        istA NONE
        istB    2467 ..    2477 +  -3.2  -3.13403   GCCGGCAAGGATGTT                 TCTC GAA GAGG                 TATTCATGGCGAGGG  43 205
   TMO_c0004    5131 ..    5157 +  -8.7  -3.01712   AAGCAAGGTTACGAC        TAG-GCCGCTGG TAAT CCAGCGGCTCCA         TCTTGCGAGAAGGCG  56 350
        cusR   16661 ..   16676 +  -2.5  -4.46675   GGCCCTCGTTGGTAT              CGCCA CGACCT TGGTG               TTTCTTGTGTTCAAT  67 83
        cusS   18148 ..   18164 +  -2.2  -3.59698   CAGTCCTAGCGGCAG              GCGC CGACATCAT GCGC              TTGTGTATCCCATCG  50 162
   TMO_c0015 NONE
        yqcK NONE
   TMO_c0017 NONE
   TMO_c0018 NONE
        arsC NONE
        ywzG NONE
   TMO_c0021 NONE
        yhbS   23966 ..   23999 + -19.5  -4.42639   CAGCGATGCCTTCAA     CGCCGCCGCCTGAGC CAGC GCGAAGGCGGCGGCG      TTTTAATTCGGCTAT 100 13
   TMO_c0027   30728 ..   30741 +  -2.3  -2.52464   AGCGGTGTTCAACGT               GCTGG GCGT CCAGG                TGCATTGAGGCAAGA  37 4
   TMO_c0028 NONE
   TMO_c0029   31896 ..   31914 +  -5.8  -3.14602   GCCCCAGCCCCCTTG             CCCCCGGC TTG GCCGGCGC             TCTTGCTGCCGTCCG  50 77
   TMO_c0046   46613 ..   46630 +  -9.1  -3.82218   CGCGTGCGTTCTATA             TCCCGCG CCAC TGCGGGA              TTTCCTGATGTGGCT  73 69
   TMO_c0047 NONE
   TMO_c0048   48199 ..   48216 +  -8.3  -3.14132   GAACTCAGGGCCGTG             GCGGGCG TGGC CGCCAGC              TTGATCGCCGACCAG  57 151
   TMO_c0049 NONE
   TMO_c0050 NONE
   TMO_c0051   50728 ..   50742 +  -3.4  -3.14881   GTGGCAAGCATACGT               TCGGAG TAC CACCGG               TTCCTGGCGCACTTG  43 50
   TMO_c0052   53712 ..   53736 +  -6.3  -2.78463   GCGATCAGGTAGCTT          TCGGCCCAGAC ATA GACTTGGCTGA          TGTAGTAGCGGAAGT  46 400
        merR   73712 ..   73727 +  -7.5  -3.65351   CTTCGGTCAGCACGG              GGCGC AGGTCA GCGCC               TTTGAATCGCAGTGA  63 109
        zntR   82313 ..   82327 +  -3.4  -4.07568   GAGTGTCACTCTTTG               GCGCCC AGC GTGTGC               TTTTGCGACCGGAAA  60 490
   TMO_c0086   83754 ..   83786 +  -8.4  -3.14132   GTCGTCTCTCCTGTT     CGT-GTGGCCCAGGCC AAT GGCC-GGGCCGGGACG     TTGATGGGCAGGAGA  57 220
   TMO_c0098 NONE
   TMO_c0099   96272 ..   96282 +  -2.4  -3.57263   CGCGCCGTCGTCATG                 GCCG AAG CGGG                 TTTCGACCTCGGCAT  50 100
        carA NONE
        carB  113225 ..  113260 +   -22  -3.43203   AGAAAACGGCTGATC    GACATGCGGGGCCGAT GAAA ATCGGCCCCGCATGTG     TTCCTGTTGTCGTGC 100 50
        greA  113936 ..  113975 + -22.2  -3.03243   ACGCCGCCGAAGACA  TGAAGGGCCGGCCCTCCC GAGC GGAAGGGCCGGCCTTTCG   TCTTGCAGAATGCCT 100 49
   TMO_c0115 NONE
        trxB  119944 ..  119988 +    -4  -2.71712   ATGCCGTCGCGGAAT GAGCACA-TGCGGCCGCACCG AAAA CGGCGCGGCCGCGCTCAGGAC CTTTGAAGACCGGCG  42 24
        yafC  121047 ..  121081 + -17.9  -3.19668   GGGCGGCAGATGGAC     GGGGCGGCAGGGGAT CAGAT GTCCTCTGCCGCCTC     TTCCGTTGAATCGTC  91 76
        uvrB  131685 ..  131736 +    -8  -3.02511   GCAGCCCCGTCGTAT C-ATCGCCGTTGCGCAGCGCCGGGC ATCGG GTCCGG-GCGGCGCGACGG-GACCG TATTCGGGGCATGAC  54 129
        mdtA  132939 ..  132956 +  -2.6  -2.64144   CTGTCGATCCGGGTG             CCGTCA TGATCC TGTCGG              ATGTTTCCATCAAGC  38 52
   TMO_c0127  136122 ..  136178 + -16.3  -3.64703   CCGGGCCAGGCCGCC CGTTGCCCGGCCCCGGGGAATGACCCC GGG GGCGGCATCATCGGGGGCCGGGCGTCG TTTCGGTCCCCGACA  91 3
   TMO_c0128  137061 ..  137077 +    -5  -3.05844   GGGCGGTGTAGGACT              CCTGCC GCCCG GGCCGG              TCTTCCGGTACCGCC  47 59
        folB  137646 ..  137662 +  -3.5  -5.75342   CGGGAACGCCATGCA              GCCGGCG CAA CACCAGC              TTTTTTTTGCACAGG 100 136
        uvrC  140383 ..  140395 +  -6.2  -3.27022   CCGCCGAAGGCTGAC                GGCG ACGCC CGCC                TTCCTGTAGACTGAC  51 47
        pgsA NONE
        moaE NONE
   TMO_c0133 NONE
        sigW NONE
   TMO_c0135 NONE
   TMO_c0136  143986 ..  144015 + -18.5  -2.74192   CCCCTACAACGCAAT       ACGCCCGCTCCGG TTCC CCGGGGCGGGCGC        TGGTCTTAAGCCCTG  87 54
        yybR  145555 ..  145584 +  -4.1  -2.78935   AATAGGCGTGCAGCA       GGGTCGAGCAGGC CTCG GCCGGCTTGAAGC        TGTAATCGCCGATCT  40 194
        petP NONE
   TMO_c0141 NONE
   TMO_c0142  149615 ..  149635 +  -2.4  -3.96327   TCTGACGCAGGCCAG            CCGCCGCT CGGTA AACCGCGG            TTTATGGTCGGCGAT  57 495
        rpoH  153464 ..  153483 +   -15  -3.47573   GACACGGCATCGAAA            GAGGGGGC AGCC GCCCCCTC             TTCTGCTGTCGGTCC  86 54
        yibK NONE
        hemF  162741 ..  162770 +  -2.6  -3.01712   TCCGCATCTCGTCGA       CCCGGGCGCCGG CCTCGA TCACCGCCAGGG        TGTTCAACCCGCCGA  41 283
   TMO_c0159  165218 ..  165276 +    -8  -2.72855   CCGTCAAGGGGCTGG GC-GGTCTGGCCGGCAGGCGGGCGGTCGC CTCG GCCACCGCCC-CCACCCGGGCC-ACCAGC TGGTTCGACGGTTTC  49 402
   TMO_c0167 NONE
   TMO_c0168 NONE
   TMO_c0169 NONE
   TMO_c0170  175242 ..  175277 +  -4.4  -3.24188   GCCTCAGCACAGTCC    GGCCCGATACCGCCCG CCCC CGCGCCGCACCCGGCC     TTCGTGGTGGTCTGC  47 63
   TMO_c0171 NONE
   TMO_c0172  178053 ..  178083 + -13.9  -3.30124   GCAGACCCATCATCG       CGGAGCCCCCCCG CCCGC CGGGGCGGCTGCG       TTCTCGCCCATCCCG  80 120
        yeeA  186227 ..  186259 +  -8.9  -3.14931   CCTTGAAGACCGGCG      CGCCCGCAATCCCCC TGT GGGGCAAGGCCGGCG      TTCGTCAGAAATGCA  57 281
   TMO_c0177  187439 ..  187456 +  -2.7  -3.55444   CGACACCAATATCTG             TTCCGACA TCA TG-CGGGA             TTTCGCGCGTGGCGA  47 60
   TMO_c0180  191199 ..  191238 + -28.8  -2.87931   AAGACGGACGACACA  CAAAACGGCCGCAGTCGG GAAA CCGGCTGCGGCCGTTTTG   TGTGTCGGGGATCAG 100 137
   TMO_c0182  193639 ..  193651 +  -3.3  -3.73224   CGCGCGTGATAGGCA                TCGAC CCA GGCGA                TTTCGTCGGCGGTCA  55 203
   TMO_c0189 NONE
   TMO_c0190  204360 ..  204415 + -15.5  -3.14132   CCGGCCACGTAATCG GTGGTGGCGAGCTGGTAGAGCCGGTCG GGGT CGAGCGGCTC-ACC-GCCCACCATCAC TTCCTGAAGCCGGGC  77 287
   TMO_c0193  207940 ..  207976 + -14.4  -3.55444   CCGGCAACCACTCTG   CAACGATGCCCGCGCGC CCCG GC-CGCGGGCATCGGCG    TTTCCGGGGTGACGC  81 94
        ssuA  209150 ..  209206 +  -9.9  -2.95774   CAGCTTCGTGCCCGG CGGCTTCTCGGTTCAGGCGAAGTGACG ACC CGACGATGCGCCTGATCCTGAAGGCCG TCTCTCATGCCTATG  59 1
   TMO_c0195 NONE
        tauC  210757 ..  210771 +  -4.9  -2.87229   GAAACGCCTGCTGCG               CTGGC GCTGA GCCGG               GTTTCATGCTGGGAT  45 16
        zntB  212058 ..  212082 +  -5.7  -3.85698   GATGTGGGCCATAGA          GTCCTATTCCG TGG CAGAATAGGAA          TTTGTCAAACACACG  62 249
   TMO_c0199 NONE
        nitA NONE
   TMO_c0201  217188 ..  217214 +  -2.8  -3.37493   GCCCCCCTGCCGGCC         GAGGTGCTGCCA TGA TGCCGGAACCGC         TTCATCTCTTCCCGC  47 11
   TMO_c0202 NONE
   TMO_c0203 NONE
   TMO_c0204 NONE
   TMO_c0205  220248 ..  220258 +  -5.4  -2.87132   CTGCGGAGTGACCCG                 GATG ACG CATC                 TCTCTCCCGACCCCC  45 30
   TMO_c0206  221711 ..  221739 +  -8.2  -3.08679   CGACATAGCGGCCGT       CGGCGCGCAGTTCG TGG CGGA-TGCG-GCCG       TCTTCGGTCACCCAC  55 207
   TMO_c0210  224566 ..  224586 +  -3.4  -3.61398   CACCCCCACTGCCTA           TCGT-TCTT GTCC AAGATACGA            TTCTTCAACAAAAAC  51 102
   TMO_c0211  225766 ..  225777 +  -3.6  -4.25104   AGGTACACCCCCTCG                CGGC CGAC GTCG                 TTTTCCTCGGCACAG  64 199
        ybfI  226950 ..  226964 +  -3.4   -3.9467   CCGCGTCTTTGTCCT               GGCGCG GCG CGGGTC               TTCTTGTCTGTGCTT  58 60
        pamO NONE
   TMO_c0214  229906 ..  229933 +    -4  -3.57263   CGTCGGTGGATTGAT        CCCGCCGCCT CACCCGCC AGGCCACGGG         TTTGCGCATCGCCGT  53 27
   TMO_c0233  250397 ..  250440 + -23.5  -3.57144   CGCCATCCGACGATA C-ATCAAAGGCCCGCATCGT ATCTC ACGATGCGGGCCTTTGATCG TTTCCGGCTGACGCC 100 50
   TMO_c0256 NONE
   TMO_c0257 NONE
   TMO_c0258 NONE
   TMO_c0259 NONE
   TMO_c0260  285310 ..  285338 + -13.1  -4.10657   CGCTCTGACCGGGCG        GGACCACCGGTGG TAT CGGCTGGTGGTCC        TTTTACACCATATGA  89 33
   TMO_c0261 NONE
   TMO_c0262 NONE
   TMO_c0263  287400 ..  287416 +  -2.9  -3.28791   CATCTCGTTCTGAGA              CGTAATG CCC CGGTACG              TTCTCAAAACAAGAT  45 122
        yneJ NONE
   TMO_c0265  289247 ..  289262 +  -7.6  -3.32698   CCGCCAAATCTCTCC              GTAGAC TATT GTCTAC               TATTATGTACAATCA  58 167
   TMO_c0266  291386 ..  291419 + -13.1  -3.03124   CAGCGCAGCGGCTCA     GGTCCCGGTCAGGCG ATTT CAGCTGATCGGGACC      TGTTCCCGCGTCCGG  71 44
   TMO_c0268 NONE
   TMO_c0269  294759 ..  294806 +  -2.5  -2.67705   CTGTCATATCTGTCT GATCCGAGGCGGCTCGGATGA AGATGA TCGGCAGGGTCGTCCTGGGTC TGGTGTCGGTTCTGG  38 5
   TMO_c0270 NONE
        ykpB NONE
        ydeK  296974 ..  296988 +  -8.5  -3.59979   GGTGATCAGCTGCGT               CGCCG CCGCA CGGCG               TTTCGCCTGACCGGC  65 1
        gstB NONE
   TMO_c0275  298496 ..  298509 +  -4.5  -2.88544   GCCCGTCATAAGGAG               TGGCA GACA TGCCG                TATGTAAACATAAAG  43 30
   TMO_c0276  298821 ..  298865 + -21.4  -2.70932   GCTAAAAAACGACTC TCGAACGGCGCCCCCACGGG GGCAG CCAATGGGGGCGCCGTCCGA TGCTTCAGGCCGGAA 100 136
        ptsJ  306153 ..  306186 + -20.5  -2.87132   GCCGCCGCAATGGCG     GCTTGCACCAGCCATC TAA GATGGCTGGTGCA-GC     TCTATGGGAACGGCC 100 150
        yedZ NONE
        ycaN NONE
        menE NONE
   TMO_c0289 NONE
   TMO_c0290 NONE
        creA  316042 ..  316063 + -12.3  -2.62184   TCCACCCGCGGCAAT           TGCCCGCCGC CGC GCGGCGG-CA           TAGTCTGGGCGGCGG  64 78
   TMO_c0292 NONE
   TMO_c0293  318334 ..  318346 +  -6.9  -3.01712   ATCGTCGGGCGCCGG                GGCGG TCA CCGTC                TCTTCCAACGGACGC  48 500
   TMO_c0295  319693 ..  319704 +  -2.2  -4.52857   CGGAGCAGGGTGGCC                GCAT AACG GTGC                 TTTTCTCTGCACCCT  67 423
   TMO_c0296  320141 ..  320157 +  -9.3  -2.57132   CCCAGACCTATCGCG              CGGGCGG CCC CCTCCCG              ATTGTCCCACCCCCG  55 45
        yjfL  320651 ..  320661 +  -2.4  -3.04144   GGCTGGTGAATGCCG                 GGGC GCT GACC                 TATTGAACCTGAAGC  41 9
   TMO_c0298 NONE
        ygiC NONE
   TMO_c0305 NONE
   TMO_c0306  330981 ..  331011 + -15.3   -4.2558   CGGACGGATGCCGGC       GCAGCGGGCGGGC TTTAT GCCCGCCCGCGTC       TTTTCGTCCCGGCTC 100 50
        yjbG NONE
   TMO_c0309  336282 ..  336321 + -14.3   -2.7624   GTCCGGTGCCTGATC  ATTGGCCGGTTCCGCAGG GGCCG CC-GCGGAACCGGCCACC  TCATGTCATTTTCGT  71 42
   TMO_c0310  337338 ..  337350 + -10.5  -3.01791   GACCCGTGTCAGGTC                GGCGG CTG CCGCC                TGTTCGCGCGCAGCT  59 107
   TMO_c0313 NONE
        ilvG NONE
   TMO_c0315 NONE
   TMO_c0316  347243 ..  347254 +  -7.2  -3.08776   ACCATAATTGAGACC                CGCC TTGT GGCG                 TCCTTTTCCGAAATT  52 176
