LOCUS       NC_017182               4023 bp    DNA     circular CON 27-JUN-2013
DEFINITION  Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB05,
            complete sequence.
ACCESSION   NC_017182
VERSION     NC_017182.1  GI:384410883
DBLINK      Project: 55403
            BioProject: PRJNA55403
KEYWORDS    .
SOURCE      Zymomonas mobilis subsp. mobilis ATCC 10988
  ORGANISM  Zymomonas mobilis subsp. mobilis ATCC 10988
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Zymomonas.
REFERENCE   1  (bases 1 to 4023)
  AUTHORS   Pappas,K.M., Kouvelis,V.N., Saunders,E., Brettin,T.S., Bruce,D.,
            Detter,C., Balakireva,M., Han,C.S., Savvakis,G., Kyrpides,N.C. and
            Typas,M.A.
  TITLE     Genome Sequence of the Ethanol-Producing Zymomonas mobilis subsp.
            mobilis Lectotype Strain ATCC 10988
  JOURNAL   J. Bacteriol. 193 (18), 5051-5052 (2011)
   PUBMED   21725006
REFERENCE   2  (bases 1 to 4023)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
            Saunders,E., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L.,
            Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Pappas,K. and
            Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of plasmid5 of Zymomonas mobilis subsp. mobilis
            ATCC 10988
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 4023)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (bases 1 to 4023)
  AUTHORS   Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S.,
            Saunders,E., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L.,
            Kyrpides,N., Ivanova,N., Mikhailova,N., Pagani,I., Pappas,K.M. and
            Woyke,T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2011) US DOE Joint Genome Institute, 2800
            Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CP002855.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4084575
            Source DNA available from Katherine M. Pappas
            (kmpappas@biol.uoa.gr)
            Organism available from ATCC: ATCC 29192
            Contacts: Katherine M. Pappas (kmpappas@biol.uoa.gr)
                      Tanja Woyke (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            
            ##MIGS-Data-START##
            investigation_type  :: bacteria_archaea
            project_name        :: Zymomonas mobilis mobilis T.H.Delft 1, ATCC
                                   10988
            collection_date     :: 1929
            lat_lon             :: Missing
            depth               :: Missing
            alt_elev            :: Missing
            country             :: Mexico
            environment         :: Food
            num_replicons       :: 7
            ref_biomaterial     :: ATCC 10988, DSM 424, LMG 404, CCUG 17860
            biotic_relationship :: Free living
            trophic_level       :: Missing
            rel_to_oxygen       :: Facultative
            isol_growth_condt   :: Missing
            sequencing_meth     :: 454, Illumina
            assembly            :: Newbler v. 2.3 (pre-release)
            finishing_strategy  :: Finished
            GOLD Stamp ID       :: Gi02098
            Type Strain         :: Yes
            Gene Calling Method :: Prodigal 1.4, GenePRIMP
            Isolation Site      :: Fermenting Agave juice
            Isolation Comments  :: originally isolated as Pseudomonas lindneri,
                                   by Lindner
            Cell Shape          :: Rod-shaped
            Motility            :: Motile
            Temperature Range   :: Mesophile
            Temperature Optimum :: 30C
            Gram Staining       :: Gram-
            Diseases            :: None
            ##MIGS-Data-END##
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Finished
            Current Finishing Status :: Finished
            Assembly Method          :: Newbler v. 2.3
            Genome Coverage          :: 30x
            Sequencing Technology    :: Sanger/454/Illumina
            ##Genome-Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4023
                     /organism="Zymomonas mobilis subsp. mobilis ATCC 10988"
                     /mol_type="genomic DNA"
