locus-tag class description APA03_RS00015 PF00589 Phage integrase family APA03_RS00015 PF13356 Arm DNA-binding domain APA03_RS00020 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APA03_RS00030 PF07690 Major Facilitator Superfamily APA03_RS00040 PF03966 Trm112p-like protein APA03_RS00045 PF02190 ATP-dependent protease La (LON) substrate-binding domain APA03_RS00045 PF05362 Lon protease (S16) C-terminal proteolytic domain APA03_RS00045 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS00050 PF00085 Thioredoxin APA03_RS00055 PF17755 UvrA DNA-binding domain APA03_RS00055 PF17760 UvrA interaction domain APA03_RS00080 PF00881 Nitroreductase family APA03_RS00090 PF00583 Acetyltransferase (GNAT) family APA03_RS00095 PF02843 Phosphoribosylglycinamide synthetase, C domain APA03_RS00095 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APA03_RS00095 PF02844 Phosphoribosylglycinamide synthetase, N domain APA03_RS00100 PF02601 Exonuclease VII, large subunit APA03_RS00100 PF13742 OB-fold nucleic acid binding domain APA03_RS00115 PF00266 Aminotransferase class-V APA03_RS00120 PF00171 Aldehyde dehydrogenase family APA03_RS00125 PF00107 Zinc-binding dehydrogenase APA03_RS00125 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS00130 PF02233 NAD(P) transhydrogenase beta subunit APA03_RS00135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APA03_RS00140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APA03_RS00140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APA03_RS00145 PF01118 Semialdehyde dehydrogenase, NAD binding domain APA03_RS00145 PF02774 Semialdehyde dehydrogenase, dimerisation domain APA03_RS00150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APA03_RS00155 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APA03_RS00160 PF00890 FAD binding domain APA03_RS00160 PF02910 Fumarate reductase flavoprotein C-term APA03_RS00165 PF13085 2Fe-2S iron-sulfur cluster binding domain APA03_RS00175 PF00892 EamA-like transporter family APA03_RS00180 PF00162 Phosphoglycerate kinase APA03_RS00185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APA03_RS00185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APA03_RS00190 PF02780 Transketolase, C-terminal domain APA03_RS00190 PF02779 Transketolase, pyrimidine binding domain APA03_RS00190 PF00456 Transketolase, thiamine diphosphate binding domain APA03_RS00200 PF00155 Aminotransferase class I and II APA03_RS00205 PF13462 Thioredoxin APA03_RS00215 PF00154 recA bacterial DNA recombination protein APA03_RS00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS00225 PF03459 TOBE domain APA03_RS00230 PF04349 Periplasmic glucan biosynthesis protein, MdoG APA03_RS00235 PF13632 Glycosyl transferase family group 2 APA03_RS00240 PF01979 Amidohydrolase family APA03_RS00245 PF07690 Major Facilitator Superfamily APA03_RS00255 PF12170 DNA polymerase III tau subunit V interacting with alpha APA03_RS00255 PF12169 DNA polymerase III subunits gamma and tau domain III APA03_RS00255 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding APA03_RS00260 PF02575 YbaB/EbfC DNA-binding family APA03_RS00265 PF02132 RecR protein APA03_RS00265 PF13662 Toprim domain APA03_RS00275 PF02152 Dihydroneopterin aldolase APA03_RS00285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APA03_RS00290 PF02224 Cytidylate kinase APA03_RS00295 PF00575 S1 RNA binding domain APA03_RS00310 PF01725 Ham1 family APA03_RS00315 PF03725 3' exoribonuclease family, domain 2 APA03_RS00315 PF01138 3' exoribonuclease family, domain 1 APA03_RS00320 PF01628 HrcA protein C terminal domain APA03_RS00325 PF00912 Transglycosylase APA03_RS00325 PF00905 Penicillin binding protein transpeptidase domain APA03_RS00325 PF17092 Penicillin-binding protein OB-like domain APA03_RS00330 PF00472 RF-1 domain APA03_RS00330 PF03462 PCRF domain APA03_RS00340 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS00345 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS00350 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS00360 PF01098 Cell cycle protein APA03_RS00365 PF00905 Penicillin binding protein transpeptidase domain APA03_RS00365 PF03717 Penicillin-binding Protein dimerisation domain APA03_RS00385 PF00682 HMGL-like APA03_RS00385 PF08502 LeuA allosteric (dimerisation) domain APA03_RS00390 PF02628 Cytochrome oxidase assembly protein APA03_RS00400 PF07690 Major Facilitator Superfamily APA03_RS00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS00405 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS00405 PF08448 PAS fold APA03_RS00405 PF13188 PAS domain APA03_RS00405 PF00072 Response regulator receiver domain APA03_RS00410 PF00156 Phosphoribosyl transferase domain APA03_RS00415 PF04632 Fusaric acid resistance protein family APA03_RS00420 PF13660 Domain of unknown function (DUF4147) APA03_RS00420 PF05161 MOFRL family APA03_RS00425 PF03167 Uracil DNA glycosylase superfamily APA03_RS00430 PF00034 Cytochrome c APA03_RS00430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS00435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS00435 PF13360 PQQ-like domain APA03_RS00445 PF01027 Inhibitor of apoptosis-promoting Bax1 APA03_RS00455 PF06481 COX Aromatic Rich Motif APA03_RS00455 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APA03_RS00460 PF00115 Cytochrome C and Quinol oxidase polypeptide I APA03_RS00465 PF00510 Cytochrome c oxidase subunit III APA03_RS00470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APA03_RS00480 PF11953 Domain of unknown function (DUF3470) APA03_RS00480 PF00037 4Fe-4S binding domain APA03_RS00490 PF00883 Cytosol aminopeptidase family, catalytic domain APA03_RS00490 PF02789 Cytosol aminopeptidase family, N-terminal domain APA03_RS00505 PF00953 Glycosyl transferase family 4 APA03_RS00510 PF02719 Polysaccharide biosynthesis protein APA03_RS00515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APA03_RS00525 PF01979 Amidohydrolase family APA03_RS00530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APA03_RS00530 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS00535 PF00970 Oxidoreductase FAD-binding domain APA03_RS00535 PF00175 Oxidoreductase NAD-binding domain APA03_RS00550 PF09335 SNARE associated Golgi protein APA03_RS00555 PF00326 Prolyl oligopeptidase family APA03_RS00560 PF00390 Malic enzyme, N-terminal domain APA03_RS00560 PF03949 Malic enzyme, NAD binding domain APA03_RS00565 PF02357 Transcription termination factor nusG APA03_RS00565 PF00467 KOW motif APA03_RS00590 PF00213 ATP synthase delta (OSCP) subunit APA03_RS00595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APA03_RS00595 PF00306 ATP synthase alpha/beta chain, C terminal domain APA03_RS00595 PF02874 ATP synthase alpha/beta family, beta-barrel domain APA03_RS00600 PF00231 ATP synthase APA03_RS00605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APA03_RS00605 PF02874 ATP synthase alpha/beta family, beta-barrel domain APA03_RS00610 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APA03_RS00615 PF14489 QueF-like protein APA03_RS00620 PF01612 3'-5' exonuclease APA03_RS00620 PF00570 HRDC domain APA03_RS00625 PF00294 pfkB family carbohydrate kinase APA03_RS00640 PF00324 Amino acid permease APA03_RS00645 PF00005 ABC transporter APA03_RS00645 PF12857 TOBE-like domain APA03_RS00645 PF17850 CysA C-terminal regulatory domain APA03_RS00650 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS00655 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS00685 PF02311 AraC-like ligand binding domain APA03_RS00685 PF12833 Helix-turn-helix domain APA03_RS00690 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APA03_RS00695 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APA03_RS00705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APA03_RS00705 PF00529 HlyD membrane-fusion protein of T1SS APA03_RS00710 PF00873 AcrB/AcrD/AcrF family APA03_RS00715 PF02321 Outer membrane efflux protein APA03_RS00720 PF00313 'Cold-shock' DNA-binding domain APA03_RS00730 PF01609 Transposase DDE domain APA03_RS00750 PF07660 Secretin and TonB N terminus short domain APA03_RS00750 PF07715 TonB-dependent Receptor Plug Domain APA03_RS00750 PF00593 TonB dependent receptor APA03_RS00760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APA03_RS00775 PF00795 Carbon-nitrogen hydrolase APA03_RS00780 PF00072 Response regulator receiver domain APA03_RS00780 PF00486 Transcriptional regulatory protein, C terminal APA03_RS00785 PF09308 LuxQ, periplasmic APA03_RS00785 PF00072 Response regulator receiver domain APA03_RS00785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS00785 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS00805 PF00005 ABC transporter APA03_RS00805 PF12399 Branched-chain amino acid ATP-binding cassette transporter APA03_RS00810 PF00005 ABC transporter APA03_RS00875 PF00069 Protein kinase domain APA03_RS00875 PF03793 PASTA domain APA03_RS00880 PF03793 PASTA domain APA03_RS00880 PF00069 Protein kinase domain APA03_RS00890 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS00890 PF13007 Transposase C of IS166 homeodomain APA03_RS00890 PF13817 IS66 C-terminal element APA03_RS00890 PF03050 Transposase IS66 family APA03_RS00900 PF01527 Transposase APA03_RS00920 PF03692 Putative zinc- or iron-chelating domain APA03_RS00935 PF00005 ABC transporter APA03_RS00935 PF08402 TOBE domain APA03_RS00960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APA03_RS00960 PF00529 HlyD membrane-fusion protein of T1SS APA03_RS00965 PF02321 Outer membrane efflux protein APA03_RS00980 PF13243 Squalene-hopene cyclase C-terminal domain APA03_RS00980 PF13249 Squalene-hopene cyclase N-terminal domain APA03_RS00985 PF01593 Flavin containing amine oxidoreductase APA03_RS01005 PF01370 NAD dependent epimerase/dehydratase family APA03_RS01015 PF02153 Prephenate dehydrogenase APA03_RS01030 PF03466 LysR substrate binding domain APA03_RS01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS01035 PF00578 AhpC/TSA family APA03_RS01040 PF02627 Carboxymuconolactone decarboxylase family APA03_RS01055 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APA03_RS01060 PF00719 Inorganic pyrophosphatase APA03_RS01070 PF12848 ABC transporter APA03_RS01070 PF00005 ABC transporter APA03_RS01075 PF13302 Acetyltransferase (GNAT) domain APA03_RS01090 PF00226 DnaJ domain APA03_RS01090 PF05099 Tellurite resistance protein TerB APA03_RS01100 PF08331 Domain of unknown function (DUF1730) APA03_RS01105 PF01702 Queuine tRNA-ribosyltransferase APA03_RS01110 PF02547 Queuosine biosynthesis protein APA03_RS01120 PF01161 Phosphatidylethanolamine-binding protein APA03_RS01135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APA03_RS01135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APA03_RS01150 PF08471 Class II vitamin B12-dependent ribonucleotide reductase APA03_RS01150 PF02867 Ribonucleotide reductase, barrel domain APA03_RS01175 PF02358 Trehalose-phosphatase APA03_RS01180 PF00982 Glycosyltransferase family 20 APA03_RS01185 PF02600 Disulfide bond formation protein DsbB APA03_RS01200 PF00248 Aldo/keto reductase family APA03_RS01210 PF17757 UvrB interaction domain APA03_RS01210 PF12344 Ultra-violet resistance protein B APA03_RS01210 PF04851 Type III restriction enzyme, res subunit APA03_RS01210 PF00271 Helicase conserved C-terminal domain APA03_RS01210 PF02151 UvrB/uvrC motif APA03_RS01220 PF05193 Peptidase M16 inactive domain APA03_RS01220 PF00675 Insulinase (Peptidase family M16) APA03_RS01250 PF00324 Amino acid permease APA03_RS01255 PF00817 impB/mucB/samB family APA03_RS01255 PF11799 impB/mucB/samB family C-terminal domain APA03_RS01270 PF01180 Dihydroorotate dehydrogenase APA03_RS01285 PF13277 YmdB-like protein APA03_RS01290 PF01812 5-formyltetrahydrofolate cyclo-ligase family APA03_RS01310 PF01791 DeoC/LacD family aldolase APA03_RS01315 PF02581 Thiamine monophosphate synthase APA03_RS01360 PF01609 Transposase DDE domain APA03_RS01385 PF00152 tRNA synthetases class II (D, K and N) APA03_RS01390 PF12544 Lysine-2,3-aminomutase APA03_RS01390 PF04055 Radical SAM superfamily APA03_RS01400 PF00557 Metallopeptidase family M24 APA03_RS01405 PF07943 Penicillin-binding protein 5, C-terminal domain APA03_RS01405 PF00768 D-alanyl-D-alanine carboxypeptidase APA03_RS01410 PF02617 ATP-dependent Clp protease adaptor protein ClpS APA03_RS01415 PF07724 AAA domain (Cdc48 subfamily) APA03_RS01415 PF02861 Clp amino terminal domain, pathogenicity island component APA03_RS01415 PF10431 C-terminal, D2-small domain, of ClpB protein APA03_RS01415 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS01415 PF17871 AAA lid domain APA03_RS01425 PF03976 Polyphosphate kinase 2 (PPK2) APA03_RS01430 PF02622 Uncharacterized ACR, COG1678 APA03_RS01435 PF03668 P-loop ATPase protein family APA03_RS01445 PF13755 Sensor N-terminal transmembrane domain APA03_RS01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS01445 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS01445 PF13756 Stimulus-sensing domain APA03_RS01445 PF00672 HAMP domain APA03_RS01450 PF00486 Transcriptional regulatory protein, C terminal APA03_RS01450 PF00072 Response regulator receiver domain APA03_RS01455 PF01025 GrpE APA03_RS01460 PF00012 Hsp70 protein APA03_RS01465 PF00226 DnaJ domain APA03_RS01465 PF00684 DnaJ central domain APA03_RS01465 PF01556 DnaJ C terminal domain APA03_RS01470 PF01113 Dihydrodipicolinate reductase, N-terminus APA03_RS01470 PF05173 Dihydrodipicolinate reductase, C-terminus APA03_RS01475 PF00438 S-adenosylmethionine synthetase, N-terminal domain APA03_RS01475 PF02773 S-adenosylmethionine synthetase, C-terminal domain APA03_RS01475 PF02772 S-adenosylmethionine synthetase, central domain APA03_RS01480 PF02390 Putative methyltransferase APA03_RS01485 PF02142 MGS-like domain APA03_RS01485 PF01808 AICARFT/IMPCHase bienzyme APA03_RS01500 PF00892 EamA-like transporter family APA03_RS01505 PF02092 Glycyl-tRNA synthetase beta subunit APA03_RS01505 PF05746 DALR anticodon binding domain APA03_RS01510 PF02091 Glycyl-tRNA synthetase alpha subunit APA03_RS01520 PF01381 Helix-turn-helix APA03_RS01525 PF00795 Carbon-nitrogen hydrolase APA03_RS01535 PF01475 Ferric uptake regulator family APA03_RS01545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APA03_RS01545 PF07497 Rho termination factor, RNA-binding domain APA03_RS01545 PF07498 Rho termination factor, N-terminal domain APA03_RS01555 PF01544 CorA-like Mg2+ transporter protein APA03_RS01565 PF00291 Pyridoxal-phosphate dependent enzyme APA03_RS01570 PF00290 Tryptophan synthase alpha chain APA03_RS01575 PF04205 FMN-binding domain APA03_RS01575 PF00890 FAD binding domain APA03_RS01575 PF03358 NADPH-dependent FMN reductase APA03_RS01585 PF13393 Histidyl-tRNA synthetase APA03_RS01590 PF00709 Adenylosuccinate synthetase APA03_RS01595 PF00486 Transcriptional regulatory protein, C terminal APA03_RS01595 PF00072 Response regulator receiver domain APA03_RS01600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS01600 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS01600 PF00989 PAS fold APA03_RS01600 PF11808 Phosphate regulon sensor protein PhoR APA03_RS01605 PF12849 PBP superfamily domain APA03_RS01625 PF00328 Histidine phosphatase superfamily (branch 2) APA03_RS01630 PF00571 CBS domain APA03_RS01630 PF01595 Cyclin M transmembrane N-terminal domain APA03_RS01630 PF03471 Transporter associated domain APA03_RS01635 PF00107 Zinc-binding dehydrogenase APA03_RS01635 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS01640 PF03412 Peptidase C39 family APA03_RS01640 PF00664 ABC transporter transmembrane region APA03_RS01640 PF00005 ABC transporter APA03_RS01665 PF01118 Semialdehyde dehydrogenase, NAD binding domain APA03_RS01670 PF03819 MazG nucleotide pyrophosphohydrolase domain APA03_RS01680 PF00183 Hsp90 protein APA03_RS01770 PF01757 Acyltransferase family APA03_RS01795 PF09856 Predicted transcriptional regulator (DUF2083) APA03_RS01795 PF06114 IrrE N-terminal-like domain APA03_RS01795 PF01381 Helix-turn-helix APA03_RS01800 PF03972 MmgE/PrpD family APA03_RS01805 PF00285 Citrate synthase, C-terminal domain APA03_RS01815 PF13193 AMP-binding enzyme C-terminal domain APA03_RS01815 PF00501 AMP-binding enzyme APA03_RS01815 PF16177 Acetyl-coenzyme A synthetase N-terminus APA03_RS01820 PF07690 Major Facilitator Superfamily APA03_RS01835 PF02073 Thermophilic metalloprotease (M29) APA03_RS01850 PF00152 tRNA synthetases class II (D, K and N) APA03_RS01850 PF01336 OB-fold nucleic acid binding domain APA03_RS01850 PF02938 GAD domain APA03_RS01855 PF01212 Beta-eliminating lyase APA03_RS01860 PF01386 Ribosomal L25p family APA03_RS01860 PF14693 Ribosomal protein TL5, C-terminal domain APA03_RS01865 PF01195 Peptidyl-tRNA hydrolase APA03_RS01870 PF01926 50S ribosome-binding GTPase APA03_RS01870 PF06071 Protein of unknown function (DUF933) APA03_RS01875 PF00171 Aldehyde dehydrogenase family APA03_RS01880 PF01467 Cytidylyltransferase-like APA03_RS01890 PF02590 Predicted SPOUT methyltransferase APA03_RS01900 PF03466 LysR substrate binding domain APA03_RS01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS01905 PF03306 Alpha-acetolactate decarboxylase APA03_RS01910 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS01910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS01910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS01920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS01920 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS01920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS01925 PF02754 Cysteine-rich