   TMO_c0320 NONE
   TMO_c0321 NONE
   TMO_c0322  351652 ..  351668 +  -3.5  -3.70853   GATCGGCGAACTGCC              CGGCCTG GAT CCGGCCC              TTCTTGCCTGCTTCG  55 455
        ybfI  354595 ..  354627 +  -8.4  -2.66733   TATCTTGCCGCCCTT     GCA-CGGGATCCCCG CGGC CGGGGGTTCCGATGG      TCATCTGCCTTGAGA  53 90
   TMO_c0326  354933 ..  354964 + -24.5   -4.4078   GCGACGGAATTCGAA      CGGGCGCCGCCTC TTCATC GAGGCGGCGCCCG       TTTTCGTTCCACAGG 100 48
   TMO_c0327  355471 ..  355483 +  -7.7  -3.02263   GACCAGCCCGGCCAG                GATCC ATG GGATC                TGTTCGGCCGGCTGT  52 111
        cqsA  359796 ..  359831 +  -5.2  -3.39327   GCATCGGCCATGGCG    CC-GGCGAGGGCGGCCG CCC CCGCCCCTTCCGCCAGG    TTATGGGTGTCGGCG  49 213
        ydfD NONE
   TMO_c0335  364146 ..  364193 + -19.2  -3.49289   CCGCTCACCCCGGCC TGATCA-CCATGTGGCGGGGGCG TTG CGCCCCCGCCACATGGCTTGACG TCTTCTATATTTTGA 100 23
   TMO_c0336 NONE
        arsB NONE
   TMO_c0338 NONE
   TMO_c0339 NONE
   TMO_c0340 NONE
   TMO_c0341 NONE
   TMO_c0342  370819 ..  370835 +  -9.3  -3.53012   CCGTCGGCGATGAAG              CCGGCCG CCT CGCCCGG              TTTCACGAAACCCAG  61 345
   TMO_c0345  373440 ..  373452 + -10.5  -2.70932   GGGCGTGCCGTCGAG                GGCCG CCG CGGCC                TGATTGCCGACACGC  59 10
   TMO_c0346 NONE
        dppB NONE
        ddpC NONE
        gsiA NONE
        mcbR  379753 ..  379775 +  -6.9  -3.86897   CTCCGCACCCTTGGC          CGCC-GCCGC AATG GCGGCTGGAG           TTTGTACGCCCTCGC  64 70
   TMO_c0351 NONE
   TMO_c0352 NONE
   TMO_c0353  385058 ..  385109 + -10.2  -2.62613   CCGATCTCCACCGCC CTGCATCCGCGGGAGACAGCG TCTCCTCCCCT CCC-GTCTCCCGCGGATGCGC ATCTTTCGCCTAAGG  58 69
   TMO_c0355  387219 ..  387256 +  -5.5  -3.31792   CTTCGGCCGTGGCCT  CCGCCG-CCTC-GGCCG CGATCT CGTCCAGACGTCGGCGG   TTGTCACCCTGGTCG  49 383
        bcpA  388561 ..  388583 +  -6.2  -3.14132   CTATGCCGGAACCGC           GGCATGACCG CCG CCGTGATGCC           TTCCTCGGGCCAGAG  49 19
   TMO_c0358 NONE
        leuD NONE
   TMO_c0360 NONE
        dctP NONE
   TMO_c0362 NONE
   TMO_c0363  394887 ..  394916 + -17.2  -3.17598   CCGCGGACGTCCTCA       CGCCCTCGTGCA TTCCCC TGCACGGGGGCG        TCCTTTTATCCGAAT  91 100
        citH  396424 ..  396439 +  -4.6  -4.19238   CTATGGTGCGCAAAC              GCAGCG TTCC CTCTGC               TTTTCCGCTTGAAAA  64 162
        mqsR NONE
        ygiT  397184 ..  397215 +  -4.3  -3.62597   CGCGGATTGAGCTTT      CAGCCGTTG-CCGG TGGAT CTGGTCGGCGGCCG      TTGTTGGCGGATCAG  53 31
   TMO_c0367  398355 ..  398401 +  -6.5  -3.01924   GCCCCCGCTCCGCCT CCTGCAG-GCCGCGCCAGTCGAC CTT GTTGG-TGGCGGTGCGCGGCAGG TCTTCGGCGAAGCTG  48 156
        ygfF NONE
        bioC  401734 ..  401752 +  -4.4  -3.10344   GTCGAGGCATCGGCA             TAGCCGAC CCG GGCGGCGA             TCTCTTCCATCGACA  43 100
   TMO_c0372 NONE
   TMO_c0373  405145 ..  405175 +  -4.5  -3.76373   AGCGCATCCAGCCCG       GCCGCCCGCCGTT CCGGC GACAGCTGGCCGC       TTTCGATATTGGCCA  58 506
        rutR NONE
        suhB  418538 ..  418556 +    -3  -4.12188   TCAAAGGAAATTCAC             GCCGCG AACCTCC CGGGGC             TTTTACGCGTGCTCG  60 125
   TMO_c0393  431129 ..  431148 +  -3.4  -3.64703   GCGGATGGCCCGGAC            ATGGCGCT CATA GGCGCCGC             TTTCCATCAGCAGGG  51 353
   TMO_c0395  433070 ..  433102 +  -7.6  -3.55444   GGGAGGGTGCGGGTT     CC--CGGGCCGCGGCG AGG CGCCACAGCCCGCAGG     TTTCAGGAATCAGAC  60 159
   TMO_c0397  434879 ..  434896 +  -5.5  -2.63715   CTGACCACCGCCCCG             TCGGGCA GACA TGCCGGA              TGCTATGACGTCAGT  45 37
   TMO_c0399  437098 ..  437133 +    -4  -3.53224   CACCTTCACCCATTT    TTCGTCGTCATCATCA TCAC TGATGTTGACCAGGGA     TTTCCAGGCGCCATC  49 448
   TMO_c0401  439779 ..  439805 +    -2  -3.15579   CCAGGGCCGCGACGC         CGCCTGAGCGGC GGC GCCCCTCCCGCA         TTCGTCCCGAGTTGG  42 19
   TMO_c0403 NONE
   TMO_c0404 NONE
        yufO NONE
        yufP NONE
   TMO_c0407  445037 ..  445049 +  -4.7  -3.16676   GGCACTGACACCCCG                GACCG TCA CGGGC                TCTTCCCTTGATACC  47 33
   TMO_c0408 NONE
   TMO_c0409  447046 ..  447090 + -11.3  -4.08767   CCACCCGCCCCACCC CGGCGGGGACCACCATGCCG CCCCCT CGGCGGCG-GGTCCCCGCCC TTTTGGAGGACTGAA  81 43
   TMO_c0410 NONE
   TMO_c0411 NONE
   TMO_c0412  449811 ..  449840 + -10.9  -2.66435   TCATCGCAAAGCGCA       TCCTCTCTTCA CACCCCGA TGAAGAGAGGA        TGGTGTCATGCCCGT  62 92
        yakc  450880 ..  450905 +  -4.5  -2.52464   GAGACCGGGGCCGTC         TGACGCCCCGG CCCC CCGGGGAGAGA          TGGATTGGCCGACGG  41 23
        yhgD  451498 ..  451517 +  -4.2  -3.36694   GGCCTGACCCCGACC            GAGGCGTGA ATC TC-CGCCCC            TATTTGCGAATCACT  49 17
   TMO_c0415  452553 ..  452572 +  -6.3  -2.72511   GCCCGGCGGCGTTCC            GGCGCGG ATAGGC CCCCGCC             CTTTCGCCAGATGAC  46 15
   TMO_c0416  453882 ..  453902 +  -3.9  -2.78463   GCGCCCGCGGCGCTC            TCGGGCG CTAGCCT CGCCCCA            TCTCATCCAGCGCCT  42 62
        fyuA NONE
   TMO_c0418  457239 ..  457297 +  -7.3  -3.54543   CGGCCTTCGGCGATC GGGGCGGCGGCCAGGAAATC-GGGCAT GCAGCCG ATGCCCAGGCCGCC-GGTCACCGCCCC TTTCAGCGCCTCCAT  60 203
   TMO_c0420  460121 ..  460133 +  -3.4  -3.61178   CGGTGGCTTGCATCT                CTTC CGCCT GAAG                TTTCAGATAGGTGGG  51 521
        nahR NONE
   TMO_c0424  463026 ..  463049 + -14.6  -3.60214   CGCGGCTGACGGCGG          CCGTCACCGC CGCG GTGGTGACGG           TTCTGTCCTTACGGT  87 32
        yqhC  477992 ..  478005 +  -2.3  -3.59262   CATGTTCCTGAAGAG               TCTGC CCGT GCAGC                TTTGACCGTCTGCAC  50 7
   TMO_c0439  478688 ..  478724 + -10.6  -3.05844   TGGTCTGGCGGCTGA    TGCGGCGGCCCGGCTG ATCCG CCTCCGGGCCGCAGCC    TCTTCCGCTCCCCCA  63 9
        sbcD NONE
        sbcC  483872 ..  483893 + -12.9  -3.12327   TCCGCGCATAAAAAA           GGGGCCGCC CGCG GGCGACCCC            TCTTCAGTCTGCCGG  72 49
        ydeL  487072 ..  487100 +    -6  -3.35679   CAACCGCTTCCGACA       GGCGTTGGATGCC TTCA GGGAT-CAGCGCC        TTGTCGATGCAGGAA  52 108
   TMO_c0445  490280 ..  490294 +  -2.7  -2.62983   GCAGCAGCCACACCA               GCTCC CGCGA GGCGC               TGGTGTGGCCATGCC  38 72
        ytcJ NONE
   TMO_c0447 NONE
   TMO_c0448  494609 ..  494628 +  -4.8  -2.91438   AATTTCGACTGAGCC            GGAGCCGG ATGT CGGGCACC             CTTCTTATCGTCGTT  45 29
   TMO_c0449 NONE
   TMO_c0450  497087 ..  497125 + -13.1  -2.52464   CCGTCTCTGCCGGCG  CGTGGGTGG-TGCGGCCT GCCC GGGCCGCATCCACCCCCA   TCCATTCCCCCGCGC  67 41
        dppB NONE
        appC NONE
   TMO_c0453 NONE
        appF  501320 ..  501348 +  -2.2  -3.14132   CGGTGATCATGCCCT        CGGTGCGGGCCG CCAGC CGGATCGCGTCA        TTGGTCCCGGCCGAG  43 241
   TMO_c0456  502861 ..  502879 +  -5.8  -3.01712   GGGCGGTCTGACGGG             GGCTCAGC CTC GCCGCGCC             TCTTCAGCCACCGGC  48 43
   TMO_c0458  505427 ..  505456 +  -9.1  -3.10409   CCCACCCCAAAGAAA       AACCGCCGGAGAG TCCC CTCCCCGGCGGCA        TTCCGTCCGTTCCTG  60 46
   TMO_c0465 NONE
        alc1  512230 ..  512240 +  -2.4  -2.57132   CCATGGAGTGAGCGT                 CCAG ATG CAGG                 CTTATCCCCGCACCA  38 30
        allA  512831 ..  512848 +  -2.8  -3.08464   TGTAATTAACTTGAA             GAATAT GATCTA ATATTC              TTAAATAAATCCTCG  43 95
   TMO_c0469  515076 ..  515105 +  -3.6  -3.21099   CTCGATCTCGATACT       CCCGGATAAAAT AATAGA ATTTTTTCGGGG        TTCCTCGTCCCAGCG  45 75
   TMO_c0472  518316 ..  518330 +    -7  -3.32844   GCGCTGGCGGGTCAG               GCGCCG GGT CAGCGC               TTCTGCCGTGCGCCG  55 303
   TMO_c0474 NONE
   TMO_c0475 NONE
   TMO_c0476 NONE
   TMO_c0477  523324 ..  523340 +  -2.1  -3.83998   AGCTGAGCCAGATCC              GGACGTC AAC GACGGCG              TTTGCTCTCCGCTCC  55 237
   TMO_c0482  529416 ..  529432 +  -9.3  -2.73994   CTCTTTCAGCAGCGC              CCGGCGG AAG CCGCGGG              TCATGTTGCCGCCCT  52 124
   TMO_c0485  534220 ..  534239 + -12.8  -3.07816   CGATCCGCCACGGAA            GCCCCGCC GGGC GGTGGGGC             TTCCGTCCATCGGAG  72 51
   TMO_c0486 NONE
   TMO_c0489  538365 ..  538405 +  -6.6  -2.62184   TCGGGCCGCATGCCA GCGCGGCCG-GTCGGCCAG AATG CGCGCCGCCGTGGCCGGGC  TGGTGTGCAGCGCCG  47 439
        cynR  545236 ..  545250 +  -5.6  -3.59979   CTTACGATAGAACGC               GGCGGC AGC GTCGTC               TTTCGCATCGACGAC  54 329
        cmpR  550785 ..  550840 + -13.2  -3.24411   CCATCGCGGGTGACA TGC-GCTGTTGCCGTCCCGGCAGGAGG TTC CCTGTTGCCGTCCCGGCAACGGCAGCG TCTCTTTAAAGCGCT  74 28
   TMO_c0502 NONE
   TMO_c0503  552379 ..  552389 +  -6.8  -2.62184   CAAACCCGTGCGCGG                 TGCC TGG GGCA                 TCCTCTCCCCGGCGC  47 72
        sdaA  553799 ..  553813 +  -5.6  -2.78384   GCCTGGGCGGCCTGG               CCGTCA ACG TGCCGG               TCTGCTGACCAGCGG  46 3
        ytnL  555210 ..  555225 + -11.8   -3.1372   CTCAGTATCGGCCAA              GGCCGG CAGC CCGGCC               TCTTCATCCAGCATC  64 157
   TMO_c0507  557211 ..  557231 +  -4.7  -3.41051   ATCATCACCCATTGA            TGGCATTTT GGG ACAGTGCCA            TTCTGGTCACCATCG  51 40
   TMO_c0508  557990 ..  558000 +  -8.2  -2.51547   TCTGGCCGGCCAGCT                 CGCC AGC GGCG                 GTGTTCATCTCCGCC  51 102
   TMO_c0512  564329 ..  564351 +  -6.8  -3.57144   GGCCTTTGCCGCATG           ACCGCCGGCG GGC TGCCGGAGGG           TTTCCGGATGCGCCG  59 25
        yhbS  565360 ..  565386 +  -9.4  -3.74693   CCGTATTAGCCGATT         CGGCTATTAACG GCC CGAAAATAGCCG         TTTCGTCAAGTGGCA  71 514
   TMO_c0514  566980 ..  566999 +  -9.2  -2.94144   TACAGCCAAGTACAT            CGGCGACC CGAC GCTCGCCG             TGGTTTCCCTACCGA  59 466
   TMO_c0520 NONE
   TMO_c0521 NONE
        yurM NONE
        smoK  576224 ..  576238 +  -7.1   -4.4448   TTTCTGTCTGACGAC               TCGCG ATATA CGCGA               TTTGTTTACCCCTTT  75 30
        rpfC NONE
   TMO_c0525  579405 ..  579418 +  -2.3  -3.14132   CCCCGGGGCAGGGTA               TGGCG AGGC TGCCG                TTACTCGGCAGGCCC  42 143
   TMO_c0527 NONE
        dctD  584805 ..  584815 +  -3.2  -3.01712   GGGCATCGGGGATGG                 TCTG GTT CAGG                 TCTTCCAGCCGGAAA  43 434
        tnaA  589066 ..  589102 +  -5.8  -4.14392   AGGACCGCTGCGCCG   CAGCGCCTGACCCACGGC CTC GCCGTCGG-C-GGCATTG   TTTTGCCGCTTGGCG  66 16
   TMO_c0532 NONE
        sodB  590720 ..  590746 +  -2.1  -3.53012   CCAGCAGCGGGCAGA         GCGCAACCCCA AGCCC TGCGATGGCGC         TTTCGGCCGCCAGCA  47 210
        pdxA NONE
        ydbB  594083 ..  594095 +  -3.3  -3.15861   GCGCATCACGTTGAA                ACTGC CGC GCAGA                TTGATCGCGATCATC  45 432
        yhjC NONE
        cmpR  598679 ..  598712 +  -5.1  -2.77899   GAGCCGGGCGATGCG     CTGATCCGCAGCCCA GGCA TGGGCTCCGAAGCCG      TCATTCATGGGAAAG  44 439