                     /strain="ATCC 10988"
                     /isolation_source="fermenting agave juice"
                     /sub_species="mobilis"
                     /culture_collection="ATCC:10988"
                     /db_xref="taxon:555217"
                     /plasmid="pZMOB05"
                     /country="Mexico"
                     /collection_date="1929"
     gene            983..1165
                     /locus_tag="Zmob_1871"
                     /db_xref="GeneID:12117516"
     CDS             983..1165
                     /locus_tag="Zmob_1871"
                     /inference="similar to AA sequence:KEGG:Za10_1824"
                     /note="KEGG: zmn:Za10_1824 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005527897.1"
                     /db_xref="GI:384410884"
                     /db_xref="GeneID:12117516"
                     /translation="MVRNRRGMVKVRFFARKDFIFRKLEKGYSRQMIFDEIGKELDCT
                     YEWFCRLIKKIETGTL"
     gene            complement(1326..2450)
                     /locus_tag="Zmob_1872"
                     /db_xref="GeneID:12117514"
     CDS             complement(1326..2450)
                     /locus_tag="Zmob_1872"
                     /inference="similar to AA sequence:KEGG:Za10_1825"
                     /note="KEGG: zmn:Za10_1825 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005527898.1"
                     /db_xref="GI:384410885"
                     /db_xref="InterPro:IPR012318"
                     /db_xref="GeneID:12117514"
                     /translation="MIKVSASNLIQQLQSQEDTSATTDKLVFRSYNEQPPQPEFDEND
                     YFRQLVKSGLDAESAADIAHKTAQARFLDPLERAEIRLKPLDPVHRNSYEVGEREHLV
                     WKAINKDHIGAYLEAVDQYSIKTRALSDKAVRLLKMLFRMADFRTGRLEPTLETISEK
                     VGFARATVVRLLRQLKEQGFLRWIRRSIRIKKEDARPQRRQTSNAYGFLSPASWPEIA
                     KQAFLHVMQRRHIPLPDDFSHAQENEAATTEKMLESLPVKEFAEVILGETEKGERKER
                     KTPPDRPLKKPQNSGFLREFNFDTLYSYNYLYNNALETSKTRKDQTDPFLLALYDRKF
                     RTDQNAAILEHRKKRKKLGWMPLSPDEIAQLLIKTRQMKP"
     misc_feature    complement(1908..2069)
                     /locus_tag="Zmob_1872"
                     /note="Helix-turn-helix domain; Region: HTH_36; pfam13730"
                     /db_xref="CDD:222348"
     gene            3327..3821
                     /locus_tag="Zmob_1873"
                     /db_xref="GeneID:12117515"
     CDS             3327..3821
                     /locus_tag="Zmob_1873"
                     /inference="similar to AA sequence:KEGG:BcerKBAB4_5408"
                     /note="KEGG: bwe:BcerKBAB4_5408 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005527899.1"
                     /db_xref="GI:384410886"
                     /db_xref="GeneID:12117515"
                     /translation="MSIGFYRVDDNYINFLKEIDSRIRDPKDNKRAYVGIILSVSGTD
                     FLAPLTSYKSKQDKIRPSTLTVFKLHEKNKPDNKLGMIQLGYMFPILPSIATKIDYSN
                     QAIKYNRLLATQYEFIRSEQDKIKARAERLYEHVLTCSNPNDFYLKFSCDFLALLKQF
                     RAFF"
     misc_feature    3333..3794
                     /locus_tag="Zmob_1873"
                     /note="Toxin ToxN, type III toxin-antitoxin system;
                     Region: ToxN_toxin; pfam13958"
                     /db_xref="CDD:222473"
ORIGIN      
        1 gatcacgtgg acttggacgt ggaagatcac gtggacttgg atgtggaaga tcacgcggac
       61 ttggatgtgg aagatcacgc ggatttggat aatttaataa gacatcagat ttcatctgat
      121 cactttctat ttataaatta aaagacaggt attttttaaa gaaagattcc taattagtaa
      181 aagtcaattt attatgaaaa aaaccaaatc ttattattgg tttttttcat aataaattgc
      241 atattgtatt ttagattttc ttccttttat taaagttggt atttaaattt taaaaaggaa
      301 ttatttatga cgacaggaaa aaaaccagca tcagaatcat caaaaatttt gagagatccg
      361 aagagcacaa aaacagaaaa aagcgttgct ggttcagatc tttctcaaag aaaaccaaaa
      421 ccaaaaaagt aaaatataac taatcaggtg taattataat tacacctgat taaattatgt
      481 ccaaatataa aaaagcaaaa gatacggcta cagctttgct atagattttt tcccaaaagg
      541 gtggctattt tccctttgcc ggaataattt ttcttaacta ctcaacaaga tcacctcgga
      601 gataagctac ttacaaaaag gtgtcttgtt caattcggct aggcggattg tgacctagtg
      661 ccaattctcg aagaagggtt gatactggca agcgaacttt ttctgctgtc ctcttaatct