domain APA03_RS01930 PF11870 Domain of unknown function (DUF3390) APA03_RS01930 PF02589 LUD domain APA03_RS01930 PF13183 4Fe-4S dicluster domain APA03_RS01940 PF13536 Putative multidrug resistance efflux transporter APA03_RS01945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APA03_RS01950 PF00692 dUTPase APA03_RS01965 PF04794 YdjC-like protein APA03_RS01985 PF02780 Transketolase, C-terminal domain APA03_RS01985 PF02779 Transketolase, pyrimidine binding domain APA03_RS01985 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APA03_RS01990 PF04055 Radical SAM superfamily APA03_RS01990 PF06463 Molybdenum Cofactor Synthesis C APA03_RS01995 PF01595 Cyclin M transmembrane N-terminal domain APA03_RS01995 PF03471 Transporter associated domain APA03_RS01995 PF00571 CBS domain APA03_RS02000 PF01464 Transglycosylase SLT domain APA03_RS02005 PF03167 Uracil DNA glycosylase superfamily APA03_RS02015 PF08544 GHMP kinases C terminal APA03_RS02015 PF00288 GHMP kinases N terminal domain APA03_RS02030 PF00106 short chain dehydrogenase APA03_RS02045 PF01554 MatE APA03_RS02050 PF00005 ABC transporter APA03_RS02060 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APA03_RS02060 PF14572 Phosphoribosyl synthetase-associated domain APA03_RS02105 PF03466 LysR substrate binding domain APA03_RS02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS02110 PF00999 Sodium/hydrogen exchanger family APA03_RS02120 PF00593 TonB dependent receptor APA03_RS02120 PF07715 TonB-dependent Receptor Plug Domain APA03_RS02130 PF01032 FecCD transport family APA03_RS02135 PF00005 ABC transporter APA03_RS02140 PF00728 Glycosyl hydrolase family 20, catalytic domain APA03_RS02140 PF07691 PA14 domain APA03_RS02140 PF02838 Glycosyl hydrolase family 20, domain 2 APA03_RS02145 PF01869 BadF/BadG/BcrA/BcrD ATPase family APA03_RS02150 PF13580 SIS domain APA03_RS02160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APA03_RS02170 PF01609 Transposase DDE domain APA03_RS02200 PF01641 SelR domain APA03_RS02215 PF00155 Aminotransferase class I and II APA03_RS02230 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS02245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APA03_RS02245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APA03_RS02265 PF03466 LysR substrate binding domain APA03_RS02265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS02275 PF07291 Methylamine utilisation protein MauE APA03_RS02280 PF00578 AhpC/TSA family APA03_RS02285 PF02975 Methylamine dehydrogenase, L chain APA03_RS02300 PF00578 AhpC/TSA family APA03_RS02310 PF00248 Aldo/keto reductase family APA03_RS02315 PF03466 LysR substrate binding domain APA03_RS02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS02320 PF00171 Aldehyde dehydrogenase family APA03_RS02325 PF00034 Cytochrome c APA03_RS02325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS02330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APA03_RS02335 PF01799 [2Fe-2S] binding domain APA03_RS02335 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS02390 PF02325 YGGT family APA03_RS02475 PF07715 TonB-dependent Receptor Plug Domain APA03_RS02475 PF00593 TonB dependent receptor APA03_RS02565 PF00239 Resolvase, N terminal domain APA03_RS02565 PF02796 Helix-turn-helix domain of resolvase APA03_RS02585 PF01757 Acyltransferase family APA03_RS02610 PF17773 UPF0176 acylphosphatase like domain APA03_RS02610 PF00581 Rhodanese-like domain APA03_RS02735 PF00999 Sodium/hydrogen exchanger family APA03_RS02765 PF00551 Formyl transferase APA03_RS02770 PF04343 Protein of unknown function, DUF488 APA03_RS02775 PF02082 Transcriptional regulator APA03_RS02780 PF00106 short chain dehydrogenase APA03_RS02785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APA03_RS02800 PF03061 Thioesterase superfamily APA03_RS02820 PF01431 Peptidase family M13 APA03_RS02820 PF05649 Peptidase family M13 APA03_RS02830 PF17938 Tetracyclin repressor-like, C-terminal domain APA03_RS02830 PF00440 Bacterial regulatory proteins, tetR family APA03_RS02835 PF01144 Coenzyme A transferase APA03_RS02860 PF01144 Coenzyme A transferase APA03_RS02865 PF05161 MOFRL family APA03_RS02865 PF13660 Domain of unknown function (DUF4147) APA03_RS02870 PF02770 Acyl-CoA dehydrogenase, middle domain APA03_RS02870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APA03_RS02870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APA03_RS02890 PF01012 Electron transfer flavoprotein domain APA03_RS02895 PF01609 Transposase DDE domain APA03_RS02920 PF00766 Electron transfer flavoprotein FAD-binding domain APA03_RS02920 PF01012 Electron transfer flavoprotein domain APA03_RS02925 PF00171 Aldehyde dehydrogenase family APA03_RS02930 PF00732 GMC oxidoreductase APA03_RS02930 PF05199 GMC oxidoreductase APA03_RS02935 PF07690 Major Facilitator Superfamily APA03_RS02945 PF04966 Carbohydrate-selective porin, OprB family APA03_RS02975 PF03976 Polyphosphate kinase 2 (PPK2) APA03_RS02980 PF01384 Phosphate transporter family APA03_RS02990 PF00676 Dehydrogenase E1 component APA03_RS02995 PF02780 Transketolase, C-terminal domain APA03_RS02995 PF02779 Transketolase, pyrimidine binding domain APA03_RS03000 PF00561 alpha/beta hydrolase fold APA03_RS03000 PF00364 Biotin-requiring enzyme APA03_RS03005 PF00011 Hsp20/alpha crystallin family APA03_RS03020 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS03030 PF02492 CobW/HypB/UreG, nucleotide-binding domain APA03_RS03030 PF07683 Cobalamin synthesis protein cobW C-terminal domain APA03_RS03035 PF00654 Voltage gated chloride channel APA03_RS03040 PF16916 Dimerisation domain of Zinc Transporter APA03_RS03040 PF01545 Cation efflux family APA03_RS03045 PF01545 Cation efflux family APA03_RS03055 PF00561 alpha/beta hydrolase fold APA03_RS03070 PF03169 OPT oligopeptide transporter protein APA03_RS03100 PF00899 ThiF family APA03_RS03110 PF00224 Pyruvate kinase, barrel domain APA03_RS03110 PF02887 Pyruvate kinase, alpha/beta domain APA03_RS03130 PF03144 Elongation factor Tu domain 2 APA03_RS03130 PF00679 Elongation factor G C-terminus APA03_RS03130 PF00009 Elongation factor Tu GTP binding domain APA03_RS03140 PF01266 FAD dependent oxidoreductase APA03_RS03145 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS03150 PF00180 Isocitrate/isopropylmalate dehydrogenase APA03_RS03170 PF00155 Aminotransferase class I and II APA03_RS03175 PF00543 Nitrogen regulatory protein P-II APA03_RS03180 PF00120 Glutamine synthetase, catalytic domain APA03_RS03180 PF03951 Glutamine synthetase, beta-Grasp domain APA03_RS03190 PF01011 PQQ enzyme repeat APA03_RS03205 PF03144 Elongation factor Tu domain 2 APA03_RS03205 PF00679 Elongation factor G C-terminus APA03_RS03205 PF00009 Elongation factor Tu GTP binding domain APA03_RS03205 PF06421 GTP-binding protein LepA C-terminus APA03_RS03210 PF00561 alpha/beta hydrolase fold APA03_RS03215 PF07021 Methionine biosynthesis protein MetW APA03_RS03215 PF00561 alpha/beta hydrolase fold APA03_RS03220 PF00271 Helicase conserved C-terminal domain APA03_RS03220 PF00270 DEAD/DEAH box helicase APA03_RS03230 PF00484 Carbonic anhydrase APA03_RS03240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APA03_RS03245 PF01192 RNA polymerase Rpb6 APA03_RS03250 PF04607 Region found in RelA / SpoT proteins APA03_RS03250 PF02824 TGS domain APA03_RS03250 PF13291 ACT domain APA03_RS03255 PF01648 4'-phosphopantetheinyl transferase superfamily APA03_RS03260 PF10502 Signal peptidase, peptidase S26 APA03_RS03265 PF00035 Double-stranded RNA binding motif APA03_RS03265 PF14622 Ribonuclease-III-like APA03_RS03270 PF01926 50S ribosome-binding GTPase APA03_RS03270 PF07650 KH domain APA03_RS03275 PF00696 Amino acid kinase family APA03_RS03280 PF01765 Ribosome recycling factor APA03_RS03285 PF01255 Putative undecaprenyl diphosphate synthase APA03_RS03295 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APA03_RS03295 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APA03_RS03295 PF13288 DXP reductoisomerase C-terminal domain APA03_RS03300 PF02163 Peptidase family M50 APA03_RS03300 PF17820 PDZ domain APA03_RS03305 PF07244 Surface antigen variable number repeat APA03_RS03305 PF01103 Surface antigen APA03_RS03315 PF00132 Bacterial transferase hexapeptide (six repeats) APA03_RS03315 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APA03_RS03320 PF07977 FabA-like domain APA03_RS03325 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APA03_RS03325 PF00132 Bacterial transferase hexapeptide (six repeats) APA03_RS03330 PF17930 LpxI N-terminal domain APA03_RS03330 PF06230 LpxI C-terminal domain APA03_RS03335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APA03_RS03345 PF00468 Ribosomal protein L34 APA03_RS03350 PF00825 Ribonuclease P APA03_RS03355 PF02096 60Kd inner membrane protein APA03_RS03355 PF14849 YidC periplasmic domain APA03_RS03360 PF01926 50S ribosome-binding GTPase APA03_RS03365 PF00696 Amino acid kinase family APA03_RS03370 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APA03_RS03370 PF14602 Hexapeptide repeat of succinyl-transferase APA03_RS03370 PF00132 Bacterial transferase hexapeptide (six repeats) APA03_RS03375 PF01546 Peptidase family M20/M25/M40 APA03_RS03375 PF07687 Peptidase dimerisation domain APA03_RS03385 PF01416 tRNA pseudouridine synthase APA03_RS03390 PF02911 Formyl transferase, C-terminal domain APA03_RS03390 PF00551 Formyl transferase APA03_RS03395 PF01327 Polypeptide deformylase APA03_RS03400 PF00011 Hsp20/alpha crystallin family APA03_RS03410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APA03_RS03410 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APA03_RS03420 PF03476 MOSC N-terminal beta barrel domain APA03_RS03420 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS03420 PF03473 MOSC domain APA03_RS03425 PF00005 ABC transporter APA03_RS03440 PF00571 CBS domain APA03_RS03440 PF01380 SIS domain APA03_RS03445 PF00570 HRDC domain APA03_RS03445 PF01612 3'-5' exonuclease APA03_RS03450 PF00588 SpoU rRNA Methylase family APA03_RS03450 PF08032 RNA 2'-O ribose methyltransferase substrate binding APA03_RS03460 PF00561 alpha/beta hydrolase fold APA03_RS03460 PF00106 short chain dehydrogenase APA03_RS03465 PF00625 Guanylate kinase APA03_RS03470 PF01467 Cytidylyltransferase-like APA03_RS03470 PF00294 pfkB family carbohydrate kinase APA03_RS03480 PF03796 DnaB-like helicase C terminal domain APA03_RS03480 PF00772 DnaB-like helicase N terminal domain APA03_RS03490 PF12794 Mechanosensitive ion channel inner membrane domain 1 APA03_RS03490 PF00924 Mechanosensitive ion channel APA03_RS03490 PF12795 Mechanosensitive ion channel porin domain APA03_RS03495 PF00005 ABC transporter APA03_RS03500 PF02405 Permease MlaE APA03_RS03510 PF18073 Rubredoxin metal binding domain APA03_RS03510 PF06745 KaiC APA03_RS03535 PF00324 Amino acid permease APA03_RS03545 PF14850 DNA-binding domain of Proline dehydrogenase APA03_RS03545 PF01619 Proline dehydrogenase APA03_RS03545 PF00171 Aldehyde dehydrogenase family APA03_RS03545 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APA03_RS03560 PF00501 AMP-binding enzyme APA03_RS03560 PF16177 Acetyl-coenzyme A synthetase N-terminus APA03_RS03560 PF13193 AMP-binding enzyme C-terminal domain APA03_RS03590 PF01923 Cobalamin adenosyltransferase APA03_RS03605 PF02913 FAD linked oxidases, C-terminal domain APA03_RS03605 PF01565 FAD binding domain APA03_RS03615 PF03481 Putative GTP-binding controlling metal-binding APA03_RS03615 PF01300 Telomere recombination APA03_RS03620 PF00459 Inositol monophosphatase family APA03_RS03625 PF02789 Cytosol aminopeptidase family, N-terminal domain APA03_RS03625 PF00883 Cytosol aminopeptidase family, catalytic domain APA03_RS03635 PF00248 Aldo/keto reductase family APA03_RS03640 PF13180 PDZ domain APA03_RS03645 PF04408 Helicase associated domain (HA2) APA03_RS03645 PF00271 Helicase conserved C-terminal domain APA03_RS03645 PF08482 ATP-dependent helicase C-terminal APA03_RS03645 PF00270 DEAD/DEAH box helicase APA03_RS03655 PF01430 Hsp33 protein APA03_RS03665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APA03_RS03665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APA03_RS03670 PF00202 Aminotransferase class-III APA03_RS03685 PF02416 mttA/Hcf106 family APA03_RS03690 PF00596 Class II Aldolase and Adducin N-terminal domain APA03_RS03695 PF03079 ARD/ARD' family APA03_RS03705 PF01687 Riboflavin kinase APA03_RS03705 PF06574 FAD synthetase APA03_RS03710 PF06827 Zinc finger found in FPG and IleRS APA03_RS03710 PF00133 tRNA synthetases class I (I, L, M and V) APA03_RS03710 PF08264 Anticodon-binding domain of tRNA APA03_RS03715 PF01252 Signal peptidase (SPase) II APA03_RS03725 PF08676 MutL C terminal dimerisation domain APA03_RS03725 PF01119 DNA mismatch repair protein, C-terminal domain APA03_RS03730 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APA03_RS03730 PF00361 Proton-conducting membrane transporter APA03_RS03735 PF00892 EamA-like transporter family APA03_RS03740 PF00986 DNA gyrase B subunit, carboxyl terminus APA03_RS03740 PF01751 Toprim domain APA03_RS03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS03740 PF00204 DNA gyrase B APA03_RS03755 PF02082 Transcriptional regulator APA03_RS03760 PF00291 Pyridoxal-phosphate dependent enzyme APA03_RS03765 PF00691 OmpA family APA03_RS03775 PF03572 Peptidase family S41 APA03_RS03775 PF13180 PDZ domain APA03_RS03780 PF08461 Ribonuclease R winged-helix domain APA03_RS03780 PF00773 RNB domain APA03_RS03780 PF00575 S1 RNA binding domain APA03_RS03780 PF17876 Cold shock domain APA03_RS03780 PF08206 Ribonuclease B OB domain APA03_RS03785 PF01131 DNA topoisomerase APA03_RS03785 PF13368 Topoisomerase C-terminal repeat APA03_RS03785 PF01396 Topoisomerase DNA binding C4 zinc finger APA03_RS03785 PF01751 Toprim domain APA03_RS03790 PF17782 DprA winged helix domain APA03_RS03790 PF02481 DNA recombination-mediator protein A APA03_RS03810 PF18255 DNA processing protein A sterile alpha motif domain APA03_RS03810 PF02481 DNA recombination-mediator protein A APA03_RS03815 PF02660 Glycerol-3-phosphate acyltransferase APA03_RS03820 PF01979 Amidohydrolase family APA03_RS03825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APA03_RS03825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APA03_RS03830 PF00749 tRNA synthetases class I (E and Q), catalytic domain APA03_RS03835 PF03772 Competence protein APA03_RS03835 PF00753 Metallo-beta-lactamase superfamily APA03_RS03835 PF13567 Domain of unknown function (DUF4131) APA03_RS03840 PF02627 Carboxymuconolactone decarboxylase family APA03_RS03845 PF03969 AFG1-like ATPase APA03_RS03850 PF00676 Dehydrogenase E1 component APA03_RS03850 PF16870 2-oxoglutarate dehydrogenase C-terminal APA03_RS03850 PF16078 2-oxoglutarate dehydrogenase N-terminus APA03_RS03850 PF02779 Transketolase, pyrimidine binding domain APA03_RS03855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APA03_RS03855 PF00364 Biotin-requiring enzyme APA03_RS03855 PF02817 e3 binding domain APA03_RS03860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APA03_RS03860 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS03875 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APA03_RS03875 PF05221 S-adenosyl-L-homocysteine hydrolase APA03_RS03890 PF00753 Metallo-beta-lactamase superfamily APA03_RS03890 PF16123 Hydroxyacylglutathione hydrolase C-terminus APA03_RS03920 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APA03_RS03925 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APA03_RS03930 PF01066 CDP-alcohol phosphatidyltransferase APA03_RS03935 PF02666 Phosphatidylserine decarboxylase APA03_RS03940 PF01411 tRNA synthetases class II (A) APA03_RS03940 PF02272 DHHA1 domain APA03_RS03940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APA03_RS03950 PF00691 OmpA family APA03_RS03955 PF01761 3-dehydroquinate synthase APA03_RS03965 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS03965 PF00589 Phage integrase family APA03_RS03970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APA03_RS03975 PF00994 Probable molybdopterin binding domain APA03_RS03975 PF18146 Damage-inducible protein CinA KH domain APA03_RS03975 PF02464 Competence-damaged protein APA03_RS03980 PF01921 tRNA synthetases class I (K) APA03_RS03995 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APA03_RS04000 PF00814 Glycoprotease family APA03_RS04005 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APA03_RS04005 PF03900 Porphobilinogen deaminase, C-terminal domain APA03_RS04015 PF02556 Preprotein translocase subunit SecB APA03_RS04020 PF00934 PE family APA03_RS04020 PF00300 Histidine phosphatase superfamily (branch 1) APA03_RS04030 PF01555 DNA methylase APA03_RS04035 PF03150 Di-haem cytochrome c peroxidase APA03_RS04035 PF00034 Cytochrome c APA03_RS04040 PF01713 Smr domain APA03_RS04040 PF00488 MutS domain V APA03_RS04050 PF01218 Coproporphyrinogen III oxidase APA03_RS04055 PF00033 Cytochrome b/b6/petB APA03_RS04055 PF00032 Cytochrome b(C-terminal)/b6/petD APA03_RS04055 PF02167 Cytochrome C1 family APA03_RS04060 PF02167 Cytochrome C1 family APA03_RS04060 PF00032 Cytochrome b(C-terminal)/b6/petD APA03_RS04060 PF00033 Cytochrome b/b6/petB APA03_RS04065 PF01048 Phosphorylase superfamily APA03_RS04085 PF00881 Nitroreductase family APA03_RS04090 PF02423 Ornithine cyclodeaminase/mu-crystallin family APA03_RS04095 PF00171 Aldehyde dehydrogenase family APA03_RS04105 PF01527 Transposase APA03_RS04110 PF13276 HTH-like domain APA03_RS04110 PF00665 Integrase core domain APA03_RS04110 PF13333 Integrase core domain