        ytfH NONE
   TMO_c0545  601417 ..  601440 +  -2.3  -3.39908   CCGACGCGCGACATG          CCCGAGGAT AGCTGC ATCCCCCGG           TATCTTTTACGCAGA  45 60
   TMO_c0546  602899 ..  602928 +  -2.7  -3.01712   CGGCGACCCGGGCGC       CCCGCCCCATCAGC CAG GCA-ATGTCGCGGG       TCTTGCCGCAGAGCG  41 520
        moaR  604196 ..  604210 + -11.4  -2.73364   GTGGCATCGGCATGC               TGCCGG CAG CCGGCA               TCCTTCCACTGGGCA  59 295
   TMO_c0551  607105 ..  607133 +  -3.8  -3.86015   AACCGCGCAACCGGC       GGCTGACGGCTGA CGGA TCACCCATC-GCC        TTTGTCGCAGGGATG  58 20
   TMO_c0552  608695 ..  608708 +  -8.1  -3.04248   ACAGCCCCTTCCAGC               CGACC AGCA GGTCG                TATTCCGGGATCTTG  52 270
   TMO_c0560  624018 ..  624030 +  -3.3  -3.41878   ACCGGATCGGCCGCC                GGCAT GCG ACGCC                TTCTCACTTCGAAAC  47 61
   TMO_c0561  625843 ..  625864 + -11.6  -3.06696   TGCGGATCGCCGCGC           GCTGAGCG CGCCCC CGCTCAGC            TCTCTTCCCGCCCGC  66 21
        purU  628540 ..  628558 +  -7.4   -4.4078   CCCGCGGTACCGCAG             GCTGTGTG ACG CATGCAGC             TTTTGCTTGCCGCGG  78 49
   TMO_c0564  629747 ..  629757 +  -2.4  -2.87564   CGGCCGGCTTCCCGT                 GTCG ACA CGCC                 TGTCTCGGGACATCC  40 94
   TMO_c0565 NONE
   TMO_c0566 NONE
   TMO_c0567 NONE
   TMO_c0568  634656 ..  634712 +  -4.3  -3.61398   ACGTCGATCACCCGG CGCCAGC--CGGCGATGCTGTAGGCGCC GACC GGT-CCTTCGGCACCGCCGATGCCGGCA TTGTTGACCGCCAGA  51 465
   TMO_c0570  635307 ..  635327 +  -2.4  -3.14132   CCGCAACCGGGTGGT            GACCGCAA GGCGG TAGCGGGC            TTGATCGCGGACCAC  42 10
        luxQ  639190 ..  639200 +  -8.2  -3.20382   ACGTCGACATCCTCG                 GCCG TGT CGGC                 TTCGTCGGTGTCCGG  56 291
        mexR  644770 ..  644794 +  -4.1  -3.14132   CGCAGCCCGCATCCT          CCGGAACCG ATGGCGA CGGCGCCGG          TTGCTCCCCCAAACC  45 44
   TMO_c0577  645217 ..  645242 + -12.5  -2.72463   TCAGAGATGAAGAAG         GCCCGGGCGGT TTCT GCTGTCCGGGC          TCCTTCACCGTCAAT  65 77
   TMO_c0578 NONE
   TMO_c0579  646261 ..  646290 +  -9.2  -4.62069   GATCAAAAAGAAAAA       GGCCTGACCAGC AGACAA GCCGGTCAGACC        TTTTTCCGATCACAC  88 175
        yvoA NONE
   TMO_c0582 NONE
   TMO_c0583 NONE
   TMO_c0584  651126 ..  651147 +  -6.5  -3.40403   CACGCCGCAGCGACC           GTTGACGCC TCAG GGCTTCAGC            TTCTCCTGACGCGAC  55 21
   TMO_c0590 NONE
   TMO_c0591  659549 ..  659601 + -19.8  -4.05788   CCGATCCGGAGGTCG CCGCCCGACTCGC-CCCGCTTCTCG ACGA CGAGGAGCGGGCGCGGGCCGCGCGC TTTCATTTCGACCGC 100 112
   TMO_c0593  662742 ..  662762 +  -2.3  -3.05596   CCCCGGTGCGGCCGT            GCGGGCCCC TAT GGAGACCGG            TTGAATGCGCACATC  42 138
        secD NONE
        grsT  666464 ..  666506 + -14.6   -3.2794   GCCATCGGCAGCCTG GGGCGCGCCCGTGGCGCCGG ACG TCGTCGCCGCGCGGGCGCCA TTGCTGTCGATGCCG  79 518
        didA NONE
        didB NONE
        didC NONE
        didD NONE
        didE NONE
        didF NONE
        didG NONE
        didH NONE
        didI NONE
        didJ NONE
        mbtH  729823 ..  729833 +    -4  -3.93236   ATCAGGGAGGAGGGA                 TATG CCA CATA                 TTTATCAACTTGCTC  58 151
   TMO_c0614 NONE
   TMO_c0615  732788 ..  732799 +  -2.2  -3.64487   CTCCAATGGCATGTA                TGTG ATGG CACG                 TTGTTCGCGGTCTCC  50 265
   TMO_c0626 NONE
   TMO_c0627 NONE
   TMO_c0628 NONE
   TMO_c0629  751511 ..  751532 +    -8  -2.78816   AGTGCGGCCGCCACC           GCCT-CGGC GCGTG GCCGCAGGC           TGTCGTCGCGGATGA  49 366
   TMO_c0632  754365 ..  754383 +  -5.8  -3.14931   ATGATACGGGTCACA             CCGCCTTC AGC GCCGGCGG             TTCGTCGGGCGTGCC  49 72
        aglA NONE
   TMO_c0637  760204 ..  760223 + -12.8   -4.7254   GATCCTGACGACAGG            GGCGGCTC TTCG GGGCCGCC             TTTTTCATGGCCCCT 100 33
   TMO_c0638 NONE
        ilvE NONE
   TMO_c0640  763684 ..  763704 + -16.1  -3.32498   CTGCGTACTTTCCGA            GGCCCGCGC TTA GCGCGGGTC            TTCGTGTATCCGGTG  88 83
   TMO_c0642  765934 ..  765950 +  -5.7  -3.59979   GCGATCAGCTCGGCG              CGCGGCT TCG GGCAGCG              TTTGGCATAGGAGGC  57 73
   TMO_c0644  769219 ..  769245 +  -9.3  -4.09685   GCGCTCCCGCGCCCT         TGGCCCCCGCC TCAAT GGCGGGAGTCG         TTTTAGCCCCTCGCC  76 56
   TMO_c0645 NONE
        siaT NONE
        ygiK  772300 ..  772337 + -19.9  -4.07568   CCCTCCGACCTGTTC   CGAACCG-CCCCCGCCGG CCA TCGGCGGGGGCCGTTTCG   TTTTGCGGCAAGGGC 100 47
        cysB NONE
   TMO_c0649 NONE
   TMO_c0650 NONE
   TMO_c0651  777189 ..  777207 +  -3.1  -3.14132   ACCCGTATGAGGTAC             GGCCATG GCGCA TATGGTC             TTCGTGGAAACCACC  43 31
   TMO_c0652 NONE
   TMO_c0653 NONE
   TMO_c0654  781215 ..  781252 +  -4.7  -4.25283   GCCGGTGCCGGCCAG   CCGCTTGGCGAGCCC CCGCGACA GGGCGAGATAAGCGG    TTTTGGTGACGCCGT  68 229
   TMO_c0656  783668 ..  783685 +  -9.1  -3.64703   CGACCGGCGGCAGAT             CCCG-GCC GGC GGCACGGG             TTTCGGTGGCGAGCA  63 290
   TMO_c0658 NONE
   TMO_c0659  786282 ..  786313 + -11.5  -3.18681   GACGGACGAGAGACG      GGTGCGGCCGG-CG GGGAA TGACCGGCCGCCCC      TTCATGACATTGGGG  68 39
        siaP NONE
   TMO_c0661 NONE
        siaT NONE
        maiA  790337 ..  790354 +  -2.7  -2.90725   TCAGCTCCTGGGCAA             TGT-CGGG AAT CTCGTACA             TCTGATCTGCTTTCG  40 417
   TMO_c0669  795038 ..  795057 + -13.6  -3.28712   GGATATAACAGGAAA            GGATCCGC AGAC GCGGATCC             TTATCCCGAGCGCCC  78 46
        zntR  804652 ..  804674 +  -3.2  -2.85351   CGTGAGACATCAGGA           AGCCCGCGTC AGA GGCGTGGGAG           TGTGCTATCCAAAAA  41 36
        rsmA  805795 ..  805808 +  -3.8  -3.55444   GCCGCGGCGAAGCGG               TCGC GATCGA GCGA                TTTGGGCGGTGACCG  51 426
        tyrS  808997 ..  809022 + -17.5   -3.9941   GGTCGGGACGAAATA         CGGGCGGCACC GGTC GGGGCCGCCCG          TTTCCTTATAGGCGA 100 57
        slyA NONE
   TMO_c0682  811916 ..  811931 +  -4.6  -2.62983   GGTCCACCGGACGGC              GGATGC GATC GCTTCC               TGATGTCCCCATGGC  43 7
        emrA  813472 ..  813491 +  -4.8  -3.29144   AGGCCGTCGCCAGGG            CGCGGGCG ATGG CGGGCGCG             TTCTGCAGGCGATAG  49 503
        glnE NONE
         bcp NONE
   TMO_c0687 NONE
        yncA  821606 ..  821630 +  -2.7  -4.25104   TGATCGGCATCTCCG          GACACCCGTGC AGC GCAGGAGTCTC          TTTTCCTGCAAGGGC  63 38
   TMO_c0689  822840 ..  822858 +  -4.4  -3.55622   AGCACCGCCTCTTCC             GCATGGCC GAA GGCGAAGC             TTTCGGCCGATTCGG  51 484
   TMO_c0692  825435 ..  825452 +  -3.3  -3.53012   ACAGAATGGCAGAGA             GCC-AGGC GGC GCCACGGC             TTTCGAAGAACAGCG  49 287
        rhiR NONE
        rhlI NONE
   TMO_c0699  832509 ..  832531 +  -6.9  -3.54919   TAGGCGGCGATATTG          CCCGC-CCGG TCGG CCGGGGCCGG           TTTCAGCACATGGTT  57 148
   TMO_c0704  843279 ..  843305 + -25.2   -4.0162   CACGATCAAAATAAT         GGGGCCGCCGGT TCG ACCGGCGGCCCC         TTTATCGTCTCCGAA 100 95
   TMO_c0707  847366 ..  847377 +  -7.2  -2.82516   ATCGTTGAGACCACG                GGGC GCCT GCCC                 TGTCGTCCTGAACCA  49 33
   TMO_c0708  848530 ..  848540 +  -2.4  -4.24342   AGCAGGGTGCGGGTG                 GCGG TCG CCGG                 TTTCTTGGTGCACAG  61 373
   TMO_c0710  849565 ..  849595 +  -6.6  -3.65902   CAGGGATAGGCGCCG       CGTCCACCCGGCAC CAT GATCCGGGCGGAAG       TTTGCCTCAGCTCCG  59 32
        vagC NONE
   TMO_c0712 NONE
        nahR  851986 ..  851998 +  -4.7  -2.82516   TTTCAGAATAATCTT                CCGCC GAC GGCGA                TATGATCATGAAAAC  45 166
        bdlA  853843 ..  853870 + -21.3  -3.59979   GGCCACAGCGAAACA        CGGCCCGCCGG ATTCCC CCGGCGGGCCG         TTTCACGTCAGACAG 100 40
   TMO_c0719  857979 ..  857997 +    -3   -2.9348   ATGGGCGCGACAGAA             TGTGACGC GGC GCAGCACA             TCTATCGGCTTTGCG  42 109
   TMO_c0720 NONE
   TMO_c0721  861594 ..  861640 +  -4.2  -3.64703   GGTGACCCCCAGGCT GCGCCGCACCGCCTGCTGTTC CACCGT GCCCATCAGCCGG-GCGGCGG TTTCGATCAGCACCG  51 404
        aroQ NONE
        accB  874205 ..  874221 +    -3  -3.02144   CTGGCGATCATCGAG             TGA-CGC GGGA GCGATCA              TGTTCGAGAAGGTGC  42 23
   TMO_c0733  875585 ..  875627 + -17.7  -4.07568   GACCATCCCGCATCA AG-GGGCGGGCGGGCCGGAG GCGT TTCCGGCCCGCCCGTCTGCG TTTTACCGGAGCCCA 100 46
   TMO_c0734 NONE
   TMO_c0735 NONE
   TMO_c0736  879463 ..  879482 +    -7  -3.05816   GGCTGCTCTTGCCAC            CCGGCGCC ACGG GGTGCAGG             TTGGGTGCCGGCTGC  51 42
   TMO_c0737  880784 ..  880811 +  -8.2   -3.4072   CTTCGCCGCACCGCC        GGCGGCGGGGGC TTCG GCACCGGCCGGC         TTCTCCTCGCCGCTG  61 508
        nrdJ  886056 ..  886092 +   -26  -4.25104   CATCCCGATGACCAC   CCG-ACGCCGCCCCGGT TCCG ACCGGGGCGGCGTTCGG    TTTTGGTGGCAGCGG 100 71
   TMO_c0742  886353 ..  886370 +  -9.1  -2.78384   GGGGGCCGGGCGGAT             GCTGGTC CGAT GACCGGC              TATCGTCGCCCCGAA  56 13
   TMO_c0743  887091 ..  887116 +  -3.1  -3.35813   GCCTGCGGCGAGCGG         CGGACCCGGAT CTCG ATCCGGCGGCG          TTCCTTCACGTCGCC  47 53
        livG NONE
        livF NONE
        livH NONE
        braE  896123 ..  896142 +  -4.2  -3.57144   TGACCAGAACCAACC            TGCGATCG CCCC CGGTTGCG             TTTGAAGGTCAGCGC  53 38
   TMO_c0756  900970 ..  901013 +  -7.3  -3.28712   ATGCGGATGCCGAGT TCCGAGG-C-ACCCGGCGCCG CCGA CGGTGCCGGCACGACCACGGA TTGTGCCCAGAGGCC  55 207
   TMO_c0759  904323 ..  904367 + -10.6  -2.71712   TGTTGACGGAGTGAC CGTCAGGCCGCGTCGGTCGCG CGGG CGAGGCCGA-GCAGGCTGGCG ATTTCGCAGCGCGGG  59 27
   TMO_c0762  907253 ..  907281 + -18.9  -5.93809   CCGGTCACCGCATCA        CGGCCCCGACG CTTCCCC CGTCGGGGCCG        TTTTTTTTGTCCCGC 100 389
        xdhA NONE
        hcrC NONE
   TMO_c0765  912045 ..  912068 +  -6.7  -3.08996   AGCGGGTGTCGGAGG          TGGGG-CCGC GCTGA GCGGTTCCCA          TATTCGGTCCGCGTC  51 12
   TMO_c0779  930261 ..  930271 +  -2.4  -3.84648   CGCAGCCGTGCGGCT                 GGCG AAA CGGC                 TTTCGTCCTGTTCGA  56 515
   TMO_c0781  932623 ..  932656 + -29.7  -2.87211   GGATCCCACAGACGA     CGACACCCCCGCCGG TCTC CCGGCGGGGGTGTCG      TCTGTCGACGCCGAT 100 45
   TMO_c0795  950551 ..  950587 +   -10  -3.01924   CACCTCGCGCGCGGC   CCGGCGGCGGC-GCGGC ACAT GGCGCGGTTCCCGCCGG    TCTTCGCGGCGAATC  59 171
        ispB  954278 ..  954316 + -23.3  -3.57462   TTCGGTATGTCCGAT  CGAC-ACGCCCCGGCAGG TTTT CCTGCCGGGGCGTCGTTG   TTTCAGGGTCCGGTC 100 178
   TMO_c0802 NONE
   TMO_c0803  957009 ..  957027 +  -4.5  -4.73633   GGCCCGATCGGAAAT             TATCGCG CTGAA CGCGAAA             TTTTCTCTGTTCTTA  78 86
        ppsA NONE
   TMO_c0805 NONE
   TMO_c0806 NONE