      721 gatcgtattc ctctatagtc attctgactg gaacagattt ctgcgccctc ggtccgacat
      781 ttttattccg ttgagccaaa ggcgagtaag gtttgttgcc ccatgtgggg caacccatct
      841 tgccttcaaa aggggagaaa tttggttaca tttagtttca ttctagttca gcctttattc
      901 tatgtaatta aatgaactta agtgacctta attaaaacta aatgtaacta aatgaagcaa
      961 aatcaaatag gataggttca aaatggtaag aaatcggcgc ggcatggtaa aagtaagatt
     1021 ttttgcccga aaagatttta tttttaggaa attagaaaag ggttattccc gccagatgat
     1081 ctttgacgag atcggtaaag aactggactg cacctatgaa tggttttgcc ggttaataaa
     1141 aaagatagag acaggaacgc tataattgaa tgagaaagaa ggaaacttca ttcccctttc
     1201 taaaaaaata tgcgtttaat cgtccgtaga gtagcgtaag aagcccaatt tctttttcgc
     1261 ctagcctgtg agcgaagcga acagctttct gtcttctaag cgtgtttgaa agcttttggg
     1321 tataattatg gcttcatctg tcgggtttta atcaacagct gtgctatttc gtctggagaa
     1381 agaggcatcc agccgagttt ttttcttttt ttgcggtgtt caaggatagc tgcgttttga
     1441 tctgtccgaa actttctatc gtaaagagct aaaaggaacg gatcagtttg gtcttttcgg
     1501 gttttagagg tctccagagc gttattatat aaataattat aactatatag agtatcaaaa
     1561 ttgaactctc gtaaaaatcc cgaattttgg ggctttttca agggtcggtc aggcggtgtt
     1621 ttgcgctctt ttctctcccc tttttctgtc tctcccagga ttacttccgc aaactctttt
     1681 acgggcaaac tttccagcat tttttccgtt gttgccgcct cattttcttg agcatgagaa
     1741 aaatcatcgg gcaggggaat atgtctgcgc tgcatgacat gcaaaaaggc ctgtttcgct
     1801 atttcaggcc aagaggccgg agataaaaag ccgtaagcat tgctggtttg cctccgctga
     1861 gggcgggcat cttccttttt aattctgatt gatcgccgta tccaacgaag gaatccttgc
     1921 tcttttagct gcctcaataa tcggacaacg gtcgcacgag caaaaccaac tttttcagaa
     1981 atagtctcaa gagtcggttc taaacgacct gttctaaagt cagccatccg aaacagcatc
     2041 tttagcaaac gaaccgcttt atcacttaaa gcccgtgtct tgatcgaata ctgatcgaca
     2101 gcttcaagat aggcaccaat atgatcttta ttgatagctt tccaaacgag atgttcacgt
     2161 tcgcccactt cataagaatt tctatgaacg gggtctaatg gcttcaatct gatttctgca
     2221 cgttccagtg ggtcaagaaa tctggcttgg gcggttttat gggcaatgtc tgccgcagat
     2281 tcagcatcta aaccactttt gacaagctga cgaaaatagt cattctcatc aaattcaggc
     2341 tgtggcggtt gttcgttata acttcggaaa actaatttat ccgttgttgc gctagtatcc
     2401 tcttgggact gaagctgctg gataagatta gaagcactta cttttatcat tttcctgtcc
     2461 tctctatgga cagggctaga tttcactaca caatttttta cctctttaga ggcttgcgta
     2521 ttcctgcaac aatcattaga atcaacattg ctttttattg gtatgtcggt tctagtaacc
     2581 gttacatttc aaaatcaaaa cgtctggttg tttcctgcaa ccggacgttt tttttgccct
     2641 gaaagtattt caaaactggt tgaaaattta cgcttatttt gcgcttcaaa gcaagcaaaa
     2701 atagaataga attctaaagg tttctctttc tgattttcta ccagaaatat ttaacaggtt
     2761 aagctcgtct taaaaacgta tatttataag ctgtatattg agcatcttcg atgcgaataa
     2821 atcaagtgaa ggactagtcc ttcacctaac ctgcccctca tttttcctgt tttttttcaa
     2881 gattcttgaa agccgatctt tcaatctttt aaaatttaaa aaaatagttt taaatcttta
     2941 aaaatattga ggttaatcaa aaaaagatta ttattttcaa tgggttatat tgtagatatc
     3001 aggacataga ggtaatcttt ttaaaaccct cgttgacctt gacctgactg ataactgtca
     3061 accataaaaa cacataattt tagtcaaaat caccgataaa ctgatatcct acactattac
     3121 tatctcggct cagtaatcgc tgtcggaaat agcaagcacg cggaaaacaa atgctattat
     3181 ccttcgttga caagcgtcag aataatactt aaattgcttt gtaaggtgtc tcactacctt
     3241 aaatgtgggg gtgaaaatag gcgctccact gccttaatgt gggtcagggg tagttgaaaa
     3301 actgcccctt ttatattggg tcatctatgt ctattggctt ttatcgggtt gacgataatt
     3361 atataaattt cttgaaagaa atagattctc gtattcgaga ccccaaagac aataagcggg
     3421 catatgtcgg tattattcta agcgtttctg gtacagattt ccttgcgccc ttaacttcat
     3481 acaaaagtaa gcaagataaa ataagaccat cgactttgac ggtttttaaa ctgcatgaga
     3541 aaaacaaacc tgataataag ctagggatga ttcaactggg gtatatgttc cctatcctac
     3601 cctcgattgc cacaaaaata gattattcaa accaagcgat aaaatataat cggctgttag
     3661 ctactcaata tgaatttatt cggagtgaac aggacaaaat taaagcacga gcagaaaggc
     3721 tttatgagca tgtgcttacc tgttctaatc caaatgactt ctatctaaaa ttttcatgtg
     3781 actttttggc tcttcttaaa caattccgag cattttttta aaaatagcaa gccaatagaa
     3841 aagacatgat gagttagttc tcgttcagta aggaaatcga caaagtttag cggatataaa
     3901 atgaagctat ttatacccgc taacggttag tccgtcttct atgccggaaa acgcctgatt
     3961 tatggttaaa aaatttctaa gaataatttg gacgtggaag atcacgtgga cttggacgtg
     4021 gaa
//