APA03_RS04145 PF00239 Resolvase, N terminal domain APA03_RS04160 PF00589 Phage integrase family APA03_RS04160 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS04165 PF13356 Arm DNA-binding domain APA03_RS04165 PF00589 Phage integrase family APA03_RS04225 PF01527 Transposase APA03_RS04235 PF03050 Transposase IS66 family APA03_RS04235 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS04235 PF13007 Transposase C of IS166 homeodomain APA03_RS04235 PF13817 IS66 C-terminal element APA03_RS04240 PF00665 Integrase core domain APA03_RS04240 PF13333 Integrase core domain APA03_RS04240 PF13276 HTH-like domain APA03_RS04245 PF01527 Transposase APA03_RS04330 PF02548 Ketopantoate hydroxymethyltransferase APA03_RS04335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APA03_RS04340 PF01022 Bacterial regulatory protein, arsR family APA03_RS04345 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS04350 PF00089 Trypsin APA03_RS04355 PF16363 GDP-mannose 4,6 dehydratase APA03_RS04365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APA03_RS04365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APA03_RS04370 PF00206 Lyase APA03_RS04370 PF14698 Argininosuccinate lyase C-terminal APA03_RS04385 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APA03_RS04385 PF01488 Shikimate / quinate 5-dehydrogenase APA03_RS04385 PF08501 Shikimate dehydrogenase substrate binding domain APA03_RS04390 PF01121 Dephospho-CoA kinase APA03_RS04395 PF00929 Exonuclease APA03_RS04405 PF13579 Glycosyl transferase 4-like domain APA03_RS04405 PF00534 Glycosyl transferases group 1 APA03_RS04415 PF00834 Ribulose-phosphate 3 epimerase family APA03_RS04420 PF01029 NusB family APA03_RS04420 PF01189 16S rRNA methyltransferase RsmB/F APA03_RS04425 PF00551 Formyl transferase APA03_RS04430 PF02769 AIR synthase related protein, C-terminal domain APA03_RS04430 PF00586 AIR synthase related protein, N-terminal domain APA03_RS04440 PF17941 Polyphosphate kinase C-terminal domain 1 APA03_RS04440 PF13090 Polyphosphate kinase C-terminal domain 2 APA03_RS04440 PF13089 Polyphosphate kinase N-terminal domain APA03_RS04440 PF02503 Polyphosphate kinase middle domain APA03_RS04445 PF02541 Ppx/GppA phosphatase family APA03_RS04460 PF00005 ABC transporter APA03_RS04480 PF17655 Inward rectifier potassium channel C-terminal domain APA03_RS04480 PF07885 Ion channel APA03_RS04485 PF04632 Fusaric acid resistance protein family APA03_RS04490 PF04632 Fusaric acid resistance protein family APA03_RS04510 PF03918 Cytochrome C biogenesis protein APA03_RS04515 PF08534 Redoxin APA03_RS04520 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APA03_RS04520 PF01578 Cytochrome C assembly protein APA03_RS04525 PF03100 CcmE APA03_RS04530 PF01578 Cytochrome C assembly protein APA03_RS04560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APA03_RS04560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APA03_RS04565 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APA03_RS04590 PF08335 GlnD PII-uridylyltransferase APA03_RS04590 PF03710 Glutamate-ammonia ligase adenylyltransferase APA03_RS04595 PF00578 AhpC/TSA family APA03_RS04605 PF00083 Sugar (and other) transporter APA03_RS04615 PF02646 RmuC family APA03_RS04620 PF00486 Transcriptional regulatory protein, C terminal APA03_RS04620 PF00072 Response regulator receiver domain APA03_RS04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS04625 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS04630 PF00873 AcrB/AcrD/AcrF family APA03_RS04635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APA03_RS04640 PF02321 Outer membrane efflux protein APA03_RS04645 PF00298 Ribosomal protein L11, RNA binding domain APA03_RS04645 PF03946 Ribosomal protein L11, N-terminal domain APA03_RS04650 PF00687 Ribosomal protein L1p/L10e family APA03_RS04655 PF00466 Ribosomal protein L10 APA03_RS04660 PF00542 Ribosomal protein L7/L12 C-terminal domain APA03_RS04660 PF16320 Ribosomal protein L7/L12 dimerisation domain APA03_RS04665 PF04561 RNA polymerase Rpb2, domain 2 APA03_RS04665 PF04563 RNA polymerase beta subunit APA03_RS04665 PF00562 RNA polymerase Rpb2, domain 6 APA03_RS04665 PF04560 RNA polymerase Rpb2, domain 7 APA03_RS04665 PF04565 RNA polymerase Rpb2, domain 3 APA03_RS04665 PF10385 RNA polymerase beta subunit external 1 domain APA03_RS04670 PF04998 RNA polymerase Rpb1, domain 5 APA03_RS04670 PF04997 RNA polymerase Rpb1, domain 1 APA03_RS04670 PF00623 RNA polymerase Rpb1, domain 2 APA03_RS04670 PF04983 RNA polymerase Rpb1, domain 3 APA03_RS04670 PF05000 RNA polymerase Rpb1, domain 4 APA03_RS04675 PF00164 Ribosomal protein S12/S23 APA03_RS04680 PF00177 Ribosomal protein S7p/S5e APA03_RS04685 PF03144 Elongation factor Tu domain 2 APA03_RS04685 PF00009 Elongation factor Tu GTP binding domain APA03_RS04685 PF03143 Elongation factor Tu C-terminal domain APA03_RS04690 PF00338 Ribosomal protein S10p/S20e APA03_RS04695 PF00297 Ribosomal protein L3 APA03_RS04700 PF00573 Ribosomal protein L4/L1 family APA03_RS04705 PF00276 Ribosomal protein L23 APA03_RS04710 PF00181 Ribosomal Proteins L2, RNA binding domain APA03_RS04710 PF03947 Ribosomal Proteins L2, C-terminal domain APA03_RS04715 PF00203 Ribosomal protein S19 APA03_RS04720 PF00237 Ribosomal protein L22p/L17e APA03_RS04725 PF07650 KH domain APA03_RS04725 PF00189 Ribosomal protein S3, C-terminal domain APA03_RS04730 PF00252 Ribosomal protein L16p/L10e APA03_RS04735 PF00831 Ribosomal L29 protein APA03_RS04740 PF00366 Ribosomal protein S17 APA03_RS04745 PF00238 Ribosomal protein L14p/L23e APA03_RS04750 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APA03_RS04755 PF00281 Ribosomal protein L5 APA03_RS04755 PF00673 ribosomal L5P family C-terminus APA03_RS04760 PF00253 Ribosomal protein S14p/S29e APA03_RS04765 PF00410 Ribosomal protein S8 APA03_RS04770 PF00347 Ribosomal protein L6 APA03_RS04775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APA03_RS04780 PF00333 Ribosomal protein S5, N-terminal domain APA03_RS04780 PF03719 Ribosomal protein S5, C-terminal domain APA03_RS04785 PF00327 Ribosomal protein L30p/L7e APA03_RS04790 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APA03_RS04795 PF00344 SecY translocase APA03_RS04800 PF05191 Adenylate kinase, active site lid APA03_RS04805 PF00416 Ribosomal protein S13/S18 APA03_RS04810 PF00411 Ribosomal protein S11 APA03_RS04815 PF01000 RNA polymerase Rpb3/RpoA insert domain APA03_RS04815 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APA03_RS04815 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APA03_RS04820 PF01196 Ribosomal protein L17 APA03_RS04830 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS04835 PF00005 ABC transporter APA03_RS04850 PF02321 Outer membrane efflux protein APA03_RS04855 PF00873 AcrB/AcrD/AcrF family APA03_RS04860 PF00873 AcrB/AcrD/AcrF family APA03_RS04865 PF13533 Biotin-lipoyl like APA03_RS04870 PF07690 Major Facilitator Superfamily APA03_RS04875 PF05532 CsbD-like APA03_RS04880 PF01351 Ribonuclease HII APA03_RS04885 PF18755 Restriction Enzyme Adenine Methylase Associated APA03_RS04885 PF01555 DNA methylase APA03_RS04910 PF17863 AAA lid domain APA03_RS04910 PF07726 ATPase family associated with various cellular activities (AAA) APA03_RS04920 PF01743 Poly A polymerase head domain APA03_RS04920 PF12627 Probable RNA and SrmB- binding site of polymerase A APA03_RS04920 PF13735 tRNA nucleotidyltransferase domain 2 putative APA03_RS04925 PF00005 ABC transporter APA03_RS04925 PF00664 ABC transporter transmembrane region APA03_RS04930 PF13533 Biotin-lipoyl like APA03_RS04935 PF07690 Major Facilitator Superfamily APA03_RS04940 PF00293 NUDIX domain APA03_RS04950 PF03572 Peptidase family S41 APA03_RS04950 PF13180 PDZ domain APA03_RS04960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APA03_RS04960 PF01676 Metalloenzyme superfamily APA03_RS04965 PF00291 Pyridoxal-phosphate dependent enzyme APA03_RS04965 PF13291 ACT domain APA03_RS04970 PF01272 Transcription elongation factor, GreA/GreB, C-term APA03_RS04970 PF03449 Transcription elongation factor, N-terminal APA03_RS04975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APA03_RS04975 PF02142 MGS-like domain APA03_RS04975 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APA03_RS04980 PF00117 Glutamine amidotransferase class-I APA03_RS04980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APA03_RS04990 PF01807 CHC2 zinc finger APA03_RS04990 PF08278 DNA primase DnaG DnaB-binding APA03_RS04990 PF08275 DNA primase catalytic core, N-terminal domain APA03_RS04990 PF13662 Toprim domain APA03_RS04990 PF10410 DnaB-helicase binding domain of primase APA03_RS04995 PF04545 Sigma-70, region 4 APA03_RS04995 PF00140 Sigma-70 factor, region 1.2 APA03_RS04995 PF04542 Sigma-70 region 2 APA03_RS04995 PF04546 Sigma-70, non-essential region APA03_RS04995 PF03979 Sigma-70 factor, region 1.1 APA03_RS04995 PF04539 Sigma-70 region 3 APA03_RS05005 PF01250 Ribosomal protein S6 APA03_RS05010 PF01084 Ribosomal protein S18 APA03_RS05015 PF01281 Ribosomal protein L9, N-terminal domain APA03_RS05015 PF03948 Ribosomal protein L9, C-terminal domain APA03_RS05025 PF00398 Ribosomal RNA adenine dimethylase APA03_RS05030 PF00639 PPIC-type PPIASE domain APA03_RS05030 PF09312 SurA N-terminal domain APA03_RS05035 PF04453 LPS transport system D APA03_RS05055 PF00664 ABC transporter transmembrane region APA03_RS05055 PF00005 ABC transporter APA03_RS05060 PF00392 Bacterial regulatory proteins, gntR family APA03_RS05060 PF07729 FCD domain APA03_RS05065 PF03776 Septum formation topological specificity factor MinE APA03_RS05070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APA03_RS05075 PF05209 Septum formation inhibitor MinC, N-terminal domain APA03_RS05075 PF03775 Septum formation inhibitor MinC, C-terminal domain APA03_RS05080 PF00043 Glutathione S-transferase, C-terminal domain APA03_RS05080 PF13417 Glutathione S-transferase, N-terminal domain APA03_RS05090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS05105 PF02559 CarD-like/TRCF domain APA03_RS05110 PF01062 Bestrophin, RFP-TM, chloride channel APA03_RS05115 PF00756 Putative esterase APA03_RS05130 PF00005 ABC transporter APA03_RS05145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS05145 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS05145 PF00989 PAS fold APA03_RS05155 PF08448 PAS fold APA03_RS05155 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS05155 PF13188 PAS domain APA03_RS05155 PF00072 Response regulator receiver domain APA03_RS05155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS05160 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS05160 PF08448 PAS fold APA03_RS05160 PF13188 PAS domain APA03_RS05160 PF00072 Response regulator receiver domain APA03_RS05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS05165 PF00227 Proteasome subunit APA03_RS05170 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS05170 PF10431 C-terminal, D2-small domain, of ClpB protein APA03_RS05170 PF07724 AAA domain (Cdc48 subfamily) APA03_RS05175 PF02657 Fe-S metabolism associated domain APA03_RS05180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APA03_RS05185 PF01799 [2Fe-2S] binding domain APA03_RS05185 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS05190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS05190 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APA03_RS05190 PF00034 Cytochrome c APA03_RS05195 PF01232 Mannitol dehydrogenase Rossmann domain APA03_RS05195 PF08125 Mannitol dehydrogenase C-terminal domain APA03_RS05200 PF01632 Ribosomal protein L35 APA03_RS05205 PF00453 Ribosomal protein L20 APA03_RS05210 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APA03_RS05210 PF01409 tRNA synthetases class II core domain (F) APA03_RS05215 PF03483 B3/4 domain APA03_RS05215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APA03_RS05215 PF01588 Putative tRNA binding domain APA03_RS05215 PF03147 Ferredoxin-fold anticodon binding domain APA03_RS05215 PF03484 tRNA synthetase B5 domain APA03_RS05220 PF12849 PBP superfamily domain APA03_RS05225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APA03_RS05235 PF00999 Sodium/hydrogen exchanger family APA03_RS05245 PF00163 Ribosomal protein S4/S9 N-terminal domain APA03_RS05245 PF01479 S4 domain APA03_RS05250 PF16658 Class II release factor RF3, C-terminal domain APA03_RS05250 PF03144 Elongation factor Tu domain 2 APA03_RS05250 PF00009 Elongation factor Tu GTP binding domain APA03_RS05260 PF00180 Isocitrate/isopropylmalate dehydrogenase APA03_RS05260 PF18324 Hypothetical protein TT1725 APA03_RS05265 PF01321 Creatinase/Prolidase N-terminal domain APA03_RS05265 PF00557 Metallopeptidase family M24 APA03_RS05275 PF13361 UvrD-like helicase C-terminal domain APA03_RS05275 PF00580 UvrD/REP helicase N-terminal domain APA03_RS05280 PF04002 RadC-like JAB domain APA03_RS05285 PF04002 RadC-like JAB domain APA03_RS05290 PF02222 ATP-grasp domain APA03_RS05290 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APA03_RS05295 PF00731 AIR carboxylase APA03_RS05315 PF00011 Hsp20/alpha crystallin family APA03_RS05320 PF01197 Ribosomal protein L31 APA03_RS05325 PF01741 Large-conductance mechanosensitive channel, MscL APA03_RS05335 PF02355 Protein export membrane protein APA03_RS05335 PF07549 SecD/SecF GG Motif APA03_RS05340 PF07549 SecD/SecF GG Motif APA03_RS05340 PF02355 Protein export membrane protein APA03_RS05345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APA03_RS05345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APA03_RS05350 PF02867 Ribonucleotide reductase, barrel domain APA03_RS05350 PF03477 ATP cone domain APA03_RS05350 PF00317 Ribonucleotide reductase, all-alpha domain APA03_RS05355 PF00268 Ribonucleotide reductase, small chain APA03_RS05365 PF00348 Polyprenyl synthetase APA03_RS05370 PF01177 Asp/Glu/Hydantoin racemase APA03_RS05375 PF00156 Phosphoribosyl transferase domain APA03_RS05385 PF00285 Citrate synthase, C-terminal domain APA03_RS05395 PF02153 Prephenate dehydrogenase APA03_RS05395 PF01817 Chorismate mutase type II APA03_RS05405 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APA03_RS05405 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APA03_RS05415 PF02463 RecF/RecN/SMC N terminal domain APA03_RS05420 PF13462 Thioredoxin APA03_RS05425 PF03471 Transporter associated domain APA03_RS05425 PF00571 CBS domain APA03_RS05430 PF02130 Uncharacterized protein family UPF0054 APA03_RS05435 PF02562 PhoH-like protein APA03_RS05440 PF01938 TRAM domain APA03_RS05440 PF04055 Radical SAM superfamily APA03_RS05440 PF00919 Uncharacterized protein family UPF0004 APA03_RS05450 PF07244 Surface antigen variable number repeat APA03_RS05450 PF17243 POTRA domain TamA domain 1 APA03_RS05450 PF01103 Surface antigen APA03_RS05465 PF01244 Membrane dipeptidase (Peptidase family M19) APA03_RS05470 PF02151 UvrB/uvrC motif APA03_RS05470 PF01541 GIY-YIG catalytic domain APA03_RS05470 PF12826 Helix-hairpin-helix motif APA03_RS05470 PF08459 UvrC Helix-hairpin-helix N-terminal APA03_RS05475 PF01066 CDP-alcohol phosphatidyltransferase APA03_RS05485 PF02597 ThiS family APA03_RS05490 PF02391 MoaE protein APA03_RS05495 PF00202 Aminotransferase class-III APA03_RS05500 PF00155 Aminotransferase class I and II APA03_RS05510 PF13649 Methyltransferase domain APA03_RS05515 PF01726 LexA DNA binding domain APA03_RS05515 PF00717 Peptidase S24-like APA03_RS05520 PF03453 MoeA N-terminal region (domain I and II) APA03_RS05520 PF00994 Probable molybdopterin binding domain APA03_RS05520 PF03454 MoeA C-terminal region (domain IV) APA03_RS05525 PF00471 Ribosomal protein L33 APA03_RS05535 PF00113 Enolase, C-terminal TIM barrel domain APA03_RS05535 PF03952 Enolase, N-terminal domain APA03_RS05545 PF01266 FAD dependent oxidoreductase APA03_RS05555 PF05690 Thiazole biosynthesis protein ThiG APA03_RS05560 PF02581 Thiamine monophosphate synthase APA03_RS05565 PF00270 DEAD/DEAH box helicase APA03_RS05565 PF17191 RecG wedge domain APA03_RS05565 PF00271 Helicase conserved C-terminal domain APA03_RS05570 PF03937 Flavinator of succinate dehydrogenase APA03_RS05575 PF17757 UvrB interaction domain APA03_RS05575 PF03461 TRCF domain APA03_RS05575 PF00271 Helicase conserved C-terminal domain APA03_RS05575 PF00270 DEAD/DEAH box helicase APA03_RS05575 PF02559 CarD-like/TRCF domain APA03_RS05590 PF13593 SBF-like CPA transporter family (DUF4137) APA03_RS05595 PF00282 Pyridoxal-dependent decarboxylase conserved domain APA03_RS05600 PF11775 Cobalamin biosynthesis protein CobT VWA domain APA03_RS05600 PF06213 Cobalamin biosynthesis protein CobT APA03_RS05605 PF12556 Cobaltochelatase CobS subunit N terminal APA03_RS05605 PF07728 AAA domain (dynein-related subfamily) APA03_RS05605 PF08406 CbbQ/NirQ/NorQ C-terminal APA03_RS05610 PF00226 DnaJ domain APA03_RS05610 PF00684 DnaJ central domain APA03_RS05610 PF01556 DnaJ C terminal domain APA03_RS05615 PF01722 BolA-like protein APA03_RS05625 PF03099 Biotin/lipoate A/B protein ligase family APA03_RS05635 PF00483 Nucleotidyl transferase APA03_RS05640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APA03_RS05640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APA03_RS05640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APA03_RS05640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APA03_RS05645 PF04055 Radical SAM superfamily APA03_RS05645 PF06463 Molybdenum Cofactor Synthesis C APA03_RS05650 PF08241 Methyltransferase domain APA03_RS05655 PF00156 Phosphoribosyl transferase domain APA03_RS05660 PF00462 Glutaredoxin APA03_RS05675 PF10282 