   TMO_c0807 NONE
   TMO_c0808  962688 ..  962727 +  -8.5  -3.01924   CATCGACACCGCATA  GGCGGCATAGCGCGA CAACCAGAGA TCGCGTTCCGCCGCC   TCTTGCGGAAAGCTG  55 211
   TMO_c0812  965300 ..  965320 +  -5.3  -2.52464   ATGACGGCGCCGTAA            AGCCGGG CGAGCGC CCCGGCA            TCGGTTCCCGCAGGC  42 150
        estB  967531 ..  967564 + -10.9  -3.31144   CAGCTCGCGAAAGCC     CTGCGCGGC-CAGCTC GGC GAGCAGCGCCTCGCGG     TTCTCCACATGGCGA  66 406
        gst3  968612 ..  968631 +  -5.6  -3.03124   GCCAAGGGCGCGGAA            GCGCC-CGC CCG GCGAGGGGC            TATTAAAGACTCCCG  48 126
   TMO_c0819 NONE
   TMO_c0820  974249 ..  974264 +  -2.5   -3.4178   TCGGTGGTGAACGCC              CGC-GG CAGCT CCAGCG              TTATGCTGGCCTCGT  47 111
   TMO_c0825 NONE
   TMO_c0826  980029 ..  980039 +  -2.4  -3.31144   CCTCCCAGGTCAGCG                 CGGG AGA CCGG                 TTGTCGCCGTCGCAG  45 399
   TMO_c0829  982568 ..  982582 + -12.8  -3.53012   AGGCATGCAGGAACA               CCCGGC CGA GCCGGG               TTTCAGCGGGCGGCG  73 325
        hmuR  991942 ..  991960 +  -6.6  -3.29511   GGGCCGCGCGTTCTC             GCTCGGCG CAA CGCTGACC             TTCTGACCCGATGAC  54 1
        yddA  993798 ..  993810 +  -4.8  -3.07043   AGCGACAGATCCAGC                GCCT TCACC AGGC                TGTTCAGCTGGTCGA  46 68
   TMO_c0840 NONE
   TMO_c0841  998528 ..  998562 +  -7.1  -3.35679   GCATATGGATCAGAT    TG-CGGCTGCCTGCGC GCTC GTGCAGGTCGTCGACA     TTCTGGGTCACCACC  55 433
   TMO_c0847 1004228 .. 1004253 +  -3.1  -2.70932   ATGAGCCGGGGCGCC         CCCTTGCGGTC ACCG GCCCGGAAGGA          TCATTGACCGACAGC  40 37
   TMO_c0848 1004954 .. 1004967 +  -3.1  -3.83502   ATGCGCTCGGGCGAT               GAC-GC AGC GCAGTC               TTTCGTGTCGCACTG  56 24
        acoR 1007433 .. 1007470 +  -5.3  -3.73072   ATCGCCCGTGGCGCC   ACAGCTGTGGCAGGGCG CACG CGACACGCCACAGCGGC    TTTCGTCCAAGCATT  58 243
        acoX NONE
        acoA 1009743 .. 1009757 + -11.4  -3.61894   TCTACGTCTCGTACT               GAGCCG GTC CGGCTC               TTCTTCCGGAGGATT  74 24
        acoB NONE
        acoC NONE
        budC 1012756 .. 1012783 + -21.3  -4.34402   CCACCGCCGTCTCCA        CCCCGCCCCGG CTCCAC CCGGGGCGGGG         TTTTCCTGTGCGGCC 100 65
   TMO_c0855 NONE
   TMO_c0856 1014636 .. 1014654 +  -4.5  -3.57462   CAAGCGCTGCCAGAT            C-CGCGGT CACC GCCGCGCG             TTTACGGGTGCCGTC  54 111
   TMO_c0859 1016996 .. 1017012 +  -6.5  -3.01712   GTAGCGCCGGACGGG              TCTGGCT CGA AGCCTGA              TATTCAAAAGGCCAG  50 421
        asnO 1019503 .. 1019514 +  -7.2  -3.54459   GGAAGAAACGCCGGC                CGCC ACCG GGCG                 TTTCCGGGAAGTTGC  60 167
   TMO_c0867 1026733 .. 1026749 +  -5.7   -3.1978   GCGCAGCAGCATGTG              CCAGCCC TGG GGGTAGG              TGTTGATCTGCAGGT  50 111
        yncB 1031271 .. 1031294 + -17.4  -3.32993   GGAAGGGTTGCGGAG          CGGGGCGTGG ATAA CCGCGCCCCG           TTCATCTGTAGATCG  93 45
   TMO_c0872 1033198 .. 1033225 +    -9  -3.05384   TGCCGGTCAGCGGCA        GGTCGGGCCGGC TGCT GCCGTCCTCACC         TTGCATGCCGGCACA  55 489
   TMO_c0876 1035630 .. 1035656 +  -3.6  -3.09327   GAAGAATAGCTCCTG         CCTTTGCATGCT CTT AACATGCCGGGG         TCTTGCATCCCGTGA  43 32
   TMO_c0877 1037847 .. 1037865 +  -3.1  -3.14229   GTAGCGATAGCGGAT            CGCATGGT GGCC ACCG-GCG             TCTTCATGCCCCTGT  43 361
   TMO_c0879 1039041 .. 1039074 + -29.7  -4.41348   CCCTGATGGCAAGCC     GGGGGCCGCACCGAC GATC GTCGGTGCGGCCCCC      TTTGTTTCGCGCAAG 100 67
   TMO_c0880 NONE
   TMO_c0881 NONE
   TMO_c0882 1042545 .. 1042590 +  -4.6  -4.07568   GCTGATGCGGAGACG GCGTCC-CGGGCGGGACCA TCGGAGGCT TCGGCCCGCCCGTGGATGA TTTTGAGGGGAGACC  64 54
   TMO_c0883 1043755 .. 1043796 + -17.4  -3.54424   ACACTTGCGTCCTCT TACG-CCGCCGCCCAGGATC GGAC GATCC-GGGCGGCGGTCGCA TTTCGGGCCATGCAC  93 80
   TMO_c0884 NONE
   TMO_c0885 1046156 .. 1046185 +  -4.1  -3.09635   ATGCGCGGCATCCAC       CGGGCGGAGCTTC GCCT GGATCTCGGCCAG        TTCCGTCCTGCCGAT  43 225
        acoA NONE
        pdhB 1054549 .. 1054588 + -20.9  -5.15634   GACGCACCGGAACGC  AAAACCGCCGGCATCCT TCCCCC AGGATGCCGGCGGTTTC   TTTTTTGATCGGATG 100 220
   TMO_c0897 NONE
   TMO_c0898 NONE
   TMO_c0899 NONE
   TMO_c0900 1085005 .. 1085033 + -12.4  -5.64274   TCGACGACGCATCAG        GGGGCACGCGGA GACGA TCCACGTGCCTC        TTTTTTTGTCCGTCG 100 56
   TMO_c0901 1086024 .. 1086038 +  -2.2  -4.26559   GCTTGATTTTCCTGT               TATATT CCT AATATG               TTCTTATTTTGGTTG  63 427
         sam NONE
        yodQ 1094824 .. 1094837 +  -2.3  -3.06796   CGACCAATCTGGCAT               CACCC GATC GGGTA                TTGGGTGACGTCCCA  42 54
   TMO_c0926 1112821 .. 1112846 +  -2.5  -4.21908   CGCCATCAGCAGACG         GCTGATCGG CGGGGGTT TCGGTCGGC          TTTTCGGTGGTCATG  61 226
   TMO_c0934 NONE
   TMO_c0935 NONE
        lysX NONE
        yncD 1124999 .. 1125035 + -12.3  -3.21099   TCTGAGCCGTCAGCC   GG-CGTGGGGCTTGGC GGTAAG GTCCAGCCCCACGGCC    TTCATGATCGCGAGA  71 36
        fadD NONE
        menE NONE
   TMO_c0940 1125638 .. 1125650 -  -4.8  -3.55444   GCCTTACGCCCCAAA                CACC GTCTT GGTG                ATCCGTGCCGCGGCA  53 1
   TMO_c0939 NONE
   TMO_c0938 1124655 .. 1124685 - -10.2  -3.31461   GACCTATGGCGACAA       CGCCCTGCCCGGCG TGC CGCCGCACCGGGTG       TATGCCGAACTGCGC  63 333
   TMO_c0933 NONE
   TMO_c0932 1116411 .. 1116439 -  -7.3  -2.77036   CAAGGGAAGACATGA        GCGGATGCAGG ATCACCG CCGGCAGCCGC        GGGATCGGGTGGAGT  51 75
        livH NONE
   TMO_c0930 NONE
        livG 1113644 .. 1113658 -  -2.7  -2.58861   GACCATTTCCAGAAC               CGCGG TCATG CCTCG               TCCTCGCCCAGATAG  38 16
        livF NONE
   TMO_c0927 1112242 .. 1112287 -  -5.4  -3.50393   TGTCAGGCCACAGAA CGCGATCACCGGCGGC--CATGG CCG CCCTGCAGCCGGCGGTG-TCGCC GGCTTCGCCGCCCGC  52 380
   TMO_c0925 NONE
        fixN NONE
   TMO_c0923 NONE
        petJ 1107891 .. 1107907 -  -9.3  -3.01712   GCTCCTCGGGGAAGA              GGTCGGC CCG GCCGGCC              CTTCTGATGGGACCG  59 58
        fixG 1106312 .. 1106335 - -16.8  -3.54488   GGCTCTGAAAGAAGA          TCCAGGTGCC CGGA GGCACCTGGA           GGGGTATCGGAGGGG  91 50
   TMO_c0920 NONE
        fixI 1103195 .. 1103207 -  -9.1  -3.47573   TCAGGTAGATCAGAA                CGTCC ATG GGACG                ATGGCCTTCCGGAGG  65 47
   TMO_c0918 1102980 .. 1103007 -  -9.8  -2.66316   CTCCGGACCATATGA        CGG-ACCACTGGC CCC GCCAGCGGAACCG        GCGGTGGATCAGCCC  56 34
        siaP 1101724 .. 1101737 -  -3.1  -2.78463   ACCCCGTCGAGCACA               CG-CTC GAC GAGGCG               TCCCAGACGTCCGGC  40 90
   TMO_c0916 NONE
   TMO_c0915 NONE
        linX NONE
        fabG NONE
   TMO_c0912 NONE
   TMO_c0911 NONE
   TMO_c0910 1096831 .. 1096860 -  -4.1  -2.71011   ACCGGGCTGGAATGA       GGCGCAGGCCCGT TCAT ACGGATCTGTGTC        GCAAATCCGATATGG  42 75
   TMO_c0909 NONE
   TMO_c0908 1095129 .. 1095153 -  -2.2  -3.61001   TTTCAGAAAAATATA          TCGATCAG ATTTGCGGG CTAATCGA          CCTTCTCCCGCGGCA  50 18
   TMO_c0905 NONE
   TMO_c0904 NONE
        mdtA NONE
   TMO_c0902 1086115 .. 1086139 -    -5  -4.18908   ATATCCGGAAAATAA          CGGCGTCA TATCATGGT TAACGCCG          CAGCCGCATGCGGTG  64 455
   TMO_c0896 NONE
   TMO_c0895 NONE
   TMO_c0894 1056244 .. 1056276 -   -17  -3.54129   GATACCGTCCCGAAA     TG-GCCGGCGGGCCG GTTA CGGCCCGCCGTCGCA      GTCGTCCTGTCAGCC  91 35
   TMO_c0893 1054553 .. 1054584 - -21.7   -4.2803   CACCGGAACGCAAAA      CCGCCGGCATCCT TCCCCC AGGATGCCGGCGG       TTTCTTTTTTGATCG 100 52
        kipR 1050928 .. 1050943 -  -3.2  -3.05596   CAGGGCCTCATGGAA              CGAACG AGAC CGTTAG               CCTAGCAAATCATTC  43 131
        slyA NONE
        yhcA 1048829 .. 1048867 -  -2.1  -2.73356   AAATAGGAGAGATGA   CGGACGAGCATGGCGGA TGGCC TCCGGCGGGGGCGCCCG   GGTCAGCCATCCGAC  38 101
        cynR 1047732 .. 1047769 - -11.1  -3.56643   GGCACAGCGGGGAAA   CGGGCTGGCGATGCGCG ATGG CGCGCACCCACGACCCG    TCATCCGGCCCCGAC  74 169
        yhjX NONE
   TMO_c0878 1037135 .. 1037145 -  -2.4  -3.55071   CCAGACGCGCCCAAA                 GCTC CAT GCGC                 AGCTTTCGAGATGCC  50 415
   TMO_c0875 1033803 .. 1033830 - -24.2  -3.69354   GGCCAGAACGCGAAA        CGGCCGCCTCCG TTTC CGGAGGCGGCCG         TCGATTTCGGGATCT 100 203
   TMO_c0874 1033486 .. 1033508 -  -5.5  -3.65351   TGACCGTCACCGAAA           CGGCCCG CGACAGGAT CAGGCCG           TCACCGGGTCGGTCA  57 18
   TMO_c0873 1032336 .. 1032346 -  -4.6  -3.15544   CTGGACCTGGATGAA                 GACC TGC GGCC                 CGGCGTGCGGCTTGC  47 509
   TMO_c0870 1028680 .. 1028719 -  -8.5  -3.14132   CTCTCTCCGGATCAA GGTCCCCCGGCGACACGAC ATCC GCCG-GCCACCGGGGG-CT  TCTTCTACTTCAGGG  57 71
        paaG NONE
   TMO_c0868 1026262 .. 1026309 -  -3.4  -3.78775   GGCTGGAGCAGGAAA TCCGC-TCGGCCG-G-CGGCGCA GGCGA TGCGCTGGCGCGGCTGAAGCGCA TCGCCCGCTGGTTTC  55 374
   TMO_c0866 1023528 .. 1023542 -  -3.5  -2.95774   GAGATCCATCAGAGA               CTGGC TCCTC ACCAG               CTGTAGCGCAGCCCG  42 19
   TMO_c0865 NONE
        viuB 1021174 .. 1021184 -  -2.4  -3.61517   ATCGGCTGTCAAGAA                 TCGG CAC CCGC                 AGGAGTAGGACTGAC  50 81
   TMO_c0863 NONE
   TMO_c0862 1019324 .. 1019366 -  -5.5  -2.80816   GTGGCATCCATTACA GCCGCTTCATCCGCTGGGTC GAGG GATCCAACGCGTGA-GCGAC ATGGCGGGCCGCCCG  47 43
   TMO_c0860 1016513 .. 1016550 -    -7  -2.78384   GGCCTGGGCACCACA  CGAAG-TG-CGCCCGGTC TCCT GCCCGGGGGGCAGCTTCG   CTCAGTCACGCTTTG  49 91
   TMO_c0858 1015518 .. 1015546 -  -5.2  -2.62616   GCACGGCTGAGAGGA       CCGGCTCCATCGG TCAG CCG-TGGATGCGG        ATCAGCTTCTGATCT  43 10
   TMO_c0857 1014250 .. 1014266 -  -5.7  -3.64198   CGCCCACATACAGAA              GCGACAG ACC CGGCCGC              CCTTCAATCTGGGCC  57 312
   TMO_c0846 1002256 .. 1002266 -  -6.8  -2.53876   TCTCACCCCAACCCA                 CCGT GGC ACGG                 CGGGGATCCGGATCA  47 124
   TMO_c0845  999950 ..  999960 -  -2.4  -3.82551   AAAGTGCAGAAAAGA                 CCAG GGG CAGG                 CGGCTCGGGGAGGAA  55 139
   TMO_c0844 NONE
   TMO_c0843  998920 ..  998944 -   -10  -5.23316   GACGAGAGGAAAAAA          TGCGGCACTG CGGCT CAACGCCGCA          GCACCTGCCGGCAGT 100 15
        npdA NONE
   TMO_c0839  994744 ..  994797 - -24.5  -4.07568   CGCCTCCCCGGAAAA GC-TCCGGGGCCGGCTGCGGGCGACC CAT GGTCGCGCGCCCCCGGCCCCGTATGC AAGCCGTCAGCGTCC 100 194
        yrpG  993612 ..  993644 -  -3.2  -2.88544   GCCGAGGCCGAGACA      CGGGTGCTGGCGCT GATCG ACCGGATGCACCCG      CCGCCGGCGGTGCTG  42 121
   TMO_c0835  988774 ..  988787 -  -4.5  -4.25104   CGCCGGCCATCAAAA               TGCCG CAGC CGACA                CGCGAACGCCCGCCA  66 117
   TMO_c0834  988103 ..  988152 - -24.4  -2.62396   CAGCCTCCCATATGA CGGCGGCCCCCGC-CCTGCCC TCTGATCCG GGGCAGATGCGGGGGCCGCCA TCATAGCGCGTCCGG 100 80
