GSEA for prokaryotes

start_g2d_gsea_pro_sh
Functional analysis of Prokaryotes using Gene Set Enrichment Analysis (GSEA). Classes: GO, InterPro, KEGG, COG, PFAM, SMART, Superfamily, KEYWORDS and OPERONS
Use this powerpoint TUTORIAL or this short video the understand the input needed and the interpretation of the results. An example of results can be found here

STEP 1: Select Genome
Select genome from the RefSeq database [typically named ASMxxxx]

Optionally select genome with 'old' locus-tags from the old Genbank database [typically named NC_xxxx]
Genome2D support conversion between old-locus-tags and RefSeq locus-tags here
     Selected Genome = /var/genomes/g2d_mirror/Bacillus_subtilis_subsp_subtilis_str_168/ASM904v1_genomic