Lactonase, 7-bladed beta-propeller APA03_RS05685 PF00696 Amino acid kinase family APA03_RS05685 PF13840 ACT domain APA03_RS05685 PF01842 ACT domain APA03_RS05690 PF03060 Nitronate monooxygenase APA03_RS05700 PF04551 GcpE protein APA03_RS05705 PF03129 Anticodon binding domain APA03_RS05705 PF13393 Histidyl-tRNA synthetase APA03_RS05710 PF03462 PCRF domain APA03_RS05710 PF00472 RF-1 domain APA03_RS05720 PF13847 Methyltransferase domain APA03_RS05720 PF17827 PrmC N-terminal domain APA03_RS05740 PF02673 Bacitracin resistance protein BacA APA03_RS05745 PF13520 Amino acid permease APA03_RS05760 PF13406 Transglycosylase SLT domain APA03_RS05765 PF05036 Sporulation related domain APA03_RS05765 PF03330 Lytic transglycolase APA03_RS05770 PF00768 D-alanyl-D-alanine carboxypeptidase APA03_RS05770 PF07943 Penicillin-binding protein 5, C-terminal domain APA03_RS05775 PF02223 Thymidylate kinase APA03_RS05785 PF08264 Anticodon-binding domain of tRNA APA03_RS05785 PF09334 tRNA synthetases class I (M) APA03_RS05790 PF01026 TatD related DNase APA03_RS05805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APA03_RS05805 PF01243 Pyridoxamine 5'-phosphate oxidase APA03_RS05815 PF01264 Chorismate synthase APA03_RS05820 PF02566 OsmC-like protein APA03_RS05825 PF06039 Malate:quinone oxidoreductase (Mqo) APA03_RS05835 PF06508 Queuosine biosynthesis protein QueC APA03_RS05845 PF06968 Biotin and Thiamin Synthesis associated domain APA03_RS05845 PF04055 Radical SAM superfamily APA03_RS05855 PF01507 Phosphoadenosine phosphosulfate reductase family APA03_RS05860 PF01507 Phosphoadenosine phosphosulfate reductase family APA03_RS05865 PF00009 Elongation factor Tu GTP binding domain APA03_RS05875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APA03_RS05875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APA03_RS05885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APA03_RS05890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APA03_RS05900 PF00459 Inositol monophosphatase family APA03_RS05910 PF02618 YceG-like family APA03_RS05915 PF00109 Beta-ketoacyl synthase, N-terminal domain APA03_RS05915 PF02801 Beta-ketoacyl synthase, C-terminal domain APA03_RS05920 PF00550 Phosphopantetheine attachment site APA03_RS05930 PF00698 Acyl transferase domain APA03_RS05955 PF00239 Resolvase, N terminal domain APA03_RS05955 PF02796 Helix-turn-helix domain of resolvase APA03_RS05960 PF09299 Mu transposase, C-terminal APA03_RS05960 PF00665 Integrase core domain APA03_RS05975 PF00313 'Cold-shock' DNA-binding domain APA03_RS05980 PF01668 SmpB protein APA03_RS05985 PF00701 Dihydrodipicolinate synthetase family APA03_RS05990 PF01817 Chorismate mutase type II APA03_RS05990 PF00800 Prephenate dehydratase APA03_RS05990 PF01842 ACT domain APA03_RS05995 PF02348 Cytidylyltransferase APA03_RS06000 PF00034 Cytochrome c APA03_RS06005 PF00459 Inositol monophosphatase family APA03_RS06010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APA03_RS06010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APA03_RS06015 PF01078 Magnesium chelatase, subunit ChlI APA03_RS06015 PF13335 Magnesium chelatase, subunit ChlI C-terminal APA03_RS06020 PF01053 Cys/Met metabolism PLP-dependent enzyme APA03_RS06025 PF00581 Rhodanese-like domain APA03_RS06030 PF01594 AI-2E family transporter APA03_RS06040 PF13396 Phospholipase_D-nuclease N-terminal APA03_RS06040 PF13091 PLD-like domain APA03_RS06045 PF02021 Uncharacterised protein family UPF0102 APA03_RS06055 PF00462 Glutaredoxin APA03_RS06060 PF01722 BolA-like protein APA03_RS06065 PF00586 AIR synthase related protein, N-terminal domain APA03_RS06065 PF02769 AIR synthase related protein, C-terminal domain APA03_RS06065 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APA03_RS06080 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APA03_RS06085 PF01259 SAICAR synthetase APA03_RS06090 PF10397 Adenylosuccinate lyase C-terminus APA03_RS06090 PF00206 Lyase APA03_RS06095 PF03741 Integral membrane protein TerC family APA03_RS06100 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APA03_RS06100 PF01464 Transglycosylase SLT domain APA03_RS06110 PF02464 Competence-damaged protein APA03_RS06125 PF04055 Radical SAM superfamily APA03_RS06130 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS06130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APA03_RS06135 PF02817 e3 binding domain APA03_RS06135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APA03_RS06135 PF00364 Biotin-requiring enzyme APA03_RS06140 PF02780 Transketolase, C-terminal domain APA03_RS06140 PF02779 Transketolase, pyrimidine binding domain APA03_RS06140 PF00364 Biotin-requiring enzyme APA03_RS06145 PF00676 Dehydrogenase E1 component APA03_RS06150 PF01967 MoaC family APA03_RS06155 PF00218 Indole-3-glycerol phosphate synthase APA03_RS06160 PF00591 Glycosyl transferase family, a/b domain APA03_RS06160 PF02885 Glycosyl transferase family, helical bundle domain APA03_RS06165 PF00117 Glutamine amidotransferase class-I APA03_RS06170 PF04715 Anthranilate synthase component I, N terminal region APA03_RS06170 PF00425 chorismate binding enzyme APA03_RS06180 PF00121 Triosephosphate isomerase APA03_RS06190 PF06418 CTP synthase N-terminus APA03_RS06190 PF00117 Glutamine amidotransferase class-I APA03_RS06195 PF00793 DAHP synthetase I family APA03_RS06200 PF00204 DNA gyrase B APA03_RS06200 PF01751 Toprim domain APA03_RS06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS06200 PF00986 DNA gyrase B subunit, carboxyl terminus APA03_RS06205 PF02463 RecF/RecN/SMC N terminal domain APA03_RS06210 PF02768 DNA polymerase III beta subunit, C-terminal domain APA03_RS06210 PF02767 DNA polymerase III beta subunit, central domain APA03_RS06210 PF00712 DNA polymerase III beta subunit, N-terminal domain APA03_RS06215 PF08299 Bacterial dnaA protein helix-turn-helix APA03_RS06215 PF00308 Bacterial dnaA protein APA03_RS06215 PF11638 DnaA N-terminal domain APA03_RS06220 PF01649 Ribosomal protein S20 APA03_RS06225 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APA03_RS06225 PF06827 Zinc finger found in FPG and IleRS APA03_RS06225 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APA03_RS06230 PF01209 ubiE/COQ5 methyltransferase family APA03_RS06235 PF02441 Flavoprotein APA03_RS06235 PF04127 DNA / pantothenate metabolism flavoprotein APA03_RS06240 PF00692 dUTPase APA03_RS06245 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS06250 PF00005 ABC transporter APA03_RS06255 PF01625 Peptide methionine sulfoxide reductase APA03_RS06260 PF10458 Valyl tRNA synthetase tRNA binding arm APA03_RS06260 PF08264 Anticodon-binding domain of tRNA APA03_RS06260 PF00133 tRNA synthetases class I (I, L, M and V) APA03_RS06270 PF02321 Outer membrane efflux protein APA03_RS06310 PF00586 AIR synthase related protein, N-terminal domain APA03_RS06310 PF02769 AIR synthase related protein, C-terminal domain APA03_RS06315 PF01029 NusB family APA03_RS06320 PF03477 ATP cone domain APA03_RS06330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APA03_RS06330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APA03_RS06335 PF00230 Major intrinsic protein APA03_RS06340 PF01266 FAD dependent oxidoreductase APA03_RS06340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APA03_RS06345 PF08220 DeoR-like helix-turn-helix domain APA03_RS06345 PF00455 DeoR C terminal sensor domain APA03_RS06350 PF00570 HRDC domain APA03_RS06350 PF09382 RQC domain APA03_RS06350 PF00271 Helicase conserved C-terminal domain APA03_RS06350 PF16124 RecQ zinc-binding APA03_RS06350 PF00270 DEAD/DEAH box helicase APA03_RS06360 PF00664 ABC transporter transmembrane region APA03_RS06360 PF00005 ABC transporter APA03_RS06365 PF00005 ABC transporter APA03_RS06365 PF00664 ABC transporter transmembrane region APA03_RS06370 PF07568 Histidine kinase APA03_RS06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS06370 PF12282 Signal transduction histidine kinase APA03_RS06380 PF08281 Sigma-70, region 4 APA03_RS06380 PF04542 Sigma-70 region 2 APA03_RS06385 PF08281 Sigma-70, region 4 APA03_RS06385 PF04542 Sigma-70 region 2 APA03_RS06390 PF00072 Response regulator receiver domain APA03_RS06395 PF16326 ABC transporter C-terminal domain APA03_RS06395 PF00005 ABC transporter APA03_RS06400 PF01204 Trehalase APA03_RS06405 PF00107 Zinc-binding dehydrogenase APA03_RS06405 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS06410 PF08274 PhnA Zinc-Ribbon APA03_RS06410 PF03831 PhnA domain APA03_RS06425 PF02567 Phenazine biosynthesis-like protein APA03_RS06430 PF01979 Amidohydrolase family APA03_RS06445 PF00005 ABC transporter APA03_RS06460 PF01979 Amidohydrolase family APA03_RS06470 PF07687 Peptidase dimerisation domain APA03_RS06470 PF01546 Peptidase family M20/M25/M40 APA03_RS06475 PF00266 Aminotransferase class-V APA03_RS06490 PF01425 Amidase APA03_RS06500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APA03_RS06500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APA03_RS06505 PF01799 [2Fe-2S] binding domain APA03_RS06505 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS06510 PF00860 Permease family APA03_RS06515 PF00576 HIUase/Transthyretin family APA03_RS06530 PF13454 FAD-NAD(P)-binding APA03_RS06540 PF01979 Amidohydrolase family APA03_RS06550 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS06555 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS06560 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS06575 PF13533 Biotin-lipoyl like APA03_RS06580 PF00005 ABC transporter APA03_RS06595 PF03466 LysR substrate binding domain APA03_RS06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS06600 PF03601 Conserved hypothetical protein 698 APA03_RS06610 PF13249 Squalene-hopene cyclase N-terminal domain APA03_RS06610 PF13243 Squalene-hopene cyclase C-terminal domain APA03_RS06615 PF00440 Bacterial regulatory proteins, tetR family APA03_RS06615 PF17754 MftR C-terminal domain APA03_RS06630 PF06965 Na+/H+ antiporter 1 APA03_RS06635 PF00171 Aldehyde dehydrogenase family APA03_RS06640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APA03_RS06645 PF01638 HxlR-like helix-turn-helix APA03_RS06650 PF06628 Catalase-related immune-responsive APA03_RS06650 PF18011 C-terminal domain found in long catalases APA03_RS06650 PF00199 Catalase APA03_RS06655 PF00472 RF-1 domain APA03_RS06670 PF01979 Amidohydrolase family APA03_RS06670 PF13382 Adenine deaminase C-terminal domain APA03_RS06675 PF00583 Acetyltransferase (GNAT) family APA03_RS06680 PF08543 Phosphomethylpyrimidine kinase APA03_RS06695 PF07715 TonB-dependent Receptor Plug Domain APA03_RS06695 PF00593 TonB dependent receptor APA03_RS06705 PF06472 ABC transporter transmembrane region 2 APA03_RS06705 PF00005 ABC transporter APA03_RS06720 PF00012 Hsp70 protein APA03_RS06725 PF02321 Outer membrane efflux protein APA03_RS06730 PF00873 AcrB/AcrD/AcrF family APA03_RS06760 PF07690 Major Facilitator Superfamily APA03_RS06765 PF04909 Amidohydrolase APA03_RS06790 PF04073 Aminoacyl-tRNA editing domain APA03_RS06795 PF07690 Major Facilitator Superfamily APA03_RS06810 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS06815 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS06830 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS06845 PF07715 TonB-dependent Receptor Plug Domain APA03_RS06845 PF00593 TonB dependent receptor APA03_RS06850 PF01609 Transposase DDE domain APA03_RS06855 PF00593 TonB dependent receptor APA03_RS06855 PF07715 TonB-dependent Receptor Plug Domain APA03_RS06865 PF04542 Sigma-70 region 2 APA03_RS06865 PF12680 SnoaL-like domain APA03_RS06865 PF08281 Sigma-70, region 4 APA03_RS06870 PF07715 TonB-dependent Receptor Plug Domain APA03_RS06870 PF00593 TonB dependent receptor APA03_RS06885 PF04545 Sigma-70, region 4 APA03_RS06885 PF04539 Sigma-70 region 3 APA03_RS06885 PF04542 Sigma-70 region 2 APA03_RS06890 PF09084 NMT1/THI5 like APA03_RS06895 PF00005 ABC transporter APA03_RS06900 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS06910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APA03_RS06930 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS06940 PF07690 Major Facilitator Superfamily APA03_RS06955 PF07690 Major Facilitator Superfamily APA03_RS06965 PF07690 Major Facilitator Superfamily APA03_RS06970 PF03466 LysR substrate binding domain APA03_RS06970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS06975 PF00920 Dehydratase family APA03_RS06980 PF03328 HpcH/HpaI aldolase/citrate lyase family APA03_RS06985 PF01979 Amidohydrolase family APA03_RS06985 PF13382 Adenine deaminase C-terminal domain APA03_RS06995 PF01979 Amidohydrolase family APA03_RS07000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS07005 PF00465 Iron-containing alcohol dehydrogenase APA03_RS07010 PF00083 Sugar (and other) transporter APA03_RS07015 PF00171 Aldehyde dehydrogenase family APA03_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS07030 PF00005 ABC transporter APA03_RS07035 PF01402 Ribbon-helix-helix protein, copG family APA03_RS07035 PF08753 NikR C terminal nickel binding domain APA03_RS07045 PF09347 Domain of unknown function (DUF1989) APA03_RS07050 PF02785 Biotin carboxylase C-terminal domain APA03_RS07050 PF00289 Biotin carboxylase, N-terminal domain APA03_RS07050 PF00364 Biotin-requiring enzyme APA03_RS07050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APA03_RS07055 PF01425 Amidase APA03_RS07060 PF07859 alpha/beta hydrolase fold APA03_RS07065 PF13086 AAA domain APA03_RS07065 PF13087 AAA domain APA03_RS07065 PF13195 Protein of unknown function (DUF4011) APA03_RS07065 PF13087 AAA domain APA03_RS07065 PF13086 AAA domain APA03_RS07065 PF13195 Protein of unknown function (DUF4011) APA03_RS07075 PF07715 TonB-dependent Receptor Plug Domain APA03_RS07075 PF00593 TonB dependent receptor APA03_RS07085 PF00593 TonB dependent receptor APA03_RS07085 PF07715 TonB-dependent Receptor Plug Domain APA03_RS07100 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS07120 PF00296 Luciferase-like monooxygenase APA03_RS07130 PF01613 Flavin reductase like domain APA03_RS07145 PF00296 Luciferase-like monooxygenase APA03_RS07150 PF00296 Luciferase-like monooxygenase APA03_RS07165 PF00881 Nitroreductase family APA03_RS07200 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APA03_RS07200 PF11867 Domain of unknown function (DUF3387) APA03_RS07200 PF18766 SWI2/SNF2 ATPase APA03_RS07210 PF11867 Domain of unknown function (DUF3387) APA03_RS07210 PF18766 SWI2/SNF2 ATPase APA03_RS07210 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APA03_RS07230 PF05717 IS66 Orf2 like protein APA03_RS07235 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS07235 PF13007 Transposase C of IS166 homeodomain APA03_RS07235 PF13817 IS66 C-terminal element APA03_RS07235 PF03050 Transposase IS66 family APA03_RS07245 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS07245 PF13007 Transposase C of IS166 homeodomain APA03_RS07245 PF03050 Transposase IS66 family APA03_RS07245 PF13817 IS66 C-terminal element APA03_RS07255 PF01527 Transposase APA03_RS07290 PF17755 UvrA DNA-binding domain APA03_RS07295 PF00375 Sodium:dicarboxylate symporter family APA03_RS07300 PF05724 Thiopurine S-methyltransferase (TPMT) APA03_RS07305 PF04399 Glutaredoxin 2, C terminal domain APA03_RS07305 PF13417 Glutathione S-transferase, N-terminal domain APA03_RS07310 PF07690 Major Facilitator Superfamily APA03_RS07315 PF01888 CbiD APA03_RS07320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS07330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS07335 PF02571 Precorrin-6x reductase CbiJ/CobK APA03_RS07340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS07345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS07350 PF02570 Precorrin-8X methylmutase APA03_RS07355 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APA03_RS07365 PF10415 Fumarase C C-terminus APA03_RS07365 PF00206 Lyase APA03_RS07375 PF00158 Sigma-54 interaction domain APA03_RS07375 PF02954 Bacterial regulatory protein, Fis family APA03_RS07375 PF06505 Activator of aromatic catabolism APA03_RS07375 PF02830 V4R domain APA03_RS07385 PF01011 PQQ enzyme repeat APA03_RS07415 PF01594 AI-2E family transporter APA03_RS07425 PF00871 Acetokinase family APA03_RS07430 PF01515 Phosphate acetyl/butaryl transferase APA03_RS07435 PF01070 FMN-dependent dehydrogenase APA03_RS07440 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APA03_RS07440 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APA03_RS07440 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APA03_RS07440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS07440 PF10371 Domain of unknown function APA03_RS07445 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS07445 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APA03_RS07460 PF02659 Putative manganese efflux pump APA03_RS07465 PF14497 Glutathione S-transferase, C-terminal domain APA03_RS07465 PF02798 Glutathione S-transferase, N-terminal domain APA03_RS07470 PF02634 FdhD/NarQ family APA03_RS07475 PF12804 MobA-like NTP transferase domain APA03_RS07480 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APA03_RS07485 PF03453 MoeA N-terminal region (domain I and II) APA03_RS07485 PF03454 MoeA C-terminal region (domain IV) APA03_RS07485 PF00994 Probable molybdopterin binding domain APA03_RS07490 PF04216 Protein involved in formate dehydrogenase formation APA03_RS07495 PF01292 Prokaryotic cytochrome b561 APA03_RS07500 PF09163 Formate dehydrogenase N, transmembrane APA03_RS07500 PF13247 4Fe-4S dicluster domain