   TMO_c0833  987267 ..  987281 -   -10  -3.09273   GGGTCGCAAGACATA               TACCGC AAA GCGGTA               GCAGACTGGAAACAC  63 113
        mutA NONE
        mutB  982920 ..  982948 - -16.8   -4.8048   GGGCGACATGAAAAA        CTCCCCTCCCGA TGGTC TCGGGAGAGGAG        CAATCCACGGATCCG 100 92
   TMO_c0830  982164 ..  982203 -    -4  -3.14132   CTGGCGGTCGATGAA  GTGCCGCC-CACCGCCACC TTC GCGGGCGGTGCGGTGGTGC  TGACCACCCTGGTCC  45 94
        ybcM NONE
        ybhB  979387 ..  979401 -    -7  -2.65815   GGCAGATCGACATGA               GCGCCG ACC CGGTGC               TGATCGATCTGATGG  48 267
   TMO_c0824 NONE
   TMO_c0823  976230 ..  976242 -  -7.7  -3.86194   AACCTCCGCCATAAA                TCAGG CAG CCTGA                TCCTGAGGCGCGATC  67 102
   TMO_c0822 NONE
   TMO_c0821  974146 ..  974158 -  -4.1  -3.53091   ATCGGCCTGTCCAAA                TACCG CCA CGATA                ATTGAACCCGGCGGT  51 40
        yfhB  969845 ..  969863 -  -2.2  -3.73224   GGATCGGTCAGGAAA             CCCGGCGG ACA CTGTCGGA             AACGGCCGGTCCCTG  53 313
   TMO_c0817  968579 ..  968595 - -10.8  -3.14211   ACCGTGCGGGAGCAA              GCCGCC ATTGA GGCGGC              GGCCAAGGGCGCGGA  63 200
   TMO_c0815  966996 ..  967011 -  -3.2  -3.55444   CCGGCAGCCCGCAAA              GCCC GGGCACAT GGGC               CTGGGGTGGTGCTTA  51 152
        ycfQ  965141 ..  965172 - -12.8  -3.05816   GGATGGCGGAGGCAA      CCCCGCCGCCCCGG CGCA CCGGCTCGGAGGGG       TGATCGGCCACCGCC  72 41
   TMO_c0811 NONE
   TMO_c0810 NONE
        cmoA  962214 ..  962228 -  -3.4  -3.24188   CCAGATCATCATGAA               CGGCCG CAC CATCCG               CGTGGACGAGCCCGA  45 305
   TMO_c0800 NONE
   TMO_c0799 NONE
   TMO_c0798 NONE
   TMO_c0797  950194 ..  950217 -    -8   -3.5393   ATGATCTCCTGGAAA          GACGGCGCGC CTTT GCGCTCTGTC           GCCATGCTCAGCCCG  60 257
        glyQ NONE
        glyS NONE
        ppdK NONE
   TMO_c0792  943546 ..  943560 -  -5.6  -2.80113   CATCACCCGACTATA               CTGCCG GAC CGGCAC               GCCCGCGTCAGCGGT  47 33
   TMO_c0791  942717 ..  942759 - -18.3  -2.52464   TGGGCGGTGAAGGCA GGCCGCGCGGGCCGCCGCC CGCAT GGCAGCAGCCCGCCCGAAC CGTCACGGACCGGTC  86 39
   TMO_c0790 NONE
   TMO_c0789  941317 ..  941327 -  -2.4  -3.29144   GGAGTTTTCCGAGAA                 CGGC AGG GTCG                 AGACCTGATGGATCA  44 275
   TMO_c0788 NONE
   TMO_c0787  940528 ..  940551 -  -6.6  -4.19238   CCCCCAACGGCAAAA          CCGGTTTCCG TATA CGTCAACCGG           CCGTTCGACTATCCC  68 198
        lcfA  938663 ..  938676 -  -5.3  -2.53876   GGGCATGTTAATTGA               CGTTT ACGT AAACG                TCAACTAACTCCGGA  43 50
   TMO_c0785 NONE
        fadA NONE
        fadN NONE
        mmgC  932620 ..  932659 - -29.4  -2.89564   CGCGGATCCCACAGA  CGACGACACCCCCGCCGG TCTC CCGGCGGGGGTGTCGTCT   GTCGACGCCGATGGT 100 46
   TMO_c0780  929640 ..  929696 -  -4.7  -3.18264   GCCCTGACCGACGAA GCCGCCGCCGCCCTGGACGCGACCATC GCC GCCGGCCATGCCCCGGACCGCGAGGTC TCGGCCAGTTTTCAG  47 116
   TMO_c0778  927995 ..  928005 -  -5.4  -3.33261   GGCCAATGCCGAGAA                 TTGC AAC GCAA                 TCCGATGTGAATAAA  51 152
        sir1 NONE
   TMO_c0776  925303 ..  925344 - -14.6  -3.53563   ATACGTCCCGGGAAA TGCGAACCGGCCCGG-ATCA TAGC CGATTCCGGGCCGGT-CACA CATCCTGTCTTTAGG  86 54
        asnO  923106 ..  923117 -    -3  -4.83169   ACCCTGTCACAAAAA                TCAA TACC TTGA                 TCTGCATCAACTTCC  75 169
   TMO_c0774  922570 ..  922623 - -25.4  -3.89822   CATGCAGGGGATAAA CGTCACGAGGCCCGGCACCGCCGCCT GCAC AGGCGACGG-GCCGGGCCCCG-GAAG GCGCAAGGCGGGGCT 100 45
   TMO_c0773  920460 ..  920514 - -19.4  -4.07568   GGCCGCCTTGGAAAA CCGCGC-CGCAGCCGGGGCC-TGGCGG TCGC CCGCCACGGCCCCGG-TGCATGCGCAT GTTCCTGGCGATCAG 100 37
        yqjP  919186 ..  919230 - -23.6  -4.09685   TTCCACGCCGTAAAA GCGA-CAGCCCGCGTCCCCGG AGGT CCAGGGGCGCGGGCTGGCCGC AAACGGATAGATTGC 100 71
        braF  918052 ..  918069 -  -2.6  -3.61715   GACTTCGCCGAAGAA             CAGCCA ATCCAA CGGCCG              CCTCCTTCCACATAC  50 105
        livH  917168 ..  917183 -    -6  -3.17075   TGGTGGCGAAGGGAA              CGGGGG CAGA CACCCG               GTCAGAGACGCTCGA  49 27
        livM  916029 ..  916053 -  -4.9  -2.90496   TCCTCCCTGAAAGGA         CGCCTGC-CG CCGGTT CGTGCCGGCG          GTCGTTGACGATCAT  45 59
        livK NONE
        livF NONE
   TMO_c0766  911931 ..  911945 -  -2.7  -3.76224   GCCGGATGCAGGAAA               TGCCG GCCTT CGGCG               ACCTGCTCGACGACG  53 162
        braC  904890 ..  904920 - -21.9  -3.78934   TCCCCCGGACAATAA      GACGCGGCGGCCGG TTGC CCGGCCGCCGCG-C       TGGTCGTCAGTTCTG 100 57
        nsrR  904236 ..  904264 -  -5.2  -2.73124   CGCGAGCCCGGAAAG       CCGCACCCAA-CG ATGC CGACCGGCTGCGG        AAATATCTGGCGCGT  43 86
   TMO_c0758 NONE
   TMO_c0757 NONE
        mauR NONE
        yafC  897415 ..  897430 -  -7.5  -4.16016   CCACCCCGGAATAAA              CCGGC CGATAT GCCGG               ACTTTCCGGACAGTT  71 51
        nepI  895867 ..  895886 -  -6.3  -3.95324   CAGCGGCAACAACAA            GGGCGCC ATCCTG GGCGCGC             TGGTGATCTGGGTCA  63 290
   TMO_c0748 NONE
   TMO_c0747 NONE
   TMO_c0746 NONE
   TMO_c0745  888089 ..  888135 -  -7.2  -2.66316   GCCGCGACGATAGGA GGCGGCAGAACGCCGCATGCCG CCATC CGG--TGCGTCGCTCATCCGCC CTGCCCCACGGGTCG  48 17
   TMO_c0744  886889 ..  886908 -  -9.2  -3.86897   TGCAGCGGTCACAAA            GGCCGTCG GCGC CTACGGCC             CCTCGGTCCTGGCCG  70 186
   TMO_c0740  881340 ..  881354 -  -6.4  -2.87132   GCCGGCCGGCAGATA               CCCGAT CAG ATCAGG               ACGGCGTCCAGGGTT  49 21
   TMO_c0739 NONE
   TMO_c0738  879877 ..  879889 -  -9.1  -2.79183   CCGAGCTGCACCAGA                TGGGC CAT GCCCA                CAGCATCGAGGTACG  52 444
        thiG NONE
   TMO_c0729 NONE
        gshB  870134 ..  870187 -  -7.9  -3.61715   GAGGTGGTTGAAGAA CGGCGGCCGCCGGACATCAGAGGTC AGGT GGCATCAGATGTCAGATGGCCGCAA AGCTCAGGCGGCGCC  63 29
   TMO_c0727 NONE
        iolS NONE
   TMO_c0725  864460 ..  864479 -    -5  -4.26903   GGTACGGTATCAAAA            GCCA-GAGC GGT GCTCATGAC            TGCCCGTCCTCGACA  68 19
   TMO_c0724 NONE
   TMO_c0723 NONE
   TMO_c0722  861139 ..  861174 -  -4.5  -3.73224   CCAGCTGCCACGAAA    TCACCGTCCGCGGCC GGGTGG AACCGCTGGCGGTGC     ATGCGGTGCCGGCCG  58 70
        vllY NONE
   TMO_c0717 NONE
   TMO_c0716  853841 ..  853872 - -19.4  -3.71378   TAGGCCACAGCGAAA      CACGGCCCGCCGGA TTCC CCCGGCGGGCCGTT       TCACGTCAGACAGAA 100 76
   TMO_c0713  850284 ..  850330 -    -3  -3.31144   TCTCGATGTCGAGAA CTGGCTGGCG-TAAGAGGTGA CCTGGT TCACCCCTCATCCCCATTCAG GCACCGGCTACCCGC  47 73
   TMO_c0709  847961 ..  848011 -  -7.6  -3.06183   GGCAGCCTGACCGAA GACCGCGTGCTCGCCATCGTCGCCG ATCG CGGCATCGACGCCGAG---GCGGTC AAGGCACGCATGCAC  52 201
   TMO_c0706  844572 ..  844615 -    -9   -2.9186   ACGGAATGCGACAGA TCCGACCGGGATTATGAAACC ATA AGTT-CATAATCCCGGTCATG CCAATCGCGAAGTGC  56 47
        aspC  843275 ..  843309 - -24.4  -4.30844   AGCCCACGATCAAAA     TAATGGGGCCGCCGGT TCG ACCGGCGGCCCCTTTA     TCGTCTCCGAACGGC 100 51
        amiC  837191 ..  837247 -  -5.6  -2.56122   GGTCAGGAGAAAACC GAGCAGGCGGATCAGGCTCATCGGCTGT GCA AC-GCCG-CGGGCCAGGGCCGGCGGCTC CCATGTGGTTGACGG  45 231
        mrcA NONE
        prfB NONE
   TMO_c0700  832081 ..  832109 -  -4.6  -3.53343   AAGGGCCCGTTCAAA       GGGCTGATCGCCAG CGG CTGGC-A-CAGCGC       CGGGTTGATGATGCG  52 331
   TMO_c0696 NONE
   TMO_c0695 NONE
   TMO_c0694 NONE
   TMO_c0693  824896 ..  824931 -  -6.8  -3.14693   TGCACGAGGAAGAGA    CGGTGACCACGCCCCTG CTT CAGGC-CGTGTTCAGCG    ATGCCGAACTGGCCG  50 245
   TMO_c0690  823717 ..  823771 -  -2.6  -3.16564   CGCGCAGCGCATCAA GGCCCGGCA-GCGCATCAAGGCCCA GGCCGA CGGTCATGGCTGCGCGTCCCGGGGC GTGTTTGCGGCGCCG  42 4
   TMO_c0691  821923 ..  821953 -  -4.1  -3.96148   TGTCGCCACGATAAA      GGATCTCATCGAAGA CGG TCGTCGATGAG--CC      TGGTGCTTGACGGAT  60 467
   TMO_c0684  812875 ..  812928 - -17.3  -2.57092   AACTTCACCAAGGTA GCGCAGCGCCTGCCGGTCCGGATCG CGAT CGACCACGACCAGCCGGCGCTGGAC GGCCTGGCACCGGGG  77 99
   TMO_c0680  808997 ..  809022 - -17.5  -3.44848   GGTCGGGACGAAATA         CGGGCGGCACC GGTC GGGGCCGCCCG          TTTCCTTATAGGCGA  93 50
        anmK  805020 ..  805031 -  -4.4  -3.06183   CTGACCCTGATCGAA                TTCG GCGC CGAA                 TTTGCCGGCATGCTG  43 371
        zntA  801701 ..  801759 - -9.09999  -2.86164   CGGGGAAGGACGACA CCCCTCAGACGCGGTTCTGCCCGGGCCTGC GAAT GCAGACCCGGGCAGAACCG-G-C-GAT-G- ATCAATCGATGGAGT  58 67
        pepQ NONE
        kdgR NONE
   TMO_c0672  798397 ..  798429 -  -5.5  -3.05816   GCATTGTGGAGCGAA     CG-GCGCCGCTCCA CCTGTC TCGAGCGGCGGGCG      CCTATTTGATTGCGC  49 27
        siaT  796423 ..  796435 -  -4.7  -3.24747   GGGGGATATCAGGAA                GTCGC CGG GCGCC                GCCACTGCAGCCACA  49 6
        thrC  795038 ..  795057 - -13.6  -3.99275   GGATATAACAGGAAA            GGATCCGC AGAC GCGGATCC             TTATCCCGAGCGCCC  93 56
        cysE  793433 ..  793448 -  -4.6  -3.06261   TGTGAATTCGTAAGA              GGTGCT GGTC AGCGCC               GGTCGGCGGCGCCGG  47 18
        iscR NONE
   TMO_c0666 NONE
        iscS  790406 ..  790417 -  -3.6  -2.67392   TATACTAAAACAGAT                CAGG CTCT CCCG                 CGACCTCAACTCCGG  40 31
   TMO_c0664  789653 ..  789674 -  -2.1  -3.05844   TGGGCTATCTCAAGA           CCCCGCTCG GCCA CGACCAGGC            GACGGTCGACACCTG  41 404
        iclR  782931 ..  782943 -  -9.1  -3.53012   CGGTGGCGGCGGAAA                CCGGA CTT TCCGG                CGCCACGCTGGTCCA  61 499
   TMO_c0655  781438 ..  781450 -  -5.5  -4.15044   TCGGCCTCGAAGAAA                TCGGC CGG ACCGA                AAAAGCCGACATTGT  66 381
   TMO_c0643  765779 ..  765835 - -10.2  -3.53224   CATCGCGCCTTCAAA GCCTGGACCG-GCAGCACGCCGGG-TGCC TATC GCCAGCCCGGCG-GCGGCGCGG-CC-GGC GGGGAGAGCGCCGCC  65 42
   TMO_c0641  763495 ..  763524 - -14.9  -3.74693   GTGCATTTCACCAAA       GGCGCCGGCGAGG TGTT CACCGCCGGCACC        TGCGAATGGGTCAAC  88 351
        gpsA NONE
   TMO_c0634 NONE
        ggpS  754207 ..  754253 - -26.4  -4.08216   TCACCCGGGCGAAAA CACGCCCCGCCTGCCCTGGCCG AAA CGGGCCGGGCTGGCGGGGCGGG GGACAGGATATATCC 100 132
        pdxJ  753365 ..  753376 -  -3.6  -2.61264   TCTTCGACGTATAAG                CCGC GGGG GCAG                 ATCGCGCAATGGTAG  39 46
   TMO_c0630  751020 ..  751069 - -10.7  -3.14564   CGACGCCCGGATCAA GGCCGAGACCATGCACACCCA TTGGGTGC CGGGGGTGAACAATCTCGGCC AGTTCGGCCGCTGGG  64 154
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD  739084 ..  739111 -   -12  -4.06562   AATGCCAATGAGAAA        GAGGACGCCCAC CAGA ATGAGCGTCCCC         GTCCTGCGGCCGCGC  84 108
