autotrophs)
TMO_3325	PWY-6728	methylaspartate cycle
TMO_3325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
TMO_3325	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
TMO_3328	PWY-5686	UMP biosynthesis
TMO_3330	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
TMO_3332	PWY-5663	tetrahydrobiopterin biosynthesis I
TMO_3332	PWY-5664	tetrahydrobiopterin biosynthesis II
TMO_3332	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
TMO_3332	PWY-6703	preQ<sub>0</sub> biosynthesis
TMO_3332	PWY-6983	tetrahydrobiopterin biosynthesis III
TMO_3332	PWY-7442	drosopterin and aurodrosopterin biosynthesis
TMO_3343	PWY-5751	phenylethanol biosynthesis
TMO_3367	PWY-7130	L-glucose degradation
TMO_3368	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
TMO_3368	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
TMO_3368	PWY-7242	D-fructuronate degradation
TMO_3368	PWY-7310	D-glucosaminate degradation
TMO_3402	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
TMO_3405	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
TMO_3405	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
TMO_3408	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
TMO_3429	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
TMO_3432	PWY-6168	flavin biosynthesis III (fungi)
TMO_3432	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
TMO_3459	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TMO_3459	PWY-3162	L-tryptophan degradation V (side chain pathway)
TMO_3459	PWY-5057	L-valine degradation II
TMO_3459	PWY-5076	L-leucine degradation III
TMO_3459	PWY-5078	L-isoleucine degradation II
TMO_3459	PWY-5079	L-phenylalanine degradation III
TMO_3459	PWY-5082	L-methionine degradation III
TMO_3459	PWY-5480	pyruvate fermentation to ethanol I
TMO_3459	PWY-5486	pyruvate fermentation to ethanol II
TMO_3459	PWY-5751	phenylethanol biosynthesis
TMO_3459	PWY-6028	acetoin degradation
TMO_3459	PWY-6313	serotonin degradation
TMO_3459	PWY-6333	acetaldehyde biosynthesis I
TMO_3459	PWY-6342	noradrenaline and adrenaline degradation
TMO_3459	PWY-6587	pyruvate fermentation to ethanol III
TMO_3459	PWY-6802	salidroside biosynthesis
TMO_3459	PWY-6871	3-methylbutanol biosynthesis
TMO_3459	PWY-7013	L-1,2-propanediol degradation
TMO_3459	PWY-7111	pyruvate fermentation to isobutanol (engineered)
TMO_3459	PWY-7118	chitin degradation to ethanol
TMO_3459	PWY-7396	butanol and isobutanol biosynthesis (engineered)
TMO_3459	PWY-7557	dehydrodiconiferyl alcohol degradation
TMO_3460	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
TMO_3462	PWY-4202	arsenate detoxification I (glutaredoxin)
TMO_3462	PWY-4621	arsenate detoxification II (glutaredoxin)
TMO_3470	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TMO_3476	PWY-2941	L-lysine biosynthesis II
TMO_3476	PWY-2942	L-lysine biosynthesis III
TMO_3476	PWY-5097	L-lysine biosynthesis VI
TMO_3502	PWY-1281	sulfoacetaldehyde degradation I
TMO_3502	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
TMO_3502	PWY-5482	pyruvate fermentation to acetate II
TMO_3502	PWY-5485	pyruvate fermentation to acetate IV
TMO_3502	PWY-5497	purine nucleobases degradation II (anaerobic)
TMO_3502	PWY-6637	sulfolactate degradation II
TMO_3502	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
TMO_3524	PWY-6454	vancomycin resistance I
TMO_3524	PWY-6455	vancomycin resistance II
TMO_3537	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
TMO_3537	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
TMO_3547	PWY-723	alkylnitronates degradation
TMO_3555	PWY-6936	seleno-amino acid biosynthesis
TMO_3557	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
TMO_3557	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
TMO_3557	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
TMO_3557	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
TMO_3560	PWY-5839	menaquinol-7 biosynthesis
TMO_3560	PWY-5844	menaquinol-9 biosynthesis
TMO_3560	PWY-5849	menaquinol-6 biosynthesis
TMO_3560	PWY-5890	menaquinol-10 biosynthesis
TMO_3560	PWY-5891	menaquinol-11 biosynthesis
TMO_3560	PWY-5892	menaquinol-12 biosynthesis
TMO_3560	PWY-5895	menaquinol-13 biosynthesis