APA03_RS07505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APA03_RS07505 PF01568 Molydopterin dinucleotide binding domain APA03_RS07505 PF00384 Molybdopterin oxidoreductase APA03_RS07515 PF02541 Ppx/GppA phosphatase family APA03_RS07520 PF01728 FtsJ-like methyltransferase APA03_RS07525 PF00480 ROK family APA03_RS07530 PF01206 Sulfurtransferase TusA APA03_RS07535 PF02609 Exonuclease VII small subunit APA03_RS07540 PF00348 Polyprenyl synthetase APA03_RS07545 PF02780 Transketolase, C-terminal domain APA03_RS07545 PF02779 Transketolase, pyrimidine binding domain APA03_RS07545 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APA03_RS07550 PF01479 S4 domain APA03_RS07550 PF01728 FtsJ-like methyltransferase APA03_RS07560 PF04055 Radical SAM superfamily APA03_RS07565 PF00764 Arginosuccinate synthase APA03_RS07570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APA03_RS07570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APA03_RS07580 PF00579 tRNA synthetases class I (W and Y) APA03_RS07595 PF00486 Transcriptional regulatory protein, C terminal APA03_RS07595 PF00072 Response regulator receiver domain APA03_RS07610 PF01029 NusB family APA03_RS07610 PF01189 16S rRNA methyltransferase RsmB/F APA03_RS07615 PF00478 IMP dehydrogenase / GMP reductase domain APA03_RS07615 PF00571 CBS domain APA03_RS07620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APA03_RS07625 PF12911 N-terminal TM domain of oligopeptide transport permease C APA03_RS07625 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS07630 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS07635 PF00005 ABC transporter APA03_RS07635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APA03_RS07640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APA03_RS07640 PF00005 ABC transporter APA03_RS07645 PF03060 Nitronate monooxygenase APA03_RS07650 PF01569 PAP2 superfamily APA03_RS07665 PF04185 Phosphoesterase family APA03_RS07665 PF05506 Domain of unknown function (DUF756) APA03_RS07690 PF07690 Major Facilitator Superfamily APA03_RS07705 PF03551 Transcriptional regulator PadR-like family APA03_RS07715 PF00529 HlyD membrane-fusion protein of T1SS APA03_RS07715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APA03_RS07720 PF04632 Fusaric acid resistance protein family APA03_RS07730 PF02310 B12 binding domain APA03_RS07730 PF13282 Domain of unknown function (DUF4070) APA03_RS07730 PF04055 Radical SAM superfamily APA03_RS07740 PF00593 TonB dependent receptor APA03_RS07740 PF07715 TonB-dependent Receptor Plug Domain APA03_RS07745 PF05552 Conserved TM helix APA03_RS07745 PF00924 Mechanosensitive ion channel APA03_RS07750 PF07995 Glucose / Sorbosone dehydrogenase APA03_RS07755 PF07995 Glucose / Sorbosone dehydrogenase APA03_RS07765 PF02322 Cytochrome bd terminal oxidase subunit II APA03_RS07770 PF01654 Cytochrome bd terminal oxidase subunit I APA03_RS07775 PF00005 ABC transporter APA03_RS07775 PF00664 ABC transporter transmembrane region APA03_RS07780 PF00005 ABC transporter APA03_RS07780 PF00664 ABC transporter transmembrane region APA03_RS07790 PF13640 2OG-Fe(II) oxygenase superfamily APA03_RS07790 PF18331 PKHD-type hydroxylase C-terminal domain APA03_RS07795 PF00593 TonB dependent receptor APA03_RS07795 PF07715 TonB-dependent Receptor Plug Domain APA03_RS07805 PF01609 Transposase DDE domain APA03_RS07815 PF00710 Asparaginase, N-terminal APA03_RS07815 PF17763 Glutaminase/Asparaginase C-terminal domain APA03_RS07820 PF00155 Aminotransferase class I and II APA03_RS07825 PF02080 TrkA-C domain APA03_RS07825 PF06826 Predicted Permease Membrane Region APA03_RS07860 PF12848 ABC transporter APA03_RS07860 PF00005 ABC transporter APA03_RS07865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS07865 PF03466 LysR substrate binding domain APA03_RS07880 PF00593 TonB dependent receptor APA03_RS07880 PF07715 TonB-dependent Receptor Plug Domain APA03_RS07885 PF00107 Zinc-binding dehydrogenase APA03_RS07885 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS07900 PF05974 Domain of unknown function (DUF892) APA03_RS07910 PF02308 MgtC family APA03_RS07925 PF02515 CoA-transferase family III APA03_RS07935 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS07935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS07935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS07940 PF02515 CoA-transferase family III APA03_RS07975 PF07690 Major Facilitator Superfamily APA03_RS07980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APA03_RS07980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APA03_RS07980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APA03_RS07980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APA03_RS07985 PF12464 Maltose acetyltransferase APA03_RS07985 PF14602 Hexapeptide repeat of succinyl-transferase APA03_RS08000 PF13333 Integrase core domain APA03_RS08000 PF00665 Integrase core domain APA03_RS08000 PF13276 HTH-like domain APA03_RS08005 PF01527 Transposase APA03_RS08030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS08030 PF08521 Two-component sensor kinase N-terminal APA03_RS08030 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS08035 PF00486 Transcriptional regulatory protein, C terminal APA03_RS08035 PF00072 Response regulator receiver domain APA03_RS08040 PF00873 AcrB/AcrD/AcrF family APA03_RS08105 PF00501 AMP-binding enzyme APA03_RS08115 PF00155 Aminotransferase class I and II APA03_RS08130 PF00149 Calcineurin-like phosphoesterase APA03_RS08155 PF13419 Haloacid dehalogenase-like hydrolase APA03_RS08160 PF14602 Hexapeptide repeat of succinyl-transferase APA03_RS08160 PF00132 Bacterial transferase hexapeptide (six repeats) APA03_RS08160 PF12804 MobA-like NTP transferase domain APA03_RS08165 PF01380 SIS domain APA03_RS08175 PF01609 Transposase DDE domain APA03_RS08190 PF01609 Transposase DDE domain APA03_RS08215 PF00255 Glutathione peroxidase APA03_RS08220 PF00005 ABC transporter APA03_RS08225 PF12704 MacB-like periplasmic core domain APA03_RS08225 PF02687 FtsX-like permease family APA03_RS08230 PF03129 Anticodon binding domain APA03_RS08230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APA03_RS08235 PF12706 Beta-lactamase superfamily domain APA03_RS08235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APA03_RS08235 PF17770 Ribonuclease J C-terminal domain APA03_RS08240 PF03309 Type III pantothenate kinase APA03_RS08245 PF02237 Biotin protein ligase C terminal domain APA03_RS08245 PF03099 Biotin/lipoate A/B protein ligase family APA03_RS08250 PF00361 Proton-conducting membrane transporter APA03_RS08255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APA03_RS08255 PF00361 Proton-conducting membrane transporter APA03_RS08260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APA03_RS08265 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APA03_RS08270 PF12838 4Fe-4S dicluster domain APA03_RS08275 PF00146 NADH dehydrogenase APA03_RS08280 PF00384 Molybdopterin oxidoreductase APA03_RS08280 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APA03_RS08280 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APA03_RS08285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APA03_RS08285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APA03_RS08285 PF10531 SLBB domain APA03_RS08295 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APA03_RS08300 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APA03_RS08305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APA03_RS08310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APA03_RS08330 PF00216 Bacterial DNA-binding protein APA03_RS08335 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS08335 PF05362 Lon protease (S16) C-terminal proteolytic domain APA03_RS08335 PF02190 ATP-dependent protease La (LON) substrate-binding domain APA03_RS08340 PF07724 AAA domain (Cdc48 subfamily) APA03_RS08340 PF10431 C-terminal, D2-small domain, of ClpB protein APA03_RS08340 PF06689 ClpX C4-type zinc finger APA03_RS08345 PF00574 Clp protease APA03_RS08350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APA03_RS08350 PF05698 Bacterial trigger factor protein (TF) C-terminus APA03_RS08350 PF05697 Bacterial trigger factor protein (TF) APA03_RS08360 PF01256 Carbohydrate kinase APA03_RS08360 PF03853 YjeF-related protein N-terminus APA03_RS08375 PF00271 Helicase conserved C-terminal domain APA03_RS08375 PF00270 DEAD/DEAH box helicase APA03_RS08380 PF05958 tRNA (Uracil-5-)-methyltransferase APA03_RS08385 PF01521 Iron-sulphur cluster biosynthesis APA03_RS08390 PF01883 Iron-sulfur cluster assembly protein APA03_RS08400 PF00266 Aminotransferase class-V APA03_RS08405 PF01458 Uncharacterized protein family (UPF0051) APA03_RS08410 PF00005 ABC transporter APA03_RS08415 PF01458 Uncharacterized protein family (UPF0051) APA03_RS08420 PF02082 Transcriptional regulator APA03_RS08425 PF04286 Protein of unknown function (DUF445) APA03_RS08430 PF00311 Phosphoenolpyruvate carboxylase APA03_RS08440 PF00679 Elongation factor G C-terminus APA03_RS08440 PF14492 Elongation Factor G, domain II APA03_RS08440 PF03764 Elongation factor G, domain IV APA03_RS08440 PF00009 Elongation factor Tu GTP binding domain APA03_RS08440 PF03144 Elongation factor Tu domain 2 APA03_RS08445 PF00830 Ribosomal L28 family APA03_RS08455 PF00664 ABC transporter transmembrane region APA03_RS08455 PF00005 ABC transporter APA03_RS08465 PF01966 HD domain APA03_RS08465 PF08335 GlnD PII-uridylyltransferase APA03_RS08470 PF05188 MutS domain II APA03_RS08470 PF05190 MutS family domain IV APA03_RS08470 PF01624 MutS domain I APA03_RS08470 PF00488 MutS domain V APA03_RS08470 PF05192 MutS domain III APA03_RS08480 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APA03_RS08490 PF00291 Pyridoxal-phosphate dependent enzyme APA03_RS08490 PF14821 Threonine synthase N terminus APA03_RS08495 PF05193 Peptidase M16 inactive domain APA03_RS08495 PF00675 Insulinase (Peptidase family M16) APA03_RS08500 PF01523 Putative modulator of DNA gyrase APA03_RS08515 PF01040 UbiA prenyltransferase family APA03_RS08520 PF00115 Cytochrome C and Quinol oxidase polypeptide I APA03_RS08525 PF01209 ubiE/COQ5 methyltransferase family APA03_RS08530 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APA03_RS08530 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APA03_RS08545 PF01037 Lrp/AsnC ligand binding domain APA03_RS08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS08555 PF03466 LysR substrate binding domain APA03_RS08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS08560 PF05443 ROS/MUCR transcriptional regulator protein APA03_RS08565 PF00216 Bacterial DNA-binding protein APA03_RS08575 PF03023 Lipid II flippase MurJ APA03_RS08590 PF13411 MerR HTH family regulatory protein APA03_RS08595 PF00216 Bacterial DNA-binding protein APA03_RS08600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APA03_RS08600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APA03_RS08605 PF02504 Fatty acid synthesis protein APA03_RS08610 PF01783 Ribosomal L32p protein family APA03_RS08625 PF00672 HAMP domain APA03_RS08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS08625 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS08630 PF00072 Response regulator receiver domain APA03_RS08630 PF00486 Transcriptional regulatory protein, C terminal APA03_RS08635 PF12802 MarR family APA03_RS08645 PF01327 Polypeptide deformylase APA03_RS08650 PF01165 Ribosomal protein S21 APA03_RS08655 PF00180 Isocitrate/isopropylmalate dehydrogenase APA03_RS08660 PF00694 Aconitase C-terminal domain APA03_RS08665 PF00330 Aconitase family (aconitate hydratase) APA03_RS08670 PF01245 Ribosomal protein L19 APA03_RS08675 PF01746 tRNA (Guanine-1)-methyltransferase APA03_RS08680 PF01782 RimM N-terminal domain APA03_RS08685 PF00886 Ribosomal protein S16 APA03_RS08690 PF00448 SRP54-type protein, GTPase domain APA03_RS08690 PF02881 SRP54-type protein, helical bundle domain APA03_RS08690 PF02978 Signal peptide binding domain APA03_RS08710 PF00849 RNA pseudouridylate synthase APA03_RS08710 PF01479 S4 domain APA03_RS08715 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS08715 PF16193 AAA C-terminal domain APA03_RS08715 PF12002 MgsA AAA+ ATPase C terminal APA03_RS08725 PF01040 UbiA prenyltransferase family APA03_RS08730 PF04452 RNA methyltransferase APA03_RS08735 PF04107 Glutamate-cysteine ligase family 2(GCS2) APA03_RS08740 PF07690 Major Facilitator Superfamily APA03_RS08745 PF01926 50S ribosome-binding GTPase APA03_RS08745 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APA03_RS08750 PF13360 PQQ-like domain APA03_RS08770 PF13439 Glycosyltransferase Family 4 APA03_RS08770 PF00534 Glycosyl transferases group 1 APA03_RS08775 PF00733 Asparagine synthase APA03_RS08775 PF13537 Glutamine amidotransferase domain APA03_RS08785 PF01502 Phosphoribosyl-AMP cyclohydrolase APA03_RS08790 PF02684 Lipid-A-disaccharide synthetase APA03_RS08795 PF00916 Sulfate permease family APA03_RS08795 PF01740 STAS domain APA03_RS08800 PF01794 Ferric reductase like transmembrane component APA03_RS08815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APA03_RS08815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APA03_RS08820 PF07724 AAA domain (Cdc48 subfamily) APA03_RS08820 PF02861 Clp amino terminal domain, pathogenicity island component APA03_RS08820 PF10431 C-terminal, D2-small domain, of ClpB protein APA03_RS08820 PF17871 AAA lid domain APA03_RS08820 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS08825 PF00293 NUDIX domain APA03_RS08830 PF16360 GTP-binding GTPase Middle Region APA03_RS08830 PF13167 GTP-binding GTPase N-terminal APA03_RS08830 PF01926 50S ribosome-binding GTPase APA03_RS08835 PF17209 Hfq protein APA03_RS08840 PF02954 Bacterial regulatory protein, Fis family APA03_RS08840 PF00072 Response regulator receiver domain APA03_RS08840 PF00158 Sigma-54 interaction domain APA03_RS08845 PF00672 HAMP domain APA03_RS08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS08850 PF00158 Sigma-54 interaction domain APA03_RS08850 PF00072 Response regulator receiver domain APA03_RS08850 PF02954 Bacterial regulatory protein, Fis family APA03_RS08855 PF00989 PAS fold APA03_RS08855 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS08860 PF01207 Dihydrouridine synthase (Dus) APA03_RS08865 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APA03_RS08865 PF02542 YgbB family APA03_RS08870 PF00535 Glycosyl transferase family 2 APA03_RS08885 PF03275 UDP-galactopyranose mutase APA03_RS08910 PF00156 Phosphoribosyl transferase domain APA03_RS08935 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APA03_RS08935 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APA03_RS08935 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APA03_RS08945 PF00543 Nitrogen regulatory protein P-II APA03_RS08950 PF00132 Bacterial transferase hexapeptide (six repeats) APA03_RS08950 PF06426 Serine acetyltransferase, N-terminal APA03_RS08955 PF01494 FAD binding domain APA03_RS08960 PF09335 SNARE associated Golgi protein APA03_RS08995 PF13358 DDE superfamily endonuclease APA03_RS09000 PF02371 Transposase IS116/IS110/IS902 family APA03_RS09000 PF01548 Transposase APA03_RS09010 PF09285 Elongation factor P, C-terminal APA03_RS09010 PF08207 Elongation factor P (EF-P) KOW-like domain APA03_RS09010 PF01132 Elongation factor P (EF-P) OB domain APA03_RS09015 PF00459 Inositol monophosphatase family APA03_RS09020 PF13307 Helicase C-terminal domain APA03_RS09020 PF04851 Type III restriction enzyme, res subunit APA03_RS09025 PF00313 'Cold-shock' DNA-binding domain APA03_RS09030 PF01738 Dienelactone hydrolase family APA03_RS09035 PF00166 Chaperonin 10 Kd subunit APA03_RS09040 PF00118 TCP-1/cpn60 chaperonin family APA03_RS09050 PF01527 Transposase APA03_RS09060 PF13007 Transposase C of IS166 homeodomain APA03_RS09060 PF13817 IS66 C-terminal element APA03_RS09060 PF03050 Transposase IS66 family APA03_RS09060 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS09075 PF13276 HTH-like domain APA03_RS09075 PF00665 Integrase core domain APA03_RS09075 PF13333 Integrase core domain APA03_RS09080 PF01527 Transposase APA03_RS09150 PF00483 Nucleotidyl transferase APA03_RS09155 PF16363 GDP-mannose 4,6 dehydratase APA03_RS09160 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS09215 PF13817 IS66 C-terminal element APA03_RS09215 PF03050 Transposase IS66 family APA03_RS09215 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS09215 PF13007 Transposase C of IS166 homeodomain APA03_RS09225 PF01527 Transposase APA03_RS09245 PF00909 Ammonium Transporter Family APA03_RS09260 PF00561 alpha/beta hydrolase fold APA03_RS09265 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS09265 PF00589 Phage integrase family APA03_RS09270 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APA03_RS09270 PF17764 3′ DNA-binding domain (3′BD) APA03_RS09270 PF00270 DEAD/DEAH box helicase APA03_RS09270 PF18074 Primosomal protein N C-terminal domain APA03_RS09275 PF02699 Preprotein translocase subunit APA03_RS09285 PF00355 Rieske [2Fe-2S] domain APA03_RS09290 PF00293 NUDIX domain APA03_RS09295 PF01050 Mannose-6-phosphate isomerase APA03_RS09295 PF00483 Nucleotidyl transferase APA03_RS09305 PF01053 Cys/Met metabolism PLP-dependent enzyme APA03_RS09310 PF04379 ApaG domain APA03_RS09315 PF01227 GTP cyclohydrolase I APA03_RS09325 PF00994 Probable molybdopterin binding domain APA03_RS09355 PF13533 Biotin-lipoyl like APA03_RS09385 PF00885 6,7-dimethyl-8-ribityllumazine synthase APA03_RS09390 PF00925 GTP cyclohydrolase II APA03_RS09390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APA03_RS09395 