   TMO_c0621  738381 ..  738403 - -12.6  -4.08692   GAATGGGGGCGAAAA           TGGGCGGCCC GAC AGGCCGCCCT           CAGGCGCGCCGCCGC  85 25
   TMO_c0620 NONE
   TMO_c0619 NONE
        yyaK  735217 ..  735253 -  -2.1  -3.80133   CATTGCGACAAAACA    GGTAGCGGTATAATCGC CCA GCAATCTCACCCCCTCC    TCCCCCAAACCCCAA  53 15
   TMO_c0617  734355 ..  734372 -  -4.8  -2.89177   ATCGCATACACGAGA             TGCCCG CCACGT CGGACA              GTTCTATCATTGCTC  45 180
   TMO_c0616  732399 ..  732410 -  -4.4  -3.51708   GACGTTCCAAAGGAA                GATG CGAG CATC                 AATGTGCTCCAGCAT  49 376
   TMO_c0613  730926 ..  730938 -  -9.1  -2.71924   CACGGTGGGTCAAAG                CCAGC GAG GCTGG                GTGGCAATTTGCAGA  56 399
   TMO_c0601  673346 ..  673371 -  -8.3  -3.65425   GTGACATAGGGGAAA         TCCAT-CGCCGG CAG CTGGCGGATGGA         CAGATGGTTGAGCGC  65 121
   TMO_c0600  670308 ..  670341 -  -8.7  -2.87881   GAATTCCCGGAGACA     TCCGGTTCCGCGGGCG GTA CGCCTCCGG-ACCGGC     CTCCACCGGCAGAGC  55 58
   TMO_c0599  669554 ..  669572 -  -7.3  -2.73364   GGTCGACGGCAATCA             CGACGCC TTGGT GGCGGCG             GGCTTGGCCTCGGTC  51 4
   TMO_c0598  669140 ..  669169 -  -4.9  -3.53012   GTCTTGGGCGGGAAA       GTCGTGCCCGGGCC TCA GACCCGGGAA-GAG       GAGCGCGGCGTGCCC  53 71
        yojI NONE
        phbA  665513 ..  665523 -  -2.4   -3.1505   ATGATCGGCTATGAA                 CTGG CCG CCCG                 GCTGGTGGGTGAGGC  43 477
        ybaL  660021 ..  660031 -  -4.6  -3.15579   GGAAGCGGTGATCAA                 GACC ACA GGCC                 AGGGGCTGTCGCAGA  47 221
   TMO_c0589  654445 ..  654460 -    -4  -2.63102   ACCATCGCCAGACTA              TGCCGGA TCT TCCGG-A              TATTCAACCTGTAGT  41 95
        fdxB  653887 ..  653909 - -18.4  -4.13767   CCGGCCATGCGAAAA           CGCCGCCGGC AGA ACCGGCGGCG           TCCTCAAGATATCGA 100 63
   TMO_c0587 NONE
        mnmA  651835 ..  651865 -  -6.1  -3.53012   CCGCCCGGGGGCAAA      CCGCTGTCAACCTG CCGT CAGG-CGGCAGCGA       CCTGCCTGTCGACAG  55 12
   TMO_c0585  650980 ..  651020 -   -14  -3.03124   CCCGATGGCGGAACA GGGGGTGCGCCGCGCCC TGCTGATC GGACGTGGCG-ACCCCC  TGCACCTGGTGTCGA  69 140
   TMO_c0581  646261 ..  646290 - -13.6  -5.65496   GATCAAAAAGAAAAA       GGCCTGACCAGC AGACAA GCCGGTCAGACC        TTTTTCCGATCACAC 100 209
   TMO_c0575 NONE
   TMO_c0574  641674 ..  641700 -  -8.7  -2.70932   CGCGCGGCCGAAGGA        CGCAGCCCCGAC CTTG GTCGGGG-TGAG         ATCTGATACAGGGCA  53 142
        proP  639706 ..  639735 - -20.9  -2.55351   GGTCTGCATATGAAT       TGAAACGGGCAGC CGAA GCTGCCCGTTTCA        TGATACCCCATTCGC 100 79
        agmR  638488 ..  638505 - -14.1  -3.64703   TGCCGGTGAGCGAAA             GCCGCGC CCTG GCGCGGC              GCGTGGCACCAGAGA  78 463
        fabG  634226 ..  634249 -  -5.2  -3.84514   AGCTGAACCACCAAA          GCCTGATCAG ACCG CCGACCAGCC           GCCATCGACCAGATG  60 8
   TMO_c0562  625487 ..  625529 -    -4  -3.92522   GTCGAATGCGATAAA GTTCACGCCGGCAGGCGGC CATATC ACCGTCAGCCTGCGC-AAC ACCACCCTGCCCCAT  58 356
        efeU NONE
   TMO_c0558  614937 ..  614950 -  -3.7  -2.53995   AGTCATCTCAACTCA               TCCCG ATCA CGGGG                GGCAGCTTGCCCAGC  41 4
        ycdB NONE
   TMO_c0556  612607 ..  612628 -  -4.3  -2.94924   CCGGCAGCGACAAAG           GTCCGGG CCAGGATC CCCGGGC            GACGGGCTGGGGGCG  44 150
   TMO_c0555 NONE
   TMO_c0554  611047 ..  611066 -    -7  -3.09492   TTTTCAATCGCAATA            TGGGCGCG CCCT CACGCCCG             GTCGATCACCATGGC  51 17
        tdhA  608444 ..  608456 -  -4.8  -3.40403   GCTGGCGGATCAGAA                GGTG TAGGC CACC                GCCGCCTTCACGCTG  51 7
   TMO_c0550 NONE
   TMO_c0549  603766 ..  603804 -  -9.5  -3.59738   CACGAGAGGCCGAAA   TCGCCCGGCTGGTGGCG GATGG CGCCACCAACAAGATGA   TCGCCCGCCAGCTCG  67 131
   TMO_c0547  602203 ..  602221 - -11.6  -3.33261   CGCCAATCTCGACAA             GGTGCCCG AGG CGGGCGCC             CTGGTCACCATCGGT  66 233
   TMO_c0544  599680 ..  599705 -  -8.1  -4.10657   GCAGACCGCCGAAAA         GACCCCGCGCG ACGA CCCGCCGGGCC          CCTGGGACCGCCCCG  73 363
        ywnB  598776 ..  598788 - -10.5  -3.05844   GGGTCCAGCGCAATA                CCGGC CTG GCCGG                CCAGGCGGCGGATGG  63 112
   TMO_c0540 NONE
   TMO_c0539 NONE
   TMO_c0537  593627 ..  593639 - -10.5  -3.04792   CGACCACGGTCAACA                CCGGC ACG GCCGG                CGGCGGGCGTACGGT  59 85
        trpI  590148 ..  590159 -  -2.2  -3.61398   GCCGGTGTTCAACAA                TGCC GGCC AGCA                 CTGGAACCACATCAT  50 365
        ydaM  585408 ..  585422 -  -5.6  -2.87468   GCCGATGACACGACA               CCGGGT TCA ACCCGC               CTCAACGCGATTCCG  47 17
   TMO_c0529 NONE
        dctA  579320 ..  579378 - -13.9  -3.15324   CACCCCCACCAAAAG CTGCGGCCCCGCCCG-GCGCCGTCCA-CG TCCCC CGACGGATGGCGCCCCGGCGGGGCCGC-- TTGCCCCCTTCCCCC  76 66
   TMO_c0519  571543 ..  571573 - -11.3  -2.70932   TTTCTCTGTGAAGGA      TCATCCCCCATTGG GCAA CCAATGGGGGA-AA       TTCCTCATCAATACA  62 188
   TMO_c0518 NONE
   TMO_c0517  567393 ..  567420 -  -2.1  -2.81702   GAATACCATCAACCA        CATGAAA-CGGA CATCC TCGGCTTTCATG        GCGCGCCCTCATCCT  40 34
   TMO_c0516  567047 ..  567105 - -21.4  -3.01791   ACCTCGCTCGCAACA GATTGATCCTGCTGTGATTTCCGC-CGG GAATG CCGCGCCGAAATCACAGCAGGACCA-TC TGATTGGTGCCGAGG 100 10
   TMO_c0515  564374 ..  564387 -  -5.9  -3.05463   ATGCGCCGCACGGAA               CCGGC CGAT GCCGA                TGCCCTGGCTCAGTT  48 525
        mcp3  561620 ..  561663 -  -8.3  -3.99898   TAATGAATCGATAAA TGGCGAGACAGAGC--TGACC ACAA GATCATAGCACTATCTCGCCA TTCATTACTTCAGAT  72 100
   TMO_c0510  559751 ..  559779 - -12.3  -4.85782   TGGCCCAAAAAGAAA        CTGGCGGGCCTTA TCG CAGGGCCCGCCGG        ATCCGGAATCGAAGA 100 86
   TMO_c0509  557808 ..  557841 -  -8.1   -3.8512   CAGCTATGATAAGAA     GCCGCTGGACCAGGAT TTC ACCCTGGTCT-GCCGC     CGCTTCGCCCATATC  67 103
        dgdR  554825 ..  554853 - -13.8  -3.65529   ACACCGCCACCGAAA       CCGCGCTCGCGGC AACC GCCGCG-GCGAGG        GTGGTCGGCGAGGCC  78 265
   TMO_c0500  548759 ..  548775 -  -5.7  -2.62396   GAGGGGCGCAGACGA              TCAGCCG GCG CGGCCGC              GGAGCGCGGGCGACA  45 9
        ssuA NONE
   TMO_c0498 NONE
   TMO_c0497 NONE
   TMO_c0496  545519 ..  545540 -  -7.2  -4.55697   ATGGCCACAAACAAA           GACGCGGG CGACAT CCCGCTTC            ACGTCCTGCGAAGCA  79 147
   TMO_c0495  545069 ..  545087 -    -3  -4.11216   CCGGGATGCCGAAAA             CCCGCTAC CTC ATTGCGGA             CAAGGGCTATGACGC  60 78
   TMO_c0493 NONE
        betB  541224 ..  541251 - -19.9  -4.58773   CGGACGAAACGAAAA        CCGCCGCAGCC GGGGCA GGCTGCGGCGG         TCGAGTCGGCTATGA 100 71
   TMO_c0491 NONE
   TMO_c0490  537754 ..  537770 -  -2.2  -3.28712   TGGGCCCGCCCAGAA              CGGC ATCTGTTGG GCCG              GCCCCACGCCCGACA  44 227
   TMO_c0488  536700 ..  536717 -  -9.8  -4.21194   GCTTACGATCCAAAA             CCCGCC TTACAT GGCGGG              TTTTGTGATTCCTGC  81 220
   TMO_c0487  535611 ..  535623 -  -4.7  -3.01712   CCCGCCCCCGCAACA                GCCCG GAT CGCGC                AGAGCGGGGACTGAT  46 287
   TMO_c0484  530439 ..  530469 - -13.9  -2.52623   CCCCCGTCACAACAC       CCCGCGCCCGCCC CCTTC GTGCGGGCGCAAG       CCGCCATTGAGGCGG  70 252
   TMO_c0483  528849 ..  528893 -    -7  -2.90496   TCGCGCGGCAAAGTA CCGGGCG-GGCGCCCGCGAAA GAGC TTCCGAGGACATCGCGGCCGG CCGCGGGGAGGCCAG  50 446
        rpmJ  528159 ..  528186 - -24.2   -4.2349   GCTTCAGACGCAAAA        CGGCCGCCGTCC CGAA GGACGGCGGCCG         TTTCGAAAGCGTCCC 100 105
        glcD NONE
        glcE NONE
        glcF  523708 ..  523718 -  -3.2  -4.61231   CCACATGGCTAAAAA                 GGTC GAC AACC                 GGAAGGCCCTCCCCT  72 259
        ydcR  517862 ..  517873 -  -3.6  -3.86283   CGAACTCAGATTAAA                GCCG CTTA CAGC                 TTGCTCAAAGCCATG  56 195
        nrdZ  515400 ..  515415 -    -4  -4.11751   AGCAATCTCTCAAAA              TTGTCC TCAG AGACAA               TCTCGCGCCACTCAC  62 146
   TMO_c0470  514470 ..  514485 -  -4.8  -4.09739   CCAACCTCCGCAAAA              TTCTAT AGAG ATAGAA               GCCCTTGCGGTCATT  64 45
   TMO_c0468  512575 ..  512606 -  -4.2  -3.55444   GCCCGATCCGGCAAA      CATGCAGGCCTTCG TCAC CGACGGCCGCCAGG       GCGTCAGCTATCGCC  51 268
        glnH  509397 ..  509411 -  -3.4  -2.87132   CGGCCGCCTCAGAGA               TCCGCC GGC AGCGGT               GCGCCCAGCCAGGTT  41 4
        yecS NONE
   TMO_c0462 NONE
        glnQ  507099 ..  507110 -  -3.6  -3.15579   GGAACTTGCGACGAA                GCGC CGCA ACGC                 CTGCAGAATATTCAG  43 112
        yoaH  505429 ..  505454 - -18.3  -5.28942   CACCCCAAAGAAAAA         CCGCCGGAGAG TCCC CTCCCCGGCGG          CATTCCGTCCGTTCC 100 61
   TMO_c0459  504519 ..  504536 -  -4.9  -3.55444   CCCTTATCTTTCAAA             CACCTGCA TTT TGCAG-TG             ACGTCACACACATAC  53 95
   TMO_c0457  502623 ..  502641 -  -8.2  -3.55444   GCTCCACCCCCGAAA             GCTTCGAA GAT TTCGAAAC             CGCAGCCCGCAGCCT  63 248
        acdS  501012 ..  501026 -  -2.7  -4.65895   TGCCGCACCGAAAAA               CCGGC CCTGC GCCGC               TTCCCCGACGACCAC  71 158
   TMO_c0444  486803 ..  486831 - -13.8  -2.64155   CCCGCCTGAAATCGA        CGGCCGCACGCT GGCCG AGCGCGCCGCCG        GCCTCGGCGTGCTGA  66 225
   TMO_c0442  483872 ..  483893 - -15.1  -5.24129   TCCGCGCATAAAAAA           GGGGCCGCC CGCG GGCGACCCC            TCTTCAGTCTGCCGG 100 66
   TMO_c0437 NONE
   TMO_c0436  474045 ..  474064 -  -7.8  -3.14211   ATTCCGTTTCATGAA            CGAGGGTC CCGG GACCATCG             GATCTGATGCGATCG  55 43
        rsmA NONE
   TMO_c0434  472432 ..  472490 -  -3.7  -2.78463   ACCGCTTCGATCAGA TCCGCCGGCCAGGGAGGCATGCGGGCATG CCG CATGC-CGGTCGCCCTCCTAGCCGA-AGC GGACCTGTGTCAGGT  42 15
   TMO_c0433  471101 ..  471111 -  -8.2   -2.7185   AGGACGGCGGAAGGA                 CGGC TCA GCCG                 CCCGGCCGGAGCTTC  53 19
   TMO_c0432 NONE
        braF NONE
        braG  467609 ..  467623 -  -5.6  -3.01791   AGGCCCGGGCGAACA               TTCCGC AGG GCGGTA               TCGGCCTCAACCGTG  48 62
   TMO_c0429  466210 ..  466237 - -25.6  -4.26188   GCCAGACATGCAAAA        CCGCCCGGCGGG TCTC CCCGCCGGGCGG         TTCCGGATCAGCCCG 100 57
   TMO_c0428 NONE
   TMO_c0427 NONE
   TMO_c0426  464802 ..  464812 -  -2.4  -2.50816   GCCCGAGGGATCAAC                 CGGC GGG GTCG                 TCTCCCGGTTCCCCC  37 10
        yjbB  463008 ..  463040 - -16.4  -3.76413   CCGGAAAAGCTGAAA     CCGC-GCGGCTGACGG CGG CCGTCA-CCGCCGCGG     TGGTGACGGTTCTGT  91 14
        yebE NONE
   TMO_c0421 NONE
        yafC  456731 ..  456750 -  -3.4  -3.25823   CGCCGGCGACATGAA            CGAGACCG ATTT CGGCACCG             GCTACGACATGATCT  47 363
