Paste Fasta DNA Sequence below


Create PFM example Make Position Frequency Matrix (PFM) from alignment [alignment can be in fasta format or plain text]
Search PFM intergenic example Search PFM in Intergenic regions only
Search PFM example Search PFM in Whole genome
Search RE intergenic example Regular Expression in intergenic regions only
Search RE example Regular Expression in the Whole genome
BLAST DNA motif example BLAST DNA motif to Whole genome (optimized short-blast)
Add nearest example Add nearest downstream gene to motifs [first column should contain the start point of the motif]