PF00677 Lumazine binding domain APA03_RS09400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APA03_RS09400 PF01872 RibD C-terminal domain APA03_RS09405 PF00032 Cytochrome b(C-terminal)/b6/petD APA03_RS09405 PF02167 Cytochrome C1 family APA03_RS09405 PF00033 Cytochrome b/b6/petB APA03_RS09410 PF02167 Cytochrome C1 family APA03_RS09410 PF00032 Cytochrome b(C-terminal)/b6/petD APA03_RS09410 PF00033 Cytochrome b/b6/petB APA03_RS09415 PF00355 Rieske [2Fe-2S] domain APA03_RS09415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APA03_RS09420 PF03358 NADPH-dependent FMN reductase APA03_RS09435 PF00860 Permease family APA03_RS09450 PF07859 alpha/beta hydrolase fold APA03_RS09490 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APA03_RS09490 PF04851 Type III restriction enzyme, res subunit APA03_RS09490 PF00271 Helicase conserved C-terminal domain APA03_RS09490 PF08463 EcoEI R protein C-terminal APA03_RS09510 PF13276 HTH-like domain APA03_RS09510 PF00665 Integrase core domain APA03_RS09510 PF13333 Integrase core domain APA03_RS09515 PF01527 Transposase APA03_RS09540 PF00829 Ribosomal prokaryotic L21 protein APA03_RS09545 PF01016 Ribosomal L27 protein APA03_RS09550 PF01018 GTP1/OBG APA03_RS09550 PF01926 50S ribosome-binding GTPase APA03_RS09555 PF00696 Amino acid kinase family APA03_RS09555 PF01472 PUA domain APA03_RS09565 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) APA03_RS09570 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APA03_RS09570 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APA03_RS09580 PF07859 alpha/beta hydrolase fold APA03_RS09590 PF02381 MraZ protein, putative antitoxin-like APA03_RS09595 PF01795 MraW methylase family APA03_RS09605 PF00905 Penicillin binding protein transpeptidase domain APA03_RS09605 PF03717 Penicillin-binding Protein dimerisation domain APA03_RS09610 PF01225 Mur ligase family, catalytic domain APA03_RS09610 PF08245 Mur ligase middle domain APA03_RS09610 PF02875 Mur ligase family, glutamate ligase domain APA03_RS09615 PF01225 Mur ligase family, catalytic domain APA03_RS09615 PF02875 Mur ligase family, glutamate ligase domain APA03_RS09615 PF08245 Mur ligase middle domain APA03_RS09620 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APA03_RS09620 PF00953 Glycosyl transferase family 4 APA03_RS09625 PF02875 Mur ligase family, glutamate ligase domain APA03_RS09625 PF08245 Mur ligase middle domain APA03_RS09630 PF01098 Cell cycle protein APA03_RS09635 PF03033 Glycosyltransferase family 28 N-terminal domain APA03_RS09635 PF04101 Glycosyltransferase family 28 C-terminal domain APA03_RS09640 PF02875 Mur ligase family, glutamate ligase domain APA03_RS09640 PF01225 Mur ligase family, catalytic domain APA03_RS09640 PF08245 Mur ligase middle domain APA03_RS09645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APA03_RS09645 PF01565 FAD binding domain APA03_RS09650 PF07478 D-ala D-ala ligase C-terminus APA03_RS09650 PF01820 D-ala D-ala ligase N-terminus APA03_RS09655 PF03799 Cell division protein FtsQ APA03_RS09655 PF08478 POTRA domain, FtsQ-type APA03_RS09660 PF02491 SHS2 domain inserted in FTSA APA03_RS09665 PF12327 FtsZ family, C-terminal domain APA03_RS09665 PF00091 Tubulin/FtsZ family, GTPase domain APA03_RS09670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APA03_RS09675 PF13525 Outer membrane lipoprotein APA03_RS09680 PF02463 RecF/RecN/SMC N terminal domain APA03_RS09685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APA03_RS09685 PF12826 Helix-hairpin-helix motif APA03_RS09685 PF00533 BRCA1 C Terminus (BRCT) domain APA03_RS09685 PF03120 NAD-dependent DNA ligase OB-fold domain APA03_RS09685 PF01653 NAD-dependent DNA ligase adenylation domain APA03_RS09690 PF00391 PEP-utilising enzyme, mobile domain APA03_RS09690 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APA03_RS09690 PF02896 PEP-utilising enzyme, TIM barrel domain APA03_RS09695 PF03618 Kinase/pyrophosphorylase APA03_RS09705 PF01205 Uncharacterized protein family UPF0029 APA03_RS09720 PF01474 Class-II DAHP synthetase family APA03_RS09735 PF00749 tRNA synthetases class I (E and Q), catalytic domain APA03_RS09740 PF00857 Isochorismatase family APA03_RS09750 PF00403 Heavy-metal-associated domain APA03_RS09760 PF07732 Multicopper oxidase APA03_RS09760 PF00394 Multicopper oxidase APA03_RS09760 PF07731 Multicopper oxidase APA03_RS09765 PF05275 Copper resistance protein B precursor (CopB) APA03_RS09770 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APA03_RS09770 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APA03_RS09775 PF10369 Small subunit of acetolactate synthase APA03_RS09780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS09780 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS09780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS09805 PF00271 Helicase conserved C-terminal domain APA03_RS09805 PF00270 DEAD/DEAH box helicase APA03_RS09825 PF00464 Serine hydroxymethyltransferase APA03_RS09830 PF13520 Amino acid permease APA03_RS09835 PF00490 Delta-aminolevulinic acid dehydratase APA03_RS09840 PF04376 Arginine-tRNA-protein transferase, N terminus APA03_RS09840 PF04377 Arginine-tRNA-protein transferase, C terminus APA03_RS09845 PF03989 DNA gyrase C-terminal domain, beta-propeller APA03_RS09845 PF00521 DNA gyrase/topoisomerase IV, subunit A APA03_RS09850 PF02565 Recombination protein O C terminal APA03_RS09850 PF11967 Recombination protein O N terminal APA03_RS09855 PF00889 Elongation factor TS APA03_RS09860 PF00318 Ribosomal protein S2 APA03_RS09865 PF00355 Rieske [2Fe-2S] domain APA03_RS09880 PF01063 Amino-transferase class IV APA03_RS09885 PF04715 Anthranilate synthase component I, N terminal region APA03_RS09885 PF00425 chorismate binding enzyme APA03_RS09890 PF14579 Helix-hairpin-helix motif APA03_RS09890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APA03_RS09890 PF02811 PHP domain APA03_RS09890 PF07733 Bacterial DNA polymerase III alpha NTPase domain APA03_RS09895 PF02569 Pantoate-beta-alanine ligase APA03_RS09900 PF01042 Endoribonuclease L-PSP APA03_RS09915 PF00155 Aminotransferase class I and II APA03_RS09920 PF00155 Aminotransferase class I and II APA03_RS09925 PF00749 tRNA synthetases class I (E and Q), catalytic domain APA03_RS09950 PF02310 B12 binding domain APA03_RS09950 PF04055 Radical SAM superfamily APA03_RS09955 PF00334 Nucleoside diphosphate kinase APA03_RS09960 PF00005 ABC transporter APA03_RS09960 PF12848 ABC transporter APA03_RS09970 PF00072 Response regulator receiver domain APA03_RS09970 PF00486 Transcriptional regulatory protein, C terminal APA03_RS09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS09975 PF00672 HAMP domain APA03_RS09975 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS09985 PF05198 Translation initiation factor IF-3, N-terminal domain APA03_RS09985 PF00707 Translation initiation factor IF-3, C-terminal domain APA03_RS09990 PF03129 Anticodon binding domain APA03_RS09990 PF02824 TGS domain APA03_RS09990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APA03_RS09990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APA03_RS10010 PF01513 ATP-NAD kinase APA03_RS10025 PF00075 RNase H APA03_RS10030 PF01636 Phosphotransferase enzyme family APA03_RS10035 PF02401 LytB protein APA03_RS10045 PF03109 ABC1 family APA03_RS10055 PF01645 Conserved region in glutamate synthase APA03_RS10055 PF00310 Glutamine amidotransferases class-II APA03_RS10055 PF01493 GXGXG motif APA03_RS10055 PF04898 Glutamate synthase central domain APA03_RS10060 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS10060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APA03_RS10080 PF01520 N-acetylmuramoyl-L-alanine amidase APA03_RS10085 PF00575 S1 RNA binding domain APA03_RS10085 PF10150 Ribonuclease E/G family APA03_RS10085 PF12111 Polyribonucleotide phosphorylase C terminal APA03_RS10090 PF01634 ATP phosphoribosyltransferase APA03_RS10095 PF00815 Histidinol dehydrogenase APA03_RS10100 PF01176 Translation initiation factor 1A / IF-1 APA03_RS10105 PF02545 Maf-like protein APA03_RS10115 PF03884 DNA gyrase inhibitor YacG APA03_RS10245 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS10245 PF00589 Phage integrase family APA03_RS10310 PF00929 Exonuclease APA03_RS10310 PF14579 Helix-hairpin-helix motif APA03_RS10310 PF01336 OB-fold nucleic acid binding domain APA03_RS10310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APA03_RS10310 PF07733 Bacterial DNA polymerase III alpha NTPase domain APA03_RS10310 PF02811 PHP domain APA03_RS10310 PF11490 DNA polymerase III polC-type N-terminus II APA03_RS10365 PF00589 Phage integrase family APA03_RS10385 PF00171 Aldehyde dehydrogenase family APA03_RS10390 PF09330 D-lactate dehydrogenase, membrane binding APA03_RS10390 PF01565 FAD binding domain APA03_RS10395 PF15887 Putative zinc-binding metallo-peptidase APA03_RS10395 PF10005 zinc-ribbon domain APA03_RS10405 PF14403 Circularly permuted ATP-grasp type 2 APA03_RS10415 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APA03_RS10415 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APA03_RS10420 PF02445 Quinolinate synthetase A protein APA03_RS10430 PF16925 Tetracyclin repressor-like, C-terminal domain APA03_RS10430 PF00440 Bacterial regulatory proteins, tetR family APA03_RS10435 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS10440 PF00171 Aldehyde dehydrogenase family APA03_RS10445 PF07690 Major Facilitator Superfamily APA03_RS10455 PF03358 NADPH-dependent FMN reductase APA03_RS10460 PF05726 Pirin C-terminal cupin domain APA03_RS10460 PF02678 Pirin APA03_RS10465 PF03466 LysR substrate binding domain APA03_RS10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS10470 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS10475 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS10480 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS10500 PF00892 EamA-like transporter family APA03_RS10505 PF03746 LamB/YcsF family APA03_RS10510 PF02626 Carboxyltransferase domain, subdomain A and B APA03_RS10520 PF00106 short chain dehydrogenase APA03_RS10525 PF00364 Biotin-requiring enzyme APA03_RS10530 PF02785 Biotin carboxylase C-terminal domain APA03_RS10530 PF00289 Biotin carboxylase, N-terminal domain APA03_RS10530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APA03_RS10540 PF00155 Aminotransferase class I and II APA03_RS10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS10545 PF03466 LysR substrate binding domain APA03_RS10550 PF01425 Amidase APA03_RS10555 PF00106 short chain dehydrogenase APA03_RS10560 PF00128 Alpha amylase, catalytic domain APA03_RS10565 PF00128 Alpha amylase, catalytic domain APA03_RS10565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APA03_RS10565 PF11941 Domain of unknown function (DUF3459) APA03_RS10570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APA03_RS10570 PF02806 Alpha amylase, C-terminal all-beta domain APA03_RS10570 PF00128 Alpha amylase, catalytic domain APA03_RS10575 PF08323 Starch synthase catalytic domain APA03_RS10575 PF00534 Glycosyl transferases group 1 APA03_RS10580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APA03_RS10580 PF00128 Alpha amylase, catalytic domain APA03_RS10595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS10595 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS10595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS10600 PF01527 Transposase APA03_RS10605 PF13333 Integrase core domain APA03_RS10605 PF13276 HTH-like domain APA03_RS10605 PF00665 Integrase core domain APA03_RS10610 PF01494 FAD binding domain APA03_RS10615 PF02630 SCO1/SenC APA03_RS10635 PF13276 HTH-like domain APA03_RS10635 PF00665 Integrase core domain APA03_RS10635 PF13333 Integrase core domain APA03_RS10640 PF01527 Transposase APA03_RS10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS10680 PF03466 LysR substrate binding domain APA03_RS10685 PF04632 Fusaric acid resistance protein family APA03_RS10715 PF00893 Small Multidrug Resistance protein APA03_RS10720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APA03_RS10720 PF02403 Seryl-tRNA synthetase N-terminal domain APA03_RS10725 PF00902 Sec-independent protein translocase protein (TatC) APA03_RS10730 PF02416 mttA/Hcf106 family APA03_RS10735 PF04079 Segregation and condensation complex subunit ScpB APA03_RS10740 PF02616 Segregation and condensation protein ScpA APA03_RS10750 PF03485 Arginyl tRNA synthetase N terminal domain APA03_RS10750 PF05746 DALR anticodon binding domain APA03_RS10750 PF00750 tRNA synthetases class I (R) APA03_RS10755 PF13286 Phosphohydrolase-associated domain APA03_RS10755 PF01966 HD domain APA03_RS10760 PF01521 Iron-sulphur cluster biosynthesis APA03_RS10765 PF03372 Endonuclease/Exonuclease/phosphatase family APA03_RS10785 PF12706 Beta-lactamase superfamily domain APA03_RS10790 PF03070 TENA/THI-4/PQQC family APA03_RS10795 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APA03_RS10800 PF04055 Radical SAM superfamily APA03_RS10800 PF13186 Iron-sulfur cluster-binding domain APA03_RS10810 PF00574 Clp protease APA03_RS10820 PF00155 Aminotransferase class I and II APA03_RS10825 PF01842 ACT domain APA03_RS10825 PF00742 Homoserine dehydrogenase APA03_RS10825 PF03447 Homoserine dehydrogenase, NAD binding domain APA03_RS10830 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APA03_RS10835 PF17768 RecJ OB domain APA03_RS10835 PF02272 DHHA1 domain APA03_RS10835 PF01368 DHH family APA03_RS10840 PF04542 Sigma-70 region 2 APA03_RS10840 PF04545 Sigma-70, region 4 APA03_RS10840 PF00140 Sigma-70 factor, region 1.2 APA03_RS10845 PF00849 RNA pseudouridylate synthase APA03_RS10850 PF01032 FecCD transport family APA03_RS10855 PF00005 ABC transporter APA03_RS10860 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APA03_RS10870 PF01063 Amino-transferase class IV APA03_RS10875 PF01367 5'-3' exonuclease, C-terminal SAM fold APA03_RS10875 PF01612 3'-5' exonuclease APA03_RS10875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APA03_RS10875 PF00476 DNA polymerase family A APA03_RS10890 PF00083 Sugar (and other) transporter APA03_RS10890 PF08946 Osmosensory transporter coiled coil APA03_RS10895 PF01609 Transposase DDE domain APA03_RS10905 PF02322 Cytochrome bd terminal oxidase subunit II APA03_RS10910 PF01654 Cytochrome bd terminal oxidase subunit I APA03_RS10920 PF04454 Encapsulating protein for peroxidase APA03_RS10925 PF00324 Amino acid permease APA03_RS10935 PF01011 PQQ enzyme repeat APA03_RS10935 PF13360 PQQ-like domain APA03_RS10945 PF14552 Tautomerase enzyme APA03_RS10950 PF00202 Aminotransferase class-III APA03_RS10955 PF00392 Bacterial regulatory proteins, gntR family APA03_RS10955 PF00155 Aminotransferase class I and II APA03_RS10960 PF01546 Peptidase family M20/M25/M40 APA03_RS10960 PF07687 Peptidase dimerisation domain APA03_RS10965 PF01180 Dihydroorotate dehydrogenase APA03_RS10970 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APA03_RS10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS10975 PF03050 Transposase IS66 family APA03_RS10975 PF13007 Transposase C of IS166 homeodomain APA03_RS10975 PF13005 zinc-finger binding domain of transposase IS66 APA03_RS10975 PF13817 IS66 C-terminal element APA03_RS10985 PF01527 Transposase APA03_RS11000 PF01979 Amidohydrolase family APA03_RS11005 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APA03_RS11020 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APA03_RS11025 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APA03_RS11035 PF02556 Preprotein translocase subunit SecB APA03_RS11045 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APA03_RS11050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APA03_RS11060 PF03702 Anhydro-N-acetylmuramic acid kinase APA03_RS11075 PF00474 Sodium:solute symporter family APA03_RS11085 PF13532 2OG-Fe(II) oxygenase superfamily APA03_RS11090 PF00144 Beta-lactamase APA03_RS11095 PF01381 Helix-turn-helix APA03_RS11100 PF00970 Oxidoreductase FAD-binding domain APA03_RS11100 PF00042 Globin APA03_RS11100 PF00175 Oxidoreductase NAD-binding domain APA03_RS11105 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS11110 PF09383 NIL domain APA03_RS11110 PF00005 ABC transporter APA03_RS11115 PF03180 NLPA lipoprotein APA03_RS11120 PF02913 FAD linked oxidases, C-terminal domain APA03_RS11120 PF01565 FAD binding domain APA03_RS11125 PF10414 Sirohaem synthase dimerisation region APA03_RS11125 PF14824 Sirohaem biosynthesis protein central APA03_RS11125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APA03_RS11135 PF07859 alpha/beta hydrolase fold APA03_RS11140 PF01047 MarR family APA03_RS11145 PF01425 Amidase APA03_RS11150 PF01613 Flavin reductase like domain APA03_RS11155 PF00596 Class II Aldolase and Adducin N-terminal domain APA03_RS11165 PF00175 Oxidoreductase NAD-binding domain APA03_RS11165 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS11170 PF00106 short chain dehydrogenase APA03_RS11180 PF00355 Rieske [2Fe-2S] domain APA03_RS11180 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APA03_RS11190 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APA03_RS11200 PF00171 Aldehyde dehydrogenase family APA03_RS11205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS11205 PF13360 PQQ-like domain APA03_RS11210 PF07690 Major Facilitator Superfamily APA03_RS11225 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS11230 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS11240 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS11245 