   TMO_c0402  438328 ..  438340 -  -3.3  -3.61178   CCGATCCATCCGAAA                TCACG CAG CGAGA                ATGCCCCGCGGGTTC  51 40
   TMO_c0400  436615 ..  436640 - -21.9  -3.23216   CGTCACCATGACCAA         CCTCGCCCGCC TTCA GGCGGGCGAGG          TGATCCTGCATCCGG  93 84
   TMO_c0398  434849 ..  434881 - -26.4  -2.69151   CGCCCCCACAGACGA      CGACGGGGCGGTGG ACTGA CCACCGCCCCGTCG      GGCAGACATGCCGGA 100 70
   TMO_c0396  432962 ..  432985 - -19.6  -5.60993   CCCCGCACAAAAAAA          GCCCCCGGTC TTGC GACCGGGGGC           GGTGTGCGGAACGGG 100 152
        ydeL  430703 ..  430747 - -13.3   -3.1505   ATGACGCCGGATCAA CTGACCCTGACGGGCCTGCCC GCC GGGCTGATCCGCCTGGGCCTG GGCTTCGAGGATCCG  72 89
        ybfI NONE
   TMO_c0391  427573 ..  427588 -  -4.6  -2.77344   GCATCCGGGAACAAG              CCGGTG TCAC CATCGG               TCGATTGCCGGGTCA  44 38
   TMO_c0390  427007 ..  427035 -  -2.3  -3.95073   CCCCATACCGATAAA        GCCTCCCCA TTTCCAGGGTC CGGGGCGGC        ATCAGGCCAGCTGCC  57 27
   TMO_c0389  424259 ..  424303 - -13.3  -2.51313   AGAGGGAGAAGACAT GACGGGCCGTTGGGGGCCGAC ATG GCCGGCCCCCGGATGACCGTC TTCCAAAAACATCAG  67 151
   TMO_c0388 NONE
   TMO_c0387  421647 ..  421674 -  -2.5  -2.62171   CATATCCTGAAACAG        GGCGATGGGGC GATCAG GCGTCGTCGCC         GATCACGGCCGGCTC  38 11
   TMO_c0386  420720 ..  420748 -  -3.1  -2.87132   CTTCGGTCGGATACA       GGCC-CGCGGAT CAGATC ATCCGCTCGACC        GTAATCCCCTCGGGC  41 7
   TMO_c0385 NONE
   TMO_c0384 NONE
   TMO_c0383  418496 ..  418531 -  -8.4  -4.29396   AAGCATGGAGCAAAA    CCCCATTGAACTTCAG GTAG CTGAAATTCAAAGGAA     ATTCACGCCGCGAAC  77 98
        mmsA  414614 ..  414642 -  -6.5  -2.66634   GATGCGATGAGATGA        GTCTACACCCGTG CCG CACGGGCGGCGGC        ATCGGATCTGCCGTG  48 46
        hyuC  413300 ..  413312 -  -3.3  -5.00884   ACGTCCTTGAAAAAA                CCCTG TAT CAGGC                CGCGTCGGCGGCAGC  81 20
        yeiT NONE
        yeiA  410362 ..  410390 -  -5.1  -2.57132   GCCTGTTCTTATAAT        CTGCACCGGTTTC GGG GAAGCCGGCCCCG        TTCTTCGGCCTTCAC  43 71
        pucI NONE
   TMO_c0375  407103 ..  407135 - -23.5   -4.3467   ACCGTCAGATGAAAA      GGCCCCGGCAGGG CGTGCAT CCCTGCCGGGGCC      GAAGACGGGCCGGAT 100 58
   TMO_c0374  404553 ..  404603 - -12.3  -3.04144   CCTTGAGCGGGAACA GCCGGGCGACGGCATCCTCTGCC GGGAT GGCGACGGCCGCGACCGCCCGGC CCTGCATGCGGAGAC  66 95
   TMO_c0371  401650 ..  401665 -  -7.5  -3.28924   CATGGCGTGGCAGAA              GCCGG GCTGAT CCGGC               GTGGTCACCCCCGCC  57 30
        lcfA  397907 ..  397919 -  -4.1  -3.34013   GAGTGCCTCAAGGAA                CTCGA TAT TCGAA                AAACTTACATGGATA  47 426
   TMO_c0356  386556 ..  386569 -  -4.5  -3.14848   GCCTTCCAGGAAAAT               CTGGGC ATC GCCC-G               CGGCATGTTGAGCAC  47 358
        ygaY  384844 ..  384875 -  -9.2  -3.54424   CCCTATGGCCTGAAA      GGCGGCCAGCCCGG CGCC CCGGCCCGGGCGAC       GCTGGTGCGGACCGA  63 269
   TMO_c0344 NONE
   TMO_c0343  370541 ..  370553 -  -3.3  -3.65425   TCCACACACCCCAAA                CGGGT TCA AACCG                AAGATCCGCGCCCCG  51 53
   TMO_c0333  359403 ..  359413 -  -6.8  -3.14878   GTGCCGAAGCGAAGA                 CAGC ACG GCTG                 CGCGACCGGCTGGAG  50 284
   TMO_c0331 NONE
   TMO_c0330 NONE
   TMO_c0329 NONE
   TMO_c0328  354927 ..  354970 - -12.3  -3.05384   CCCCCGGCGACGGAA TTCGAACGGGCGCCGCCTC TTCATC GAGGCGGCGCCCGTTTTCG TTCCACAGGCGGCAG  69 430
   TMO_c0324 NONE
        ytcJ  351234 ..  351266 - -15.5  -3.49475   CTGAGGGGCACACAA      GGGCTGACGCCGACC GCG GTCCGGCGTCAGACC      GCCCAGCAGCCGCAG  90 19
        ttuD NONE
   TMO_c0318  347492 ..  347504 -  -3.3   -3.0353   CTCTCGATAAAGAAT                CGCGA CCA TTGCG                GAGGTATCCACAATC  42 39
   TMO_c0317  346789 ..  346802 -  -9.5  -3.18681   GCCCAATCCGATGAA               CGGCC GGCT GGCCG                CCGCCGGCATCACCG  60 337
        hipO NONE
   TMO_c0311  337008 ..  337027 -  -4.8  -3.61715   GACGTTCTGGAAGAA            CCGGGCCG GGTG CGGGTCGG             CCGGCATATGGTGCG  54 282
        zraR  330926 ..  330968 - -24.2  -3.07575   AAAACGGGCACGGAA GCACTCGGCCCGTCAGGCGC GCT ACGCCTGACGGGCCGAACGG ACGGATGCCGGCGCA 100 82
   TMO_c0304  329844 ..  329855 -  -7.2  -2.83164   TGACCCACGATCACA                GGCC GGCA GGCC                 GGTCGGCAGCAGCCC  49 9
   TMO_c0303  325936 ..  325968 - -20.6  -4.17089   TTGAAACTGCGAAAA      TCCCCGGCCCCGAC GCAAA GCCGGGACCGGGGA      CCATCTGTCCGAACC 100 42
   TMO_c0302 NONE
        cqsS  323332 ..  323362 -  -4.5  -3.04517   AGTTCCGTGTAAAAT       GCCCTCTCCGCCG GTCGT CAGCTGCGACGGC       GAAGTTCGGTCGGAT  45 12
   TMO_c0300  322175 ..  322201 -  -5.7  -3.18264   GCCTTCATGTACGAA         CTGGAGCCCGA CCATC CCGGGCTGCTG         AAGGCGGGGTTCGCC  50 401
   TMO_c0294  317683 ..  317693 -  -8.2  -3.14211   ATGCGGCTCGACGAA                 GCGG CGG CCGC                 AACCGGCCGCGATGC  56 207
        yajO  308972 ..  309005 - -20.3  -4.62069   TCGCCACGGCAAAAA     GCGCCACGAGGGCCC CGGA GGGCCCTCGCGACAC      GGATGGTTCAGAGGT 100 55
        ydeR  307449 ..  307464 -  -7.5  -3.29461   GAAGCGGCTGCACAA              GGCGG TCTATG CCGCC               GCCCTGCTCGGCGCC  55 373
   TMO_c0283  305973 ..  305997 -  -7.7   -2.9155   CGGGCGAAGAGGACA          CCGTCGCCCGG GCC CTGGCCGACAG          CATGCGGCCGGGGCG  50 259
        yfeJ  303350 ..  303392 - -20.6  -3.48668   ACGACGACAGCAGAA CGCGACCCGCACCAGCCACC CGG AGTGGCTGGTGCAAGCCGCC ATTGAGGCGGCGGCC 100 358
        glyA  301901 ..  301924 - -16.7  -5.14965   ACTGTCATGAAAAAA          GCCGCCCGG TTGTCG CCGGGCGGC           TCCAGTGGCGTCGCG 100 103
   TMO_c0279 NONE
   TMO_c0278  300178 ..  300224 - -25.9  -3.84451   GGGGGGAAACGGAAA GGCCGGCCGGGG-GCTGCGTGC GGGG GTACGCAGCACCCCGGCCGGCG GCAGCGGGATCGCGA 100 52
        thcD  298815 ..  298872 -   -17  -5.02074   CGAGGGGCTAAAAAA CGACTC-TCGAACGGCGCCCCCACGGG GGCAG CCAATGGGGGCGCCGTCCGATGCTTCA GGCCGGAACCGCCAC 100 23
        hxlR NONE
        ydcN  291143 ..  291154 -  -7.2  -3.18264   CGGGCGATGCATGAA                GCGC TGCA GCGC                 TCCACCCGCCTTGCC  53 330
        djlA  276753 ..  276780 -    -4  -3.19304   CGGAAAATACATAGA        GAATCCCGCGGC CTCC GCCACCGATTTC         CGGAAGTTTACGGCA  47 93
   TMO_c0254  275526 ..  275536 -  -2.4  -2.77899   CTTCCGGACGAAGGA                 CGGG GAT CGCG                 GCATGGCCGCTGGAG  38 175
        hfaC NONE
        eamA NONE
        ampD  271880 ..  271895 -  -3.2  -3.61398   CCGGCCGGTCAAGAA              CAGGCT GCTC AGTCTG               CGCGCGGATCCCGGG  51 18
        mraZ NONE
        mraW NONE
   TMO_c0248 NONE
        penA NONE
        murE  265461 ..  265483 -  -7.6  -2.87931   TCGATGGTCCAGAGA           GGCCGCGTGA CGT TCATGCCGCC           CCTCCCCCGATCACG  52 16
        murF  263980 ..  264020 -  -7.4  -4.07687   ATGCGTGCTCCAAAA CCGTGTCG-GCCACCGGCA GCCC TGCCGGTGCCGCGGCCCGT  TAACCCTTGTCCGTA  71 25
        mraY NONE
        murD NONE
        ftsW NONE
        murG NONE
        murC NONE
        murB NONE
   TMO_c0238 NONE
        ftsQ NONE
        ftsA NONE
        ftsZ  251557 ..  251591 - -26.5  -3.72893   CACCCCTGCATGAAA     GCGCCGGCCCGTGCC GCAAG GGCACGAGCCGGCGC     CCGCCTGCGCGATGC 100 220
        lpxC  250399 ..  250437 -   -27  -2.94747   CCATCCGACGATACA   TCAAAGGCCCGCATCGTA TCT CACGATGCGGGCCTTTGA   TCGTTTCCGGCTGAC 100 56
   TMO_c0232 NONE
        recN NONE
        ligA NONE
   TMO_c0229 NONE
   TMO_c0228  243109 ..  243162 - -23.1  -4.57073   CAGGCCGTCGAAAAA TTCCGGGGGACGGCTCCGGCCGCGCA TGA TG-GCGGGCGGGTCCGTCCCCCGGAT GCAGGTATGTAATGG 100 52
        hcaE  241633 ..  241649 -    -5  -2.62184   CTGGTCGTCATATCA              GTGCGG TGTCG CCGCGC              CGGCTCAGGACCCGG  43 74
   TMO_c0226 NONE
   TMO_c0225 NONE
        paaA  238735 ..  238780 - -14.8  -3.36785   GTATACGTCAATCAA GGAGCGCACGACATGATCCGGCC ATC GGCCGG--CA-GCCGCGCGCCCC GTCGGAAACCGCCGA  84 44
   TMO_c0223  237456 ..  237478 - -15.6  -3.61398   TGTCGTCGTGAATAA           GGGCTGACCC GAC GGATCAGCCC           CTCTCATTCGTCTGG  90 47
        ybiH NONE
   TMO_c0221 NONE
        ybhF NONE
   TMO_c0219 NONE
        ybhS NONE
        ybhR  231620 ..  231648 -  -8.3  -2.71011   ACGTGCCTCCAATTA        CTGAACGATATTA AAT TAATTTCATTCAG        TAATGAGGTCAAGCC  53 57
   TMO_c0216 NONE
   TMO_c0215  229643 ..  229668 -  -6.1   -3.3344   ATGGAAGGCCCAGAA         CGCCGACGTCAG CCG CC-ACACCGGCG         GGGACCTCGCGGCGG  52 388
        ycaN  222741 ..  222757 -  -2.1   -4.0031   AGCCCGACTAAATAA              TTGTGCC GGC GGCACGC              AGCGCATCGATGAAG  57 1
   TMO_c0208 NONE
   TMO_c0207  221157 ..  221170 -  -2.3  -3.29144   CGACCGGGTCTATAA               CGGCA TCAA TGCCT                CGATCGATCGCCACA  45 396
   TMO_c0198  212250 ..  212267 - -11.3  -2.61888   AAATTTGTCAAACAT             CGTCCAG TCTT CTGGACG              CAAAAACCATGTTAA  62 449
   TMO_c0192 NONE
   TMO_c0191  203787 ..  203804 - -10.5  -3.72576   GTCGGCCGGATGAAA             GCCGCCA TGAC CGGCGGC              TCAGACGCCGATGCC  71 385
   TMO_c0188  202346 ..  202366 -  -3.9  -3.07013   GATGTCGCCAAGAGA            CGGCCGT CTGTCTC ACGGCCT            ACCTATCCGGTCGGA  45 24
        asnO  200241 ..  200267 -  -7.2  -2.78384   TTGGCGTCGACCAGA         CCGCCGACGTCA TAT TGACACTGGCAG         AAAGCTCACCGTTTC  48 150
   TMO_c0186  199015 ..  199033 -  -2.2  -3.85509   GGAACATAACCGAAA             CGCGGCCG CGA CGACAGCC             ATCGGCACGCCTGCC  55 104
        uvrD NONE
        prmA NONE
   TMO_c0183  193335 ..  193355 -  -6.7  -3.28712   CCGGGCGGCCGAGAA            CCGCGCCCG TTT CGGGCAGAG            CCGCCTTCAGCGCGA  52 209
   TMO_c0181  191188 ..  191246 - -22.8  -3.13522   ACCGGGGTATGAAGA CGGACGACACACAAAACGGCCGCAGTCGG GAAA CCGGCTGCGGCCGTTTTGTGTGTCG---G GGATCAGGAGGCGCC 100 29
   TMO_c0179 NONE
        ispE  187311 ..  187324 -  -2.3  -3.15574   GGAACCGGAGGAAGA               CCAGG ATTT CCTGC                GTGAGCGTCCGGACC  43 366
   TMO_c0176  186129 ..  186158 -  -5.5  -4.08692   GAAGCTCGTCGAAAA       GCGG-CCCGCCTGG AAG CCCGTCGGCTCCGC       GTGCGACTTCTGCTA  66 131
   TMO_c0174  179570 ..  179604 -  -3.5  -3.28712   GCGGTTTGGGCAGAA    GCCCCGCTCAGACGGC TAGA ACCGT-TCAGAGAGGC     CCGCGCGGCCGGCGA  45 6
        ywmD  177738 ..  177779 - -12.3  -3.73224   TGACGGCCGAGGAAA TCCGGGCCGAGATCACC GCCGGCCG GGTGATCGCGGCCGAGA  TCGCGCTGGGGTTCG  78 293
   TMO_c0166  170382 ..  170414 - -10.6  -2.83715   GTGATGACGATGACA     GAGGGCGTGGCGTCA GCCG CGAC-CCACGGCCTC      GGCTGCGCGGCGGGC  60 5
        aidB NONE
        nudF NONE
   TMO_c0163 NONE
        nudL  166509 ..  166540 -  -2.2  -2.81173   AGGAAGGGCAGGATA      TAGGTCAGCAGGAT CCGC ATCGCCCTGCCCTA       GCCCGCCCCGGCCGC  40 23
   TMO_c0161 NONE