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS11250 PF13416 Bacterial extracellular solute-binding protein APA03_RS11255 PF08402 TOBE domain APA03_RS11255 PF00005 ABC transporter APA03_RS11260 PF00171 Aldehyde dehydrogenase family APA03_RS11280 PF13640 2OG-Fe(II) oxygenase superfamily APA03_RS11280 PF18331 PKHD-type hydroxylase C-terminal domain APA03_RS11295 PF00593 TonB dependent receptor APA03_RS11295 PF07715 TonB-dependent Receptor Plug Domain APA03_RS11300 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS11305 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS11320 PF00355 Rieske [2Fe-2S] domain APA03_RS11325 PF00375 Sodium:dicarboxylate symporter family APA03_RS11345 PF00732 GMC oxidoreductase APA03_RS11345 PF05199 GMC oxidoreductase APA03_RS11350 PF00034 Cytochrome c APA03_RS11350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS11355 PF00171 Aldehyde dehydrogenase family APA03_RS11360 PF07690 Major Facilitator Superfamily APA03_RS11365 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APA03_RS11370 PF02277 Phosphoribosyltransferase APA03_RS11375 PF02654 Cobalamin-5-phosphate synthase APA03_RS11380 PF00155 Aminotransferase class I and II APA03_RS11385 PF03186 CobD/Cbib protein APA03_RS11390 PF00881 Nitroreductase family APA03_RS11395 PF07685 CobB/CobQ-like glutamine amidotransferase domain APA03_RS11395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APA03_RS11400 PF12557 Cob(I)alamin adenosyltransferase N terminal APA03_RS11400 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APA03_RS11410 PF07685 CobB/CobQ-like glutamine amidotransferase domain APA03_RS11410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APA03_RS11415 PF02514 CobN/Magnesium Chelatase APA03_RS11420 PF07683 Cobalamin synthesis protein cobW C-terminal domain APA03_RS11420 PF02492 CobW/HypB/UreG, nucleotide-binding domain APA03_RS11440 PF04632 Fusaric acid resistance protein family APA03_RS11445 PF01184 GPR1/FUN34/yaaH family APA03_RS11450 PF00378 Enoyl-CoA hydratase/isomerase APA03_RS11455 PF01613 Flavin reductase like domain APA03_RS11460 PF00950 ABC 3 transport family APA03_RS11465 PF00005 ABC transporter APA03_RS11475 PF01475 Ferric uptake regulator family APA03_RS11490 PF01008 Initiation factor 2 subunit family APA03_RS11505 PF00291 Pyridoxal-phosphate dependent enzyme APA03_RS11510 PF02540 NAD synthase APA03_RS11510 PF00117 Glutamine amidotransferase class-I APA03_RS11510 PF00958 GMP synthase C terminal domain APA03_RS11530 PF00239 Resolvase, N terminal domain APA03_RS11530 PF02796 Helix-turn-helix domain of resolvase APA03_RS11565 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS11585 PF01609 Transposase DDE domain APA03_RS11630 PF00083 Sugar (and other) transporter APA03_RS11635 PF01551 Peptidase family M23 APA03_RS11635 PF01464 Transglycosylase SLT domain APA03_RS11635 PF10145 Phage-related minor tail protein APA03_RS11640 PF02652 L-lactate permease APA03_RS11650 PF01370 NAD dependent epimerase/dehydratase family APA03_RS11655 PF01790 Prolipoprotein diacylglyceryl transferase APA03_RS11665 PF02578 Multi-copper polyphenol oxidoreductase laccase APA03_RS11690 PF00005 ABC transporter APA03_RS11695 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APA03_RS11710 PF00155 Aminotransferase class I and II APA03_RS11720 PF02780 Transketolase, C-terminal domain APA03_RS11720 PF00456 Transketolase, thiamine diphosphate binding domain APA03_RS11720 PF02779 Transketolase, pyrimidine binding domain APA03_RS11725 PF00923 Transaldolase/Fructose-6-phosphate aldolase APA03_RS11730 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APA03_RS11730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APA03_RS11740 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APA03_RS11745 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APA03_RS11770 PF00654 Voltage gated chloride channel APA03_RS11775 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS11775 PF00107 Zinc-binding dehydrogenase APA03_RS11780 PF01168 Alanine racemase, N-terminal domain APA03_RS11785 PF02705 K+ potassium transporter APA03_RS11790 PF04055 Radical SAM superfamily APA03_RS11790 PF06969 HemN C-terminal domain APA03_RS11810 PF00005 ABC transporter APA03_RS11815 PF00005 ABC transporter APA03_RS11815 PF12399 Branched-chain amino acid ATP-binding cassette transporter APA03_RS11825 PF02653 Branched-chain amino acid transport system / permease component APA03_RS11835 PF01627 Hpt domain APA03_RS11835 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS11835 PF00072 Response regulator receiver domain APA03_RS11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS11835 PF00497 Bacterial extracellular solute-binding proteins, family 3 APA03_RS11840 PF00072 Response regulator receiver domain APA03_RS11840 PF00486 Transcriptional regulatory protein, C terminal APA03_RS11880 PF02492 CobW/HypB/UreG, nucleotide-binding domain APA03_RS11885 PF01730 UreF APA03_RS11890 PF02814 UreE urease accessory protein, N-terminal domain APA03_RS11890 PF05194 UreE urease accessory protein, C-terminal domain APA03_RS11895 PF01979 Amidohydrolase family APA03_RS11895 PF00449 Urease alpha-subunit, N-terminal domain APA03_RS11900 PF00699 Urease beta subunit APA03_RS11905 PF00547 Urease, gamma subunit APA03_RS11910 PF01774 UreD urease accessory protein APA03_RS11915 PF03824 High-affinity nickel-transport protein APA03_RS11920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APA03_RS11920 PF00205 Thiamine pyrophosphate enzyme, central domain APA03_RS11920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APA03_RS11940 PF00210 Ferritin-like domain APA03_RS11945 PF03960 ArsC family APA03_RS11955 PF03352 Methyladenine glycosylase APA03_RS11965 PF00578 AhpC/TSA family APA03_RS11965 PF10417 C-terminal domain of 1-Cys peroxiredoxin APA03_RS11970 PF00753 Metallo-beta-lactamase superfamily APA03_RS11975 PF01925 Sulfite exporter TauE/SafE APA03_RS11985 PF03960 ArsC family APA03_RS12000 PF02321 Outer membrane efflux protein APA03_RS12005 PF13533 Biotin-lipoyl like APA03_RS12015 PF03466 LysR substrate binding domain APA03_RS12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS12030 PF07690 Major Facilitator Superfamily APA03_RS12035 PF01609 Transposase DDE domain APA03_RS12040 PF17645 Arylmalonate decarboxylase APA03_RS12045 PF00561 alpha/beta hydrolase fold APA03_RS12050 PF00857 Isochorismatase family APA03_RS12060 PF00034 Cytochrome c APA03_RS12060 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APA03_RS12060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APA03_RS12065 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS12065 PF01799 [2Fe-2S] binding domain APA03_RS12070 PF01494 FAD binding domain APA03_RS12075 PF12802 MarR family APA03_RS12095 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS12095 PF01434 Peptidase family M41 APA03_RS12095 PF17862 AAA+ lid domain APA03_RS12105 PF03743 Bacterial conjugation TrbI-like protein APA03_RS12115 PF00665 Integrase core domain APA03_RS12115 PF13276 HTH-like domain APA03_RS12115 PF13333 Integrase core domain APA03_RS12120 PF01527 Transposase APA03_RS12175 PF13333 Integrase core domain APA03_RS12175 PF00665 Integrase core domain APA03_RS12175 PF13276 HTH-like domain APA03_RS12180 PF01527 Transposase APA03_RS12205 PF00665 Integrase core domain APA03_RS12205 PF13333 Integrase core domain APA03_RS12205 PF13276 HTH-like domain APA03_RS12210 PF01527 Transposase APA03_RS12255 PF01370 NAD dependent epimerase/dehydratase family APA03_RS12265 PF00753 Metallo-beta-lactamase superfamily APA03_RS12275 PF02625 XdhC and CoxI family APA03_RS12275 PF13478 XdhC Rossmann domain APA03_RS12295 PF02347 Glycine cleavage system P-protein APA03_RS12300 PF01597 Glycine cleavage H-protein APA03_RS12305 PF08669 Glycine cleavage T-protein C-terminal barrel domain APA03_RS12305 PF01571 Aminomethyltransferase folate-binding domain APA03_RS12310 PF17284 Spermidine synthase tetramerisation domain APA03_RS12315 PF02675 S-adenosylmethionine decarboxylase APA03_RS12325 PF03466 LysR substrate binding domain APA03_RS12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS12335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APA03_RS12340 PF01467 Cytidylyltransferase-like APA03_RS12345 PF00521 DNA gyrase/topoisomerase IV, subunit A APA03_RS12345 PF03989 DNA gyrase C-terminal domain, beta-propeller APA03_RS12360 PF03725 3' exoribonuclease family, domain 2 APA03_RS12360 PF00575 S1 RNA binding domain APA03_RS12360 PF00013 KH domain APA03_RS12360 PF01138 3' exoribonuclease family, domain 1 APA03_RS12360 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APA03_RS12365 PF00312 Ribosomal protein S15 APA03_RS12370 PF01509 TruB family pseudouridylate synthase (N terminal domain) APA03_RS12370 PF16198 tRNA pseudouridylate synthase B C-terminal domain APA03_RS12375 PF02405 Permease MlaE APA03_RS12380 PF00005 ABC transporter APA03_RS12385 PF02470 MlaD protein APA03_RS12420 PF00664 ABC transporter transmembrane region APA03_RS12420 PF03412 Peptidase C39 family APA03_RS12420 PF00005 ABC transporter APA03_RS12430 PF02965 Vitamin B12 dependent methionine synthase, activation domain APA03_RS12430 PF02574 Homocysteine S-methyltransferase APA03_RS12430 PF00809 Pterin binding enzyme APA03_RS12430 PF02607 B12 binding domain APA03_RS12430 PF02310 B12 binding domain APA03_RS12445 PF00156 Phosphoribosyl transferase domain APA03_RS12445 PF13537 Glutamine amidotransferase domain APA03_RS12455 PF02470 MlaD protein APA03_RS12460 PF04403 Paraquat-inducible protein A APA03_RS12470 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APA03_RS12475 PF00535 Glycosyl transferase family 2 APA03_RS12480 PF00430 ATP synthase B/B' CF(0) APA03_RS12485 PF00430 ATP synthase B/B' CF(0) APA03_RS12490 PF00137 ATP synthase subunit C APA03_RS12495 PF00119 ATP synthase A chain APA03_RS12500 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter APA03_RS12505 PF02881 SRP54-type protein, helical bundle domain APA03_RS12505 PF00448 SRP54-type protein, GTPase domain APA03_RS12510 PF00919 Uncharacterized protein family UPF0004 APA03_RS12510 PF04055 Radical SAM superfamily APA03_RS12515 PF01678 Diaminopimelate epimerase APA03_RS12520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APA03_RS12530 PF00270 DEAD/DEAH box helicase APA03_RS12530 PF03880 DbpA RNA binding domain APA03_RS12530 PF00271 Helicase conserved C-terminal domain APA03_RS12545 PF00380 Ribosomal protein S9/S16 APA03_RS12550 PF00572 Ribosomal protein L13 APA03_RS12565 PF01895 PhoU domain APA03_RS12570 PF00005 ABC transporter APA03_RS12575 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS12580 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS12585 PF00920 Dehydratase family APA03_RS12595 PF00107 Zinc-binding dehydrogenase APA03_RS12595 PF08240 Alcohol dehydrogenase GroES-like domain APA03_RS12605 PF13180 PDZ domain APA03_RS12620 PF10609 NUBPL iron-transfer P-loop NTPase APA03_RS12635 PF02511 Thymidylate synthase complementing protein APA03_RS12645 PF05683 Fumarase C-terminus APA03_RS12645 PF05681 Fumarate hydratase (Fumerase) APA03_RS12650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APA03_RS12660 PF01266 FAD dependent oxidoreductase APA03_RS12665 PF00842 Alanine racemase, C-terminal domain APA03_RS12665 PF01168 Alanine racemase, N-terminal domain APA03_RS12670 PF01037 Lrp/AsnC ligand binding domain APA03_RS12675 PF02033 Ribosome-binding factor A APA03_RS12680 PF08364 Bacterial translation initiation factor IF-2 associated region APA03_RS12680 PF04760 Translation initiation factor IF-2, N-terminal region APA03_RS12680 PF00009 Elongation factor Tu GTP binding domain APA03_RS12680 PF11987 Translation-initiation factor 2 APA03_RS12690 PF00575 S1 RNA binding domain APA03_RS12690 PF13184 NusA-like KH domain APA03_RS12690 PF08529 NusA N-terminal domain APA03_RS12695 PF17384 RimP C-terminal SH3 domain APA03_RS12695 PF02576 RimP N-terminal domain APA03_RS12705 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS12705 PF07724 AAA domain (Cdc48 subfamily) APA03_RS12705 PF17871 AAA lid domain APA03_RS12705 PF02861 Clp amino terminal domain, pathogenicity island component APA03_RS12705 PF10431 C-terminal, D2-small domain, of ClpB protein APA03_RS12715 PF03466 LysR substrate binding domain APA03_RS12715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS12720 PF00528 Binding-protein-dependent transport system inner membrane component APA03_RS12725 PF00005 ABC transporter APA03_RS12730 PF00694 Aconitase C-terminal domain APA03_RS12730 PF00330 Aconitase family (aconitate hydratase) APA03_RS12735 PF00005 ABC transporter APA03_RS12740 PF03379 CcmB protein APA03_RS12750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APA03_RS12750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APA03_RS12755 PF03631 Virulence factor BrkB APA03_RS12760 PF05036 Sporulation related domain APA03_RS12760 PF03330 Lytic transglycolase APA03_RS12765 PF01220 Dehydroquinase class II APA03_RS12770 PF00364 Biotin-requiring enzyme APA03_RS12775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APA03_RS12775 PF00289 Biotin carboxylase, N-terminal domain APA03_RS12775 PF02785 Biotin carboxylase C-terminal domain APA03_RS12780 PF00083 Sugar (and other) transporter APA03_RS12785 PF01964 Radical SAM ThiC family APA03_RS12785 PF13667 ThiC-associated domain APA03_RS12800 PF03239 Iron permease FTR1 family APA03_RS12805 PF10634 Fe2+ transport protein APA03_RS12810 PF04966 Carbohydrate-selective porin, OprB family APA03_RS12825 PF04966 Carbohydrate-selective porin, OprB family APA03_RS12835 PF00202 Aminotransferase class-III APA03_RS12845 PF03652 Holliday junction resolvase APA03_RS12850 PF02686 Glu-tRNAGln amidotransferase C subunit APA03_RS12855 PF01425 Amidase APA03_RS12860 PF02934 GatB/GatE catalytic domain APA03_RS12860 PF02637 GatB domain APA03_RS12870 PF00664 ABC transporter transmembrane region APA03_RS12870 PF00005 ABC transporter APA03_RS12875 PF10576 Iron-sulfur binding domain of endonuclease III APA03_RS12875 PF00633 Helix-hairpin-helix motif APA03_RS12875 PF00730 HhH-GPD superfamily base excision DNA repair protein APA03_RS12880 PF00762 Ferrochelatase APA03_RS12885 PF00730 HhH-GPD superfamily base excision DNA repair protein APA03_RS12885 PF14815 NUDIX domain APA03_RS12905 PF12100 Domain of unknown function (DUF3576) APA03_RS12910 PF08264 Anticodon-binding domain of tRNA APA03_RS12910 PF13603 Leucyl-tRNA synthetase, Domain 2 APA03_RS12910 PF00133 tRNA synthetases class I (I, L, M and V) APA03_RS12955 PF02321 Outer membrane efflux protein APA03_RS12965 PF00766 Electron transfer flavoprotein FAD-binding domain APA03_RS12965 PF01012 Electron transfer flavoprotein domain APA03_RS12970 PF01012 Electron transfer flavoprotein domain APA03_RS12985 PF04055 Radical SAM superfamily APA03_RS12995 PF00027 Cyclic nucleotide-binding domain APA03_RS12995 PF13545 Crp-like helix-turn-helix domain APA03_RS13000 PF13180 PDZ domain APA03_RS13005 PF14437 MafB19-like deaminase APA03_RS13010 PF07722 Peptidase C26 APA03_RS13015 PF01479 S4 domain APA03_RS13015 PF00849 RNA pseudouridylate synthase APA03_RS13025 PF00436 Single-strand binding protein family APA03_RS13035 PF01258 Prokaryotic dksA/traR C4-type zinc finger APA03_RS13055 PF02796 Helix-turn-helix domain of resolvase APA03_RS13055 PF00239 Resolvase, N terminal domain APA03_RS13080 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS13085 PF00534 Glycosyl transferases group 1 APA03_RS13085 PF13439 Glycosyltransferase Family 4 APA03_RS13095 PF00579 tRNA synthetases class I (W and Y) APA03_RS13100 PF01523 Putative modulator of DNA gyrase APA03_RS13105 PF00300 Histidine phosphatase superfamily (branch 1) APA03_RS13115 PF16363 GDP-mannose 4,6 dehydratase APA03_RS13120 PF00483 Nucleotidyl transferase APA03_RS13125 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APA03_RS13130 PF04321 RmlD substrate binding domain APA03_RS13140 PF09397 Ftsk gamma domain APA03_RS13140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APA03_RS13140 PF01580 FtsK/SpoIIIE family APA03_RS13140 PF17854 FtsK alpha domain APA03_RS13145 PF01479 S4 domain APA03_RS13145 PF00849 RNA pseudouridylate synthase APA03_RS13150 PF00534 Glycosyl transferases group 1 APA03_RS13150 PF13439 Glycosyltransferase Family 4 APA03_RS13165 PF00111 2Fe-2S iron-sulfur cluster binding domain APA03_RS13170 PF00266 Aminotransferase class-V APA03_RS13175 PF00266 Aminotransferase class-V APA03_RS13180 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APA03_RS13190 PF01406 tRNA synthetases class I (C) catalytic domain APA03_RS13190 PF09190 DALR domain APA03_RS13200 PF02875 Mur ligase family, glutamate ligase domain APA03_RS13200 PF08245 Mur ligase middle domain APA03_RS13205 PF01039 Carboxyl transferase domain APA03_RS13205 PF17848 Acetyl-coA carboxylase zinc finger domain APA03_RS13210 PF00085 Thioredoxin APA03_RS13215 PF13361 UvrD-like helicase C-terminal domain APA03_RS13215 PF00580 UvrD/REP helicase N-terminal domain APA03_RS13215 PF12705 PD-(D/E)XK nuclease superfamily APA03_RS13220 PF12705 PD-(D/E)XK nuclease superfamily APA03_RS13225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APA03_RS13230 PF00486 Transcriptional regulatory protein, C terminal APA03_RS13230 PF00072 Response regulator receiver domain APA03_RS13235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APA03_RS13235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APA03_RS13235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APA03_RS13235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APA03_RS13240 PF00809 Pterin binding enzyme APA03_RS13245 PF06480 FtsH Extracellular APA03_RS13245 PF17862 AAA+ lid domain APA03_RS13245 PF00004 ATPase family associated with various cellular activities (AAA) APA03_RS13245 PF01434 Peptidase family M41 APA03_RS13250 PF01171 PP-loop family APA03_RS13260 PF00691 OmpA family APA03_RS13265 PF07676 WD40-like Beta Propeller Repeat APA03_RS13265 PF04052 TolB amino-terminal domain APA03_RS13275 PF02472 Biopolymer transport protein ExbD/TolR APA03_RS13280 PF01618 MotA/TolQ/ExbB proton channel family APA03_RS13285 PF03061 Thioesterase superfamily APA03_RS13290 PF05491 RuvB C-terminal winged helix domain APA03_RS13290 PF05496 Holliday junction DNA helicase RuvB P-loop domain APA03_RS13290 PF17864 RuvB AAA lid domain APA03_RS13295 PF07499 RuvA, C-terminal domain APA03_RS13295 PF01330 RuvA N terminal domain APA03_RS13300 PF02075 Crossover junction endodeoxyribonuclease RuvC APA03_RS13305 PF01709 Transcriptional regulator APA03_RS13310 PF07516 SecA Wing and Scaffold domain APA03_RS13310 PF01043 SecA preprotein cross-linking domain APA03_RS13310 PF07517 SecA DEAD-like domain APA03_RS13310 PF02810 SEC-C motif APA03_RS13320 PF01960 ArgJ family APA03_RS13330 PF00924 Mechanosensitive ion channel APA03_RS13345 PF01556 DnaJ C terminal domain APA03_RS13345 PF00684 DnaJ central domain APA03_RS13345 PF00226 DnaJ domain APA03_RS13360 PF03807 NADP oxidoreductase coenzyme F420-dependent APA03_RS13360 PF14748 Pyrroline-5-carboxylate reductase dimerisation APA03_RS13380 PF00216 Bacterial DNA-binding protein APA03_RS13400 PF00535 Glycosyl transferase family 2 APA03_RS13410 PF02540 NAD synthase APA03_RS13410 PF00795 Carbon-nitrogen hydrolase APA03_RS13415 PF00475 Imidazoleglycerol-phosphate dehydratase APA03_RS13420 PF00117 Glutamine amidotransferase class-I APA03_RS13425 PF00977 Histidine biosynthesis protein APA03_RS13430 PF00977 Histidine biosynthesis protein APA03_RS13435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APA03_RS13440 PF01230 HIT domain APA03_RS13445 PF00881 Nitroreductase family APA03_RS13450 PF01494 FAD binding domain APA03_RS13455 PF13811 Domain of unknown function (DUF4186) APA03_RS13475 PF17762 HTH domain found in ParB protein APA03_RS13475 PF02195 ParB-like nuclease domain APA03_RS13480 PF13614 AAA domain APA03_RS13485 PF02527 rRNA small subunit methyltransferase G APA03_RS13490 PF01134 Glucose inhibited division protein A APA03_RS13490 PF13932 GidA associated domain APA03_RS13495 PF10396 GTP-binding protein TrmE N-terminus APA03_RS13495 PF12631 MnmE helical domain APA03_RS13495 PF01926 50S ribosome-binding GTPase APA03_RS13500 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APA03_RS13500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APA03_RS13515 PF01609 Transposase DDE domain APA03_RS13530 PF03641 Possible lysine decarboxylase APA03_RS13535 PF07690 Major Facilitator Superfamily APA03_RS13545 PF03653 Uncharacterised protein family (UPF0093) APA03_RS13550 PF13419 Haloacid dehalogenase-like hydrolase APA03_RS13555 PF01208 Uroporphyrinogen decarboxylase (URO-D) APA03_RS13560 PF02545 Maf-like protein APA03_RS13595 PF00239 Resolvase, N terminal domain APA03_RS13595 PF02796 Helix-turn-helix domain of resolvase APA03_RS13635 PF01527 Transposase APA03_RS13640 PF00580 UvrD/REP helicase N-terminal domain APA03_RS13640 PF13361 UvrD-like helicase C-terminal domain APA03_RS13645 PF01548 Transposase APA03_RS13645 PF02371 Transposase IS116/IS110/IS902 family APA03_RS13650 PF01548 Transposase APA03_RS13650 PF02371 Transposase IS116/IS110/IS902 family APA03_RS13655 PF00239 Resolvase, N terminal domain APA03_RS13665 PF08125 Mannitol dehydrogenase C-terminal domain APA03_RS13665 PF01232 Mannitol dehydrogenase Rossmann domain APA03_RS13670 PF13419 Haloacid dehalogenase-like hydrolase APA03_RS13725 PF01527 Transposase APA03_RS13730 PF13276 HTH-like domain APA03_RS13730 PF13333 Integrase core domain APA03_RS13730 PF00665 Integrase core domain APA03_RS13755 PF13098 Thioredoxin-like domain APA03_RS13775 PF13614 AAA domain APA03_RS13780 PF17762 HTH domain found in ParB protein APA03_RS13780 PF02195 ParB-like nuclease domain APA03_RS13795 PF00216 Bacterial DNA-binding protein APA03_RS13835 PF00440 Bacterial regulatory proteins, tetR family APA03_RS13835 PF16925 Tetracyclin repressor-like, C-terminal domain APA03_RS13840 PF00465 Iron-containing alcohol dehydrogenase APA03_RS13845 PF00171 Aldehyde dehydrogenase family APA03_RS13875 PF03814 Potassium-transporting ATPase A subunit APA03_RS13885 PF02669 K+-transporting ATPase, c chain APA03_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS13890 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS13890 PF02702 Osmosensitive K+ channel His kinase sensor domain APA03_RS13890 PF13493 Domain of unknown function (DUF4118) APA03_RS13890 PF13492 GAF domain APA03_RS13895 PF00072 Response regulator receiver domain APA03_RS13895 PF00486 Transcriptional regulatory protein, C terminal APA03_RS13900 PF00999 Sodium/hydrogen exchanger family APA03_RS13915 PF12833 Helix-turn-helix domain APA03_RS13915 PF02311 AraC-like ligand binding domain APA03_RS13925 PF01757 Acyltransferase family APA03_RS13935 PF02661 Fic/DOC family APA03_RS13945 PF11800 Replication protein C C-terminal region APA03_RS13945 PF03428 Replication protein C N-terminal domain APA03_RS13960 PF03009 Glycerophosphoryl diester phosphodiesterase family APA03_RS13975 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APA03_RS14025 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system APA03_RS14040 PF01609 Transposase DDE domain APA03_RS14045 PF01566 Natural resistance-associated macrophage protein APA03_RS14050 PF01325 Iron dependent repressor, N-terminal DNA binding domain APA03_RS14050 PF02742 Iron dependent repressor, metal binding and dimerisation domain APA03_RS14055 PF06472 ABC transporter transmembrane region 2 APA03_RS14055 PF00005 ABC transporter APA03_RS14060 PF04966 Carbohydrate-selective porin, OprB family APA03_RS14095 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS14110 PF13333 Integrase core domain APA03_RS14110 PF13276 HTH-like domain APA03_RS14110 PF00665 Integrase core domain APA03_RS14115 PF01527 Transposase APA03_RS14120 PF07859 alpha/beta hydrolase fold APA03_RS14140 PF00270 DEAD/DEAH box helicase APA03_RS14140 PF00271 Helicase conserved C-terminal domain APA03_RS14140 PF18019 HD domain APA03_RS14155 PF09344 CT1975-like protein APA03_RS14170 PF01867 CRISPR associated protein Cas1 APA03_RS14175 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) APA03_RS14200 PF13276 HTH-like domain APA03_RS14200 PF00665 Integrase core domain APA03_RS14200 PF13333 Integrase core domain APA03_RS14205 PF01527 Transposase APA03_RS14240 PF13333 Integrase core domain APA03_RS14240 PF00665 Integrase core domain APA03_RS14240 PF13276 HTH-like domain APA03_RS14245 PF01527 Transposase APA03_RS14255 PF04221 RelB antitoxin APA03_RS14260 PF05016 ParE toxin of type II toxin-antitoxin system, parDE APA03_RS14270 PF06100 MCRA family APA03_RS14340 PF00216 Bacterial DNA-binding protein APA03_RS14345 PF00665 Integrase core domain APA03_RS14345 PF13333 Integrase core domain APA03_RS14345 PF13276 HTH-like domain APA03_RS14350 PF01527 Transposase APA03_RS14380 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APA03_RS14385 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APA03_RS14410 PF01925 Sulfite exporter TauE/SafE APA03_RS14430 PF16177 Acetyl-coenzyme A synthetase N-terminus APA03_RS14430 PF00501 AMP-binding enzyme APA03_RS14430 PF13193 AMP-binding enzyme C-terminal domain APA03_RS14445 PF00534 Glycosyl transferases group 1 APA03_RS14445 PF13439 Glycosyltransferase Family 4 APA03_RS14450 PF00586 AIR synthase related protein, N-terminal domain APA03_RS14450 PF02769 AIR synthase related protein, C-terminal domain APA03_RS14465 PF00795 Carbon-nitrogen hydrolase APA03_RS14475 PF00155 Aminotransferase class I and II APA03_RS14475 PF00392 Bacterial regulatory proteins, gntR family APA03_RS14485 PF03466 LysR substrate binding domain APA03_RS14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS14490 PF07690 Major Facilitator Superfamily APA03_RS14505 PF00580 UvrD/REP helicase N-terminal domain APA03_RS14505 PF13361 UvrD-like helicase C-terminal domain APA03_RS14510 PF14490 Helix-hairpin-helix containing domain APA03_RS14510 PF13538 UvrD-like helicase C-terminal domain APA03_RS14510 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APA03_RS14530 PF01527 Transposase APA03_RS14555 PF18766 SWI2/SNF2 ATPase APA03_RS14555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APA03_RS14555 PF11867 Domain of unknown function (DUF3387) APA03_RS14565 PF01609 Transposase DDE domain APA03_RS14570 PF01420 Type I restriction modification DNA specificity domain APA03_RS14575 PF01909 Nucleotidyltransferase domain APA03_RS14585 PF02384 N-6 DNA Methylase APA03_RS14590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APA03_RS14620 PF07687 Peptidase dimerisation domain APA03_RS14620 PF01546 Peptidase family M20/M25/M40 APA03_RS14625 PF00732 GMC oxidoreductase APA03_RS14625 PF05199 GMC oxidoreductase APA03_RS14630 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APA03_RS14640 PF00171 Aldehyde dehydrogenase family APA03_RS14655 PF01527 Transposase APA03_RS14660 PF13276 HTH-like domain APA03_RS14660 PF13333 Integrase core domain APA03_RS14660 PF00665 Integrase core domain APA03_RS14665 PF00005 ABC transporter APA03_RS14675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APA03_RS14675 PF01568 Molydopterin dinucleotide binding domain APA03_RS14675 PF00384 Molybdopterin oxidoreductase APA03_RS14680 PF01609 Transposase DDE domain APA03_RS14685 PF01568 Molydopterin dinucleotide binding domain APA03_RS14685 PF04324 BFD-like [2Fe-2S] binding domain APA03_RS14685 PF00384 Molybdopterin oxidoreductase APA03_RS14685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APA03_RS14690 PF04324 BFD-like [2Fe-2S] binding domain APA03_RS14690 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APA03_RS14690 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APA03_RS14690 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS14690 PF13806 Rieske-like [2Fe-2S] domain APA03_RS14690 PF18267 Rubredoxin NAD+ reductase C-terminal domain APA03_RS14695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APA03_RS14695 PF07992 Pyridine nucleotide-disulphide oxidoreductase APA03_RS14695 PF13806 Rieske-like [2Fe-2S] domain APA03_RS14695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APA03_RS14695 PF04324 BFD-like [2Fe-2S] binding domain APA03_RS14695 PF18267 Rubredoxin NAD+ reductase C-terminal domain APA03_RS14715 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS14715 PF08521 Two-component sensor kinase N-terminal APA03_RS14715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS14720 PF00486 Transcriptional regulatory protein, C terminal APA03_RS14720 PF00072 Response regulator receiver domain APA03_RS14725 PF00873 AcrB/AcrD/AcrF family APA03_RS14765 PF01717 Cobalamin-independent synthase, Catalytic domain APA03_RS14765 PF08267 Cobalamin-independent synthase, N-terminal domain APA03_RS14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS14770 PF03466 LysR substrate binding domain APA03_RS14775 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS14790 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system APA03_RS14800 PF03358 NADPH-dependent FMN reductase APA03_RS14805 PF02040 Arsenical pump membrane protein APA03_RS14810 PF03960 ArsC family APA03_RS14825 PF18766 SWI2/SNF2 ATPase APA03_RS14825 PF11867 Domain of unknown function (DUF3387) APA03_RS14825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APA03_RS14835 PF12161 HsdM N-terminal domain APA03_RS14835 PF02384 N-6 DNA Methylase APA03_RS14845 PF00665 Integrase core domain APA03_RS14845 PF13333 Integrase core domain APA03_RS14845 PF13276 HTH-like domain APA03_RS14850 PF01527 Transposase APA03_RS14860 PF03960 ArsC family APA03_RS14865 PF02040 Arsenical pump membrane protein APA03_RS14870 PF01527 Transposase APA03_RS14875 PF13276 HTH-like domain APA03_RS14875 PF13333 Integrase core domain APA03_RS14875 PF00665 Integrase core domain APA03_RS14885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APA03_RS14885 PF03466 LysR substrate binding domain APA03_RS14910 PF01850 PIN domain APA03_RS14915 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APA03_RS14920 PF00239 Resolvase, N terminal domain APA03_RS14930 PF01527 Transposase APA03_RS14935 PF13333 Integrase core domain APA03_RS14935 PF13276 HTH-like domain APA03_RS14935 PF00665 Integrase core domain APA03_RS14940 PF02705 K+ potassium transporter APA03_RS14945 PF13276 HTH-like domain APA03_RS14945 PF13333 Integrase core domain APA03_RS14945 PF00665 Integrase core domain APA03_RS14950 PF01527 Transposase APA03_RS14955 PF02705 K+ potassium transporter APA03_RS14960 PF01695 IstB-like ATP binding protein APA03_RS14980 PF13276 HTH-like domain APA03_RS14980 PF13333 Integrase core domain APA03_RS14980 PF00665 Integrase core domain APA03_RS15010 PF00437 Type II/IV secretion system protein APA03_RS15030 PF05016 ParE toxin of type II toxin-antitoxin system, parDE APA03_RS15040 PF01527 Transposase APA03_RS15045 PF13276 HTH-like domain APA03_RS15045 PF13333 Integrase core domain APA03_RS15045 PF00665 Integrase core domain APA03_RS15065 PF00106 short chain dehydrogenase APA03_RS15070 PF01527 Transposase APA03_RS15075 PF00665 Integrase core domain APA03_RS15075 PF13333 Integrase core domain APA03_RS15075 PF13276 HTH-like domain APA03_RS15080 PF00665 Integrase core domain APA03_RS15080 PF13276 HTH-like domain APA03_RS15080 PF13333 Integrase core domain APA03_RS15115 PF13276 HTH-like domain APA03_RS15115 PF00665 Integrase core domain APA03_RS15115 PF13333 Integrase core domain APA03_RS15120 PF01527 Transposase APA03_RS15135 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS15135 PF00589 Phage integrase family APA03_RS15145 PF00873 AcrB/AcrD/AcrF family APA03_RS15165 PF00376 MerR family regulatory protein APA03_RS15165 PF09278 MerR, DNA binding APA03_RS15180 PF03814 Potassium-transporting ATPase A subunit APA03_RS15190 PF02669 K+-transporting ATPase, c chain APA03_RS15195 PF13493 Domain of unknown function (DUF4118) APA03_RS15195 PF00512 His Kinase A (phospho-acceptor) domain APA03_RS15195 PF02702 Osmosensitive K+ channel His kinase sensor domain APA03_RS15195 PF13492 GAF domain APA03_RS15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APA03_RS15200 PF00072 Response regulator receiver domain APA03_RS15200 PF00486 Transcriptional regulatory protein, C terminal APA03_RS15210 PF00106 short chain dehydrogenase APA03_RS15235 PF02384 N-6 DNA Methylase APA03_RS15245 PF00589 Phage integrase family APA03_RS15265 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APA03_RS15270 PF01850 PIN domain APA03_RS15275 PF00665 Integrase core domain APA03_RS15280 PF01695 IstB-like ATP binding protein APA03_RS15285 PF01845 CcdB protein APA03_RS15315 PF00665 Integrase core domain APA03_RS15325 PF02195 ParB-like nuclease domain APA03_RS15325 PF17762 HTH domain found in ParB protein APA03_RS15350 PF13340 Putative transposase of IS4/5 family (DUF4096) APA03_RS15360 PF00589 Phage integrase family APA03_RS15360 PF02899 Phage integrase, N-terminal SAM-like domain APA03_RS15385 PF13276 HTH-like domain APA03_RS15385 PF00665 Integrase core domain APA03_RS15385 PF13333 Integrase core domain APA03_RS15390 PF01527 Transposase APA03_RS15415 PF02796 Helix-turn-helix domain of resolvase APA03_RS15415 PF00239 Resolvase, N terminal domain APA03_RS15435 PF13276 HTH-like domain APA03_RS15435 PF00665 Integrase core domain APA03_RS15435 PF13333 Integrase core domain APA03_RS15440 PF01527 Transposase APA03_RS15455 PF01609 Transposase DDE domain APA03_RS15460 PF13333 Integrase core domain APA03_RS15460 PF00665 Integrase core domain APA03_RS15460 PF13276 HTH-like domain APA03_RS15465 PF01527 Transposase APA03_RS15475 PF00239 Resolvase, N terminal domain APA03_RS15475 PF02796 Helix-turn-helix domain of resolvase APA03_RS15480 PF09299 Mu transposase, C-terminal APA03_RS15480 PF00665 Integrase core domain APA03_RS15485 PF13401 AAA domain APA03_RS15490 PF00239 Resolvase, N terminal domain APA03_RS15490 PF02796 Helix-turn-helix domain of resolvase APA03_RS15505 PF10134 Replication initiator protein A APA03_RS15555 PF17841 BID domain of Bartonella effector protein (Bep) APA03_RS15555 PF03389 MobA/MobL family APA03_RS15555 PF01443 Viral (Superfamily 1) RNA helicase APA03_RS15565 PF01850 PIN domain APA03_RS15580 PF00239 Resolvase, N terminal domain APA03_RS15580 PF02796 Helix-turn-helix domain of resolvase APA03_RS15595 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system APA03_RS15605 PF12146 Serine aminopeptidase, S33 APA03_RS15610 PF00665 Integrase core domain APA03_RS15610 PF13276 HTH-like domain APA03_RS15610 PF13333 Integrase core domain APA03_RS15615 PF01527 Transposase APA03_RS15620 PF10544 T5orf172 domain APA03_RS15635 PF13784 Fic/DOC family N-terminal APA03_RS15635 PF02661 Fic/DOC family APA03_RS15660 PF00239 Resolvase, N terminal domain APA03_RS15660 PF02796 Helix-turn-helix domain of resolvase APA03_RS15680 PF01527 Transposase APA03_RS15685 PF13333 Integrase core domain APA03_RS15685 PF13276 HTH-like domain APA03_RS15685 PF00665 Integrase core domain APA03_RS15690 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system APA03_RS15710 PF03389 MobA/MobL family APA03_RS15760 PF01381 Helix-turn-helix