   TMO_c0160  164702 ..  164722 -  -3.9  -2.79183   TGTACCGCCACGACA            TGCCGGT GCTCTAT ACCGGCC            GTATCCTCCGGCGCT  40 162
   TMO_c0158 NONE
   TMO_c0157  162475 ..  162489 -  -5.6  -3.60627   CCACCGCATGCGAAA               TGGCCC TGA GGCCCA               ACGCGCTCACCTGGC  57 86
        petA NONE
        petB NONE
   TMO_c0152  157926 ..  157969 - -23.2  -3.54307   AACAGGGGCCCGAAA CGCAACGGGGGCCGCCCCTC CGCA AAAGGGCGACCCCCGTTTCG ATCCGGTCGGATCAG 100 51
        mtnP NONE
        mtnA  155584 ..  155618 -  -3.4  -2.89742   TTCAATTCGCAGACA    GGCCG-GGTCGGGTG CGCGGT CACTCGGCCGCGGCA     CGCTCGGGATAAAGG  41 10
        yuxG  153464 ..  153483 -   -15  -3.66378   GACACGGCATCGAAA            GAGGGGGC AGCC GCCCCCTC             TTCTGCTGTCGGTCC  87 44
   TMO_c0147  151433 ..  151458 -  -6.7  -4.13767   TCGGCCATTTCAAAA         CCTCCGTTCGC CTTT GCGACCGATGG          CATGGCTTGGCATCA  68 212
   TMO_c0146  150973 ..  150992 - -12.1  -2.78384   CTGTCGGTGACCAGA            CCGGGCG GCGATG CGCCCGG             CGCCGGATCACTTCA  65 33
        csaA  150478 ..  150511 -  -2.3  -4.30576   GCGTCATCAGGAAAA     GCGCAGAACCGTGACG ATG CGACA-GGTTCAACTC     AGGCGGGCGCCGTCC  63 19
        yhcK  149552 ..  149571 -  -8.5  -3.28712   CTCGGGTGCTGACAA            GACCGGC TCTGCG GCCGGCC             GAGGTCAGTATCCGT  59 107
   TMO_c0143  149102 ..  149116 - -12.8  -3.06696   TCCGGCTGGAAGACA               GCCCGC TCG GCGGGC               TCAGGGTCGTGCTCG  66 58
        ilvE  145401 ..  145442 - -29.5  -4.07687   ACGGGGGCCCCAAAA GCGACACCGCCCGCCCCGG GGCT CCGGGACGGGCGGTGTCGA  TCGTCAGGCACACAA 100 67
        azoB  143987 ..  144014 - -19.8  -3.18054   CCCTACAACGCAATA        CGCCCGCTCCGG TTCC CCGGGGCGGGCG         CTGGTCTTAAGCCCT 100 60
        aatA  127805 ..  127844 - -18.6  -4.08216   TCATCCTCGGCAAAA  GCGA-ACCCCCCGGCCGCA GCG TGCGACCGGGGGGCGTCGT  CAGAACCGGATCCTG 100 55
        yedY  126213 ..  126229 -  -5.8  -3.24021   GTGCGAAAGACGGAA             GC-GGCC GACG GGCCTGC              GCAACGGTTCCGCAA  51 457
   TMO_c0122 NONE
   TMO_c0121  122868 ..  122886 -  -5.2  -2.87132   GGCTCCTCGGACATA             TGCCGCAT CGC ATGCGACG             TCGGCGCGTTACGGT  45 34
   TMO_c0120 NONE
   TMO_c0119 NONE
   TMO_c0118  120573 ..  120621 -  -7.4  -3.27525   TCTGGTCAAACGCAA GCTGATGACCATCCGGCACGGCA TCTA TGCCTCGCCGGATTA-CGTCAAC CGCCAGGGCATGCCC  55 465
   TMO_c0114  116884 ..  116909 - -19.1  -4.54727   TTCCGCAAACGAAAA         CGGCCGCTTTC ACCC GAAAGCGGCCG          TTCGGATCGTTCTGC 100 117
        abrB  115753 ..  115770 -  -6.9  -3.05596   GATCCCGCCAGTGAA             CCCTAGC TTCG GCGAGGG              CTCGGCGGGATTCAA  51 51
   TMO_c0112  113936 ..  113975 -   -20  -3.06815   ACGCCGCCGAAGACA  TGAAGGGCCGGCCCTCCC GAGC GGAAGGGCCGGCCTTTCG   TCTTGCAGAATGCCT 100 46
   TMO_c0108 NONE
        dnaG  105742 ..  105752 -  -6.8  -3.85698   TCCCCCGCTCAGAAA                 CGCA CGC TGCG                 CCTTGATTCCGATGC  64 156
        rpoD  103558 ..  103598 - -29.1  -3.53761   GAAGGCTGGCGGAAA  TGACACGACCGCCGCCGGA AGG CCCGGCGGCGGTCGTGTCG  TGTCGTCGATGCCGG 100 50
   TMO_c0105 NONE
   TMO_c0104  101395 ..  101418 - -13.8  -4.17701   CGCATAAACGACAAA          GGCCGCTCTC CGGA GTGAGCGGCC           TTCCACAGGGCATGA  93 165
   TMO_c0103 NONE
        trpB   99598 ..   99613 -  -2.5   -3.4617   ATCAACACGAAGCAA              GTCGA AAGCGG CCGAC               AGAAAAAACCTGACC  47 501
   TMO_c0101   98308 ..   98321 -  -3.7  -2.86164   GCCGCAAGGATGACA               GGCCG GTAT CGGCG                CAAGCTTCACACAGC  43 118
   TMO_c0100   96225 ..   96242 - -10.5  -2.57564   CCAGCCCCTCAGAAG             CGCAGGC CCAG GCCCGCG              GTCACGGCGGTCTGC  58 1
   TMO_c0097   93810 ..   93828 -  -7.5  -3.67954   GAAAGACATTGCAAA             TGCAATC TCCGC GATTGCA             CATACAAGCTGGATA  63 44
   TMO_c0096 NONE
   TMO_c0095 NONE
   TMO_c0094 NONE
   TMO_c0093 NONE
   TMO_c0092   89888 ..   89924 -    -5  -3.14132   GCGGCGGTCGAGGAA   CAGCCGC-CGCGGCACG CTCC CGTGCCGATTGCCACTG    AACAGGAAGGCGTCG  47 199
   TMO_c0091   88503 ..   88519 -  -4.3  -2.95234   TCAACAAACCGAAAT              GAGCCGA CCC CCGGTTC              TGTGCGCGCTGGCGG  44 362
   TMO_c0090 NONE
   TMO_c0089   87065 ..   87086 -  -8.6  -3.34398   GTGGTGGTTGAAATA           CCCGTGCC TCGTTG GGCTCGGG            CGCGTGCTCGGATGG  60 50
         ssb   86395 ..   86406 -  -7.2   -4.0274   GGCAGCAGCAAACAA                GCCG CATG CGGC                 AGCGACCGCTTTCAC  67 216
        topB   84021 ..   84066 - -24.9  -3.21218   ACCGCTGACCACGAA GGGTCTCCCGGTGGCTCGTGCA GCC TGG-CAAGCCACCGGGAGACCC TTCGCAGAGGGCGGA 100 242
   TMO_c0085   82137 ..   82155 -  -6.7  -3.06796   GGGCACGCCACGCAA             CTCGCGA TCGCT TCGCAAG             AAGCCGCAAGGCCCG  51 173
        cadA   78429 ..   78439 -  -5.4  -3.01712   TGCGTCTTGCGAAGA                 GATG GTT CATC                 CATTGTTCATGCCGC  46 32
        lspA   77700 ..   77712 -  -3.3  -4.87291   CATTGGAACGAAAAA                GGCCA GCA TCGCC                GTGATGGACTTTCAT  78 255
   TMO_c0081   77243 ..   77271 - -14.6  -5.43866   GAACGCGGAAAAAAA        GAAAGCCCCGCA ATAAG TGCGGGGCTGTC        AGGAGGATGAGGCGA 100 48
   TMO_c0080   76253 ..   76288 -  -6.9  -5.10461   CTGACGGAAGAAAAA    TCGAGGGACATG-GCC GCGTG GACGCATGTCCCTCAT    GGGCAGTGAACAAAA  93 66
   TMO_c0079   75305 ..   75335 - -18.3  -3.19192   TCCTATGGAATTGAA       CCAGCCCGGCTCC TGGTG GGAGGCGGGCTGG       CATATGGGGGATAAA  93 68
   TMO_c0078   74979 ..   74994 - -10.4  -5.06414   TGCGGGCAAGAAAAA              GCCCCT CGAA AGGGGC               TGGAGGAATCAGGCT 100 34
   TMO_c0077   73778 ..   73803 -  -9.7  -4.14257   TGGAAGAATGAGAAA         GGCCTCCATCC GATG GGATGAAGGGC          CTGTAGTGCACGCGG  76 112
        merT NONE
        merP NONE
        merA   70723 ..   70738 -  -7.5  -2.59683   AGGGGATCGGACAAG              GCCGC GTAGAT GCGGC               GGTTGGCGCGGCTGT  50 69
        tnpA   69696 ..   69718 -  -8.4  -2.93723   CGGCGAGGAAGTACA           CGCCCTGATC CTT GACCAGGACA           ATGCGGCACTGATTG  56 73
   TMO_c0071   69400 ..   69418 - -11.6  -4.43307   GTGCGAACAAAAGAA             GGCCCCCG ATG CGGGGGCT             GCGAGGCGGTTGCCG  90 43
   TMO_c0070   68623 ..   68654 -  -9.4  -3.69354   GTTGATAAGGCGAAA      GC-ATCCGCCACCAG AGG CTGGTGGCCGCTCGC      GGAAGGATGCGGTGC  71 215
   TMO_c0069   67511 ..   67534 -   -16  -3.41126   TGAGAAATTCGACAA          CCGCGTGGCC GTGA GACCACGCGG           AACTCGGGGGATGAA  88 119
   TMO_c0068   66620 ..   66646 -  -3.5  -3.86202   GTGGATGAGAGGAAA         TGGCTTCGCCC GAGGT GGGCGAGGTCC         GCGTGGCATCACGCC  56 34
   TMO_c0067   65848 ..   65863 -  -8.2  -3.71848   CGGGTGGATGAAGAA              CACCGC GCAT GCGGCG               TCTGCGATCACGCAG  67 33
   TMO_c0066 NONE
   TMO_c0065   64601 ..   64635 - -17.8  -2.76046   TGAACGGGAACAGCA     CCGCCCGCTGGGGCAA GTA CTGCCCCAGGGGGTGG     AAGAAAACCGCTCAG  84 37
   TMO_c0064   63889 ..   63914 - -16.9  -2.77899   GGCGGGGATGAATGA         CGGAAGCACGC CAAG GCGTGCCTCCG          AGGGTGGGTCAAGCC  81 34
   TMO_c0063   62727 ..   62742 -  -6.1  -2.62616   CGATGTGGTACAGCA              GGACG GCAGCG CGTCC               GGTGGATCAGCGAAT  45 32
   TMO_c0062   62305 ..   62316 -  -5.8  -3.53012   GGCTCCTCCTTGAAA                GGCT ATTG AGCC                 ACGACACCCCTGGCG  55 87
   TMO_c0061   61867 ..   61907 - -12.6   -4.8622   TGCTCCAATGAAAAA TGGGGCATG-CACCACCCC CAGC GGGGCAATGGCATGCCCCG  TGGTGGGAAGGAAAT 100 101
   TMO_c0060   59538 ..   59553 - -11.8  -5.76949   GAGCGGCAAAAAAAA              CGGCCC CGAA GGGCCG               TAAGTGGAACGTGTC 100 39
   TMO_c0059 NONE
   TMO_c0058   58196 ..   58209 -  -3.7  -3.05384   GCTCCGGTCAGGGAA               TCGCC ACGC GGCGG                GTCTGGTTGCCGGCC  45 4
   TMO_c0057 NONE
   TMO_c0056   56773 ..   56786 -  -2.3  -3.28924   CACGGTCCTCGACAA               CGATC AGTG GCTCG                CCGGCACGCGAGGCC  44 105
   TMO_c0055   56236 ..   56257 - -10.8  -4.07124   CACCAGGCACAGAAA           CGCGGCGC CTGCAC ACGCCGCG            ACGGTGTATAGCTCC  78 89
   TMO_c0054 NONE
   TMO_c0053   53098 ..   53138 -  -3.8  -4.45738   GAGCTGAACAATAAA  TGCACCAAGTTGCGGTCG GCCGT CGAGCGTATCGCGGCGCA  ACATGCGGGTGCGCC  70 265
   TMO_c0045 NONE
   TMO_c0044 NONE
   TMO_c0043   44896 ..   44919 -  -7.4  -2.87132   TGCTGCTCGGACATA          CCGGCCTCGCT TAC AG-GATGCCGG          TGGCTTCGGTGAGCA  52 12
   TMO_c0042 NONE
   TMO_c0041 NONE
   TMO_c0040 NONE
   TMO_c0039 NONE
   TMO_c0038 NONE
   TMO_c0037   38037 ..   38061 -  -7.7  -2.65442   ACACGAGCCAGATCA          GCAGCAGCGCT ACC AGCACGGCGGC          CAACACCCAGGGCCA  50 134
   TMO_c0036   37274 ..   37288 -  -2.8  -3.81146   CTGGGGAACGAACAA               GGTG CATCCAT CACC               GCGGCAGCGGTGATC  54 115
   TMO_c0035   36663 ..   36682 -   -15  -5.63517   GCCGCAAAGAAAAAA            GCGGAGGC CGAA GCCTCCGC             GCTGATCAACGAAGC 100 51
   TMO_c0034 NONE
   TMO_c0033 NONE
   TMO_c0032 NONE
   TMO_c0031 NONE
   TMO_c0030   31732 ..   31743 -  -5.8  -3.01712   CTGCTGCTGCCAATA                CCTC TGAC GAGG                 ACGAGTGGCCTTTCA  48 138
   TMO_c0026   27871 ..   27882 -  -4.4  -4.18161   TACAAAGCCTCAAAA                CTTG AGGT CAAG                 CGATATCGACGTTCT  62 103
        bepF   26363 ..   26378 -  -3.2  -3.71848   CCTGTCCATGAAGAA              CTTGGA GAGG TCCATG               GGCTAATACCTTGAA  54 117
        bepE   25814 ..   25838 -  -9.1  -2.82635   ATGCGCAGCACGACA          GCGCGACGGCG GCA CGCCGGGACGC          CCGACTGCTTGGGAC  58 163
        yubM   24141 ..   24173 - -17.1  -4.08706   GCGCCACCACACAAA     GCGAAGCGCCCCGG TCGAGG CCGGGGCGCTT-GC      CTTCGGCGCGGGTCA  95 38
        pcoA   13764 ..   13777 -  -5.9  -3.06696   GCTGGGTTCAAGACA               CCACG ACTT CGCGG                AACATGCCGGCATCC  49 4
        copB   12517 ..   12545 -  -3.7  -3.61398   TCCCGGTGTCAAGAA        CCTGCACATCGAA GCC TGCGCCTTGCAGG        TGTGAGACCCAGTCC  53 230
   TMO_c0010   12123 ..   12137 -  -7.8  -3.23216   GGCGATGATGAGGAA               CGCCAC GCC GTAGCG               CGATCGCCAGAACCG  57 115
        silP NONE
        copC NONE
        copD    7816 ..    7838 -  -4.1  -4.56775   ACTCCTTTGTAAAAA          CGACGACAAC TTGC GCCG-CGTCG           TTAAATGTAGAAGCA  71 111
        copK    7492 ..    7511 -  -3.4  -4.12198   CAGAAGCTTTGAAAA            GCACCGCA CACC CGCGGCGT             CATCCGCCGTGCTCT  60 25
        alsR    6250 ..    6276 -  -6.5  -3.66256   CACATGGGCAAAATA         GAGCGTGGGGA GCACA TGCCCACTCTC         GCTCTGATCTTAAGA  59 138
   TMO_c0003    2200 ..    2235 -  -9.6  -2.72991   GGAGACCGGCAACGA    CTCCTGGCGGCTGCGC AACA GCACCGCCGCCAACAA     GACCAAAGCCAGAAT  56 290
